>input_sequence_30388
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--------------------------------------------------------------ATGGCGGTGGCGAGCTCG
ACGAGGACGTCGAGGAGGCTTGCGTTTGTGCTACTCGTGCTGGCCTTTTCGGCCGCGCTCGCAGAGAGCAGAGATGCATA
TATGAGGAGCGCAGATCGATATGCCTGCATACTGAGTAAGCTGTGGATTCATTGCAAGATTGAATGCTCGTATTGGTTGT
TCTTGTTTGATATGCAGGAGTTTCTGTTCATGTCTCAATGGTATCCATGCTGATAATGTTAGGTAGGTCGACCGAATGCA
GCAGTTGTGTGCCACCAATCCACTTTTCTGGAAAATACTTGCTAGAAAACCATCTGAAACATGTGATGCTTGCTACTGTA
TAATATACTGTATGTATGAAGAACTGCCACTTAATTTTTGACCAAAATACTAATGGAGTACTATCTTTCAATTTGGTTTT
GTGCTGATTCCAGAAATAATTCTGCGTCTATTTTTCTACTTCATCTGGGTTGCACAGACACATACAAGTATGAATTGTGT
TGTTGATGCCTGTGTTGTACAAACTATGAATTGCGTACTTGCTGCTTATCA---GATATCTTTAGTTTAGCAGTAGTCAC
AATTATGGCATGTTATTCTGCTTCCA-TTCACTGATTCTGAAAGTCCGAATTATCACTTATGGTTTCTCTTCTCATAAAG
AAAACTCAGATCCAGATGTGATAAATTATGCTCACCACATCTTCAGCTAAACAACCCTCTACTTGCAAAAATTGAAGTTC
CACCTGTTTTTGAGTGTTCGCCTTATGATAAG-ACTGCAACTTAATTTTTG-ACCAGACGACTGTCTTTTTATTTTTGAC
CAGAAGACTGTCCCTAAATAATCCTGCATCTACTGACCAGAAGACTGTCCTTAAATAATCCTTTATCTACTTACCAGAAG
ACTTTCCATAAATAATCCTGCATCTACTTACCAGAAGACTGTCTTTTT--------------------------------
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-----------------------------ATTTTTGACCAGAAGACTGTCCATAAATGATCCTGCATCTACTTACCAGAA
GACTGTCCTTTTATTTTTGACCAGAAGACTGTCCTTAAATAATCCTACATCTACTTACCAGAAGACTGTCCATAAATAAT
CCTGCATCTACTTTTCTGCTTTGATCTAAGTTGCAAAGACACATAATAGTATGAATCATGTTGCTGATGCCTGTATTGTA
AGAAACTAAGAATTGCTTTACTTGCTGC--------CTGTTAGATATATTTAGCTGGAAGTAGTCACAATTAGGGCATGT
AAATTCTGCTTCCATTTACTAATCCTGTAAGTCTGAACTCTCACTTATAGCTACTC--------ATAAAGATAACTGTGA
TCCTGCTGTGACAAATTATGCTGACCACATCTTCAGCTAAACACCCCTCTCCTTGTAAAAACTCAAGTTCCACAGCGTTG
AGTGCTGAGCTTATGAGTTATGATCAAACTGCTTTGCTGTATC------------CATTTCAGCCCAGGAAAACTTCCCT
CCTGCAAGCAGAGGGTCAGGATTAACTTCGGCAAACGGAAAGCTATGTGTACTATGTGAGCAATACTCAACCGAAGCTCT
GGTCTACCTGCGACAAAACGAAACCCAAACCGAGATTCTCAGTGTCCTCCACCACACGTGTGCAAGCCTGGGTCCTCTAA
GACAGCAGGTATGGCTAAATGGCAATGCCTGCCATGCATAGCATAATTGTAATCTCAGTAAACTGATTGGCTTTCATCTT
CTCGCAGTGCATCACGCTGGTCGACTACTACATTCCCGCTTTCTTCTTGGAGGTTTCTGTGGTTAAACCTGAAGAGCTCT
GTGAGTCGGCGCACCTGTGCCCAAAGGGGGCGGCGACTCTGTCGTCCACACGAGGGGATGCCTGTGGTCTATGCCATCAT
GTTCTTGTTGAAGTTCTTATGATGCTTAAGGATCCCAACACCAAGGTAACTGTCATGTTCTCAATCGCATTTACCGATCT
TCTGTGCAATGGTTGGCTTGTACTTTGCACATGGCTAATGCTTTCTTGTGCATGTCGCGATTTTTTGCAGCTGGAGATAG
TCGGGCTTCTTTTCAAAACATGCAGCAAGGCGAAGAACTATGAACCGCAGGTGAGTTAAGTTCGGAAACAGTCGTAGTTA
CCGGAACACAGACGAATCTGCCTGCAGTTAAATGATAGCATATCACAGGATCACCTAGTTCTCATGGTCTTTTGTACAAC
AGAAATAACTGGGAAACCCTGACCTGTTCTAATGCTTCTGAAAGTTAGCTGTTCAATACTACAGTGCTTTTCTCCAATAC
ACCAGCTCCAGTAATATACAGTATATACCAGTTCAGGATCATTAGAACTTTAGATGTTGC--------------------
---------TAACTATTTGTGTAATTGGCTAACTTTGTAACAACTGAATGGTACGCATAAACCTTTTGGCGTTTTTGACG
CTTTGCAAGGTATCTAGTTTCTTGTTAAAAAAACGGTATCTAGTTTTGTTCTGCTCACGAATCTGCTTTTCTTTTTATC-
TCTCAGTGCAAGAGGCTTGTCCTTGACTACATCCCACTGATTCTGCTGAAGACCCAGGAGTTCCTTGAGACGACGGACAT
CTGCTTTGCGACACATGCCTGTAAAACAGGCATGCAAGCAACCATTCCTCTCTCCGCCGCTTTGTGA-------------
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>chr3A_1_TraesCS3A01G097300
