Multiple sequence alignment - TraesCS3A01G093900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G093900 chr3A 100.000 2216 0 0 1 2216 60199439 60201654 0.000000e+00 4093
1 TraesCS3A01G093900 chr3A 91.667 96 7 1 313 407 420742793 420742698 4.960000e-27 132
2 TraesCS3A01G093900 chr3A 91.667 96 6 2 314 407 586413485 586413580 4.960000e-27 132
3 TraesCS3A01G093900 chrUn 89.004 1155 72 31 402 1514 39462095 39460954 0.000000e+00 1378
4 TraesCS3A01G093900 chrUn 81.875 320 43 11 1904 2216 39460450 39460139 2.820000e-64 255
5 TraesCS3A01G093900 chrUn 91.346 104 9 0 1814 1917 39460961 39460858 2.290000e-30 143
6 TraesCS3A01G093900 chr3B 89.004 1155 72 31 402 1514 75316795 75317936 0.000000e+00 1378
7 TraesCS3A01G093900 chr3B 81.935 310 42 11 1904 2208 75318440 75318740 1.310000e-62 250
8 TraesCS3A01G093900 chr3B 91.346 104 9 0 1814 1917 75317929 75318032 2.290000e-30 143
9 TraesCS3A01G093900 chr3D 90.741 702 40 17 917 1612 47779463 47780145 0.000000e+00 913
10 TraesCS3A01G093900 chr3D 91.509 530 27 14 403 923 47778789 47779309 0.000000e+00 713
11 TraesCS3A01G093900 chr3D 82.126 414 53 13 1814 2212 47780353 47780760 3.530000e-88 335
12 TraesCS3A01G093900 chr3D 91.549 142 11 1 1656 1796 47780222 47780363 6.240000e-46 195
13 TraesCS3A01G093900 chr3D 87.857 140 15 2 1375 1514 47780223 47780360 1.760000e-36 163
14 TraesCS3A01G093900 chr2A 93.220 118 8 0 22 139 374795691 374795808 8.130000e-40 174
15 TraesCS3A01G093900 chr7D 93.162 117 8 0 22 138 509596554 509596438 2.930000e-39 172
16 TraesCS3A01G093900 chr7D 91.579 95 7 1 316 409 151024125 151024031 1.790000e-26 130
17 TraesCS3A01G093900 chr5D 92.500 120 9 0 22 141 388628060 388627941 2.930000e-39 172
18 TraesCS3A01G093900 chr5D 90.678 118 10 1 22 139 388736891 388736775 2.950000e-34 156
19 TraesCS3A01G093900 chr2B 93.220 118 7 1 22 139 627834914 627834798 2.930000e-39 172
20 TraesCS3A01G093900 chr2D 90.698 129 11 1 11 139 299561030 299561157 1.050000e-38 171
21 TraesCS3A01G093900 chr2D 93.878 49 3 0 828 876 30741733 30741781 8.490000e-10 75
22 TraesCS3A01G093900 chr6B 91.667 120 9 1 22 140 377806757 377806638 4.900000e-37 165
23 TraesCS3A01G093900 chr6B 94.000 50 2 1 138 186 57431000 57431049 8.490000e-10 75
24 TraesCS3A01G093900 chr4A 91.597 119 10 0 22 140 102966619 102966501 4.900000e-37 165
25 TraesCS3A01G093900 chr4A 91.667 96 7 1 316 410 594031532 594031437 4.960000e-27 132
26 TraesCS3A01G093900 chr4A 89.796 98 9 1 313 409 113862441 113862538 8.310000e-25 124
27 TraesCS3A01G093900 chr1B 91.525 118 7 3 22 137 53238766 53238650 2.280000e-35 159
28 TraesCS3A01G093900 chr5A 91.753 97 7 1 313 408 27736894 27736990 1.380000e-27 134
29 TraesCS3A01G093900 chr7A 89.216 102 10 1 313 413 473023812 473023711 2.310000e-25 126
30 TraesCS3A01G093900 chr7A 87.156 109 12 2 313 420 632540741 632540634 2.990000e-24 122
31 TraesCS3A01G093900 chr6A 87.963 108 12 1 313 419 20748412 20748519 2.310000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G093900 chr3A 60199439 60201654 2215 False 4093.000000 4093 100.000000 1 2216 1 chr3A.!!$F1 2215
1 TraesCS3A01G093900 chrUn 39460139 39462095 1956 True 592.000000 1378 87.408333 402 2216 3 chrUn.!!$R1 1814
2 TraesCS3A01G093900 chr3B 75316795 75318740 1945 False 590.333333 1378 87.428333 402 2208 3 chr3B.!!$F1 1806
3 TraesCS3A01G093900 chr3D 47778789 47780760 1971 False 463.800000 913 88.756400 403 2212 5 chr3D.!!$F1 1809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.032416 ACATAGGGTAGCCACGTCCT 60.032 55.0 14.62 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2873 0.03582 TTGGTGACCCGGTAATCAGC 60.036 55.0 18.07 18.07 42.41 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.763172 CGAGGCTGATACCATATAAAAGATC 57.237 40.000 0.00 0.00 0.00 2.75
25 26 6.473778 CGAGGCTGATACCATATAAAAGATCG 59.526 42.308 0.00 0.00 0.00 3.69
26 27 6.644347 AGGCTGATACCATATAAAAGATCGG 58.356 40.000 0.00 0.00 0.00 4.18
27 28 5.817816 GGCTGATACCATATAAAAGATCGGG 59.182 44.000 0.00 0.00 0.00 5.14
28 29 6.407202 GCTGATACCATATAAAAGATCGGGT 58.593 40.000 0.00 0.00 0.00 5.28
29 30 6.313905 GCTGATACCATATAAAAGATCGGGTG 59.686 42.308 0.00 0.00 0.00 4.61
30 31 6.170506 TGATACCATATAAAAGATCGGGTGC 58.829 40.000 0.00 0.00 0.00 5.01
31 32 4.431416 ACCATATAAAAGATCGGGTGCA 57.569 40.909 0.00 0.00 0.00 4.57
32 33 4.985538 ACCATATAAAAGATCGGGTGCAT 58.014 39.130 0.00 0.00 0.00 3.96
33 34 6.121776 ACCATATAAAAGATCGGGTGCATA 57.878 37.500 0.00 0.00 0.00 3.14
34 35 6.721318 ACCATATAAAAGATCGGGTGCATAT 58.279 36.000 0.00 0.00 0.00 1.78
35 36 6.599244 ACCATATAAAAGATCGGGTGCATATG 59.401 38.462 0.00 0.00 0.00 1.78
36 37 6.458751 CCATATAAAAGATCGGGTGCATATGC 60.459 42.308 21.09 21.09 42.50 3.14
59 60 8.812513 TGCACGTATATATAAGTACATAGGGT 57.187 34.615 10.46 0.00 0.00 4.34
60 61 9.904198 TGCACGTATATATAAGTACATAGGGTA 57.096 33.333 10.46 0.00 0.00 3.69
63 64 9.566432 ACGTATATATAAGTACATAGGGTAGCC 57.434 37.037 9.27 1.60 31.13 3.93
64 65 9.565090 CGTATATATAAGTACATAGGGTAGCCA 57.435 37.037 14.62 0.00 31.13 4.75
66 67 6.770746 ATATAAGTACATAGGGTAGCCACG 57.229 41.667 14.62 3.17 31.13 4.94
67 68 2.449137 AGTACATAGGGTAGCCACGT 57.551 50.000 14.62 9.28 31.13 4.49
68 69 2.305009 AGTACATAGGGTAGCCACGTC 58.695 52.381 14.62 0.00 31.13 4.34
69 70 1.339291 GTACATAGGGTAGCCACGTCC 59.661 57.143 14.62 0.00 31.13 4.79
70 71 0.032416 ACATAGGGTAGCCACGTCCT 60.032 55.000 14.62 0.00 0.00 3.85
71 72 0.674534 CATAGGGTAGCCACGTCCTC 59.325 60.000 14.62 0.00 0.00 3.71
72 73 0.260816 ATAGGGTAGCCACGTCCTCA 59.739 55.000 14.62 0.00 0.00 3.86
