Multiple sequence alignment - TraesCS3A01G097300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G097300 chr3A 100.000 4600 0 0 1 4600 63080242 63075643 0.000000e+00 8495.0
1 TraesCS3A01G097300 chr3A 87.831 189 12 4 1811 1999 63078358 63078181 1.300000e-50 211.0
2 TraesCS3A01G097300 chr3A 87.831 189 12 4 1885 2062 63078432 63078244 1.300000e-50 211.0
3 TraesCS3A01G097300 chr3A 86.755 151 9 5 1785 1935 63078321 63078182 1.710000e-34 158.0
4 TraesCS3A01G097300 chr3A 86.755 151 9 5 1922 2061 63078458 63078308 1.710000e-34 158.0
5 TraesCS3A01G097300 chr3A 96.053 76 3 0 1846 1921 63078234 63078159 1.740000e-24 124.0
6 TraesCS3A01G097300 chr3A 96.053 76 3 0 2009 2084 63078397 63078322 1.740000e-24 124.0
7 TraesCS3A01G097300 chr3B 92.253 2543 144 25 2077 4600 79130597 79128089 0.000000e+00 3555.0
8 TraesCS3A01G097300 chr3B 88.168 1479 105 40 427 1884 79132049 79130620 0.000000e+00 1698.0
9 TraesCS3A01G097300 chr3B 89.433 388 27 5 2 385 79132501 79132124 1.160000e-130 477.0
10 TraesCS3A01G097300 chr3B 79.692 325 56 9 1445 1762 79130596 79130275 4.630000e-55 226.0
11 TraesCS3A01G097300 chr3B 95.413 109 5 0 1985 2093 79130719 79130611 1.700000e-39 174.0
12 TraesCS3A01G097300 chr3B 93.878 49 3 0 1887 1935 79130691 79130643 1.770000e-09 75.0
13 TraesCS3A01G097300 chr3D 94.895 1195 33 8 3414 4600 49647261 49646087 0.000000e+00 1844.0
14 TraesCS3A01G097300 chr3D 88.981 1207 101 11 2048 3233 49648594 49647399 0.000000e+00 1463.0
15 TraesCS3A01G097300 chr3D 87.609 920 62 30 435 1326 49650331 49649436 0.000000e+00 1020.0
16 TraesCS3A01G097300 chr3D 90.820 512 33 8 1349 1854 49649443 49648940 0.000000e+00 673.0
17 TraesCS3A01G097300 chr3D 90.054 372 29 5 1428 1798 49648945 49648581 4.160000e-130 475.0
18 TraesCS3A01G097300 chr3D 86.333 300 28 7 114 410 49650685 49650396 9.610000e-82 315.0
19 TraesCS3A01G097300 chr3D 80.488 410 63 12 1983 2391 49649011 49648618 9.680000e-77 298.0
20 TraesCS3A01G097300 chr3D 77.586 348 48 16 1427 1762 49648582 49648253 2.830000e-42 183.0
21 TraesCS3A01G097300 chr3D 95.455 44 2 0 1885 1928 49648983 49648940 2.300000e-08 71.3
22 TraesCS3A01G097300 chr6D 94.660 206 10 1 1171 1375 441776449 441776654 7.430000e-83 318.0
23 TraesCS3A01G097300 chr2D 94.175 206 11 1 1171 1375 127410076 127410281 3.460000e-81 313.0
24 TraesCS3A01G097300 chr2D 92.718 206 14 1 1171 1375 391511974 391512179 3.480000e-76 296.0
25 TraesCS3A01G097300 chr7D 93.689 206 12 1 1171 1375 575045329 575045124 1.610000e-79 307.0
26 TraesCS3A01G097300 chr7D 93.204 206 13 1 1171 1375 250467128 250466923 7.480000e-78 302.0
27 TraesCS3A01G097300 chr1D 94.030 201 11 1 1176 1375 56944992 56945192 2.080000e-78 303.0
28 TraesCS3A01G097300 chr4D 93.204 206 13 1 1171 1375 407722673 407722878 7.480000e-78 302.0
29 TraesCS3A01G097300 chr7B 82.716 81 10 4 266 345 676032912 676032835 8.260000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G097300 chr3A 63075643 63080242 4599 True 1354.428571 8495 91.611143 1 4600 7 chr3A.!!$R1 4599
1 TraesCS3A01G097300 chr3B 79128089 79132501 4412 True 1034.166667 3555 89.806167 2 4600 6 chr3B.!!$R1 4598
2 TraesCS3A01G097300 chr3D 49646087 49650685 4598 True 704.700000 1844 88.024556 114 4600 9 chr3D.!!$R1 4486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 418 0.179084 ACTTCACACGGGTCACACAG 60.179 55.000 0.00 0.00 0.00 3.66 F
415 420 0.250793 TTCACACGGGTCACACAGTT 59.749 50.000 0.00 0.00 0.00 3.16 F
418 423 0.179084 ACACGGGTCACACAGTTCAG 60.179 55.000 0.00 0.00 0.00 3.02 F
420 425 0.539986 ACGGGTCACACAGTTCAGTT 59.460 50.000 0.00 0.00 0.00 3.16 F
965 1065 0.954452 CTGTTTTGTGCTCTGGGTCC 59.046 55.000 0.00 0.00 0.00 4.46 F
2550 2988 0.809385 TGCGACAAAACGAAACCCAA 59.191 45.000 0.00 0.00 35.09 4.12 F
2770 3208 1.135431 CCTGAAGAGCTCTGTGAGTCG 60.135 57.143 19.06 7.05 31.39 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 1347 1.291877 AACTGCTGCATTCGGTCGAC 61.292 55.000 7.13 7.13 0.00 4.20 R
1455 1558 1.421268 TCTGTGCAACCCAGATGAAGT 59.579 47.619 1.56 0.00 34.12 3.01 R
1736 1843 1.676006 AGGCGAACACTCAAAAACAGG 59.324 47.619 0.00 0.00 0.00 4.00 R
2370 2796 2.602211 CTCATAAGCTCAGCACTCAACG 59.398 50.000 0.00 0.00 0.00 4.10 R
2592 3030 0.827368 CCTGCTGTCTTAGAGGACCC 59.173 60.000 0.00 0.00 35.54 4.46 R
3531 3999 0.169672 GCATGTGTCGCAAAGCAGAT 59.830 50.000 8.74 0.00 33.94 2.90 R
4467 4948 1.839354 TGGCTGACAATGGCTCAGATA 59.161 47.619 5.73 0.00 37.90 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 94 8.421249 TCAACCAAACTTTAAGATCCATTGAT 57.579 30.769 0.00 0.00 0.00 2.57
94 96 8.306038 CAACCAAACTTTAAGATCCATTGATGA 58.694 33.333 0.00 0.00 0.00 2.92
120 122 5.461078 ACAGTTTGACGTGTATGTGAAGTAC 59.539 40.000 0.00 0.00 0.00 2.73
133 136 5.591643 TGTGAAGTACAAAGAAATCGAGC 57.408 39.130 0.00 0.00 36.06 5.03
160 163 9.140286 GAATTTACCCTGCTAAATGTCTTTTTC 57.860 33.333 0.00 0.00 0.00 2.29
178 181 8.982649 GTCTTTTTCGACATTAAAGCGTATAAC 58.017 33.333 0.00 0.00 34.11 1.89
242 245 9.844790 TGCAACTGCTATATTTGCATTAATATC 57.155 29.630 7.51 0.00 46.14 1.63
395 400 1.240256 TTAATGAACCGTGGGTGCAC 58.760 50.000 8.80 8.80 45.10 4.57
398 403 0.889186 ATGAACCGTGGGTGCACTTC 60.889 55.000 17.98 11.75 45.10 3.01
399 404 1.525077 GAACCGTGGGTGCACTTCA 60.525 57.895 17.98 12.74 35.34 3.02
400 405 1.782028 GAACCGTGGGTGCACTTCAC 61.782 60.000 23.98 23.98 44.90 3.18
407 412 3.330275 GTGCACTTCACACGGGTC 58.670 61.111 10.32 0.00 44.98 4.46
408 413 1.522806 GTGCACTTCACACGGGTCA 60.523 57.895 10.32 0.00 44.98 4.02
409 414 1.522806 TGCACTTCACACGGGTCAC 60.523 57.895 0.00 0.00 0.00 3.67
410 415 1.522806 GCACTTCACACGGGTCACA 60.523 57.895 0.00 0.00 0.00 3.58
411 416 1.772063 GCACTTCACACGGGTCACAC 61.772 60.000 0.00 0.00 0.00 3.82
412 417 0.461163 CACTTCACACGGGTCACACA 60.461 55.000 0.00 0.00 0.00 3.72
413 418 0.179084 ACTTCACACGGGTCACACAG 60.179 55.000 0.00 0.00 0.00 3.66
415 420 0.250793 TTCACACGGGTCACACAGTT 59.749 50.000 0.00 0.00 0.00 3.16
416 421 0.179094 TCACACGGGTCACACAGTTC 60.179 55.000 0.00 0.00 0.00 3.01
417 422 0.461163 CACACGGGTCACACAGTTCA 60.461 55.000 0.00 0.00 0.00 3.18