AAGACAAACAGTAGAAGTCTAATTAAAAAACAGAAAAAAA-ACTGGTTAAGATAAAGTTAAATTAATATCAACCAAACTT
TAAGATCCATTGATGAAACAGTTTGACGTGTATGTGAAGTAC-AAAGAAATCGAGCGAATTTACCCTGCTAAATGTCTTT
TTCGACATTAAAGCGTATAACACCATTAAATTTTAACGAAATATTATTTTAATTAGGCTGCAACTGCTATATTTGCATTA
ATATCCATTCTTCGGGATAAGATTTTCTTTTACTAATAGTTATGTCATAAAAATATTAAATACATAATATGAATGTATTT
CAAAATTTATGTAATCTCACTTTATATGCAAAGTTCCAAAAAAAGC-T-ATGACAGATGATTAATGAACCGTGGGTGCAC
TTCACACGGGTCACACAGTTCAGTTCAGTT--------------------------------------------------
--CAGTTCAGTTCAGTCTTTTTACCGCTTACCTTGTAT-----AAGAAAAGGTTGTCTTCTTCTTCGCCGCTTCCATCCA
TCC----ATCCTCGGGAGT-----CA-GGGCCTGAGCTAACCTCTTGGAGCTTTTACTCCCCGAGCTGCCCTCCCCCGTT
CCAAGAGCAAATCAGCCGCAGAGGGGAGCGGCCGCAGAGCGAGTCAACCAGGTGAGCTGCTCCGCGATTCCCCTGAGAGA
ATATC-TACTACTAGCTGATTTGCTCCGCCCTGCCCGGTTGGGTTGGACCCCCCATGTTCATCCTGCATCTACCGAGCGA
CGCTCGATTCGAGCAGCATCCGCTGCACGTTTTTGGATCTCGTCGGGCCTTGTTCTGGCGTGGGGACGGAAGATTGTTCT
GGCGGTGCCACAAGAACGAGTCTTGCTGAATCTGGTGCTCA---------------------------TTGACTTTCTAG
GAATTGGGGTTAGCAAGAGGGATTTTCCGTGCATTCTAGCCTTCTGAATTCTGATGCACACCTTCATAGCTGTTGGGACA
TCTCCCTGTTTTGTGCTCTGGGTCCCCAAATTAACTGTCC---GGCAAACTTGTGAGCAGGCATGGCGGTGGCGAGCTCG
ACGAGGACGTCGAGGAGGCTTGCGTTTGTGCTACTCGTGCTGGCCTTTTCGGCCGCGCTCGCAGAGAGCAGAGATGCATA
TATGAGGAGCGCAGATCGATATGCCTGCATACTGAGTAAGCTGTGGATTCATTGCAAGATTGAATGCTCGTATTGGTTGT
TCTTGTTTGATATGCAGGAGTTTCTGTTCATGTCTCAATGGTATCCATGCTGATAATGTTAGGTAGGTCGACCGAATGCA
GCAGTTGTGTGCCACCAATCCACTTTTCTGGAAAATACTTGCTAGAAAACCATCTGAAACATGTGATGCTTGCTACTGTA
TAATATACTGTATGTATGAAGAACTGCCACTTAATTTTTGACCAAAATACTAATGGAGTACTATCTTTCAATTTGGTTTT
GTGCTGATTCCAGAAATAATTCTGCGTCTATTTTTCTACTTCATCTGGGTTGCACAGACACATACAAGTATGAATTGTGT
TGTTGATGCCTGTGTTGTACAAACTATGAATTGCGTACTTGCTGCTTATCA---GATATCTTTAGTTTAGCAGTAGTCAC
AATTATGGCATGTTATTCTGCTTCCA-TTCACTGATTCTGAAAGTCCGAATTATCACTTATGGTTTCTCTTCTCATAAAG
AAAACTCAGATCCAGATGTGATAAATTATGCTCACCACATCTTCAGCTAAACAACCCTCTACTTGCAAAAATTGAAGTTC
CACCTGTTTTTGAGTGTTCGCCTTATGATAAG-ACTGCAACTTAATTTTTG-ACCAGACGACTGTCTTTTTATTTTTGAC
CAGAAGACTGTCCCTAAATAATCCTGCATCTACTGACCAGAAGACTGTCCTTAAATAATCCTTTATCTACTTACCAGAAG
ACTTTCCATAAATAATCCTGCATCTACTTACCAGAAGACTGTCTTTTT--------------------------------
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-----------------------------ATTTTTGACCAGAAGACTGTCCATAAATGATCCTGCATCTACTTACCAGAA
GACTGTCCTTTTATTTTTGACCAGAAGACTGTCCTTAAATAATCCTACATCTACTTACCAGAAGACTGTCCATAAATAAT
CCTGCATCTACTTTTCTGCTTTGATCTAAGTTGCAAAGACACATAATAGTATGAATCATGTTGCTGATGCCTGTATTGTA
AGAAACTAAGAATTGCTTTACTTGCTGC--------CTGTTAGATATATTTAGCTGGAAGTAGTCACAATTAGGGCATGT
AAATTCTGCTTCCATTTACTAATCCTGTAAGTCTGAACTCTCACTTATAGCTACTC--------ATAAAGATAACTGTGA
TCCTGCTGTGACAAATTATGCTGACCACATCTTCAGCTAAACACCCCTCTCCTTGTAAAAACTCAAGTTCCACAGCGTTG
AGTGCTGAGCTTATGAGTTATGATCAAACTGCTTTGCTGTATC------------CATTTCAGCCCAGGAAAACTTCCCT
CCTGCAAGCAGAGGGTCAGGATTAACTTCGGCAAACGGAAAGCTATGTGTACTATGTGAGCAATACTCAACCGAAGCTCT
GGTCTACCTGCGACAAAACGAAACCCAAACCGAGATTCTCAGTGTCCTCCACCACACGTGTGCAAGCCTGGGTCCTCTAA
GACAGCAGGTATGGCTAAATGGCAATGCCTGCCATGCATAGCATAATTGTAATCTCAGTAAACTGATTGGCTTTCATCTT