73 74 0.040058 TAGGGTAGCCACGTCCTCAA 59.960 55.000 14.62 0.00 0.00 3.02
74 75 1.079336 GGGTAGCCACGTCCTCAAC 60.079 63.158 5.96 0.00 0.00 3.18
75 76 1.542187 GGGTAGCCACGTCCTCAACT 61.542 60.000 5.96 0.00 0.00 3.16
76 77 1.180029 GGTAGCCACGTCCTCAACTA 58.820 55.000 0.00 0.00 0.00 2.24
77 78 1.755380 GGTAGCCACGTCCTCAACTAT 59.245 52.381 0.00 0.00 0.00 2.12
78 79 2.954318 GGTAGCCACGTCCTCAACTATA 59.046 50.000 0.00 0.00 0.00 1.31
79 80 3.243334 GGTAGCCACGTCCTCAACTATAC 60.243 52.174 0.00 0.00 0.00 1.47
80 81 2.453521 AGCCACGTCCTCAACTATACA 58.546 47.619 0.00 0.00 0.00 2.29
81 82 2.829720 AGCCACGTCCTCAACTATACAA 59.170 45.455 0.00 0.00 0.00 2.41
82 83 3.119101 AGCCACGTCCTCAACTATACAAG 60.119 47.826 0.00 0.00 0.00 3.16
83 84 3.782046 CCACGTCCTCAACTATACAAGG 58.218 50.000 0.00 0.00 0.00 3.61
84 85 3.446161 CCACGTCCTCAACTATACAAGGA 59.554 47.826 0.00 0.00 35.56 3.36
85 86 4.081862 CCACGTCCTCAACTATACAAGGAA 60.082 45.833 0.00 0.00 39.55 3.36
86 87 5.103000 CACGTCCTCAACTATACAAGGAAG 58.897 45.833 0.00 0.00 39.55 3.46
87 88 4.159879 ACGTCCTCAACTATACAAGGAAGG 59.840 45.833 7.84 0.00 40.41 3.46
88 89 4.401519 CGTCCTCAACTATACAAGGAAGGA 59.598 45.833 0.00 0.00 39.55 3.36
89 90 5.450688 CGTCCTCAACTATACAAGGAAGGAG 60.451 48.000 0.00 0.00 39.55 3.69
90 91 5.422650 GTCCTCAACTATACAAGGAAGGAGT 59.577 44.000 0.00 0.00 39.55 3.85
91 92 6.606395 GTCCTCAACTATACAAGGAAGGAGTA 59.394 42.308 0.00 0.00 39.55 2.59
92 93 6.834451 TCCTCAACTATACAAGGAAGGAGTAG 59.166 42.308 0.00 0.00 35.01 2.57
93 94 6.461788 CCTCAACTATACAAGGAAGGAGTAGC 60.462 46.154 0.00 0.00 0.00 3.58
94 95 5.067413 TCAACTATACAAGGAAGGAGTAGCG 59.933 44.000 0.00 0.00 0.00 4.26
95 96 2.892784 ATACAAGGAAGGAGTAGCGC 57.107 50.000 0.00 0.00 0.00 5.92
96 97 1.848652 TACAAGGAAGGAGTAGCGCT 58.151 50.000 17.26 17.26 0.00 5.92
97 98 0.977395 ACAAGGAAGGAGTAGCGCTT 59.023 50.000 18.68 0.00 0.00 4.68
98 99 1.338200 ACAAGGAAGGAGTAGCGCTTG 60.338 52.381 18.68 5.97 0.00 4.01
99 100 0.977395 AAGGAAGGAGTAGCGCTTGT 59.023 50.000 18.68 2.07 0.00 3.16
100 101 0.977395 AGGAAGGAGTAGCGCTTGTT 59.023 50.000 18.68 0.31 0.00 2.83
101 102 1.079503 GGAAGGAGTAGCGCTTGTTG 58.920 55.000 18.68 0.00 0.00 3.33
102 103 1.608283 GGAAGGAGTAGCGCTTGTTGT 60.608 52.381 18.68 0.00 0.00 3.32
103 104 2.353406 GGAAGGAGTAGCGCTTGTTGTA 60.353 50.000 18.68 0.00 0.00 2.41
104 105 2.365408 AGGAGTAGCGCTTGTTGTAC 57.635 50.000 18.68 6.40 0.00 2.90
105 106 1.616865 AGGAGTAGCGCTTGTTGTACA 59.383 47.619 18.68 0.00 0.00 2.90
106 107 2.036733 AGGAGTAGCGCTTGTTGTACAA 59.963 45.455 18.68 3.59 36.54 2.41
119 120 4.297510 TGTTGTACAAGAAATGCACATGC 58.702 39.130 8.98 0.00 35.26 4.06
120 121 5.680665 TTGTTGTACAAGAAATGCACATGCA 60.681 36.000 15.21 9.36 43.69 3.96
122 123 7.736543 TTGTTGTACAAGAAATGCACATGCATA 60.737 33.333 19.23 0.00 45.96 3.14
137 138 7.809665 GCACATGCATAATATACATCTCAACA 58.190 34.615 0.00 0.00 41.59 3.33
138 139 7.747799 GCACATGCATAATATACATCTCAACAC 59.252 37.037 0.00 0.00 41.59 3.32
139 140 8.996271 CACATGCATAATATACATCTCAACACT 58.004 33.333 0.00 0.00 0.00 3.55
143 144 9.696917 TGCATAATATACATCTCAACACTACTG 57.303 33.333 0.00 0.00 0.00 2.74
144 145 9.698309 GCATAATATACATCTCAACACTACTGT 57.302 33.333 0.00 0.00 0.00 3.55
152 153 7.896811 ACATCTCAACACTACTGTTCTATTCA 58.103 34.615 0.00 0.00 38.66 2.57
153 154 8.535335 ACATCTCAACACTACTGTTCTATTCAT 58.465 33.333 0.00 0.00 38.66 2.57
154 155 8.815189 CATCTCAACACTACTGTTCTATTCATG 58.185 37.037 0.00 0.00 38.66 3.07
155 156 8.122472 TCTCAACACTACTGTTCTATTCATGA 57.878 34.615 0.00 0.00 38.66 3.07
156 157 8.585018 TCTCAACACTACTGTTCTATTCATGAA 58.415 33.333 11.26 11.26 38.66 2.57
157 158 9.376075 CTCAACACTACTGTTCTATTCATGAAT 57.624 33.333 23.75 23.75 38.66 2.57
158 159 9.725019 TCAACACTACTGTTCTATTCATGAATT 57.275 29.630 25.26 8.81 38.66 2.17
188 189 7.773864 ATGAAATTAATCATGAATTTGCGCA 57.226 28.000 5.66 5.66 38.59 6.09
189 190 7.592439 TGAAATTAATCATGAATTTGCGCAA 57.408 28.000 21.02 21.02 36.78 4.85
190 191 7.677309 TGAAATTAATCATGAATTTGCGCAAG 58.323 30.769 23.68 10.72 36.78 4.01
191 192 7.544915 TGAAATTAATCATGAATTTGCGCAAGA 59.455 29.630 23.68 15.99 36.78 3.02
192 193 8.428186 AAATTAATCATGAATTTGCGCAAGAT 57.572 26.923 23.68 17.54 35.64 2.40
193 194 8.428186 AATTAATCATGAATTTGCGCAAGATT 57.572 26.923 26.16 26.16 36.67 2.40
194 195 5.961395 AATCATGAATTTGCGCAAGATTC 57.039 34.783 30.20 30.20 43.02 2.52
195 196 3.772932 TCATGAATTTGCGCAAGATTCC 58.227 40.909 31.75 22.56 43.02 3.01
196 197 3.193056 TCATGAATTTGCGCAAGATTCCA 59.807 39.130 31.75 25.22 43.02 3.53
197 198 3.657015 TGAATTTGCGCAAGATTCCAA 57.343 38.095 31.75 21.90 43.02 3.53
198 199 4.191033 TGAATTTGCGCAAGATTCCAAT 57.809 36.364 31.75 19.38 43.02 3.16
199 200 5.321959 TGAATTTGCGCAAGATTCCAATA 57.678 34.783 31.75 21.25 43.02 1.90
200 201 5.101628 TGAATTTGCGCAAGATTCCAATAC 58.898 37.500 31.75 19.53 43.02 1.89
201 202 4.717233 ATTTGCGCAAGATTCCAATACA 57.283 36.364 23.68 3.89 43.02 2.29
202 203 3.763097 TTGCGCAAGATTCCAATACAG 57.237 42.857 21.02 0.00 43.02 2.74
203 204 2.710377 TGCGCAAGATTCCAATACAGT 58.290 42.857 8.16 0.00 43.02 3.55
204 205 3.081061 TGCGCAAGATTCCAATACAGTT 58.919 40.909 8.16 0.00 43.02 3.16
205 206 4.257731 TGCGCAAGATTCCAATACAGTTA 58.742 39.130 8.16 0.00 43.02 2.24
206 207 4.881273 TGCGCAAGATTCCAATACAGTTAT 59.119 37.500 8.16 0.00 43.02 1.89
207 208 5.356751 TGCGCAAGATTCCAATACAGTTATT 59.643 36.000 8.16 0.00 43.02 1.40
208 209 6.127758 TGCGCAAGATTCCAATACAGTTATTT 60.128 34.615 8.16 0.00 43.02 1.40
209 210 6.751888 GCGCAAGATTCCAATACAGTTATTTT 59.248 34.615 0.30 0.00 43.02 1.82