418 423 0.179084 ACACGGGTCACACAGTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
420 425 0.539986 ACGGGTCACACAGTTCAGTT 59.460 50.000 0.00 0.00 0.00 3.16
421 426 1.217882 CGGGTCACACAGTTCAGTTC 58.782 55.000 0.00 0.00 0.00 3.01
422 427 1.472552 CGGGTCACACAGTTCAGTTCA 60.473 52.381 0.00 0.00 0.00 3.18
423 428 2.213499 GGGTCACACAGTTCAGTTCAG 58.787 52.381 0.00 0.00 0.00 3.02
424 429 2.420129 GGGTCACACAGTTCAGTTCAGT 60.420 50.000 0.00 0.00 0.00 3.41
425 430 3.270877 GGTCACACAGTTCAGTTCAGTT 58.729 45.455 0.00 0.00 0.00 3.16
455 512 4.753610 AGTTCAGTCTTTTTACCGCTTACC 59.246 41.667 0.00 0.00 0.00 2.85
457 514 4.964593 TCAGTCTTTTTACCGCTTACCTT 58.035 39.130 0.00 0.00 0.00 3.50
458 515 4.753107 TCAGTCTTTTTACCGCTTACCTTG 59.247 41.667 0.00 0.00 0.00 3.61
459 516 4.514066 CAGTCTTTTTACCGCTTACCTTGT 59.486 41.667 0.00 0.00 0.00 3.16
461 518 6.370718 CAGTCTTTTTACCGCTTACCTTGTAT 59.629 38.462 0.00 0.00 0.00 2.29
508 574 1.610102 GCTTCCATCCATCCATCCTCG 60.610 57.143 0.00 0.00 0.00 4.63
584 656 1.135575 CCGTTCCAAGAGCAAATCAGC 60.136 52.381 0.00 0.00 0.00 4.26
653 725 3.674682 CGCGATTCCCCTGAGAGAATATC 60.675 52.174 0.00 0.00 32.91 1.63
728 801 1.299468 CCTGCATCTACCGAGCGAC 60.299 63.158 0.00 0.00 0.00 5.19
857 957 4.456911 TGAATCTGGTGCTCATTGACTTTC 59.543 41.667 0.00 0.00 0.00 2.62
875 975 4.291249 ACTTTCTAGGAATTGGGGTTAGCA 59.709 41.667 0.00 0.00 0.00 3.49
876 976 4.938575 TTCTAGGAATTGGGGTTAGCAA 57.061 40.909 0.00 0.00 0.00 3.91
877 977 4.503714 TCTAGGAATTGGGGTTAGCAAG 57.496 45.455 0.00 0.00 0.00 4.01
878 978 4.108570 TCTAGGAATTGGGGTTAGCAAGA 58.891 43.478 0.00 0.00 0.00 3.02
879 979 3.372440 AGGAATTGGGGTTAGCAAGAG 57.628 47.619 0.00 0.00 0.00 2.85
880 980 2.024941 AGGAATTGGGGTTAGCAAGAGG 60.025 50.000 0.00 0.00 0.00 3.69
881 981 2.379005 GAATTGGGGTTAGCAAGAGGG 58.621 52.381 0.00 0.00 0.00 4.30
882 982 1.681229 ATTGGGGTTAGCAAGAGGGA 58.319 50.000 0.00 0.00 0.00 4.20
883 983 1.681229 TTGGGGTTAGCAAGAGGGAT 58.319 50.000 0.00 0.00 0.00 3.85
884 984 1.681229 TGGGGTTAGCAAGAGGGATT 58.319 50.000 0.00 0.00 0.00 3.01
887 987 3.024547 GGGGTTAGCAAGAGGGATTTTC 58.975 50.000 0.00 0.00 0.00 2.29
908 1008 2.621338 CGTGCATTCTAGCCTTCTGAA 58.379 47.619 0.00 0.00 0.00 3.02
909 1009 3.201290 CGTGCATTCTAGCCTTCTGAAT 58.799 45.455 0.00 0.00 0.00 2.57
910 1010 3.624861 CGTGCATTCTAGCCTTCTGAATT 59.375 43.478 0.00 0.00 0.00 2.17
911 1011 4.260538 CGTGCATTCTAGCCTTCTGAATTC 60.261 45.833 0.00 0.00 0.00 2.17
912 1012 4.880696 GTGCATTCTAGCCTTCTGAATTCT 59.119 41.667 7.05 0.00 0.00 2.40
913 1013 4.880120 TGCATTCTAGCCTTCTGAATTCTG 59.120 41.667 7.05 6.50 0.00 3.02
914 1014 5.121811 GCATTCTAGCCTTCTGAATTCTGA 58.878 41.667 10.68 10.68 0.00 3.27
915 1015 5.764192 GCATTCTAGCCTTCTGAATTCTGAT 59.236 40.000 14.89 4.05 0.00 2.90
916 1016 6.293516 GCATTCTAGCCTTCTGAATTCTGATG 60.294 42.308 14.89 15.88 0.00 3.07
917 1017 4.701765 TCTAGCCTTCTGAATTCTGATGC 58.298 43.478 20.40 20.40 0.00 3.91
918 1018 3.361281 AGCCTTCTGAATTCTGATGCA 57.639 42.857 25.42 10.69 0.00 3.96
919 1019 3.015327 AGCCTTCTGAATTCTGATGCAC 58.985 45.455 25.42 17.64 0.00 4.57
920 1020 2.751259 GCCTTCTGAATTCTGATGCACA 59.249 45.455 21.86 7.58 0.00 4.57
921 1021 3.427233 GCCTTCTGAATTCTGATGCACAC 60.427 47.826 21.86 10.29 0.00 3.82
922 1022 3.128242 CCTTCTGAATTCTGATGCACACC 59.872 47.826 14.89 0.00 0.00 4.16
923 1023 3.708403 TCTGAATTCTGATGCACACCT 57.292 42.857 10.68 0.00 0.00 4.00
924 1024 4.025040 TCTGAATTCTGATGCACACCTT 57.975 40.909 10.68 0.00 0.00 3.50
925 1025 4.005650 TCTGAATTCTGATGCACACCTTC 58.994 43.478 10.68 0.00 0.00 3.46
926 1026 3.753815 TGAATTCTGATGCACACCTTCA 58.246 40.909 7.05 0.00 0.00 3.02
927 1027 4.338012 TGAATTCTGATGCACACCTTCAT 58.662 39.130 7.05 0.00 0.00 2.57
928 1028 5.499313 TGAATTCTGATGCACACCTTCATA 58.501 37.500 7.05 0.00 0.00 2.15
929 1029 5.587443 TGAATTCTGATGCACACCTTCATAG 59.413 40.000 7.05 0.00 0.00 2.23
930 1030 2.910199 TCTGATGCACACCTTCATAGC 58.090 47.619 0.00 0.00 0.00 2.97
956 1056 1.541588 GGACATCTCCCTGTTTTGTGC 59.458 52.381 0.00 0.00 0.00 4.57
961 1061 1.202806 TCTCCCTGTTTTGTGCTCTGG 60.203 52.381 0.00 0.00 0.00 3.86
965 1065 0.954452 CTGTTTTGTGCTCTGGGTCC 59.046 55.000 0.00 0.00 0.00 4.46
979 1079 3.089284 CTGGGTCCCCAAATTAACTGTC 58.911 50.000 5.13 0.00 46.63 3.51
1025 1128 4.539881 GGCGAGCTCGACGAGGAC 62.540 72.222 38.74 18.82 43.02 3.85
1026 1129 4.872485 GCGAGCTCGACGAGGACG 62.872 72.222 38.74 10.96 43.02 4.79
1138 1241 2.315925 TGCCTGCATACTGAGTAAGC 57.684 50.000 12.47 12.47 33.98 3.09
1151 1254 4.940046 ACTGAGTAAGCTGTGGATTCATTG 59.060 41.667 0.00 0.00 0.00 2.82
1187 1290 5.504994 GCTCGTATTGGTTGTTCTTGTTTGA 60.505 40.000 0.00 0.00 0.00 2.69
1194 1297 5.771469 TGGTTGTTCTTGTTTGATATGCAG 58.229 37.500 0.00 0.00 0.00 4.41
1215 1318 5.059161 CAGGAGTTTCTGTTCATGTCTCAA 58.941 41.667 0.00 0.00 0.00 3.02
1236 1339 6.545567 TCAATGGTATCCATGCTGATAATGT 58.454 36.000 1.86 0.00 44.40 2.71
1244 1347 6.114187 TCCATGCTGATAATGTTAGGTAGG 57.886 41.667 0.00 0.00 0.00 3.18
1253 1356 2.198827 TGTTAGGTAGGTCGACCGAA 57.801 50.000 28.26 18.09 44.88 4.30
1318 1421 5.827797 ACTTGCTAGAAAACCATCTGAAACA 59.172 36.000 1.04 0.00 0.00 2.83
1325 1428 6.684686 AGAAAACCATCTGAAACATGTGATG 58.315 36.000 14.12 14.12 36.87 3.07
1326 1429 4.445452 AACCATCTGAAACATGTGATGC 57.555 40.909 15.18 0.00 36.08 3.91
1333 1436 4.154737 TCTGAAACATGTGATGCTTGCTAC 59.845 41.667 0.00 0.00 0.00 3.58
1334 1437 4.074259 TGAAACATGTGATGCTTGCTACT 58.926 39.130 0.00 0.00 0.00 2.57
1335 1438 4.083164 TGAAACATGTGATGCTTGCTACTG 60.083 41.667 0.00 0.00 0.00 2.74
1338 1441 4.774124 ACATGTGATGCTTGCTACTGTAT 58.226 39.130 0.00 0.00 0.00 2.29
1339 1442 5.917462 ACATGTGATGCTTGCTACTGTATA 58.083 37.500 0.00 0.00 0.00 1.47
1340 1443 6.348498 ACATGTGATGCTTGCTACTGTATAA 58.652 36.000 0.00 0.00 0.00 0.98
1341 1444 6.994496 ACATGTGATGCTTGCTACTGTATAAT 59.006 34.615 0.00 0.00 0.00 1.28
1342 1445 8.150296 ACATGTGATGCTTGCTACTGTATAATA 58.850 33.333 0.00 0.00 0.00 0.98
1343 1446 9.159364 CATGTGATGCTTGCTACTGTATAATAT 57.841 33.333 0.00 0.00 0.00 1.28
1345 1448 9.639601 TGTGATGCTTGCTACTGTATAATATAC 57.360 33.333 3.56 3.56 0.00 1.47