CTCGCAGTGCATCACGCTGGTCGACTACTACATTCCCGCTTTCTTCTTGGAGGTTTCTGTGGTTAAACCTGAAGAGCTCT
GTGAGTCGGCGCACCTGTGCCCAAAGGGGGCGGCGACTCTGTCGTCCACACGAGGGGATGCCTGTGGTCTATGCCATCAT
GTTCTTGTTGAAGTTCTTATGATGCTTAAGGATCCCAACACCAAGGTAACTGTCATGTTCTCAATCGCATTTACCGATCT
TCTGTGCAATGGTTGGCTTGTACTTTGCACATGGCTAATGCTTTCTTGTGCATGTCGCGATTTTTTGCAGCTGGAGATAG
TCGGGCTTCTTTTCAAAACATGCAGCAAGGCGAAGAACTATGAACCGCAGGTGAGTTAAGTTCGGAAACAGTCGTAGTTA
CCGGAACACAGACGAATCTGCCTGCAGTTAAATGATAGCATATCACAGGATCACCTAGTTCTCATGGTCTTTTGTACAAC
AGAAATAACTGGGAAACCCTGACCTGTTCTAATGCTTCTGAAAGTTAGCTGTTCAATACTACAGTGCTTTTCTCCAATAC
ACCAGCTCCAGTAATATACAGTATATACCAGTTCAGGATCATTAGAACTTTAGATGTTGC--------------------
---------TAACTATTTGTGTAATTGGCTAACTTTGTAACAACTGAATGGTACGCATAAACCTTTTGGCGTTTTTGACG
CTTTGCAAGGTATCTAGTTTCTTGTTAAAAAAACGGTATCTAGTTTTGTTCTGCTCACGAATCTGCTTTTCTTTTTATC-
TCTCAGTGCAAGAGGCTTGTCCTTGACTACATCCCACTGATTCTGCTGAAGACCCAGGAGTTCCTTGAGACGACGGACAT
CTGCTTTGCGACACATGCCTGTAAAACAGGCATGCAAGCAACCATTCCTCTCTCCGCCGCTTTGTGAAGAACAAATATGT
AGGAATCATACAGGGGCAAAGAAGCCTGTAAATGTTCCTCCTGTATTTTGCTCAAGCACTGCCAAGCTATGAAACTT--G
GTTGTGCGAGGGTT----TGTACAATTTGAGCTCTGCTCTCTGAAGTTTATGCAACAAGCCAGCAGCTGTACTATCATTC
ATTTGCTCAGCACATAATCGTCTCAGAGCAGCATACTGCGCAATTGTGAAAAGTTACATCACATTGTATCTACTGGCTAT
ATATCCAGTCATGATGGTACTATTATTCAGTGTTCATGTCTTGCTTTGGCATTAGCAAGTGAAGCAATTTTTATTGGGAA
GGTAATCCTGGATTTTGATATGAAAAGATTGATGAGATTGGGTTGTTAACATACTT---GGTTCCAGAAATACACATTTC
AATTCACATTAAATTCTCCAGAGTTAGAAGTGAACTGAAGAAACTGAAAGTGTTAGATTTAATAATCCATTCAAGGGCAG
AATAGCACCAGCTGCCCTTAATTCTCCAGAGTTGGGAGTAACTACCGAATGTTAGATTTAGTTGTCCATTCAAGGCCAGA
CAGAATGTAGCTACCAGAGAACATTTCACAAAAACACAGGCTTAACTTGATAATTGAGTTGTCAAATGACACTCACAGGA
AGGATCACAAACAATGGTGCAGATCCAAGTCTT-GATGATTTAGACCCTAGTAGAAGGAAATATACACATCACAGCAAGC
CATTACTACAA--CTAGAGTTTCACACATCCATGTGCTTATGACACT-GTCTTCTCATTGCATCCTCTCCTTTCTGAGCC
TCTCAAGCTCCTTCACCATCTGCCAGTGCTCCAGGGAAAGGCTCTTCTCACCAAAGCTTGAGGCTGTTATCTGAGCCATT
GTCAGCCATCTGCACATCAGCGCAAAAAAAGTTAGTCGGATGGAGGTTCATAAACTACCATGTTATCGCAAACGCAACAT
GTTAGACGCCCAAGATTACCTGCTAAGTTCAGTGCAACCC
>chr3B_2
-AGACAAACAGTAGAAGTCTAATTCAAAAAAATAGAAAAAAACTGGTTAAGATAAAATGAAATTAATATCAACCAAACTT
TAAGACCCATTGACGTAACAGTTTGACGTGTATGTGAAGTATAAAAAAAATCGAGTGAATTTACCCTGCTAAATG-----
----ACATTAAAGCGTATAATACCATTAAATTTTAACGAAATATTGTTTTAATTAGGCTGCAACTGCTATATTTGCATTA
ATATTCATTCTTTGGGATAGGATTTTCTTTTACTAAGAGTTATGTCATAAAAATAATAGATAATTAATCCAAATGTACTT
TAAAATTTATGTAATCTCACTTTATATGCAAAGTTCCAAAAAAATATT-ATGACAGATGATTAATGGACA----------
---------CCATTTTGCTAGTTTGATTAAAAAAACATGAAAAAGGACAGGCTGCTACACTACAACAAATGAACAAACCA
CACAGTTCAGTTCAGTCTTTTTACAGCTTACTCCTACCTTGTAAAGAAAAGGTTGTCTTCTTCTTCGCCGCTTCCATCCA
TCC----ATCCTCAGGAGT-----CAGGGGCCTGAGCTAACCTCTTGGAGCTTTTACTCCCCGAGCTGCCCTCCCCCGTT
CCAAGAGCAAATCAGACGCCGAGGGGAGCGGCCGCAGAGCGAGTCAACCGGGTGAGCTGCTCCGCGATTCCCCTGAGAGA
ATATTTTACTACTTGTTGATTTGCTCTGCCCGGCCCGGCTGGGTTGGA-CCCCCATGTTCATCCTGCATCTACCGAGCGA
GGCTCGATTCAAGCAGCATCCGCTGCACGTTTTTGGATCGCGTCGGGCCTTGTTCCGGCGTGGGGACGGAAGCTTGCTCT
GGCGGTGCCACAAGAACAATTCTAGCTGAATCTGGAGCTCAGAACGTGTGTATGCAGATATGCATGTGTTGACTTTTTAG
GAATTGGGGTTAGCTG--------CTGCGTGCATTCTAGCCTTCTGA-----------------------TGTTGGGACA