210 211 7.913297 GCGCAAGATTCCAATACAGTTATTTTA 59.087 33.333 0.30 0.00 43.02 1.52
211 212 9.950680 CGCAAGATTCCAATACAGTTATTTTAT 57.049 29.630 0.00 0.00 43.02 1.40
260 261 9.933723 ATAGTCCTTTTCATTGAAATTGAAAGG 57.066 29.630 12.39 14.49 33.79 3.11
261 262 8.021898 AGTCCTTTTCATTGAAATTGAAAGGA 57.978 30.769 18.96 18.96 32.63 3.36
262 263 8.146412 AGTCCTTTTCATTGAAATTGAAAGGAG 58.854 33.333 21.63 11.04 33.72 3.69
263 264 8.143835 GTCCTTTTCATTGAAATTGAAAGGAGA 58.856 33.333 21.63 6.83 33.72 3.71
264 265 8.143835 TCCTTTTCATTGAAATTGAAAGGAGAC 58.856 33.333 18.96 0.00 32.63 3.36
265 266 8.146412 CCTTTTCATTGAAATTGAAAGGAGACT 58.854 33.333 16.72 0.00 34.82 3.24
267 268 9.965824 TTTTCATTGAAATTGAAAGGAGACTAC 57.034 29.630 12.39 0.00 33.04 2.73
268 269 8.924511 TTCATTGAAATTGAAAGGAGACTACT 57.075 30.769 0.00 0.00 42.68 2.57
269 270 8.327941 TCATTGAAATTGAAAGGAGACTACTG 57.672 34.615 0.00 0.00 42.68 2.74
270 271 7.391554 TCATTGAAATTGAAAGGAGACTACTGG 59.608 37.037 0.00 0.00 42.68 4.00
271 272 6.187727 TGAAATTGAAAGGAGACTACTGGT 57.812 37.500 0.00 0.00 42.68 4.00
272 273 6.231211 TGAAATTGAAAGGAGACTACTGGTC 58.769 40.000 0.00 0.00 42.68 4.02
279 280 3.066814 GACTACTGGTCGGCCCGT 61.067 66.667 8.56 8.56 36.21 5.28
280 281 3.061260 GACTACTGGTCGGCCCGTC 62.061 68.421 6.33 2.65 34.05 4.79
281 282 3.066190 CTACTGGTCGGCCCGTCA 61.066 66.667 6.33 2.17 34.05 4.35
282 283 2.601067 TACTGGTCGGCCCGTCAA 60.601 61.111 6.33 0.00 34.05 3.18
283 284 2.162338 CTACTGGTCGGCCCGTCAAA 62.162 60.000 6.33 0.00 34.05 2.69
284 285 1.546589 TACTGGTCGGCCCGTCAAAT 61.547 55.000 6.33 0.00 34.05 2.32
285 286 1.674322 CTGGTCGGCCCGTCAAATT 60.674 57.895 2.12 0.00 35.15 1.82
286 287 1.644786 CTGGTCGGCCCGTCAAATTC 61.645 60.000 2.12 0.00 35.15 2.17
287 288 1.376812 GGTCGGCCCGTCAAATTCT 60.377 57.895 1.63 0.00 0.00 2.40
288 289 0.958876 GGTCGGCCCGTCAAATTCTT 60.959 55.000 1.63 0.00 0.00 2.52
289 290 1.676615 GGTCGGCCCGTCAAATTCTTA 60.677 52.381 1.63 0.00 0.00 2.10
290 291 2.078392 GTCGGCCCGTCAAATTCTTAA 58.922 47.619 1.63 0.00 0.00 1.85
291 292 2.485038 GTCGGCCCGTCAAATTCTTAAA 59.515 45.455 1.63 0.00 0.00 1.52
292 293 2.485038 TCGGCCCGTCAAATTCTTAAAC 59.515 45.455 1.63 0.00 0.00 2.01
293 294 2.486592 CGGCCCGTCAAATTCTTAAACT 59.513 45.455 0.00 0.00 0.00 2.66
294 295 3.685756 CGGCCCGTCAAATTCTTAAACTA 59.314 43.478 0.00 0.00 0.00 2.24
295 296 4.436451 CGGCCCGTCAAATTCTTAAACTAC 60.436 45.833 0.00 0.00 0.00 2.73
296 297 4.698780 GGCCCGTCAAATTCTTAAACTACT 59.301 41.667 0.00 0.00 0.00 2.57
297 298 5.163784 GGCCCGTCAAATTCTTAAACTACTC 60.164 44.000 0.00 0.00 0.00 2.59
298 299 5.163784 GCCCGTCAAATTCTTAAACTACTCC 60.164 44.000 0.00 0.00 0.00 3.85
299 300 5.353400 CCCGTCAAATTCTTAAACTACTCCC 59.647 44.000 0.00 0.00 0.00 4.30
300 301 6.171213 CCGTCAAATTCTTAAACTACTCCCT 58.829 40.000 0.00 0.00 0.00 4.20
301 302 6.313164 CCGTCAAATTCTTAAACTACTCCCTC 59.687 42.308 0.00 0.00 0.00 4.30
302 303 6.313164 CGTCAAATTCTTAAACTACTCCCTCC 59.687 42.308 0.00 0.00 0.00 4.30
303 304 6.313164 GTCAAATTCTTAAACTACTCCCTCCG 59.687 42.308 0.00 0.00 0.00 4.63
304 305 6.013984 TCAAATTCTTAAACTACTCCCTCCGT 60.014 38.462 0.00 0.00 0.00 4.69
305 306 6.370186 AATTCTTAAACTACTCCCTCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
306 307 5.813513 TTCTTAAACTACTCCCTCCGTTT 57.186 39.130 0.00 0.00 34.37 3.60
307 308 5.397142 TCTTAAACTACTCCCTCCGTTTC 57.603 43.478 0.00 0.00 32.46 2.78
308 309 2.738013 AAACTACTCCCTCCGTTTCG 57.262 50.000 0.00 0.00 0.00 3.46
309 310 1.915141 AACTACTCCCTCCGTTTCGA 58.085 50.000 0.00 0.00 0.00 3.71
310 311 2.140839 ACTACTCCCTCCGTTTCGAT 57.859 50.000 0.00 0.00 0.00 3.59
311 312 2.454538 ACTACTCCCTCCGTTTCGATT 58.545 47.619 0.00 0.00 0.00 3.34
312 313 2.830321 ACTACTCCCTCCGTTTCGATTT 59.170 45.455 0.00 0.00 0.00 2.17
313 314 2.853235 ACTCCCTCCGTTTCGATTTT 57.147 45.000 0.00 0.00 0.00 1.82
314 315 3.136009 ACTCCCTCCGTTTCGATTTTT 57.864 42.857 0.00 0.00 0.00 1.94
315 316 3.072211 ACTCCCTCCGTTTCGATTTTTC 58.928 45.455 0.00 0.00 0.00 2.29
316 317 2.070783 TCCCTCCGTTTCGATTTTTCG 58.929 47.619 0.00 0.00 0.00 3.46
317 318 2.070783 CCCTCCGTTTCGATTTTTCGA 58.929 47.619 0.00 0.00 40.66 3.71
330 331 7.179927 TCGATTTTTCGAATTACTTGTCACA 57.820 32.000 0.00 0.00 39.34 3.58
331 332 7.287950 TCGATTTTTCGAATTACTTGTCACAG 58.712 34.615 0.00 0.00 39.34 3.66
332 333 6.519761 CGATTTTTCGAATTACTTGTCACAGG 59.480 38.462 0.00 0.00 34.64 4.00
333 334 6.687081 TTTTTCGAATTACTTGTCACAGGT 57.313 33.333 0.00 0.00 0.00 4.00
334 335 7.789273 TTTTTCGAATTACTTGTCACAGGTA 57.211 32.000 0.00 0.00 0.00 3.08
335 336 7.972832 TTTTCGAATTACTTGTCACAGGTAT 57.027 32.000 0.00 0.00 0.00 2.73
336 337 9.491675 TTTTTCGAATTACTTGTCACAGGTATA 57.508 29.630 0.00 0.00 0.00 1.47
337 338 8.697846 TTTCGAATTACTTGTCACAGGTATAG 57.302 34.615 0.00 0.00 0.00 1.31
338 339 7.634671 TCGAATTACTTGTCACAGGTATAGA 57.365 36.000 0.00 0.00 0.00 1.98
339 340 8.234136 TCGAATTACTTGTCACAGGTATAGAT 57.766 34.615 0.00 0.00 0.00 1.98
340 341 9.346005 TCGAATTACTTGTCACAGGTATAGATA 57.654 33.333 0.00 0.00 0.00 1.98
425 426 6.016108 GGGAGTACATCTTAAGCGAAGTCTAT 60.016 42.308 0.00 0.00 36.45 1.98
427 428 8.016801 GGAGTACATCTTAAGCGAAGTCTATAC 58.983 40.741 0.00 2.40 36.45 1.47
487 488 7.561722 TGAGAGTAAATAAGCTAGTCATGTCCT 59.438 37.037 0.00 0.00 0.00 3.85
657 660 4.262036 GCAGTACCATCTCGTTATCCATCA 60.262 45.833 0.00 0.00 0.00 3.07
659 662 3.371102 ACCATCTCGTTATCCATCACG 57.629 47.619 0.00 0.00 37.77 4.35
675 678 3.394674 TCACGTGGAATTCAGCACTAA 57.605 42.857 17.00 0.00 0.00 2.24
875 892 3.923461 GGAATTCGATCAGGATCATCGTC 59.077 47.826 12.13 4.80 43.07 4.20