1346 1449 9.862371 GTGATGCTTGCTACTGTATAATATACT 57.138 33.333 11.25 0.00 0.00 2.12
1347 1450 9.860898 TGATGCTTGCTACTGTATAATATACTG 57.139 33.333 13.49 13.49 0.00 2.74
1531 1634 6.582295 CCTGTGTTGTACAAACTATGAATTGC 59.418 38.462 10.51 0.00 39.20 3.56
1536 1639 7.171848 TGTTGTACAAACTATGAATTGCGTACT 59.828 33.333 10.51 0.00 0.00 2.73
1537 1640 7.661127 TGTACAAACTATGAATTGCGTACTT 57.339 32.000 0.00 0.00 0.00 2.24
1538 1641 7.514805 TGTACAAACTATGAATTGCGTACTTG 58.485 34.615 0.00 0.00 0.00 3.16
1547 1650 3.951979 ATTGCGTACTTGCTGCTTATC 57.048 42.857 0.00 0.00 35.36 1.75
1560 1666 8.428063 ACTTGCTGCTTATCAGATATCTTTAGT 58.572 33.333 1.33 0.00 45.72 2.24
1561 1667 9.270640 CTTGCTGCTTATCAGATATCTTTAGTT 57.729 33.333 1.33 0.00 45.72 2.24
1620 1727 5.248640 TCCATTCACTGATTCTGAAAGTCC 58.751 41.667 0.00 0.00 31.48 3.85
1643 1750 7.711339 GTCCGAATTATCACTTATGGTTTCTCT 59.289 37.037 0.00 0.00 0.00 3.10
1645 1752 8.552034 CCGAATTATCACTTATGGTTTCTCTTC 58.448 37.037 0.00 0.00 0.00 2.87
1707 1814 4.713553 TCACCACATCTTCAGCTAAACAA 58.286 39.130 0.00 0.00 0.00 2.83
1714 1821 5.248477 ACATCTTCAGCTAAACAACCCTCTA 59.752 40.000 0.00 0.00 0.00 2.43
1727 1834 5.600696 ACAACCCTCTACTTGCAAAAATTG 58.399 37.500 0.00 0.08 0.00 2.32
1736 1843 6.978080 TCTACTTGCAAAAATTGAAGTTCCAC 59.022 34.615 0.00 0.00 34.86 4.02
1753 1860 2.680841 TCCACCTGTTTTTGAGTGTTCG 59.319 45.455 0.00 0.00 0.00 3.95
1790 1899 6.273071 ACTGCAACTTAATTTTTGACCAGAC 58.727 36.000 0.00 0.00 0.00 3.51
1846 1955 6.876257 GTCCCTAAATAATCCTGCATCTACTG 59.124 42.308 0.00 0.00 0.00 2.74
1847 1956 6.787458 TCCCTAAATAATCCTGCATCTACTGA 59.213 38.462 0.00 0.00 0.00 3.41
1848 1957 6.876257 CCCTAAATAATCCTGCATCTACTGAC 59.124 42.308 0.00 0.00 0.00 3.51
1849 1958 6.876257 CCTAAATAATCCTGCATCTACTGACC 59.124 42.308 0.00 0.00 0.00 4.02
1850 1959 5.894298 AATAATCCTGCATCTACTGACCA 57.106 39.130 0.00 0.00 0.00 4.02
1851 1960 3.834489 AATCCTGCATCTACTGACCAG 57.166 47.619 0.00 0.00 0.00 4.00
1852 1961 2.532250 TCCTGCATCTACTGACCAGA 57.468 50.000 3.76 0.00 30.84 3.86
1853 1962 2.820178 TCCTGCATCTACTGACCAGAA 58.180 47.619 3.76 0.00 30.84 3.02
1854 1963 2.762887 TCCTGCATCTACTGACCAGAAG 59.237 50.000 3.76 0.00 30.84 2.85
1855 1964 2.762887 CCTGCATCTACTGACCAGAAGA 59.237 50.000 3.76 0.00 30.84 2.87
1856 1965 3.430098 CCTGCATCTACTGACCAGAAGAC 60.430 52.174 3.76 0.00 30.84 3.01
1857 1966 3.435275 TGCATCTACTGACCAGAAGACT 58.565 45.455 3.76 0.00 0.00 3.24
1858 1967 3.194329 TGCATCTACTGACCAGAAGACTG 59.806 47.826 3.76 0.00 43.12 3.51
1859 1968 3.194542 GCATCTACTGACCAGAAGACTGT 59.805 47.826 3.76 0.00 42.05 3.55
1860 1969 4.676723 GCATCTACTGACCAGAAGACTGTC 60.677 50.000 3.76 0.00 42.05 3.51
1861 1970 3.422796 TCTACTGACCAGAAGACTGTCC 58.577 50.000 3.76 0.00 42.05 4.02
1862 1971 2.390225 ACTGACCAGAAGACTGTCCT 57.610 50.000 3.76 0.00 42.05 3.85
1863 1972 2.683768 ACTGACCAGAAGACTGTCCTT 58.316 47.619 3.76 0.00 42.05 3.36
1864 1973 3.845860 ACTGACCAGAAGACTGTCCTTA 58.154 45.455 3.76 0.00 42.05 2.69
1865 1974 4.223953 ACTGACCAGAAGACTGTCCTTAA 58.776 43.478 3.76 0.00 42.05 1.85
1866 1975 4.654262 ACTGACCAGAAGACTGTCCTTAAA 59.346 41.667 3.76 0.00 42.05 1.52
1867 1976 5.308237 ACTGACCAGAAGACTGTCCTTAAAT 59.692 40.000 3.76 0.00 42.05 1.40
1868 1977 6.497259 ACTGACCAGAAGACTGTCCTTAAATA 59.503 38.462 3.76 0.00 42.05 1.40
1869 1978 7.016268 ACTGACCAGAAGACTGTCCTTAAATAA 59.984 37.037 3.76 0.00 42.05 1.40
1870 1979 7.918076 TGACCAGAAGACTGTCCTTAAATAAT 58.082 34.615 3.76 0.00 42.05 1.28
1871 1980 8.041323 TGACCAGAAGACTGTCCTTAAATAATC 58.959 37.037 3.76 0.00 42.05 1.75
1872 1981 7.339482 ACCAGAAGACTGTCCTTAAATAATCC 58.661 38.462 3.76 0.00 42.05 3.01
1873 1982 7.182930 ACCAGAAGACTGTCCTTAAATAATCCT 59.817 37.037 3.76 0.00 42.05 3.24
1874 1983 8.049721 CCAGAAGACTGTCCTTAAATAATCCTT 58.950 37.037 3.76 0.00 42.05 3.36
1875 1984 9.454859 CAGAAGACTGTCCTTAAATAATCCTTT 57.545 33.333 3.76 0.00 39.11 3.11
1895 2004 8.896722 TCCTTTATCTACTTACCAGAAGACTT 57.103 34.615 0.00 0.00 0.00 3.01
1922 2031 9.944376 TCCATAAATAATCCTGCATCTACTTAC 57.056 33.333 0.00 0.00 0.00 2.34
1924 2033 9.725019 CATAAATAATCCTGCATCTACTTACCA 57.275 33.333 0.00 0.00 0.00 3.25
1926 2035 7.618019 AATAATCCTGCATCTACTTACCAGA 57.382 36.000 0.00 0.00 0.00 3.86
1927 2036 5.957771 AATCCTGCATCTACTTACCAGAA 57.042 39.130 0.00 0.00 0.00 3.02
1928 2037 5.543507 ATCCTGCATCTACTTACCAGAAG 57.456 43.478 0.00 0.00 0.00 2.85
1929 2038 4.610333 TCCTGCATCTACTTACCAGAAGA 58.390 43.478 0.00 0.00 0.00 2.87
1930 2039 4.402793 TCCTGCATCTACTTACCAGAAGAC 59.597 45.833 0.00 0.00 0.00 3.01
1932 2041 5.330455 TGCATCTACTTACCAGAAGACTG 57.670 43.478 0.00 0.00 43.12 3.51
1934 2043 5.105716 TGCATCTACTTACCAGAAGACTGTC 60.106 44.000 0.00 0.00 42.05 3.51
1936 2045 6.350612 GCATCTACTTACCAGAAGACTGTCTT 60.351 42.308 22.20 22.20 42.05 3.01
1939 2048 8.019656 TCTACTTACCAGAAGACTGTCTTTTT 57.980 34.615 22.80 12.47 42.05 1.94
1954 2364 9.237846 GACTGTCTTTTTATTTTTGACCAGAAG 57.762 33.333 0.00 0.00 0.00 2.85
1968 2378 5.491070 TGACCAGAAGACTGTCCATAAATG 58.509 41.667 3.76 0.00 42.05 2.32
1972 2382 5.762218 CCAGAAGACTGTCCATAAATGATCC 59.238 44.000 3.76 0.00 42.05 3.36
1981 2391 6.233434 TGTCCATAAATGATCCTGCATCTAC 58.767 40.000 0.00 0.00 31.92 2.59
1982 2392 6.043590 TGTCCATAAATGATCCTGCATCTACT 59.956 38.462 0.00 0.00 31.92 2.57
1983 2393 6.939163 GTCCATAAATGATCCTGCATCTACTT 59.061 38.462 0.00 0.00 31.92 2.24
1984 2394 8.097038 GTCCATAAATGATCCTGCATCTACTTA 58.903 37.037 0.00 0.00 31.92 2.24
1985 2395 8.097038 TCCATAAATGATCCTGCATCTACTTAC 58.903 37.037 0.00 0.00 31.92 2.34
1986 2396 7.335422 CCATAAATGATCCTGCATCTACTTACC 59.665 40.741 0.00 0.00 31.92 2.85
1987 2397 5.894298 AATGATCCTGCATCTACTTACCA 57.106 39.130 0.00 0.00 31.92 3.25
1988 2398 4.944619 TGATCCTGCATCTACTTACCAG 57.055 45.455 0.00 0.00 31.92 4.00
1989 2399 4.546674 TGATCCTGCATCTACTTACCAGA 58.453 43.478 0.00 0.00 31.92 3.86
1990 2400 4.962362 TGATCCTGCATCTACTTACCAGAA 59.038 41.667 0.00 0.00 31.92 3.02
1991 2401 5.069648 TGATCCTGCATCTACTTACCAGAAG 59.930 44.000 0.00 0.00 31.92 2.85
1992 2402 4.610333 TCCTGCATCTACTTACCAGAAGA 58.390 43.478 0.00 0.00 0.00 2.87