TCTCCCTGTTTTGTGTCATGAGTCTCCAAATTAACTGTGTTCTGGCAAACTTGTGAGCAGGCATGGCGATGGCGAGCTCG
ACG---------AGGAGGCTTGCGTTTGTGCTACTCGTGCTGGCCTTTTCGGCCGCGCTCGCAGAGAGCAGAGATGCATA
TATGAGGAGCGCAAATCGATATGCCTGCATACTGAGTAAGTTGTGAATTCATTACAAGATCGAATGCTGGTATTGGTTAT
TCTTGTTTCTTATGCAAGAGTTTCTGTTCATGTCTCAGTGGTATCCATGCTGATAATGCTAGGTAGATCGACCGGGTGCA
GCAATTGTGTGCCACCGGTCCACTTTTCTGGAAAATAGTTGCTAGAAAACCATCTGAAAGCTGTGATCTTTGCTATAATA
----------TATGTACGAAGAACTGCCACTTAATTTTTGACCGAAATACTACTG--------TCTTTAGATTTGGTTTT
GTTCTGATTCCAGAAATAATTCTGCGTCTATTTTTCTGTTTCATCTGAGTTGCACAGACACATAGAAGTATGAATTGTGT
TGTTGATGCCTGTGTTGTACAAACTATGAATTGTGTACCCACTGCTTATTA---GATATCTTTAGC-TAGCAGTAGTCAC
AATTAGGGCATGTTATTCTGCTTCCT-TTCACTGATTCTGAAAGTCTGAATTATCACTTATGGTTTC-----TCACAAAG
AAAACTCAGATCCAAATGTGATAAATTATGTTCACCACATCTTCAGCCAAACACCCCTCTCCTTGCGAAAATTAAAGTCC
CA-CTGTTTTTGAGTGTTCACCTTATGATAAGAACTGCAACTTAATTTTTG-ACCAGAAGACTGTCTTTTTATTTTTGAG
CAGAAGACTGTCCCTAAATAATCCTGCATCTACT-------------------------------------TACCAGAAG
GCTGTCCATAAATAATCCTGCATCTACTTTTCTGCTTTTTTTTTGCGGGTG-----------------------------
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-----ATCTACTTTTCTGCTTTGATCTAAGTAGAAAAGACACATGGTAGTATGAATCACGTTGCTGATGCCTGTATTGTA
AGAAACTAAGAATTGCTTTACTTGCTGC--------CTGTTAGATACATTTAGCTGGAAGTAGTCACAATTAGGGCATGT
AAATTCTGCTTCCATTTACTGATTCTGTAAGTCTGAACTCTCACTTATAGCTACTCATAAAGTGATAAAGATAACTGTGA
TCCTGCTGTGACAAATTATGCTCACCACATCTTCAGCTAAACACCCCTCTCCTTGTAAAAACTCAAGTTCCACAGTGTTG
AGTGCTGACCTTATGAGTTGTGCTCAAACTGCTCTGCTGTATC------------CATTTCAGCCCAGGAAAGCTTCCCT
CTTGCAAGCAGAGGGGCAGGATTAACTTCGGCAAACGGAAAGCTGTGTGTACTATGTGAGCAGTACTCAACCGAAGCTCT
GGTCTACCTGCGACAAAACGAAACCCAGACCGAGATTCTCAGTGCCCTCCACCACACGTGTGCAAGTCTTGGTCCTCTAA
GACAGCAGGTATGGCTAAATGGCAATGCCTGCCATGCATAGCATAATTGTAATCTCACTAAACTGACTGGCTTTCATCTT
CTTGCAGTGCATCACGCTGGTTGACTACTACATTCCCGCTTTCTTCTTGGAGGTTTCTGTGGTTAAACCTGAAGAGCTCT
GTGAGTCAGCGCACCTCTGCCCAAAGGGGGCGGCGACTCGGTCGTCCACGCGAGGGGAGGCCTGTGGTCTATGCCATCAT
GTTCTTGTTGAAGTTCTTACCATGCTTAAGGATCCCAACACCAAGGTAACTGCCATCTTCTCGATCGCCGTCATCGATCT
TTTGTGCAATGGTTGGCTTCTACTTTGCACATGGCTAATGTGTTTTTGTGGGTGTCGCGGTTTTTTGCAGCTGGAGATAG
TCGGGCTTCTTTTCAAAACATGCAGCAAGGCAAAGAACTATGAACCGCAGGTGAGTTAAGTTCAGAAACAGTCGTAGATA
CCGGAACACAGACGAATCTGCCTGTAATTAAACGATAGCATATCACAGGATCACCTAGTTCTCATGGTCTTTCATACAAC
AGAAATAACTGAGAAGCGCTGACCTGTTCTAATGCTTCTGAAAGTTAGCGGTTCAATACTA--GTGCTTTTCTCTAGCAT
GCCAGTTCCAGTGATA-----TATATACCAGTTCAGGATCATTAGAACTTTAGATGTTGC--------------------
---------TAACTATTTCTGTAATTGGCTAACTTTGTGACAACTGAATGTAACACATAAACCTTTTGATGTTTTTGACG
CTTTGCAAG-TATCTAGTTTCTTGTTAAAAAAAGGCTATCTAGTTTTGTTCTGCTCACGAGTCTGCTTTTGTTTTTATT-
TCTCAGTGCAAGAGGCTTGTCCTTGACTACATCCCACTGATTCTGGTGAAGACCCAGAACTTCCTTGAGACGACGGATGT
CTGCTTTGCGACACATGCCTGTAAAACAGGCATGCAAGCAACCATTCCTCTATCCGCCGCTTTGTGAAGAACAAATGTGT
AGGAATCATACGC-GGCAAAGAAGCCTGTAAATGTTCTTCCTATGTTTAGCTCAAGCACTACCAAGCTATGAAACTTCGG
GTCGTGTGATGCTTTGTCTGTACAATTTGAGCTCTGCCCTCTGAAGTTTATGCAGCAAGCCTGCAGCTGTACTATCATAA
ATTTGCTCAGCGCACAATCGTCTCAGAG-------------AATTGTGAAAGTTAACATCACATTGTATCTACTG-CTAT