876 893 2.688364 TTCGATCAGGATCATCGTCG 57.312 50.000 12.13 8.66 43.07 5.12
890 907 0.390735 TCGTCGTCCATCAGTCGAGA 60.391 55.000 0.00 0.00 34.33 4.04
894 917 1.004595 CGTCCATCAGTCGAGACGTA 58.995 55.000 12.81 0.00 45.25 3.57
939 1122 3.144657 ACTCACCATGCATGTCTCAAA 57.855 42.857 24.58 3.97 0.00 2.69
943 1126 5.011329 ACTCACCATGCATGTCTCAAATTTT 59.989 36.000 24.58 0.00 0.00 1.82
970 1157 7.859875 GTGAATCTTTAGCTGGCTATTTTGATC 59.140 37.037 0.00 0.00 0.00 2.92
976 1163 5.620738 AGCTGGCTATTTTGATCTCTACA 57.379 39.130 0.00 0.00 0.00 2.74
977 1164 5.994250 AGCTGGCTATTTTGATCTCTACAA 58.006 37.500 0.00 0.00 0.00 2.41
978 1165 6.599445 AGCTGGCTATTTTGATCTCTACAAT 58.401 36.000 0.00 0.00 0.00 2.71
980 1167 6.709846 GCTGGCTATTTTGATCTCTACAATCT 59.290 38.462 0.00 0.00 0.00 2.40
1104 1296 0.982852 TCATGAAGGACAGGCCGGAT 60.983 55.000 10.86 0.00 43.43 4.18
1220 1412 1.322538 CCCCGCATTGGCTAGCTTTT 61.323 55.000 15.72 0.00 38.10 2.27
1221 1413 0.179129 CCCGCATTGGCTAGCTTTTG 60.179 55.000 15.72 10.42 38.10 2.44
1229 1421 1.545582 TGGCTAGCTTTTGTTGATGCC 59.454 47.619 15.72 0.00 39.53 4.40
1249 1441 1.950909 CCCACCGTTTTATGTGTGTGT 59.049 47.619 0.00 0.00 0.00 3.72
1252 1444 3.547214 CCACCGTTTTATGTGTGTGTGTC 60.547 47.826 0.00 0.00 0.00 3.67
1256 1448 4.508492 CCGTTTTATGTGTGTGTGTCTGTA 59.492 41.667 0.00 0.00 0.00 2.74
1265 1461 5.465056 TGTGTGTGTGTCTGTATGTGTTATG 59.535 40.000 0.00 0.00 0.00 1.90
1335 1537 0.238817 CCTAGCTATGTCGGTCGCTC 59.761 60.000 0.00 0.00 34.14 5.03
1348 1550 4.860907 GTCGGTCGCTCTGTAAGAATTAAA 59.139 41.667 0.00 0.00 46.34 1.52
1350 1552 6.035758 GTCGGTCGCTCTGTAAGAATTAAAAT 59.964 38.462 0.00 0.00 46.34 1.82
1351 1553 7.221452 GTCGGTCGCTCTGTAAGAATTAAAATA 59.779 37.037 0.00 0.00 46.34 1.40
1352 1554 7.760794 TCGGTCGCTCTGTAAGAATTAAAATAA 59.239 33.333 0.00 0.00 46.34 1.40
1353 1555 8.548721 CGGTCGCTCTGTAAGAATTAAAATAAT 58.451 33.333 0.00 0.00 46.34 1.28
1354 1556 9.865484 GGTCGCTCTGTAAGAATTAAAATAATC 57.135 33.333 0.00 0.00 46.34 1.75
1437 1950 9.458727 TCTTGATCTTTATTTCATTTCTCTGCT 57.541 29.630 0.00 0.00 0.00 4.24
1438 1951 9.504710 CTTGATCTTTATTTCATTTCTCTGCTG 57.495 33.333 0.00 0.00 0.00 4.41
1439 1952 8.797350 TGATCTTTATTTCATTTCTCTGCTGA 57.203 30.769 0.00 0.00 0.00 4.26
1440 1953 9.234827 TGATCTTTATTTCATTTCTCTGCTGAA 57.765 29.630 0.00 0.00 0.00 3.02
1442 1955 9.852091 ATCTTTATTTCATTTCTCTGCTGAAAC 57.148 29.630 0.00 0.00 40.54 2.78
1443 1956 8.299570 TCTTTATTTCATTTCTCTGCTGAAACC 58.700 33.333 0.00 0.00 40.54 3.27
1444 1957 7.523293 TTATTTCATTTCTCTGCTGAAACCA 57.477 32.000 0.00 0.00 40.54 3.67
1445 1958 6.600882 ATTTCATTTCTCTGCTGAAACCAT 57.399 33.333 0.00 0.00 40.54 3.55
1446 1959 6.409524 TTTCATTTCTCTGCTGAAACCATT 57.590 33.333 0.00 0.00 38.54 3.16
1447 1960 6.409524 TTCATTTCTCTGCTGAAACCATTT 57.590 33.333 0.00 0.00 38.54 2.32
1448 1961 6.017400 TCATTTCTCTGCTGAAACCATTTC 57.983 37.500 0.00 0.00 38.54 2.17
1449 1962 5.535783 TCATTTCTCTGCTGAAACCATTTCA 59.464 36.000 4.08 4.08 46.68 2.69
1473 1986 9.822185 TCAATAAGAAGAATCTCAAATGATCGA 57.178 29.630 0.00 0.00 33.77 3.59
1476 1989 7.912056 AAGAAGAATCTCAAATGATCGAACA 57.088 32.000 0.00 0.00 33.77 3.18
1477 1990 8.503458 AAGAAGAATCTCAAATGATCGAACAT 57.497 30.769 1.78 1.78 33.77 2.71
1478 1991 7.917597 AGAAGAATCTCAAATGATCGAACATG 58.082 34.615 9.11 0.00 0.00 3.21
1479 1992 7.551974 AGAAGAATCTCAAATGATCGAACATGT 59.448 33.333 9.11 0.00 0.00 3.21
1480 1993 7.621428 AGAATCTCAAATGATCGAACATGTT 57.379 32.000 11.78 11.78 0.00 2.71
1481 1994 7.692088 AGAATCTCAAATGATCGAACATGTTC 58.308 34.615 25.68 25.68 36.29 3.18
1482 1995 6.990341 ATCTCAAATGATCGAACATGTTCA 57.010 33.333 32.06 21.47 39.46 3.18
1483 1996 6.990341 TCTCAAATGATCGAACATGTTCAT 57.010 33.333 32.06 24.40 39.46 2.57
1484 1997 7.008440 TCTCAAATGATCGAACATGTTCATC 57.992 36.000 32.06 29.04 39.46 2.92
1485 1998 6.594937 TCTCAAATGATCGAACATGTTCATCA 59.405 34.615 32.28 32.28 39.25 3.07
1486 1999 7.119553 TCTCAAATGATCGAACATGTTCATCAA 59.880 33.333 32.99 23.95 38.85 2.57
1487 2000 7.764331 TCAAATGATCGAACATGTTCATCAAT 58.236 30.769 32.99 27.84 38.85 2.57
1488 2001 8.245491 TCAAATGATCGAACATGTTCATCAATT 58.755 29.630 32.99 30.01 38.85 2.32
1489 2002 9.505995 CAAATGATCGAACATGTTCATCAATTA 57.494 29.630 32.99 21.46 38.85 1.40
1490 2003 9.507280 AAATGATCGAACATGTTCATCAATTAC 57.493 29.630 32.99 19.96 38.85 1.89
1491 2004 7.015226 TGATCGAACATGTTCATCAATTACC 57.985 36.000 30.40 16.31 39.46 2.85
1492 2005 6.597280 TGATCGAACATGTTCATCAATTACCA 59.403 34.615 30.40 17.80 39.46 3.25
1493 2006 6.809630 TCGAACATGTTCATCAATTACCAA 57.190 33.333 32.06 5.39 39.46 3.67
1494 2007 6.841119 TCGAACATGTTCATCAATTACCAAG 58.159 36.000 32.06 14.87 39.46 3.61
1495 2008 6.652900 TCGAACATGTTCATCAATTACCAAGA 59.347 34.615 32.06 16.63 39.46 3.02
1496 2009 6.742718 CGAACATGTTCATCAATTACCAAGAC 59.257 38.462 32.06 5.78 39.46 3.01
1497 2010 7.523293 AACATGTTCATCAATTACCAAGACA 57.477 32.000 4.92 0.00 0.00 3.41
1498 2011 7.523293 ACATGTTCATCAATTACCAAGACAA 57.477 32.000 0.00 0.00 0.00 3.18
1499 2012 7.596494 ACATGTTCATCAATTACCAAGACAAG 58.404 34.615 0.00 0.00 0.00 3.16
1500 2013 7.448161 ACATGTTCATCAATTACCAAGACAAGA 59.552 33.333 0.00 0.00 0.00 3.02
1501 2014 7.815840 TGTTCATCAATTACCAAGACAAGAA 57.184 32.000 0.00 0.00 0.00 2.52
1502 2015 8.231692 TGTTCATCAATTACCAAGACAAGAAA 57.768 30.769 0.00 0.00 0.00 2.52
1503 2016 8.690884 TGTTCATCAATTACCAAGACAAGAAAA 58.309 29.630 0.00 0.00 0.00 2.29
1504 2017 9.528018 GTTCATCAATTACCAAGACAAGAAAAA 57.472 29.630 0.00 0.00 0.00 1.94
1559 2072 8.514330 ACCAAGACTAATTGACTACAAAAACA 57.486 30.769 0.00 0.00 39.54 2.83