1993 2403 4.402793 TCCTGCATCTACTTACCAGAAGAC 59.597 45.833 0.00 0.00 0.00 3.01
1994 2404 4.404073 CCTGCATCTACTTACCAGAAGACT 59.596 45.833 0.00 0.00 0.00 3.24
1995 2405 5.330455 TGCATCTACTTACCAGAAGACTG 57.670 43.478 0.00 0.00 43.12 3.51
1996 2406 4.772624 TGCATCTACTTACCAGAAGACTGT 59.227 41.667 0.00 0.00 42.05 3.55
1997 2407 5.105716 TGCATCTACTTACCAGAAGACTGTC 60.106 44.000 0.00 0.00 42.05 3.51
1998 2408 5.680151 GCATCTACTTACCAGAAGACTGTCC 60.680 48.000 3.76 0.00 42.05 4.02
1999 2409 5.258216 TCTACTTACCAGAAGACTGTCCT 57.742 43.478 3.76 0.00 42.05 3.85
2000 2410 5.642165 TCTACTTACCAGAAGACTGTCCTT 58.358 41.667 3.76 0.00 42.05 3.36
2001 2411 6.075984 TCTACTTACCAGAAGACTGTCCTTT 58.924 40.000 3.76 0.00 42.05 3.11
2002 2412 5.632034 ACTTACCAGAAGACTGTCCTTTT 57.368 39.130 3.76 0.00 42.05 2.27
2003 2413 6.742559 ACTTACCAGAAGACTGTCCTTTTA 57.257 37.500 3.76 0.00 42.05 1.52
2004 2414 7.317722 ACTTACCAGAAGACTGTCCTTTTAT 57.682 36.000 3.76 0.00 42.05 1.40
2005 2415 7.746703 ACTTACCAGAAGACTGTCCTTTTATT 58.253 34.615 3.76 0.00 42.05 1.40
2006 2416 8.218488 ACTTACCAGAAGACTGTCCTTTTATTT 58.782 33.333 3.76 0.00 42.05 1.40
2007 2417 8.990163 TTACCAGAAGACTGTCCTTTTATTTT 57.010 30.769 3.76 0.00 42.05 1.82
2008 2418 7.898014 ACCAGAAGACTGTCCTTTTATTTTT 57.102 32.000 3.76 0.00 42.05 1.94
2009 2419 7.716612 ACCAGAAGACTGTCCTTTTATTTTTG 58.283 34.615 3.76 0.00 42.05 2.44
2010 2420 7.559897 ACCAGAAGACTGTCCTTTTATTTTTGA 59.440 33.333 3.76 0.00 42.05 2.69
2011 2421 7.862873 CCAGAAGACTGTCCTTTTATTTTTGAC 59.137 37.037 3.76 0.00 42.05 3.18
2012 2422 7.862873 CAGAAGACTGTCCTTTTATTTTTGACC 59.137 37.037 3.76 0.00 39.11 4.02
2013 2423 7.559897 AGAAGACTGTCCTTTTATTTTTGACCA 59.440 33.333 3.76 0.00 0.00 4.02
2014 2424 7.277174 AGACTGTCCTTTTATTTTTGACCAG 57.723 36.000 3.76 0.00 0.00 4.00
2015 2425 7.060421 AGACTGTCCTTTTATTTTTGACCAGA 58.940 34.615 3.76 0.00 0.00 3.86
2016 2426 7.559897 AGACTGTCCTTTTATTTTTGACCAGAA 59.440 33.333 3.76 0.00 0.00 3.02
2017 2427 7.716612 ACTGTCCTTTTATTTTTGACCAGAAG 58.283 34.615 0.00 0.00 0.00 2.85
2018 2428 7.559897 ACTGTCCTTTTATTTTTGACCAGAAGA 59.440 33.333 0.00 0.00 0.00 2.87
2019 2429 7.712797 TGTCCTTTTATTTTTGACCAGAAGAC 58.287 34.615 0.00 0.00 0.00 3.01
2020 2430 7.559897 TGTCCTTTTATTTTTGACCAGAAGACT 59.440 33.333 0.00 0.00 0.00 3.24
2021 2431 7.862873 GTCCTTTTATTTTTGACCAGAAGACTG 59.137 37.037 0.00 0.00 43.12 3.51
2022 2432 7.559897 TCCTTTTATTTTTGACCAGAAGACTGT 59.440 33.333 0.00 0.00 42.05 3.55
2023 2433 7.862873 CCTTTTATTTTTGACCAGAAGACTGTC 59.137 37.037 0.00 0.00 42.05 3.51
2024 2434 6.877611 TTATTTTTGACCAGAAGACTGTCC 57.122 37.500 3.76 0.00 42.05 4.02
2025 2435 4.503714 TTTTTGACCAGAAGACTGTCCT 57.496 40.909 3.76 0.00 42.05 3.85
2026 2436 4.503714 TTTTGACCAGAAGACTGTCCTT 57.496 40.909 3.76 0.00 42.05 3.36
2027 2437 5.623956 TTTTGACCAGAAGACTGTCCTTA 57.376 39.130 3.76 0.00 42.05 2.69
2028 2438 5.623956 TTTGACCAGAAGACTGTCCTTAA 57.376 39.130 3.76 0.00 42.05 1.85
2029 2439 5.623956 TTGACCAGAAGACTGTCCTTAAA 57.376 39.130 3.76 0.00 42.05 1.52
2030 2440 5.825593 TGACCAGAAGACTGTCCTTAAAT 57.174 39.130 3.76 0.00 42.05 1.40
2031 2441 6.928348 TGACCAGAAGACTGTCCTTAAATA 57.072 37.500 3.76 0.00 42.05 1.40
2032 2442 7.311092 TGACCAGAAGACTGTCCTTAAATAA 57.689 36.000 3.76 0.00 42.05 1.40
2033 2443 7.918076 TGACCAGAAGACTGTCCTTAAATAAT 58.082 34.615 3.76 0.00 42.05 1.28
2034 2444 8.041323 TGACCAGAAGACTGTCCTTAAATAATC 58.959 37.037 3.76 0.00 42.05 1.75
2035 2445 7.339482 ACCAGAAGACTGTCCTTAAATAATCC 58.661 38.462 3.76 0.00 42.05 3.01
2036 2446 7.182930 ACCAGAAGACTGTCCTTAAATAATCCT 59.817 37.037 3.76 0.00 42.05 3.24
2037 2447 8.705594 CCAGAAGACTGTCCTTAAATAATCCTA 58.294 37.037 3.76 0.00 42.05 2.94
2038 2448 9.535878 CAGAAGACTGTCCTTAAATAATCCTAC 57.464 37.037 3.76 0.00 39.11 3.18
2039 2449 9.268282 AGAAGACTGTCCTTAAATAATCCTACA 57.732 33.333 3.76 0.00 0.00 2.74
2042 2452 9.440761 AGACTGTCCTTAAATAATCCTACATCT 57.559 33.333 3.76 0.00 0.00 2.90
2056 2466 7.826918 ATCCTACATCTACTTACCAGAAGAC 57.173 40.000 0.00 0.00 0.00 3.01
2057 2467 6.971340 TCCTACATCTACTTACCAGAAGACT 58.029 40.000 0.00 0.00 0.00 3.24
2058 2468 6.829298 TCCTACATCTACTTACCAGAAGACTG 59.171 42.308 0.00 0.00 43.12 3.51
2059 2469 6.603997 CCTACATCTACTTACCAGAAGACTGT 59.396 42.308 0.00 0.00 42.05 3.55
2060 2470 6.518208 ACATCTACTTACCAGAAGACTGTC 57.482 41.667 0.00 0.00 42.05 3.51
2061 2471 5.419471 ACATCTACTTACCAGAAGACTGTCC 59.581 44.000 3.76 0.00 42.05 4.02
2062 2472 4.994282 TCTACTTACCAGAAGACTGTCCA 58.006 43.478 3.76 0.00 42.05 4.02
2063 2473 5.580998 TCTACTTACCAGAAGACTGTCCAT 58.419 41.667 3.76 0.00 42.05 3.41
2064 2474 6.728411 TCTACTTACCAGAAGACTGTCCATA 58.272 40.000 3.76 0.00 42.05 2.74
2065 2475 7.179966 TCTACTTACCAGAAGACTGTCCATAA 58.820 38.462 3.76 0.00 42.05 1.90
2066 2476 6.681729 ACTTACCAGAAGACTGTCCATAAA 57.318 37.500 3.76 0.00 42.05 1.40
2067 2477 7.259088 ACTTACCAGAAGACTGTCCATAAAT 57.741 36.000 3.76 0.00 42.05 1.40
2068 2478 8.375493 ACTTACCAGAAGACTGTCCATAAATA 57.625 34.615 3.76 0.00 42.05 1.40
2069 2479 8.822805 ACTTACCAGAAGACTGTCCATAAATAA 58.177 33.333 3.76 0.00 42.05 1.40
2070 2480 9.838339 CTTACCAGAAGACTGTCCATAAATAAT 57.162 33.333 3.76 0.00 42.05 1.28
2071 2481 9.832445 TTACCAGAAGACTGTCCATAAATAATC 57.168 33.333 3.76 0.00 42.05 1.75
2072 2482 7.283329 ACCAGAAGACTGTCCATAAATAATCC 58.717 38.462 3.76 0.00 42.05 3.01
2073 2483 7.127955 ACCAGAAGACTGTCCATAAATAATCCT 59.872 37.037 3.76 0.00 42.05 3.24
2074 2484 7.443575 CCAGAAGACTGTCCATAAATAATCCTG 59.556 40.741 3.76 0.00 42.05 3.86
2075 2485 6.995091 AGAAGACTGTCCATAAATAATCCTGC 59.005 38.462 3.76 0.00 0.00 4.85
2115 2525 7.977789 TTGATCTAAGTTGCAAAGACACATA 57.022 32.000 0.00 0.00 0.00 2.29
2243 2661 8.405531 GCATGTAAATTCTGCTTCCATTTACTA 58.594 33.333 12.74 3.59 41.19 1.82
2317 2743 3.441222 TCCTGCTGTGACAAATTATGCTG 59.559 43.478 0.00 0.00 0.00 4.41
2370 2796 5.243426 TGTAAAAACTCAAGTTCCACAGC 57.757 39.130 0.00 0.00 37.25 4.40
2394 2820 5.171476 GTTGAGTGCTGAGCTTATGAGTTA 58.829 41.667 5.83 0.00 0.00 2.24
2397 2823 5.127682 TGAGTGCTGAGCTTATGAGTTATGA 59.872 40.000 5.83 0.00 0.00 2.15