GTATCCAATCATGATGGTATTATTATTCAGTGTTCATATCTTGCTTTGGCATTAGCAAGTGAAGCCATTTTTATGGGGAA
GGTAAGCCTGAATTTTGATATGAAAAGATTGATGAGACTGGATTGCTAACATACTTCTTGGTACCAGAAATACACATTTC
AATTCACATTAAATTCTCCATAGTTAGAAGTGAACTGAAGAAACTACAAGTGCTAGATTTAGTAGT-CATTCAAGGGTAG
AATAGCACCAGATGACCTTAATTCTCCA-------GAGTAACTA-CGAATGCTAGATTTAGTTGTCCATTCAAAGCCAGA
CAGAATATAGTTACCAGAGCACATTTCACAAAAACAGAGGCTTAACTTGATAATTGAGTTGTCAAATGACACCCACAGGA
AGGATCACAAACAACGGTGCAGATCCAAGTCTTTGATGATTTAGACCCTAGTAGAAGGAAATATACACATCACAGCAGGC
CATTACTACAA--CTAGAGTTTCACACATCCATGTGCTGATGACA--CGTCTTCTCATTGCATCCTCTCCTTTCTAAGCC
TCTCAAGCTCCTTCACCATCTGCCAGTGCTCCAGGGAAAGGCTCTTCTCACCAAAGCTTGAGGCTGTAATCTGAGCCATT
GTCAGCCATCTGCACATCAGCACAAAGAAAGTTAGCGGGATGGAGGTTCATAAACTTCAATGTTATCGCAAACACAACAT
GTTAGACGCCCAAGATTACCTGCTAAGTTCAGTGCAACCC
>chr3D_114
--------------------------------------------------------------------------------
----------------------------------TGAAGTAT-AAAGAAATCGAGGGATTTACACTGAATA----TCTTT
TTTGATATTAAAGCGTATAATACCATTAAATTTTAATAAAATATTATTTAAAATAGGCTGCAATTGCTATATTTGCATTA
ATATTC----TTTAGGATAAGATTTTCTTTTACTAATAGTTATGTCATAAAAATAATAAATAGATAATCCGAATGTATTT
CAAAATTTATGTAATCTCACTTCGTATACAAAGTTCAAAAAAATAAAGCATGACGGATGATTAATAGACCGTGGGTGCAT
TTGCACGGGCCACTTTGCTAGCTGGA-TAAAAACTCACGAAAAAGGGCAAGCTACTACGCCTAC-------AACAAACCA
CACAATTCAGTTCTTTTACAGTTACTACCTTGTAAGA-----AAAGAAAAGGTTGTCTTCTTCTTCGCCGCTTCCATCCA
TCCATCCATCCTCAGGAGTCAGGACA-GGGCTTCAGCTAACCTCGTGGAGCTTTTACTCCCCGAGCTGCCCTCCCCCGTT
CCAAGAGCAAATCAGACGCAGAGGGGAGCGGCCGCAGAGCGAGTCAACCAGGTGAGCTACTCCGCGATTCCCCTGAGAGA
ATATTT-ACTACTAGCTGATTTGCTCCGCCCTTCCCGGTTGGGTTGGA-CCCCCATGTTCATCCTGCATCTACCGAGCGA
GGCTCGATTCGAGTAGCATCCACTGCACGTTTTTGGATCTCGTCGGGCCTTGTTCTGGCGTGGGGACGGAAGCTTGTTCT
GGCGGTGCCACAGGAACAAGTCTTGCTGAATCTGGTGCTCAAAACGTGTGTGCGCAGATATGCATGTGTTGACTTTTTAG
GAATTGGGGTTAGCTG--------TTGCGTGCATTCTAGCCTTCAGA-----------------------TGTTGGGACA
TCTCCCTGTTTTCTGTTCTGAGTCTCCAAATTAACTGTGCTCTGGCAAACTTGTGAGCAGGCATGGCGATGGCGAGCTCG
ACG---------AGGAGGCTGGCGTTTGTGCTGCTCGGGCTGGCCTTTTCGGCCGCGCTCGCAGAGAGCAGAGATGCATA
TATGAGGAGCGCAGATCGATATGCCTGCATACTGAGTAAGTTGTGGATTTATTACAAGATTGAATGCTCGTACTGGTTGT
TCTTGTTTGTTATCCAAGAGTTTCTGTTCATGTCTCAGTGGCATCCATGCTGATAATGCTAGGTAGATCGACCGAGTGCA
GTAGTTGTGTGCCACCAATCCACTTTTCTGGAAAATACTTGCTCGAAAACCATCTGAAAC-------------------A
----------TATGTATGAAGAACAGCTACTTAATT-TTGACCAAAATACTAATGGAGTACTATCTCTCAATTTGGTTTT
GTGCTGATTCCAGAAATAATTCTGCGTCTATTTTTCTGTTTCATCTGGGTTGCACAGACACATACAAGTATGAATTGTGT
TGTTGATGCCTGTGTTGTACAAACTATGAATTGTGTACCCACTGCTTATTACTTGATATCTTTAGC-TAGTAGTAGTCAC
AATTAGGGCATGTTATTCTGCTTCCAGTTCACTGATTCTGAAAGTCTGATTTCTCACTTATGGTTTCTCATG-----AAG
AAAACTCAGATCCAGATGTGATAAATTATGCTCACCACATCTCCAGCTGAACACCCCTTTCCTTGCAAAAATTAAAGTTC
CA-CTATTTCCTAGTGTTCACCTTATGATAAGAACTGCAACTGAATTTTTTTACCAGAAGACTGTCCTTTTATTTTTGAC
CAGAAGACTGTCCCTAAATAATCCTGCATCTACT-------------------------------------TACCAGAA-
-----------ATAATTCTGCGTCTATTTTTCTGTTTCATCTGAGTTGCACACACACATACAAGTATGAATTGTGTTGTT
GATGCCTGTGTTGTACAAACTATGAATTGTGTACCCACTGCTTATTAGATATCTGTAGTTAGCAGTAGTCACAATTAAGA
CATGTTATTCTGCTTCCATTCAGTGATTCTAAAAGTCTGAATTCTCACTTATGGTTTCTCAAGAAGAAAACTCAGATCCA