1560 2073 9.131791 ACCAAGACTAATTGACTACAAAAACAT 57.868 29.630 0.00 0.00 39.54 2.71
1561 2074 9.965824 CCAAGACTAATTGACTACAAAAACATT 57.034 29.630 0.00 0.00 39.54 2.71
1572 2085 9.897744 TGACTACAAAAACATTCTCAAATGATC 57.102 29.630 5.22 0.00 44.25 2.92
1573 2086 8.955061 ACTACAAAAACATTCTCAAATGATCG 57.045 30.769 5.22 0.00 44.25 3.69
1574 2087 8.783093 ACTACAAAAACATTCTCAAATGATCGA 58.217 29.630 5.22 0.00 44.25 3.59
1575 2088 9.611284 CTACAAAAACATTCTCAAATGATCGAA 57.389 29.630 5.22 0.00 44.25 3.71
1576 2089 8.285776 ACAAAAACATTCTCAAATGATCGAAC 57.714 30.769 5.22 0.00 44.25 3.95
1577 2090 7.920151 ACAAAAACATTCTCAAATGATCGAACA 59.080 29.630 0.00 0.00 44.25 3.18
1578 2091 8.918658 CAAAAACATTCTCAAATGATCGAACAT 58.081 29.630 1.78 1.78 44.25 2.71
1579 2092 8.456904 AAAACATTCTCAAATGATCGAACATG 57.543 30.769 9.11 0.00 44.25 3.21
1580 2093 6.748333 ACATTCTCAAATGATCGAACATGT 57.252 33.333 9.11 0.00 44.25 3.21
1581 2094 7.149569 ACATTCTCAAATGATCGAACATGTT 57.850 32.000 11.78 11.78 44.25 2.71
1582 2095 7.246311 ACATTCTCAAATGATCGAACATGTTC 58.754 34.615 25.68 25.68 44.25 3.18
1595 2108 5.480281 GAACATGTTCGTTTTATGTGTGC 57.520 39.130 22.09 0.00 35.39 4.57
1596 2109 3.550561 ACATGTTCGTTTTATGTGTGCG 58.449 40.909 0.00 0.00 34.04 5.34
1597 2110 2.025544 TGTTCGTTTTATGTGTGCGC 57.974 45.000 0.00 0.00 0.00 6.09
1598 2111 0.965014 GTTCGTTTTATGTGTGCGCG 59.035 50.000 0.00 0.00 0.00 6.86
1599 2112 0.723129 TTCGTTTTATGTGTGCGCGC 60.723 50.000 27.26 27.26 0.00 6.86
1600 2113 1.154488 CGTTTTATGTGTGCGCGCT 60.154 52.632 33.29 14.40 0.00 5.92
1601 2114 1.120147 CGTTTTATGTGTGCGCGCTC 61.120 55.000 33.29 29.03 0.00 5.03
1602 2115 1.120147 GTTTTATGTGTGCGCGCTCG 61.120 55.000 33.29 0.00 39.07 5.03
1603 2116 1.561717 TTTTATGTGTGCGCGCTCGT 61.562 50.000 33.29 23.38 38.14 4.18
1604 2117 2.221704 TTTATGTGTGCGCGCTCGTG 62.222 55.000 33.29 0.00 38.14 4.35
1605 2118 3.907481 TATGTGTGCGCGCTCGTGT 62.907 57.895 33.29 19.00 38.14 4.49
1612 2125 4.339809 CGCGCTCGTGTGTGTGTG 62.340 66.667 5.56 0.00 0.00 3.82
1613 2126 3.261951 GCGCTCGTGTGTGTGTGT 61.262 61.111 0.00 0.00 0.00 3.72
1614 2127 2.620459 CGCTCGTGTGTGTGTGTG 59.380 61.111 0.00 0.00 0.00 3.82
1615 2128 2.164663 CGCTCGTGTGTGTGTGTGT 61.165 57.895 0.00 0.00 0.00 3.72
1616 2129 1.348250 GCTCGTGTGTGTGTGTGTG 59.652 57.895 0.00 0.00 0.00 3.82
1617 2130 1.358725 GCTCGTGTGTGTGTGTGTGT 61.359 55.000 0.00 0.00 0.00 3.72
1618 2131 0.369931 CTCGTGTGTGTGTGTGTGTG 59.630 55.000 0.00 0.00 0.00 3.82
1619 2132 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
1620 2133 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1621 2134 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1622 2135 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1623 2136 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1624 2137 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1625 2138 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1626 2139 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1627 2140 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1628 2141 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1629 2142 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1630 2143 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1631 2144 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1632 2145 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1633 2146 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1634 2147 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1635 2148 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1636 2149 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
1637 2150 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
1638 2151 3.126171 GTGTGTGTGTGTGTGTGTGTATT 59.874 43.478 0.00 0.00 0.00 1.89
1639 2152 4.330347 GTGTGTGTGTGTGTGTGTGTATTA 59.670 41.667 0.00 0.00 0.00 0.98
1640 2153 5.007234 GTGTGTGTGTGTGTGTGTGTATTAT 59.993 40.000 0.00 0.00 0.00 1.28
1641 2154 6.201234 GTGTGTGTGTGTGTGTGTGTATTATA 59.799 38.462 0.00 0.00 0.00 0.98
1642 2155 6.931840 TGTGTGTGTGTGTGTGTGTATTATAT 59.068 34.615 0.00 0.00 0.00 0.86
1643 2156 7.442666 TGTGTGTGTGTGTGTGTGTATTATATT 59.557 33.333 0.00 0.00 0.00 1.28
1644 2157 7.955324 GTGTGTGTGTGTGTGTGTATTATATTC 59.045 37.037 0.00 0.00 0.00 1.75
1645 2158 7.118535 TGTGTGTGTGTGTGTGTATTATATTCC 59.881 37.037 0.00 0.00 0.00 3.01
1646 2159 7.333423 GTGTGTGTGTGTGTGTATTATATTCCT 59.667 37.037 0.00 0.00 0.00 3.36
1647 2160 7.333174 TGTGTGTGTGTGTGTATTATATTCCTG 59.667 37.037 0.00 0.00 0.00 3.86
1648 2161 7.547722 GTGTGTGTGTGTGTATTATATTCCTGA 59.452 37.037 0.00 0.00 0.00 3.86
1649 2162 8.097662 TGTGTGTGTGTGTATTATATTCCTGAA 58.902 33.333 0.00 0.00 0.00 3.02
1650 2163 9.109393 GTGTGTGTGTGTATTATATTCCTGAAT 57.891 33.333 0.00 0.00 34.93 2.57
1679 2192 9.686683 ACTAATAATTAAAGTTGATCACAGGCT 57.313 29.630 0.00 0.00 0.00 4.58
1682 2195 4.503741 TTAAAGTTGATCACAGGCTTGC 57.496 40.909 0.00 0.00 0.00 4.01
1683 2196 1.985473 AAGTTGATCACAGGCTTGCA 58.015 45.000 0.00 0.00 0.00 4.08
1684 2197 1.531423 AGTTGATCACAGGCTTGCAG 58.469 50.000 0.00 0.00 0.00 4.41
1685 2198 0.109412 GTTGATCACAGGCTTGCAGC 60.109 55.000 0.00 0.11 41.46 5.25
1686 2199 0.251033 TTGATCACAGGCTTGCAGCT 60.251 50.000 0.00 0.00 41.99 4.24
1687 2200 0.251033 TGATCACAGGCTTGCAGCTT 60.251 50.000 0.00 0.00 41.99 3.74
1688 2201 0.886563 GATCACAGGCTTGCAGCTTT 59.113 50.000 0.00 0.00 41.99 3.51
1689 2202 0.601558 ATCACAGGCTTGCAGCTTTG 59.398 50.000 0.00 8.89 41.99 2.77
1690 2203 0.466007 TCACAGGCTTGCAGCTTTGA 60.466 50.000 0.00 9.56 41.99 2.69
1691 2204 0.601558 CACAGGCTTGCAGCTTTGAT 59.398 50.000 0.00 3.56 41.99 2.57