2408 2834 7.555554 AGCTTATGAGTTATGATCAAACTGCTT 59.444 33.333 20.69 14.35 37.31 3.91
2435 2873 2.692709 TCCATTTCAGCCCAGGAAAA 57.307 45.000 0.00 0.00 37.74 2.29
2487 2925 1.153353 CTTCGGCAAACGGAAAGCTA 58.847 50.000 0.00 0.00 44.45 3.32
2550 2988 0.809385 TGCGACAAAACGAAACCCAA 59.191 45.000 0.00 0.00 35.09 4.12
2567 3005 2.289694 CCCAAACCGAGATTCTCAGTGT 60.290 50.000 13.88 0.71 0.00 3.55
2592 3030 2.328989 CACACGTGTGCAAGCCTG 59.671 61.111 33.52 9.90 39.39 4.85
2770 3208 1.135431 CCTGAAGAGCTCTGTGAGTCG 60.135 57.143 19.06 7.05 31.39 4.18
2779 3217 4.662961 TGTGAGTCGGCGCACCTG 62.663 66.667 21.20 0.00 43.37 4.00
2912 3350 3.603532 ACTGTCATGTTCTCAATCGCAT 58.396 40.909 0.00 0.00 0.00 4.73
2974 3412 2.237643 TGGCTAATGCTTTCTTGTGCA 58.762 42.857 0.00 0.00 43.67 4.57
3080 3518 3.722728 AAGTTCGGAAACAGTCGTAGT 57.277 42.857 0.00 0.00 37.88 2.73
3174 3612 7.860872 GGTCTTTTGTACAACAGAAATAACTGG 59.139 37.037 22.64 0.00 41.59 4.00
3212 3650 6.936900 TGTTCTAATGCTTCTGAAAGTTAGCT 59.063 34.615 0.00 0.00 41.15 3.32
3237 3675 6.426937 TGTTCAATACTACAGTGCTTTTCTCC 59.573 38.462 0.00 0.00 0.00 3.71
3239 3677 6.530120 TCAATACTACAGTGCTTTTCTCCAA 58.470 36.000 0.00 0.00 0.00 3.53
3240 3678 7.168219 TCAATACTACAGTGCTTTTCTCCAAT 58.832 34.615 0.00 0.00 0.00 3.16
3242 3680 8.391106 CAATACTACAGTGCTTTTCTCCAATAC 58.609 37.037 0.00 0.00 0.00 1.89
3243 3681 5.865085 ACTACAGTGCTTTTCTCCAATACA 58.135 37.500 0.00 0.00 0.00 2.29
3248 3686 2.819608 TGCTTTTCTCCAATACACCAGC 59.180 45.455 0.00 0.00 0.00 4.85
3255 3693 2.766263 CTCCAATACACCAGCTCCAGTA 59.234 50.000 0.00 0.00 0.00 2.74
3259 3697 5.606749 TCCAATACACCAGCTCCAGTAATAT 59.393 40.000 0.00 0.00 0.00 1.28
3260 3698 6.785466 TCCAATACACCAGCTCCAGTAATATA 59.215 38.462 0.00 0.00 0.00 0.86
3261 3699 6.874134 CCAATACACCAGCTCCAGTAATATAC 59.126 42.308 0.00 0.00 0.00 1.47
3262 3700 7.441836 CAATACACCAGCTCCAGTAATATACA 58.558 38.462 0.00 0.00 0.00 2.29
3263 3701 5.537300 ACACCAGCTCCAGTAATATACAG 57.463 43.478 0.00 0.00 0.00 2.74
3348 3815 6.295039 ACTTTGTAACAACTGAATGGTACG 57.705 37.500 8.20 0.00 44.67 3.67
3434 3901 4.689071 TCTAGTTTTGTTCTGCTCACGAA 58.311 39.130 0.00 0.00 0.00 3.85
3444 3911 2.738846 TCTGCTCACGAATCTGCTTTTC 59.261 45.455 0.00 0.00 0.00 2.29
3452 3919 7.007815 GCTCACGAATCTGCTTTTCTTTTTATC 59.992 37.037 0.00 0.00 0.00 1.75
3498 3966 3.118629 TGACTACATCCCACTGATTCTGC 60.119 47.826 0.00 0.00 0.00 4.26
3531 3999 0.313043 GTTCCTTGAGACGACGGACA 59.687 55.000 0.00 0.00 0.00 4.02
3741 4215 4.898320 TCTGCTCTCTGAAGTTTATGCAA 58.102 39.130 0.00 0.00 0.00 4.08
3937 4411 7.675161 ATTTTTATTGGGAAGGTAATCCTGG 57.325 36.000 0.00 0.00 44.35 4.45
3986 4463 6.780522 AGATTGGGTTGTTAACATACTTGGTT 59.219 34.615 9.56 0.00 0.00 3.67
4095 4572 0.394899 AAGGGCAGAATAGCACCAGC 60.395 55.000 0.00 0.00 39.23 4.85
4128 4605 4.722361 CTCCAGAGTTGGGAGTAACTAC 57.278 50.000 0.00 0.00 45.59 2.73
4320 4798 7.112122 AGAAGGAAATATACACATCACAGCAA 58.888 34.615 0.00 0.00 0.00 3.91
4367 4847 4.226427 ACATCCATGTGCTTATGACACT 57.774 40.909 2.84 0.00 40.03 3.55
4395 4876 3.878103 CTCATTGCATCCTCTCCTTTCTG 59.122 47.826 0.00 0.00 0.00 3.02
4536 5017 4.960469 AGTCGGATGGAGGTTCATAAACTA 59.040 41.667 0.00 0.00 35.61 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 4.578516 ACGTCAAACTGTTTCATCAATGGA 59.421 37.500 2.13 0.00 0.00 3.41
92 94 4.870991 TCACATACACGTCAAACTGTTTCA 59.129 37.500 2.13 0.00 0.00 2.69
94 96 5.353123 ACTTCACATACACGTCAAACTGTTT 59.647 36.000 0.00 0.00 0.00 2.83
120 122 5.028375 GGGTAAATTCGCTCGATTTCTTTG 58.972 41.667 0.00 0.00 0.00 2.77
133 136 6.436843 AAGACATTTAGCAGGGTAAATTCG 57.563 37.500 12.38 6.71 31.49 3.34
160 163 5.705813 TGGTGTTATACGCTTTAATGTCG 57.294 39.130 0.00 4.48 0.00 4.35
242 245 7.573968 AAGAAAATCTTATCCCGAAGAATGG 57.426 36.000 0.00 0.00 38.89 3.16
362 365 6.425114 ACGGTTCATTAATCATCTGTCATAGC 59.575 38.462 0.00 0.00 0.00 2.97
363 366 7.095481 CCACGGTTCATTAATCATCTGTCATAG 60.095 40.741 0.00 0.00 0.00 2.23
382 387 1.822186 GTGAAGTGCACCCACGGTT 60.822 57.895 19.76 5.46 46.62 4.44
395 400 0.179084 ACTGTGTGACCCGTGTGAAG 60.179 55.000 0.00 0.00 0.00 3.02
398 403 0.461163 TGAACTGTGTGACCCGTGTG 60.461 55.000 0.00 0.00 0.00 3.82
399 404 0.179084 CTGAACTGTGTGACCCGTGT 60.179 55.000 0.00 0.00 0.00 4.49
400 405 0.179084 ACTGAACTGTGTGACCCGTG 60.179 55.000 0.00 0.00 0.00 4.94
401 406 0.539986 AACTGAACTGTGTGACCCGT 59.460 50.000 0.00 0.00 0.00 5.28
402 407 1.217882 GAACTGAACTGTGTGACCCG 58.782 55.000 0.00 0.00 0.00 5.28
405 410 3.932710 TGAACTGAACTGAACTGTGTGAC 59.067 43.478 0.00 0.00 0.00 3.67
406 411 4.183865 CTGAACTGAACTGAACTGTGTGA 58.816 43.478 0.00 0.00 0.00 3.58
407 412 3.935203 ACTGAACTGAACTGAACTGTGTG 59.065 43.478 0.00 0.00 0.00 3.82
408 413 4.207891 ACTGAACTGAACTGAACTGTGT 57.792 40.909 0.00 0.00 0.00 3.72
409 414 4.631377 TGAACTGAACTGAACTGAACTGTG 59.369 41.667 0.00 0.00 0.00 3.66
410 415 4.832248 TGAACTGAACTGAACTGAACTGT 58.168 39.130 0.00 0.00 0.00 3.55
411 416 4.872691 ACTGAACTGAACTGAACTGAACTG 59.127 41.667 0.00 0.00 0.00 3.16
412 417 5.091261 ACTGAACTGAACTGAACTGAACT 57.909 39.130 0.00 0.00 0.00 3.01
413 418 5.351465 TGAACTGAACTGAACTGAACTGAAC 59.649 40.000 0.00 0.00 0.00 3.18
415 420 5.084818 TGAACTGAACTGAACTGAACTGA 57.915 39.130 0.00 0.00 0.00 3.41
416 421 4.872691 ACTGAACTGAACTGAACTGAACTG 59.127 41.667 0.00 0.00 0.00 3.16
417 422 5.091261 ACTGAACTGAACTGAACTGAACT 57.909 39.130 0.00 0.00 0.00 3.01
418 423 5.112686 AGACTGAACTGAACTGAACTGAAC 58.887 41.667 0.00 0.00 0.00 3.18
420 425 5.344743 AAGACTGAACTGAACTGAACTGA 57.655 39.130 0.00 0.00 0.00 3.41
421 426 6.428385 AAAAGACTGAACTGAACTGAACTG 57.572 37.500 0.00 0.00 0.00 3.16
422 427 7.065923 GGTAAAAAGACTGAACTGAACTGAACT 59.934 37.037 0.00 0.00 0.00 3.01
423 428 7.187480 GGTAAAAAGACTGAACTGAACTGAAC 58.813 38.462 0.00 0.00 0.00 3.18
424 429 6.036735 CGGTAAAAAGACTGAACTGAACTGAA 59.963 38.462 0.00 0.00 0.00 3.02
425 430 5.522460 CGGTAAAAAGACTGAACTGAACTGA 59.478 40.000 0.00 0.00 0.00 3.41
457 514 9.847224 AAGAAGAAGACAACCTTTTCTTATACA 57.153 29.630 0.00 0.00 40.27 2.29
459 516 9.204570 CGAAGAAGAAGACAACCTTTTCTTATA 57.795 33.333 0.00 0.00 40.27 0.98