GATGTGATAAGTTATGCTCACCACATCTTCAGCTAAACGACCTTCTCCTCGCAAAAATTAAAGTTCCACTGTTTTTGAGT
GTTCACCTTATGATAGGAACTGCTACTTAATTTTTGACCAGAACACTGTCCATAAATAATCGTGCATCTAG---------
--------------------------------------------------------------------------------
-----------TTTTCTGCTTTGATCTATGTTGCAAAGACACATGAATCACGTTT--------CTGATGCCTGTATTGTA
AGAAACTAAGAATTGCTTTACTTGCTGAGTTGCTGTCTATTACATATATTTAGCTGGAAGTAGTCACAATTAGGGCATGT
AAACTCTGCTTCCATTCACTGATTCTGCCAGTCTGAACTTTCGCTTATAGCTACTC--------ATAAAGATAACTGTGA
TCCTGCTGTGACAAATTATGCTCACCACATCTTCAGCTAAACATCCCTCTCCTTGTAAAAATTCAAGTTCCAC--TGTTG
AGTGCTGACCTTATGACTTTTTTTTTTTGACTGGTCTGACCTTATGACTTGTGATCATTTCAGCCCAGGAGAGCTTCCCT
GTTGCAAGCAAAGGGTCAGGATTAACTTCGGCAAACGGAAAGCTGTGTGTACTATGTGAGCAATACTCAACCGAAGCTCT
GATCTACCTGCGACAAAACGAAACACAGGCCGAGATTCTCAGTGCCCTCCACCACACGTGTGCAAGCCTTGGTCCTCTAA
GACAGCAGGTGTGGTTAAATGACAATGCCTGCCTAGGATAGCACAGTTCAGAGTTCAGTAAACTGACTGGCTTTCATCTT
CTCGCAGTGCATCACGCTGGTCGACTACTACATTCCCGTGTTCTTCTTGGAGGTTTCTGTAGTTAAACCTGAGGAGTTAT
GTGAATCAGCGCACCTCTGCCCAAAGGGGGCGGCGACTCGGTCGTCCACACGAGGGGATGCCTGTGGTCTATGCCATCAT
GTTCTTGTTGAAGTTCTTATGATGCTTAAGGATCCCAACACCAAGGTAACTGTCATGTTGCCAATCACAGTTACCGATCT
TCTGTGCAATGGTTGGCTTGTACTTTGCACATGGCTAATGCTTTCTTGTGCGTGTCACGATTTTTTGCAGCTGGAGATAG
TCGGGCTTCTTTTCAAAACATGCAGCAAGGCGAAGAACTACGAACCGCAGGTGAGTTAAGTTCAGAAACAGTCGTAGATA
CCGGAGGACAGATGAATCTGCCTGTAGTTAAATGAGAAAATATCACAGGATCAACTAGTTTTCGTGGTCGTTTGTGCAAC
AGAAATAATCAAGACACCCTGAACTCTCCTAATTCTTCTGGAAGTAAACAGTTCAATGCCACAGTTCTTTACGGA-----
-------------------------------TTCAGGCTCTTTAGAACTTTAGATGTTCGTGATCACTTGATATGCTTCA
AAACCTAGATAACTATTTCTGTAAAC--------------CAACTGAATGGTACACATAAACCTTCTGACGATTTTGACG
CTTTGCAATGTATCTAA----------------------CTAGTTTTGTTCTGCTCGT--GTCTGCTTTTGTTTTTATTT
TCTCAGTGCAAGAGGCTTGTCCTTGACTACATCCCACTGATTCTGGTGAAGACCCAGGAGTTCCTTGAGACGACGGACGT
CTGCTTTGCGACACATGCCTGTAAAACAGGCATGCAAGCAACCATTCCTCTCTCCGCCGCTTTGTGAAGAACAAATATGT
AGGGATCATACAGGGGCAAAGAAGCCTGTAAATGTTCCTCCTGTATTTTGCTCAAGCACTGCCAAGCTATGAAACTT--G
GTTGTGCGAGGGTTTGTCTGTACAATTTGAGCTCTGCTCTCTGAAGTTTATGCAGCAAGCCAGCAGCTGTACTATCATTC
ATTTGCTCAGCACATAATCTTCTCGGAGCAGCATACTGAGCAATTGTGA-AAGTTACATCACATTGTATCTACTGGCTAT
ATATCCAGTCATGATGGTACTATTATTCAGTGTTCATGTCTTGCTTTGGCATTAGCAAGTGAAGCAATTTTTATTGGGAA
GGTAATCCTG----------------GATTGATGAGATTGGGTTGTTAACATACTT---GGTACCAGAAATACACATTTC
AATTCACATTAAATTCTCCAGAGTTAGCAGTGAACTGAAGAAACTGAAAGTGTTAGATTTAGTAATCCATTCAAGGGCAG
AATAGCACCAGATGCCCTTAATTCTCCAGAGTTGGGAGTAACTA-CGAACGTTAGATTTAGTTGTCCATTCAAGGCCAGA
CAGAATGTAGCTACCAGAGCACATTTCACAAAAACACAGGCTTAACTTGATAATAGAGTTGTCAAATGACACCCACAGGA
AGGATCACAAACAATGATGCAGATCCAAGTCTT-GAAGATTTAGACCCTAGTAGGAGGCAATATACACATCACAGCAGGC
CATTACTACAAAGCTAGAGTTTCACACATCCATGTGCTGATGAGACGCGTCTTCTCATTGCATCCTCTCCTTTCTAAGCC
TCTCAAGCTCCTTCGCCATCTGCCAGTGCTCCAGGGAAAGGCTCTTCTCACCAAAGCTTGAGGCTGTAATCTGAGCCATT
GTCAGCCATCTGCACATCAGCGCAAAAAATGTTAGCCGGATGGAGGTTCATAAACTCCCATGTTATCGCAAACGCAACAT
GTTAGACGCCCAAGATTACCTGCTAAGTTCAGTGCAACCC
>SNPs
S-----------------------S-----S-S-S---------------------S-S---------------------