1692 2205 1.814394 CACAGGCTTGCAGCTTTGATA 59.186 47.619 0.00 0.00 41.99 2.15
1693 2206 2.426024 CACAGGCTTGCAGCTTTGATAT 59.574 45.455 0.00 0.00 41.99 1.63
1694 2207 2.686915 ACAGGCTTGCAGCTTTGATATC 59.313 45.455 0.00 0.00 41.99 1.63
1695 2208 2.950309 CAGGCTTGCAGCTTTGATATCT 59.050 45.455 3.98 0.00 41.99 1.98
1696 2209 3.380637 CAGGCTTGCAGCTTTGATATCTT 59.619 43.478 3.98 0.00 41.99 2.40
1697 2210 3.380637 AGGCTTGCAGCTTTGATATCTTG 59.619 43.478 3.98 0.00 41.99 3.02
1698 2211 3.379372 GGCTTGCAGCTTTGATATCTTGA 59.621 43.478 3.98 0.00 41.99 3.02
1699 2212 4.037684 GGCTTGCAGCTTTGATATCTTGAT 59.962 41.667 3.98 0.00 41.99 2.57
1700 2213 5.213675 GCTTGCAGCTTTGATATCTTGATC 58.786 41.667 3.98 0.00 38.45 2.92
1701 2214 5.008811 GCTTGCAGCTTTGATATCTTGATCT 59.991 40.000 3.98 0.00 38.45 2.75
1702 2215 6.615264 TTGCAGCTTTGATATCTTGATCTC 57.385 37.500 3.98 0.00 0.00 2.75
1703 2216 5.926663 TGCAGCTTTGATATCTTGATCTCT 58.073 37.500 3.98 0.00 0.00 3.10
1704 2217 7.059202 TGCAGCTTTGATATCTTGATCTCTA 57.941 36.000 3.98 0.00 0.00 2.43
1705 2218 7.677892 TGCAGCTTTGATATCTTGATCTCTAT 58.322 34.615 3.98 0.00 0.00 1.98
1706 2219 8.155510 TGCAGCTTTGATATCTTGATCTCTATT 58.844 33.333 3.98 0.00 0.00 1.73
1707 2220 9.001542 GCAGCTTTGATATCTTGATCTCTATTT 57.998 33.333 3.98 0.00 0.00 1.40
1857 2370 8.528917 AGACTCCTACAAAAACAAAAACAAAC 57.471 30.769 0.00 0.00 0.00 2.93
1889 2402 2.373169 AGAGATTGCAAGAACTCCCACA 59.627 45.455 19.97 0.00 0.00 4.17
1939 2873 2.657296 CGGGGTAGCGCACATACG 60.657 66.667 11.47 4.60 0.00 3.06
1952 2886 1.117150 ACATACGCTGATTACCGGGT 58.883 50.000 6.32 4.46 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.473778 CGATCTTTTATATGGTATCAGCCTCG 59.526 42.308 0.00 0.00 0.00 4.63
1 2 6.758886 CCGATCTTTTATATGGTATCAGCCTC 59.241 42.308 0.00 0.00 0.00 4.70
2 3 6.352222 CCCGATCTTTTATATGGTATCAGCCT 60.352 42.308 0.00 0.00 0.00 4.58
3 4 5.817816 CCCGATCTTTTATATGGTATCAGCC 59.182 44.000 0.00 0.00 0.00 4.85
4 5 6.313905 CACCCGATCTTTTATATGGTATCAGC 59.686 42.308 0.00 0.00 0.00 4.26
5 6 6.313905 GCACCCGATCTTTTATATGGTATCAG 59.686 42.308 0.00 0.00 0.00 2.90
6 7 6.170506 GCACCCGATCTTTTATATGGTATCA 58.829 40.000 0.00 0.00 0.00 2.15
7 8 6.170506 TGCACCCGATCTTTTATATGGTATC 58.829 40.000 0.00 0.00 0.00 2.24
8 9 6.121776 TGCACCCGATCTTTTATATGGTAT 57.878 37.500 0.00 0.00 0.00 2.73
9 10 5.554437 TGCACCCGATCTTTTATATGGTA 57.446 39.130 0.00 0.00 0.00 3.25
10 11 4.431416 TGCACCCGATCTTTTATATGGT 57.569 40.909 0.00 0.00 0.00 3.55
11 12 6.458751 GCATATGCACCCGATCTTTTATATGG 60.459 42.308 22.84 0.00 41.59 2.74
12 13 6.489675 GCATATGCACCCGATCTTTTATATG 58.510 40.000 22.84 0.00 41.59 1.78
13 14 6.683974 GCATATGCACCCGATCTTTTATAT 57.316 37.500 22.84 0.00 41.59 0.86
33 34 9.417561 ACCCTATGTACTTATATATACGTGCAT 57.582 33.333 25.40 25.40 39.67 3.96
34 35 8.812513 ACCCTATGTACTTATATATACGTGCA 57.187 34.615 18.07 18.07 33.29 4.57
37 38 9.566432 GGCTACCCTATGTACTTATATATACGT 57.434 37.037 7.04 7.04 0.00 3.57
38 39 9.565090 TGGCTACCCTATGTACTTATATATACG 57.435 37.037 0.00 0.00 0.00 3.06
40 41 9.565090 CGTGGCTACCCTATGTACTTATATATA 57.435 37.037 0.00 0.00 0.00 0.86
41 42 8.057623 ACGTGGCTACCCTATGTACTTATATAT 58.942 37.037 0.00 0.00 0.00 0.86
42 43 7.405292 ACGTGGCTACCCTATGTACTTATATA 58.595 38.462 0.00 0.00 0.00 0.86
43 44 6.251471 ACGTGGCTACCCTATGTACTTATAT 58.749 40.000 0.00 0.00 0.00 0.86
44 45 5.634118 ACGTGGCTACCCTATGTACTTATA 58.366 41.667 0.00 0.00 0.00 0.98
45 46 4.477249 ACGTGGCTACCCTATGTACTTAT 58.523 43.478 0.00 0.00 0.00 1.73
46 47 3.885297 GACGTGGCTACCCTATGTACTTA 59.115 47.826 0.00 0.00 0.00 2.24
47 48 2.692041 GACGTGGCTACCCTATGTACTT 59.308 50.000 0.00 0.00 0.00 2.24
48 49 2.305009 GACGTGGCTACCCTATGTACT 58.695 52.381 0.00 0.00 0.00 2.73
49 50 1.339291 GGACGTGGCTACCCTATGTAC 59.661 57.143 0.00 0.00 0.00 2.90
50 51 1.216175 AGGACGTGGCTACCCTATGTA 59.784 52.381 0.00 0.00 0.00 2.29
51 52 0.032416 AGGACGTGGCTACCCTATGT 60.032 55.000 0.00 0.00 0.00 2.29
52 53 0.674534 GAGGACGTGGCTACCCTATG 59.325 60.000 0.00 0.00 0.00 2.23
53 54 0.260816 TGAGGACGTGGCTACCCTAT 59.739 55.000 0.00 0.00 0.00 2.57
54 55 0.040058 TTGAGGACGTGGCTACCCTA 59.960 55.000 0.00 0.00 0.00 3.53
55 56 1.229082 TTGAGGACGTGGCTACCCT 60.229 57.895 0.00 0.00 0.00 4.34
56 57 1.079336 GTTGAGGACGTGGCTACCC 60.079 63.158 0.00 0.00 0.00 3.69
57 58 1.180029 TAGTTGAGGACGTGGCTACC 58.820 55.000 0.00 0.00 0.00 3.18
58 59 3.379372 TGTATAGTTGAGGACGTGGCTAC 59.621 47.826 0.00 0.00 0.00 3.58
59 60 3.623703 TGTATAGTTGAGGACGTGGCTA 58.376 45.455 0.00 0.00 0.00 3.93
60 61 2.453521 TGTATAGTTGAGGACGTGGCT 58.546 47.619 0.00 0.00 0.00 4.75
61 62 2.953466 TGTATAGTTGAGGACGTGGC 57.047 50.000 0.00 0.00 0.00 5.01
62 63 3.446161 TCCTTGTATAGTTGAGGACGTGG 59.554 47.826 0.00 0.00 33.51 4.94
63 64 4.713824 TCCTTGTATAGTTGAGGACGTG 57.286 45.455 0.00 0.00 33.51 4.49
64 65 4.159879 CCTTCCTTGTATAGTTGAGGACGT 59.840 45.833 0.00 0.00 37.99 4.34
65 66 4.401519 TCCTTCCTTGTATAGTTGAGGACG 59.598 45.833 0.00 0.00 37.99 4.79
66 67 5.422650 ACTCCTTCCTTGTATAGTTGAGGAC 59.577 44.000 0.00 0.00 37.99 3.85
67 68 5.590818 ACTCCTTCCTTGTATAGTTGAGGA 58.409 41.667 0.00 0.00 36.55 3.71
68 69 5.941555 ACTCCTTCCTTGTATAGTTGAGG 57.058 43.478 0.00 0.00 0.00 3.86
69 70 6.508777 GCTACTCCTTCCTTGTATAGTTGAG 58.491 44.000 0.00 0.00 0.00 3.02
70 71 5.067413 CGCTACTCCTTCCTTGTATAGTTGA 59.933 44.000 0.00 0.00 0.00 3.18
71 72 5.282510 CGCTACTCCTTCCTTGTATAGTTG 58.717 45.833 0.00 0.00 0.00 3.16
72 73 4.202131 GCGCTACTCCTTCCTTGTATAGTT 60.202 45.833 0.00 0.00 0.00 2.24
73 74 3.318557 GCGCTACTCCTTCCTTGTATAGT 59.681 47.826 0.00 0.00 0.00 2.12