461 518 6.018180 GCGAAGAAGAAGACAACCTTTTCTTA 60.018 38.462 0.00 0.00 40.27 2.10
508 574 2.880629 TAGCTCAGGCCCTGACTCCC 62.881 65.000 10.05 0.00 35.39 4.30
653 725 4.541779 CGGAGCAAATCAGCTAGTAGTAG 58.458 47.826 0.00 0.00 46.75 2.57
825 898 1.736681 GCACCAGATTCAGCAAGACTC 59.263 52.381 0.00 0.00 0.00 3.36
857 957 4.455606 CTCTTGCTAACCCCAATTCCTAG 58.544 47.826 0.00 0.00 0.00 3.02
875 975 2.514458 ATGCACGGAAAATCCCTCTT 57.486 45.000 0.00 0.00 31.13 2.85
876 976 2.025887 AGAATGCACGGAAAATCCCTCT 60.026 45.455 0.00 0.00 31.13 3.69
877 977 2.369394 AGAATGCACGGAAAATCCCTC 58.631 47.619 0.00 0.00 31.13 4.30
878 978 2.514458 AGAATGCACGGAAAATCCCT 57.486 45.000 0.00 0.00 31.13 4.20
879 979 2.033424 GCTAGAATGCACGGAAAATCCC 59.967 50.000 0.00 0.00 31.13 3.85
880 980 2.033424 GGCTAGAATGCACGGAAAATCC 59.967 50.000 0.00 0.00 34.04 3.01
881 981 2.945668 AGGCTAGAATGCACGGAAAATC 59.054 45.455 0.00 0.00 34.04 2.17
882 982 3.004752 AGGCTAGAATGCACGGAAAAT 57.995 42.857 0.00 0.00 34.04 1.82
883 983 2.489938 AGGCTAGAATGCACGGAAAA 57.510 45.000 0.00 0.00 34.04 2.29
884 984 2.027192 AGAAGGCTAGAATGCACGGAAA 60.027 45.455 0.00 0.00 34.04 3.13
887 987 1.134699 TCAGAAGGCTAGAATGCACGG 60.135 52.381 0.00 0.00 34.04 4.94
908 1008 3.881688 GCTATGAAGGTGTGCATCAGAAT 59.118 43.478 0.00 0.00 0.00 2.40
909 1009 3.054875 AGCTATGAAGGTGTGCATCAGAA 60.055 43.478 0.00 0.00 30.51 3.02
910 1010 2.502947 AGCTATGAAGGTGTGCATCAGA 59.497 45.455 0.00 0.00 30.51 3.27
911 1011 2.612672 CAGCTATGAAGGTGTGCATCAG 59.387 50.000 0.00 0.00 44.52 2.90
912 1012 2.635714 CAGCTATGAAGGTGTGCATCA 58.364 47.619 0.00 0.00 44.52 3.07
920 1020 1.985159 TGTCCCAACAGCTATGAAGGT 59.015 47.619 0.40 0.00 0.00 3.50
921 1021 2.787473 TGTCCCAACAGCTATGAAGG 57.213 50.000 0.40 0.00 0.00 3.46
965 1065 1.540267 TGCCGGACAGTTAATTTGGG 58.460 50.000 5.05 0.00 0.00 4.12
979 1079 1.283793 CTGCTCACAAGTTTGCCGG 59.716 57.895 0.00 0.00 0.00 6.13
1006 1109 4.838486 CCTCGTCGAGCTCGCCAC 62.838 72.222 30.97 22.71 39.60 5.01
1021 1124 2.035940 AAGCCTCCTCGACGTCCT 59.964 61.111 10.58 0.00 0.00 3.85
1022 1125 2.182030 CAAGCCTCCTCGACGTCC 59.818 66.667 10.58 0.00 0.00 4.79
1023 1126 2.507324 GCAAGCCTCCTCGACGTC 60.507 66.667 5.18 5.18 0.00 4.34
1024 1127 4.421479 CGCAAGCCTCCTCGACGT 62.421 66.667 0.00 0.00 0.00 4.34
1025 1128 3.916392 AACGCAAGCCTCCTCGACG 62.916 63.158 0.00 0.00 45.62 5.12
1026 1129 1.668151 AAACGCAAGCCTCCTCGAC 60.668 57.895 0.00 0.00 45.62 4.20
1027 1130 1.667830 CAAACGCAAGCCTCCTCGA 60.668 57.895 0.00 0.00 45.62 4.04
1028 1131 1.961277 ACAAACGCAAGCCTCCTCG 60.961 57.895 0.00 0.00 45.62 4.63
1029 1132 1.576421 CACAAACGCAAGCCTCCTC 59.424 57.895 0.00 0.00 45.62 3.71
1138 1241 5.319140 TCAATCTTGCAATGAATCCACAG 57.681 39.130 0.00 0.00 0.00 3.66
1151 1254 4.201950 ACCAATACGAGCATTCAATCTTGC 60.202 41.667 0.00 0.00 39.17 4.01
1187 1290 5.503927 ACATGAACAGAAACTCCTGCATAT 58.496 37.500 0.00 0.00 37.68 1.78
1194 1297 5.106396 CCATTGAGACATGAACAGAAACTCC 60.106 44.000 0.00 0.00 0.00 3.85
1215 1318 7.114754 CCTAACATTATCAGCATGGATACCAT 58.885 38.462 0.00 0.00 46.37 3.55
1236 1339 1.406539 GCATTCGGTCGACCTACCTAA 59.593 52.381 30.92 17.01 37.39 2.69
1244 1347 1.291877 AACTGCTGCATTCGGTCGAC 61.292 55.000 7.13 7.13 0.00 4.20
1253 1356 1.829096 TGGCACACAACTGCTGCAT 60.829 52.632 1.31 0.00 37.33 3.96
1339 1442 9.712305 GGCAGTTCTTCATACATACAGTATATT 57.288 33.333 0.00 0.00 41.47 1.28
1340 1443 8.870116 TGGCAGTTCTTCATACATACAGTATAT 58.130 33.333 0.00 0.00 41.47 0.86
1341 1444 8.141909 GTGGCAGTTCTTCATACATACAGTATA 58.858 37.037 0.00 0.00 41.47 1.47
1342 1445 6.986817 GTGGCAGTTCTTCATACATACAGTAT 59.013 38.462 0.00 0.00 44.20 2.12
1343 1446 6.154534 AGTGGCAGTTCTTCATACATACAGTA 59.845 38.462 0.00 0.00 37.06 2.74
1344 1447 5.046304 AGTGGCAGTTCTTCATACATACAGT 60.046 40.000 0.00 0.00 0.00 3.55
1345 1448 5.423015 AGTGGCAGTTCTTCATACATACAG 58.577 41.667 0.00 0.00 0.00 2.74
1346 1449 5.420725 AGTGGCAGTTCTTCATACATACA 57.579 39.130 0.00 0.00 0.00 2.29
1347 1450 7.843490 TTAAGTGGCAGTTCTTCATACATAC 57.157 36.000 11.55 0.00 0.00 2.39
1455 1558 1.421268 TCTGTGCAACCCAGATGAAGT 59.579 47.619 1.56 0.00 34.12 3.01
1456 1559 1.808945 GTCTGTGCAACCCAGATGAAG 59.191 52.381 8.57 0.00 40.79 3.02
1531 1634 6.385843 AGATATCTGATAAGCAGCAAGTACG 58.614 40.000 3.89 0.00 44.52 3.67
1536 1639 9.618890 AAACTAAAGATATCTGATAAGCAGCAA 57.381 29.630 5.86 0.00 44.52 3.91
1560 1666 6.176896 TGCCATAATTGTGACTACTGCTAAA 58.823 36.000 3.41 0.00 0.00 1.85
1561 1667 5.739959 TGCCATAATTGTGACTACTGCTAA 58.260 37.500 3.41 0.00 0.00 3.09
1580 1686 3.084536 TGGAAGCAGAATAACATGCCA 57.915 42.857 0.00 0.00 43.60 4.92
1620 1727 9.319143 AGAAGAGAAACCATAAGTGATAATTCG 57.681 33.333 0.00 0.00 0.00 3.34
1643 1750 8.597167 TCTGGATCTGAGTTTTCTTTATGAGAA 58.403 33.333 0.00 0.00 42.56 2.87
1645 1752 8.828644 CATCTGGATCTGAGTTTTCTTTATGAG 58.171 37.037 0.00 0.00 0.00 2.90
1649 1756 7.679783 TCACATCTGGATCTGAGTTTTCTTTA 58.320 34.615 0.00 0.00 0.00 1.85
1707 1814 5.598417 ACTTCAATTTTTGCAAGTAGAGGGT 59.402 36.000 0.00 0.00 32.88 4.34
1714 1821 4.875536 GGTGGAACTTCAATTTTTGCAAGT 59.124 37.500 0.00 0.00 36.74 3.16
1727 1834 4.157840 ACACTCAAAAACAGGTGGAACTTC 59.842 41.667 0.00 0.00 36.74 3.01
1736 1843 1.676006 AGGCGAACACTCAAAAACAGG 59.324 47.619 0.00 0.00 0.00 4.00
1753 1860 7.553881 TTAAGTTGCAGTCTTATCATAAGGC 57.446 36.000 0.20 0.20 0.00 4.35
1790 1899 7.414436 TCTGGTCAAAAATAAAAAGACAGTCG 58.586 34.615 0.00 0.00 0.00 4.18
1846 1955 7.496263 GGATTATTTAAGGACAGTCTTCTGGTC 59.504 40.741 0.00 0.00 45.14 4.02
1847 1956 7.182930 AGGATTATTTAAGGACAGTCTTCTGGT 59.817 37.037 0.00 0.00 45.14 4.00
1848 1957 7.569240 AGGATTATTTAAGGACAGTCTTCTGG 58.431 38.462 0.00 0.00 45.14 3.86
1849 1958 9.454859 AAAGGATTATTTAAGGACAGTCTTCTG 57.545 33.333 0.00 0.00 46.18 3.02
1868 1977 9.495382 AGTCTTCTGGTAAGTAGATAAAGGATT 57.505 33.333 0.00 0.00 33.05 3.01
1869 1978 9.495382 AAGTCTTCTGGTAAGTAGATAAAGGAT 57.505 33.333 0.00 0.00 33.05 3.24
1870 1979 8.896722 AAGTCTTCTGGTAAGTAGATAAAGGA 57.103 34.615 0.00 0.00 33.05 3.36
1871 1980 9.589111 GAAAGTCTTCTGGTAAGTAGATAAAGG 57.411 37.037 0.00 0.00 33.05 3.11