-----S-------S-S-------------------------S-------------S------------------------
--S-----------------S-----------------------------------------------------------
----S-------S------------------------------------------S------S-----SS----------
--------------------------------------------SS--------------------S------------S
--SSSSS--SSSSSSSSS-SSSS-SSSSSS--------------------------------------------------
-------------------------------S-SSS-S------------------------------------------
-------------S------------------------------------------------------------------
---------------S----------------------------------------------------------------
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S-----------------------------------------------------------------------S-------
-----------------S----------------------------------------------------------S---
--------------SSSSSSSSSS--S--------------------SSSSSSSSSSSSSSSSSSSSSSS----------
---------------S----S---S-------------S-----------------------------S-----------
---SSSSSSSSS--------------------------------------------------------------------
----------------------------------------S------------S--------------------------
---------S------S--------------------S--------------------S-------S--------S----
------------------------------------------------------------S------SS------SSS--
SSSSSSSSSS----------------------------------------------------------------------
-------------------------------------SS-----------------------------------------
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-----S----------------------------------------S----------------------S-S---S----
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--S----------------S--------------------------------------S---------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
S--S-------------------------SS-S-SSSSS-S-S-S--S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S-------------S---S--------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------S-------------S---------------------
--------------------------------------------------------------------------------
--------------------S--S--------------------------------------------------------
----------------------S----------------------------------------------------S----
--------S----------S--S----------S--------------------------------------S-------
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---------------------------------------------------S----------------------------
---------------------------------------------------------------S-------------S--
------------------------S-------------------------------------------------------
-----------S-------------------------------------S------------------------S-SS-S
S----S------S---SSSSS-----------------------------------------------------------
------------------S-------------------S---------------S-------------S-----------
---------------------------------S-S------------------------S---------S-------S-