74 75 3.570550 AGCGCTACTCCTTCCTTGTATAG 59.429 47.826 8.99 0.00 0.00 1.31
75 76 3.563223 AGCGCTACTCCTTCCTTGTATA 58.437 45.455 8.99 0.00 0.00 1.47
76 77 2.389715 AGCGCTACTCCTTCCTTGTAT 58.610 47.619 8.99 0.00 0.00 2.29
77 78 1.848652 AGCGCTACTCCTTCCTTGTA 58.151 50.000 8.99 0.00 0.00 2.41
78 79 0.977395 AAGCGCTACTCCTTCCTTGT 59.023 50.000 12.05 0.00 0.00 3.16
79 80 1.338200 ACAAGCGCTACTCCTTCCTTG 60.338 52.381 12.05 3.13 36.62 3.61
80 81 0.977395 ACAAGCGCTACTCCTTCCTT 59.023 50.000 12.05 0.00 0.00 3.36
81 82 0.977395 AACAAGCGCTACTCCTTCCT 59.023 50.000 12.05 0.00 0.00 3.36
82 83 1.079503 CAACAAGCGCTACTCCTTCC 58.920 55.000 12.05 0.00 0.00 3.46
83 84 1.797025 ACAACAAGCGCTACTCCTTC 58.203 50.000 12.05 0.00 0.00 3.46
84 85 2.036733 TGTACAACAAGCGCTACTCCTT 59.963 45.455 12.05 0.00 0.00 3.36
85 86 1.616865 TGTACAACAAGCGCTACTCCT 59.383 47.619 12.05 0.00 0.00 3.69
86 87 2.074547 TGTACAACAAGCGCTACTCC 57.925 50.000 12.05 0.00 0.00 3.85
112 113 7.747799 GTGTTGAGATGTATATTATGCATGTGC 59.252 37.037 10.16 0.00 35.68 4.57
113 114 8.996271 AGTGTTGAGATGTATATTATGCATGTG 58.004 33.333 10.16 0.00 35.68 3.21
117 118 9.696917 CAGTAGTGTTGAGATGTATATTATGCA 57.303 33.333 0.00 0.00 0.00 3.96
118 119 9.698309 ACAGTAGTGTTGAGATGTATATTATGC 57.302 33.333 0.00 0.00 30.30 3.14
162 163 9.310716 TGCGCAAATTCATGATTAATTTCATTA 57.689 25.926 8.16 0.00 35.00 1.90
163 164 8.199176 TGCGCAAATTCATGATTAATTTCATT 57.801 26.923 8.16 0.00 35.00 2.57
164 165 7.773864 TGCGCAAATTCATGATTAATTTCAT 57.226 28.000 8.16 0.00 35.00 2.57
165 166 7.544915 TCTTGCGCAAATTCATGATTAATTTCA 59.455 29.630 25.01 0.00 35.00 2.69
166 167 7.897920 TCTTGCGCAAATTCATGATTAATTTC 58.102 30.769 25.01 0.00 35.00 2.17
167 168 7.830940 TCTTGCGCAAATTCATGATTAATTT 57.169 28.000 25.01 0.00 37.08 1.82
168 169 8.428186 AATCTTGCGCAAATTCATGATTAATT 57.572 26.923 25.01 5.08 36.18 1.40
169 170 7.170320 GGAATCTTGCGCAAATTCATGATTAAT 59.830 33.333 33.48 18.12 37.27 1.40
170 171 6.476380 GGAATCTTGCGCAAATTCATGATTAA 59.524 34.615 33.48 12.59 37.27 1.40
171 172 5.978919 GGAATCTTGCGCAAATTCATGATTA 59.021 36.000 33.48 12.74 37.27 1.75
172 173 4.807304 GGAATCTTGCGCAAATTCATGATT 59.193 37.500 33.48 29.67 38.76 2.57
173 174 4.142116 TGGAATCTTGCGCAAATTCATGAT 60.142 37.500 33.48 25.54 32.27 2.45
174 175 3.193056 TGGAATCTTGCGCAAATTCATGA 59.807 39.130 33.48 24.79 32.27 3.07
175 176 3.513662 TGGAATCTTGCGCAAATTCATG 58.486 40.909 33.48 21.64 32.27 3.07
176 177 3.872511 TGGAATCTTGCGCAAATTCAT 57.127 38.095 33.48 20.61 32.27 2.57
177 178 3.657015 TTGGAATCTTGCGCAAATTCA 57.343 38.095 33.48 23.45 32.27 2.57
178 179 5.101628 TGTATTGGAATCTTGCGCAAATTC 58.898 37.500 29.65 29.65 0.00 2.17
179 180 5.070770 TGTATTGGAATCTTGCGCAAATT 57.929 34.783 25.01 23.20 0.00 1.82
180 181 4.158394 ACTGTATTGGAATCTTGCGCAAAT 59.842 37.500 25.01 16.71 0.00 2.32
181 182 3.505680 ACTGTATTGGAATCTTGCGCAAA 59.494 39.130 25.01 15.16 0.00 3.68
182 183 3.081061 ACTGTATTGGAATCTTGCGCAA 58.919 40.909 23.48 23.48 0.00 4.85
183 184 2.710377 ACTGTATTGGAATCTTGCGCA 58.290 42.857 5.66 5.66 0.00 6.09
184 185 3.764885 AACTGTATTGGAATCTTGCGC 57.235 42.857 0.00 0.00 0.00 6.09
185 186 9.950680 ATAAAATAACTGTATTGGAATCTTGCG 57.049 29.630 0.00 0.00 30.04 4.85
234 235 9.933723 CCTTTCAATTTCAATGAAAAGGACTAT 57.066 29.630 12.75 0.00 43.87 2.12
235 236 9.142014 TCCTTTCAATTTCAATGAAAAGGACTA 57.858 29.630 17.47 7.46 43.87 2.59
236 237 8.021898 TCCTTTCAATTTCAATGAAAAGGACT 57.978 30.769 17.47 0.00 43.87 3.85
237 238 8.143835 TCTCCTTTCAATTTCAATGAAAAGGAC 58.856 33.333 17.47 0.00 43.87 3.85
238 239 8.143835 GTCTCCTTTCAATTTCAATGAAAAGGA 58.856 33.333 19.26 19.26 43.87 3.36
239 240 8.146412 AGTCTCCTTTCAATTTCAATGAAAAGG 58.854 33.333 12.75 13.61 43.87 3.11
241 242 9.965824 GTAGTCTCCTTTCAATTTCAATGAAAA 57.034 29.630 12.75 0.00 43.87 2.29
242 243 9.354673 AGTAGTCTCCTTTCAATTTCAATGAAA 57.645 29.630 11.10 11.10 42.73 2.69
243 244 8.786898 CAGTAGTCTCCTTTCAATTTCAATGAA 58.213 33.333 0.00 0.00 35.11 2.57
244 245 7.391554 CCAGTAGTCTCCTTTCAATTTCAATGA 59.608 37.037 0.00 0.00 0.00 2.57
245 246 7.175641 ACCAGTAGTCTCCTTTCAATTTCAATG 59.824 37.037 0.00 0.00 0.00 2.82
246 247 7.234355 ACCAGTAGTCTCCTTTCAATTTCAAT 58.766 34.615 0.00 0.00 0.00 2.57
247 248 6.601332 ACCAGTAGTCTCCTTTCAATTTCAA 58.399 36.000 0.00 0.00 0.00 2.69
248 249 6.187727 ACCAGTAGTCTCCTTTCAATTTCA 57.812 37.500 0.00 0.00 0.00 2.69
249 250 5.348997 CGACCAGTAGTCTCCTTTCAATTTC 59.651 44.000 0.00 0.00 43.91 2.17
250 251 5.238583 CGACCAGTAGTCTCCTTTCAATTT 58.761 41.667 0.00 0.00 43.91 1.82
251 252 4.322801 CCGACCAGTAGTCTCCTTTCAATT 60.323 45.833 0.00 0.00 43.91 2.32
252 253 3.195825 CCGACCAGTAGTCTCCTTTCAAT 59.804 47.826 0.00 0.00 43.91 2.57
253 254 2.561419 CCGACCAGTAGTCTCCTTTCAA 59.439 50.000 0.00 0.00 43.91 2.69
254 255 2.168496 CCGACCAGTAGTCTCCTTTCA 58.832 52.381 0.00 0.00 43.91 2.69
255 256 1.135053 GCCGACCAGTAGTCTCCTTTC 60.135 57.143 0.00 0.00 43.91 2.62
256 257 0.896226 GCCGACCAGTAGTCTCCTTT 59.104 55.000 0.00 0.00 43.91 3.11
257 258 0.971447 GGCCGACCAGTAGTCTCCTT 60.971 60.000 0.00 0.00 43.91 3.36
258 259 1.380112 GGCCGACCAGTAGTCTCCT 60.380 63.158 0.00 0.00 43.91 3.69
259 260 2.424733 GGGCCGACCAGTAGTCTCC 61.425 68.421 0.00 0.00 43.91 3.71
260 261 2.772691 CGGGCCGACCAGTAGTCTC 61.773 68.421 24.41 0.00 43.91 3.36
261 262 2.754658 CGGGCCGACCAGTAGTCT 60.755 66.667 24.41 0.00 43.91 3.24
262 263 3.061260 GACGGGCCGACCAGTAGTC 62.061 68.421 35.78 13.48 45.19 2.59
263 264 3.066814 GACGGGCCGACCAGTAGT 61.067 66.667 35.78 7.12 45.19 2.73