1872 1981 9.589111 GGAAAGTCTTCTGGTAAGTAGATAAAG 57.411 37.037 0.00 0.00 33.05 1.85
1873 1982 9.096823 TGGAAAGTCTTCTGGTAAGTAGATAAA 57.903 33.333 0.00 0.00 33.05 1.40
1874 1983 8.660295 TGGAAAGTCTTCTGGTAAGTAGATAA 57.340 34.615 0.00 0.00 33.05 1.75
1875 1984 8.840200 ATGGAAAGTCTTCTGGTAAGTAGATA 57.160 34.615 0.00 0.00 33.05 1.98
1876 1985 7.741554 ATGGAAAGTCTTCTGGTAAGTAGAT 57.258 36.000 0.00 0.00 33.05 1.98
1877 1986 8.660295 TTATGGAAAGTCTTCTGGTAAGTAGA 57.340 34.615 0.00 0.00 0.00 2.59
1878 1987 9.892130 ATTTATGGAAAGTCTTCTGGTAAGTAG 57.108 33.333 0.00 0.00 0.00 2.57
1892 2001 9.289782 GTAGATGCAGGATTATTTATGGAAAGT 57.710 33.333 0.00 0.00 0.00 2.66
1921 2030 8.966868 TCAAAAATAAAAAGACAGTCTTCTGGT 58.033 29.630 16.44 5.00 45.14 4.00
1922 2031 9.237846 GTCAAAAATAAAAAGACAGTCTTCTGG 57.762 33.333 16.44 0.30 45.14 3.86
1924 2033 8.966868 TGGTCAAAAATAAAAAGACAGTCTTCT 58.033 29.630 16.44 9.32 35.27 2.85
1926 2035 8.966868 TCTGGTCAAAAATAAAAAGACAGTCTT 58.033 29.630 10.27 10.27 38.59 3.01
1927 2036 8.519799 TCTGGTCAAAAATAAAAAGACAGTCT 57.480 30.769 0.00 0.00 0.00 3.24
1928 2037 9.237846 CTTCTGGTCAAAAATAAAAAGACAGTC 57.762 33.333 0.00 0.00 0.00 3.51
1929 2038 8.966868 TCTTCTGGTCAAAAATAAAAAGACAGT 58.033 29.630 0.00 0.00 0.00 3.55
1930 2039 9.237846 GTCTTCTGGTCAAAAATAAAAAGACAG 57.762 33.333 0.00 0.00 39.70 3.51
1932 2041 9.237846 CAGTCTTCTGGTCAAAAATAAAAAGAC 57.762 33.333 0.00 0.00 40.04 3.01
1934 2043 9.237846 GACAGTCTTCTGGTCAAAAATAAAAAG 57.762 33.333 0.00 0.00 45.14 2.27
1936 2045 7.340743 TGGACAGTCTTCTGGTCAAAAATAAAA 59.659 33.333 0.00 0.00 45.14 1.52
1939 2048 5.935945 TGGACAGTCTTCTGGTCAAAAATA 58.064 37.500 0.00 0.00 45.14 1.40
1954 2364 4.454678 TGCAGGATCATTTATGGACAGTC 58.545 43.478 0.00 0.00 0.00 3.51
1968 2378 5.303078 TCTTCTGGTAAGTAGATGCAGGATC 59.697 44.000 0.00 0.00 0.00 3.36
1972 2382 5.105554 ACAGTCTTCTGGTAAGTAGATGCAG 60.106 44.000 0.00 0.00 45.14 4.41
1981 2391 8.622948 AAATAAAAGGACAGTCTTCTGGTAAG 57.377 34.615 0.00 0.00 45.14 2.34
1982 2392 8.990163 AAAATAAAAGGACAGTCTTCTGGTAA 57.010 30.769 0.00 0.00 45.14 2.85
1983 2393 8.846211 CAAAAATAAAAGGACAGTCTTCTGGTA 58.154 33.333 0.00 0.00 45.14 3.25
1984 2394 7.559897 TCAAAAATAAAAGGACAGTCTTCTGGT 59.440 33.333 0.00 0.00 45.14 4.00
1985 2395 7.862873 GTCAAAAATAAAAGGACAGTCTTCTGG 59.137 37.037 0.00 0.00 45.14 3.86
1986 2396 7.862873 GGTCAAAAATAAAAGGACAGTCTTCTG 59.137 37.037 0.00 0.00 46.18 3.02
1987 2397 7.559897 TGGTCAAAAATAAAAGGACAGTCTTCT 59.440 33.333 0.00 0.00 0.00 2.85
1988 2398 7.712797 TGGTCAAAAATAAAAGGACAGTCTTC 58.287 34.615 0.00 0.00 0.00 2.87
1989 2399 7.559897 TCTGGTCAAAAATAAAAGGACAGTCTT 59.440 33.333 0.00 0.00 0.00 3.01
1990 2400 7.060421 TCTGGTCAAAAATAAAAGGACAGTCT 58.940 34.615 0.00 0.00 0.00 3.24
1991 2401 7.272037 TCTGGTCAAAAATAAAAGGACAGTC 57.728 36.000 0.00 0.00 0.00 3.51
1992 2402 7.559897 TCTTCTGGTCAAAAATAAAAGGACAGT 59.440 33.333 0.00 0.00 0.00 3.55
1993 2403 7.862873 GTCTTCTGGTCAAAAATAAAAGGACAG 59.137 37.037 0.00 0.00 0.00 3.51
1994 2404 7.559897 AGTCTTCTGGTCAAAAATAAAAGGACA 59.440 33.333 0.00 0.00 0.00 4.02
1995 2405 7.862873 CAGTCTTCTGGTCAAAAATAAAAGGAC 59.137 37.037 0.00 0.00 37.97 3.85
1996 2406 7.559897 ACAGTCTTCTGGTCAAAAATAAAAGGA 59.440 33.333 0.47 0.00 45.14 3.36
1997 2407 7.716612 ACAGTCTTCTGGTCAAAAATAAAAGG 58.283 34.615 0.47 0.00 45.14 3.11
1998 2408 7.862873 GGACAGTCTTCTGGTCAAAAATAAAAG 59.137 37.037 0.00 0.00 45.14 2.27
1999 2409 7.559897 AGGACAGTCTTCTGGTCAAAAATAAAA 59.440 33.333 0.00 0.00 45.14 1.52
2000 2410 7.060421 AGGACAGTCTTCTGGTCAAAAATAAA 58.940 34.615 0.00 0.00 45.14 1.40
2001 2411 6.601332 AGGACAGTCTTCTGGTCAAAAATAA 58.399 36.000 0.00 0.00 45.14 1.40
2002 2412 6.187727 AGGACAGTCTTCTGGTCAAAAATA 57.812 37.500 0.00 0.00 45.14 1.40
2003 2413 5.053978 AGGACAGTCTTCTGGTCAAAAAT 57.946 39.130 0.00 0.00 45.14 1.82
2004 2414 4.503714 AGGACAGTCTTCTGGTCAAAAA 57.496 40.909 0.00 0.00 45.14 1.94
2005 2415 4.503714 AAGGACAGTCTTCTGGTCAAAA 57.496 40.909 0.00 0.00 45.14 2.44
2006 2416 5.623956 TTAAGGACAGTCTTCTGGTCAAA 57.376 39.130 0.00 0.00 45.14 2.69
2007 2417 5.623956 TTTAAGGACAGTCTTCTGGTCAA 57.376 39.130 0.00 0.00 45.14 3.18
2008 2418 5.825593 ATTTAAGGACAGTCTTCTGGTCA 57.174 39.130 0.00 0.00 45.14 4.02
2009 2419 7.496263 GGATTATTTAAGGACAGTCTTCTGGTC 59.504 40.741 0.00 0.00 45.14 4.02
2010 2420 7.182930 AGGATTATTTAAGGACAGTCTTCTGGT 59.817 37.037 0.00 0.00 45.14 4.00
2011 2421 7.569240 AGGATTATTTAAGGACAGTCTTCTGG 58.431 38.462 0.00 0.00 45.14 3.86
2012 2422 9.535878 GTAGGATTATTTAAGGACAGTCTTCTG 57.464 37.037 0.00 0.00 46.18 3.02
2013 2423 9.268282 TGTAGGATTATTTAAGGACAGTCTTCT 57.732 33.333 0.00 0.00 0.00 2.85
2016 2426 9.440761 AGATGTAGGATTATTTAAGGACAGTCT 57.559 33.333 0.00 0.00 0.00 3.24
2030 2440 9.352191 GTCTTCTGGTAAGTAGATGTAGGATTA 57.648 37.037 0.00 0.00 33.05 1.75
2031 2441 8.062536 AGTCTTCTGGTAAGTAGATGTAGGATT 58.937 37.037 0.00 0.00 33.05 3.01
2032 2442 7.504238 CAGTCTTCTGGTAAGTAGATGTAGGAT 59.496 40.741 0.00 0.00 37.97 3.24
2033 2443 6.829298 CAGTCTTCTGGTAAGTAGATGTAGGA 59.171 42.308 0.00 0.00 37.97 2.94
2034 2444 6.603997 ACAGTCTTCTGGTAAGTAGATGTAGG 59.396 42.308 0.47 0.00 45.14 3.18
2035 2445 7.201750 GGACAGTCTTCTGGTAAGTAGATGTAG 60.202 44.444 0.00 0.00 45.14 2.74
2036 2446 6.602406 GGACAGTCTTCTGGTAAGTAGATGTA 59.398 42.308 0.00 0.00 45.14 2.29
2037 2447 5.419471 GGACAGTCTTCTGGTAAGTAGATGT 59.581 44.000 0.00 0.00 45.14 3.06
2038 2448 5.419155 TGGACAGTCTTCTGGTAAGTAGATG 59.581 44.000 0.00 0.00 45.14 2.90
2039 2449 5.580998 TGGACAGTCTTCTGGTAAGTAGAT 58.419 41.667 0.00 0.00 45.14 1.98
2040 2450 4.994282 TGGACAGTCTTCTGGTAAGTAGA 58.006 43.478 0.00 0.00 45.14 2.59
2041 2451 5.923733 ATGGACAGTCTTCTGGTAAGTAG 57.076 43.478 0.00 0.00 45.14 2.57
2042 2452 7.786046 TTTATGGACAGTCTTCTGGTAAGTA 57.214 36.000 0.00 0.00 45.14 2.24
2043 2453 6.681729 TTTATGGACAGTCTTCTGGTAAGT 57.318 37.500 0.00 0.00 45.14 2.24
2044 2454 9.838339 ATTATTTATGGACAGTCTTCTGGTAAG 57.162 33.333 0.00 0.00 45.14 2.34
2045 2455 9.832445 GATTATTTATGGACAGTCTTCTGGTAA 57.168 33.333 0.00 0.00 45.14 2.85