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--------------------------------------------------------------------------------
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------------------------------------------------------S-------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------S-----------------
-------------------------------------------------------------S------------------
-----------S--------------------------------S-----------------------------------
-------------------S----------------------------------------------------S-------
-----------------------------------------------------------------------------S--
--------------------------------------S-------S----------------------------S----
-------------------------------------------------------------------S------------
-----------------------------------S--------------------S-----------------------
----------------------------------------
>forward_418
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
TTCACACGGGTCACACAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>reverse_1347
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTCGACCGAATGCA
GCAGTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>forward_420
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTCACACGGGTCACACAGTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>reverse_1558
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACTTCATCTGGGTTGCACAGA----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>forward_423
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ACACGGGTCACACAGTTCAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1843
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--CCTGTTTTTGAGTGTTCGCCT---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------
>forward_425
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----ACGGGTCACACAGTTCAGTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2796
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGTTG
AGTGCTGAGCTTATGAG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------
>forward_1065
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTGTTTTGTGCTCTGGGTCC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3030
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------GGGTCCTCTAA
GACAGCAGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2988
--------------------------------------------------------------------------------
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--------TGCGACAAAACGAAACCCAA----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3999
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
CTGCTTTGCGACACATGC--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_3208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------CCTGAAGAGCTCT
GTGAGTCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------
>reverse_4948
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TATCTGAGCCATT
GTCAGCCA------------------------------------------------------------------------
----------------------------------------