2046 2456 8.429641 GGATTATTTATGGACAGTCTTCTGGTA 58.570 37.037 0.00 0.00 45.14 3.25
2047 2457 7.127955 AGGATTATTTATGGACAGTCTTCTGGT 59.872 37.037 0.00 0.00 45.14 4.00
2048 2458 7.443575 CAGGATTATTTATGGACAGTCTTCTGG 59.556 40.741 0.00 0.00 45.14 3.86
2049 2459 7.041508 GCAGGATTATTTATGGACAGTCTTCTG 60.042 40.741 0.00 0.00 46.18 3.02
2050 2460 6.995091 GCAGGATTATTTATGGACAGTCTTCT 59.005 38.462 0.00 0.00 0.00 2.85
2051 2461 6.767902 TGCAGGATTATTTATGGACAGTCTTC 59.232 38.462 0.00 0.00 0.00 2.87
2052 2462 6.662755 TGCAGGATTATTTATGGACAGTCTT 58.337 36.000 0.00 0.00 0.00 3.01
2053 2463 6.252599 TGCAGGATTATTTATGGACAGTCT 57.747 37.500 0.00 0.00 0.00 3.24
2054 2464 6.939163 AGATGCAGGATTATTTATGGACAGTC 59.061 38.462 0.00 0.00 0.00 3.51
2055 2465 6.845908 AGATGCAGGATTATTTATGGACAGT 58.154 36.000 0.00 0.00 0.00 3.55
2056 2466 8.099537 AGTAGATGCAGGATTATTTATGGACAG 58.900 37.037 0.00 0.00 0.00 3.51
2057 2467 7.977818 AGTAGATGCAGGATTATTTATGGACA 58.022 34.615 0.00 0.00 0.00 4.02
2058 2468 8.854614 AAGTAGATGCAGGATTATTTATGGAC 57.145 34.615 0.00 0.00 0.00 4.02
2059 2469 9.866655 AAAAGTAGATGCAGGATTATTTATGGA 57.133 29.630 0.00 0.00 0.00 3.41
2063 2473 8.840321 GCAGAAAAGTAGATGCAGGATTATTTA 58.160 33.333 0.00 0.00 38.54 1.40
2064 2474 7.559170 AGCAGAAAAGTAGATGCAGGATTATTT 59.441 33.333 0.00 0.00 41.14 1.40
2065 2475 7.059156 AGCAGAAAAGTAGATGCAGGATTATT 58.941 34.615 0.00 0.00 41.14 1.40
2066 2476 6.599445 AGCAGAAAAGTAGATGCAGGATTAT 58.401 36.000 0.00 0.00 41.14 1.28
2067 2477 5.994250 AGCAGAAAAGTAGATGCAGGATTA 58.006 37.500 0.00 0.00 41.14 1.75
2068 2478 4.853007 AGCAGAAAAGTAGATGCAGGATT 58.147 39.130 0.00 0.00 41.14 3.01
2069 2479 4.500499 AGCAGAAAAGTAGATGCAGGAT 57.500 40.909 0.00 0.00 41.14 3.24
2070 2480 3.988976 AGCAGAAAAGTAGATGCAGGA 57.011 42.857 0.00 0.00 41.14 3.86
2071 2481 4.456911 TCAAAGCAGAAAAGTAGATGCAGG 59.543 41.667 0.00 0.00 41.14 4.85
2072 2482 5.618056 TCAAAGCAGAAAAGTAGATGCAG 57.382 39.130 0.00 0.00 41.14 4.41
2073 2483 5.942236 AGATCAAAGCAGAAAAGTAGATGCA 59.058 36.000 0.00 0.00 41.14 3.96
2074 2484 6.434018 AGATCAAAGCAGAAAAGTAGATGC 57.566 37.500 0.00 0.00 38.97 3.91
2075 2485 9.160496 ACTTAGATCAAAGCAGAAAAGTAGATG 57.840 33.333 0.00 0.00 0.00 2.90
2115 2525 7.309012 GGCATCAGCAACATGATTCATACTATT 60.309 37.037 0.00 0.00 44.61 1.73
2129 2539 2.794103 ACAATACAGGCATCAGCAACA 58.206 42.857 0.00 0.00 44.61 3.33
2243 2661 5.777732 AGTGAGAGTTCAGACTTACAGGATT 59.222 40.000 0.00 0.00 35.88 3.01
2246 2664 5.461032 AAGTGAGAGTTCAGACTTACAGG 57.539 43.478 0.00 0.00 35.88 4.00
2317 2743 3.437049 GGTGTTTAGCTGAAGATGTGGTC 59.563 47.826 0.00 0.00 0.00 4.02
2370 2796 2.602211 CTCATAAGCTCAGCACTCAACG 59.398 50.000 0.00 0.00 0.00 4.10
2383 2809 7.256756 AGCAGTTTGATCATAACTCATAAGC 57.743 36.000 15.82 15.26 33.73 3.09
2394 2820 5.163581 GGATACAGCAAAGCAGTTTGATCAT 60.164 40.000 0.00 0.00 45.22 2.45
2397 2823 4.081406 TGGATACAGCAAAGCAGTTTGAT 58.919 39.130 2.79 0.00 43.84 2.57
2435 2873 1.130054 TCTGCTTGCAGGAGGGAAGT 61.130 55.000 20.62 0.00 45.83 3.01
2444 2882 1.376942 CCTGACCCTCTGCTTGCAG 60.377 63.158 15.74 15.74 0.00 4.41
2550 2988 2.494073 GAGGACACTGAGAATCTCGGTT 59.506 50.000 21.17 12.97 46.59 4.44
2592 3030 0.827368 CCTGCTGTCTTAGAGGACCC 59.173 60.000 0.00 0.00 35.54 4.46
2669 3107 2.079158 CTGCGAGAAGATGAAAGCCAA 58.921 47.619 0.00 0.00 0.00 4.52
2912 3350 3.689161 CCATTGCACAGAAGATCGGTAAA 59.311 43.478 0.00 0.00 0.00 2.01
3066 3504 2.228822 TCCGGTAACTACGACTGTTTCC 59.771 50.000 0.00 0.00 33.41 3.13
3080 3518 2.559668 AGATTCGTCTGTGTTCCGGTAA 59.440 45.455 0.00 0.00 0.00 2.85
3107 3545 8.837788 TCCTGTGATATGCTATCATTTAACTG 57.162 34.615 8.48 0.00 34.22 3.16
3174 3612 3.782656 TTAGAACAGGTCAGGGTTTCC 57.217 47.619 0.00 0.00 0.00 3.13
3212 3650 6.426937 GGAGAAAAGCACTGTAGTATTGAACA 59.573 38.462 0.00 0.00 0.00 3.18
3237 3675 7.441836 TGTATATTACTGGAGCTGGTGTATTG 58.558 38.462 0.00 0.00 0.00 1.90
3239 3677 6.782988 ACTGTATATTACTGGAGCTGGTGTAT 59.217 38.462 0.00 0.00 32.62 2.29
3240 3678 6.134055 ACTGTATATTACTGGAGCTGGTGTA 58.866 40.000 0.00 0.00 32.62 2.90
3242 3680 5.537300 ACTGTATATTACTGGAGCTGGTG 57.463 43.478 0.00 0.00 32.62 4.17
3259 3697 9.601810 AATGATCCTGAACTGGTATATACTGTA 57.398 33.333 12.54 0.00 0.00 2.74
3260 3698 8.497910 AATGATCCTGAACTGGTATATACTGT 57.502 34.615 12.54 9.03 0.00 3.55
3312 3779 8.132995 AGTTGTTACAAAGTTAGCCAATTACAC 58.867 33.333 0.00 0.00 0.00 2.90
3332 3799 5.335348 GGTTTATGCGTACCATTCAGTTGTT 60.335 40.000 2.73 0.00 35.34 2.83
3348 3815 4.271291 TCAAAAACGCCAAAAGGTTTATGC 59.729 37.500 0.00 0.00 35.44 3.14
3407 3874 5.062308 GTGAGCAGAACAAAACTAGATACCG 59.938 44.000 0.00 0.00 0.00 4.02
3409 3876 5.862323 TCGTGAGCAGAACAAAACTAGATAC 59.138 40.000 0.00 0.00 0.00 2.24
3434 3901 8.728833 CACTGAGAGATAAAAAGAAAAGCAGAT 58.271 33.333 0.00 0.00 0.00 2.90
3444 3911 5.163774 GCCTCTTGCACTGAGAGATAAAAAG 60.164 44.000 14.28 0.00 42.57 2.27
3452 3919 1.270732 ACAAGCCTCTTGCACTGAGAG 60.271 52.381 15.25 11.31 44.83 3.20
3498 3966 1.650528 AGGAACTCCTGGGTCTTCAG 58.349 55.000 0.00 0.00 46.55 3.02
3531 3999 0.169672 GCATGTGTCGCAAAGCAGAT 59.830 50.000 8.74 0.00 33.94 2.90
3805 4279 5.685068 TGTGATGTAACTTTTCACAATTGCG 59.315 36.000 5.05 0.00 44.85 4.85
4065 4542 5.713861 GCTATTCTGCCCTTGAATGGATTAT 59.286 40.000 0.00 0.00 35.36 1.28
4095 4572 3.922171 ACTCTGGAGAATTAAGGGCAG 57.078 47.619 4.49 0.00 0.00 4.85
4128 4605 6.978343 TGGACAACTAAATCTAACATTCGG 57.022 37.500 0.00 0.00 0.00 4.30
4183 4660 4.831107 AGCCTGTGTTTTTGTGAAATGTT 58.169 34.783 0.00 0.00 0.00 2.71
4236 4713 3.855255 TGTTTGTGATCCTTCCTGTGA 57.145 42.857 0.00 0.00 0.00 3.58
4320 4798 7.097834 GTGAAACTCTAGTTGTAGTAATGGCT 58.902 38.462 0.00 0.00 38.44 4.75
4359 4839 5.151297 TGCAATGAGAAGACAGTGTCATA 57.849 39.130 24.73 6.71 38.00 2.15
4367 4847 3.118482 GGAGAGGATGCAATGAGAAGACA 60.118 47.826 0.00 0.00 0.00 3.41
4467 4948 1.839354 TGGCTGACAATGGCTCAGATA 59.161 47.619 5.73 0.00 37.90 1.98
4515 4996 4.100498 GGTAGTTTATGAACCTCCATCCGA 59.900 45.833 0.00 0.00 36.39 4.55
4536 5017 3.988459 GCGTTTGCGATAACATGGT 57.012 47.368 0.00 0.00 41.33 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.