264 265 2.162338 TTTGACGGGCCGACCAGTAG 62.162 60.000 35.78 0.00 45.19 2.57
265 266 1.546589 ATTTGACGGGCCGACCAGTA 61.547 55.000 35.78 19.52 45.19 2.74
267 268 1.644786 GAATTTGACGGGCCGACCAG 61.645 60.000 35.78 2.65 40.22 4.00
268 269 1.673009 GAATTTGACGGGCCGACCA 60.673 57.895 35.78 25.64 40.22 4.02
269 270 0.958876 AAGAATTTGACGGGCCGACC 60.959 55.000 35.78 23.27 0.00 4.79
270 271 1.729284 TAAGAATTTGACGGGCCGAC 58.271 50.000 35.78 28.10 0.00 4.79
271 272 2.476126 TTAAGAATTTGACGGGCCGA 57.524 45.000 35.78 10.94 0.00 5.54
272 273 2.486592 AGTTTAAGAATTTGACGGGCCG 59.513 45.455 27.06 27.06 0.00 6.13
273 274 4.698780 AGTAGTTTAAGAATTTGACGGGCC 59.301 41.667 0.00 0.00 0.00 5.80
274 275 5.163784 GGAGTAGTTTAAGAATTTGACGGGC 60.164 44.000 0.00 0.00 0.00 6.13
275 276 5.353400 GGGAGTAGTTTAAGAATTTGACGGG 59.647 44.000 0.00 0.00 0.00 5.28
276 277 6.171213 AGGGAGTAGTTTAAGAATTTGACGG 58.829 40.000 0.00 0.00 0.00 4.79
277 278 6.313164 GGAGGGAGTAGTTTAAGAATTTGACG 59.687 42.308 0.00 0.00 0.00 4.35
278 279 6.313164 CGGAGGGAGTAGTTTAAGAATTTGAC 59.687 42.308 0.00 0.00 0.00 3.18
279 280 6.013984 ACGGAGGGAGTAGTTTAAGAATTTGA 60.014 38.462 0.00 0.00 0.00 2.69
280 281 6.171213 ACGGAGGGAGTAGTTTAAGAATTTG 58.829 40.000 0.00 0.00 0.00 2.32
281 282 6.370186 ACGGAGGGAGTAGTTTAAGAATTT 57.630 37.500 0.00 0.00 0.00 1.82
282 283 6.370186 AACGGAGGGAGTAGTTTAAGAATT 57.630 37.500 0.00 0.00 0.00 2.17
283 284 6.370186 AAACGGAGGGAGTAGTTTAAGAAT 57.630 37.500 0.00 0.00 35.36 2.40
284 285 5.565439 CGAAACGGAGGGAGTAGTTTAAGAA 60.565 44.000 0.00 0.00 37.00 2.52
285 286 4.082571 CGAAACGGAGGGAGTAGTTTAAGA 60.083 45.833 0.00 0.00 37.00 2.10
286 287 4.082571 TCGAAACGGAGGGAGTAGTTTAAG 60.083 45.833 0.00 0.00 37.00 1.85
287 288 3.826157 TCGAAACGGAGGGAGTAGTTTAA 59.174 43.478 0.00 0.00 37.00 1.52
288 289 3.420893 TCGAAACGGAGGGAGTAGTTTA 58.579 45.455 0.00 0.00 37.00 2.01
289 290 2.242043 TCGAAACGGAGGGAGTAGTTT 58.758 47.619 0.00 0.00 39.21 2.66
290 291 1.915141 TCGAAACGGAGGGAGTAGTT 58.085 50.000 0.00 0.00 0.00 2.24
291 292 2.140839 ATCGAAACGGAGGGAGTAGT 57.859 50.000 0.00 0.00 0.00 2.73
292 293 3.521947 AAATCGAAACGGAGGGAGTAG 57.478 47.619 0.00 0.00 0.00 2.57
293 294 3.967332 AAAATCGAAACGGAGGGAGTA 57.033 42.857 0.00 0.00 0.00 2.59
294 295 2.853235 AAAATCGAAACGGAGGGAGT 57.147 45.000 0.00 0.00 0.00 3.85
295 296 2.093783 CGAAAAATCGAAACGGAGGGAG 59.906 50.000 0.00 0.00 34.64 4.30
296 297 2.070783 CGAAAAATCGAAACGGAGGGA 58.929 47.619 0.00 0.00 34.64 4.20
297 298 2.070783 TCGAAAAATCGAAACGGAGGG 58.929 47.619 0.00 0.00 39.34 4.30
306 307 7.179927 TGTGACAAGTAATTCGAAAAATCGA 57.820 32.000 0.00 0.00 40.66 3.59
307 308 6.519761 CCTGTGACAAGTAATTCGAAAAATCG 59.480 38.462 0.00 0.00 0.00 3.34
308 309 7.360361 ACCTGTGACAAGTAATTCGAAAAATC 58.640 34.615 0.00 0.00 0.00 2.17
309 310 7.272037 ACCTGTGACAAGTAATTCGAAAAAT 57.728 32.000 0.00 0.00 0.00 1.82
310 311 6.687081 ACCTGTGACAAGTAATTCGAAAAA 57.313 33.333 0.00 0.00 0.00 1.94
311 312 7.972832 ATACCTGTGACAAGTAATTCGAAAA 57.027 32.000 0.00 0.00 0.00 2.29
312 313 8.525316 TCTATACCTGTGACAAGTAATTCGAAA 58.475 33.333 0.00 0.00 0.00 3.46
313 314 8.058667 TCTATACCTGTGACAAGTAATTCGAA 57.941 34.615 0.00 0.00 0.00 3.71
314 315 7.634671 TCTATACCTGTGACAAGTAATTCGA 57.365 36.000 0.00 0.00 0.00 3.71
375 376 9.056005 CCTCCGTTTCAAATTATTCATCATAGA 57.944 33.333 0.00 0.00 0.00 1.98
376 377 8.292448 CCCTCCGTTTCAAATTATTCATCATAG 58.708 37.037 0.00 0.00 0.00 2.23
377 378 7.996066 TCCCTCCGTTTCAAATTATTCATCATA 59.004 33.333 0.00 0.00 0.00 2.15
378 379 6.833416 TCCCTCCGTTTCAAATTATTCATCAT 59.167 34.615 0.00 0.00 0.00 2.45
379 380 6.184068 TCCCTCCGTTTCAAATTATTCATCA 58.816 36.000 0.00 0.00 0.00 3.07
380 381 6.318900 ACTCCCTCCGTTTCAAATTATTCATC 59.681 38.462 0.00 0.00 0.00 2.92
381 382 6.187682 ACTCCCTCCGTTTCAAATTATTCAT 58.812 36.000 0.00 0.00 0.00 2.57
382 383 5.566469 ACTCCCTCCGTTTCAAATTATTCA 58.434 37.500 0.00 0.00 0.00 2.57
383 384 6.596497 TGTACTCCCTCCGTTTCAAATTATTC 59.404 38.462 0.00 0.00 0.00 1.75
384 385 6.478129 TGTACTCCCTCCGTTTCAAATTATT 58.522 36.000 0.00 0.00 0.00 1.40
385 386 6.057321 TGTACTCCCTCCGTTTCAAATTAT 57.943 37.500 0.00 0.00 0.00 1.28
386 387 5.486735 TGTACTCCCTCCGTTTCAAATTA 57.513 39.130 0.00 0.00 0.00 1.40
387 388 4.360951 TGTACTCCCTCCGTTTCAAATT 57.639 40.909 0.00 0.00 0.00 1.82
388 389 4.225267 AGATGTACTCCCTCCGTTTCAAAT 59.775 41.667 0.00 0.00 0.00 2.32
389 390 3.581332 AGATGTACTCCCTCCGTTTCAAA 59.419 43.478 0.00 0.00 0.00 2.69
390 391 3.170717 AGATGTACTCCCTCCGTTTCAA 58.829 45.455 0.00 0.00 0.00 2.69
391 392 2.816411 AGATGTACTCCCTCCGTTTCA 58.184 47.619 0.00 0.00 0.00 2.69
392 393 3.889520 AAGATGTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
393 394 4.382793 GCTTAAGATGTACTCCCTCCGTTT 60.383 45.833 6.67 0.00 0.00 3.60
394 395 3.132467 GCTTAAGATGTACTCCCTCCGTT 59.868 47.826 6.67 0.00 0.00 4.44
395 396 2.694109 GCTTAAGATGTACTCCCTCCGT 59.306 50.000 6.67 0.00 0.00 4.69
396 397 2.287668 CGCTTAAGATGTACTCCCTCCG 60.288 54.545 6.67 0.00 0.00 4.63
397 398 2.957006 TCGCTTAAGATGTACTCCCTCC 59.043 50.000 6.67 0.00 0.00 4.30
398 399 4.098196 ACTTCGCTTAAGATGTACTCCCTC 59.902 45.833 6.67 0.00 38.67 4.30
399 400 4.024670 ACTTCGCTTAAGATGTACTCCCT 58.975 43.478 6.67 0.00 38.67 4.20
400 401 4.098196 AGACTTCGCTTAAGATGTACTCCC 59.902 45.833 6.67 0.00 38.67 4.30
468 469 5.127194 TGACGAGGACATGACTAGCTTATTT 59.873 40.000 0.00 0.00 0.00 1.40
614 617 5.663106 ACTGCTGAAATAGTGGAGGATAAGA 59.337 40.000 0.00 0.00 0.00 2.10
657 660 5.086104 ACTATTAGTGCTGAATTCCACGT 57.914 39.130 2.27 0.00 37.07 4.49
659 662 6.985188 TTGACTATTAGTGCTGAATTCCAC 57.015 37.500 0.00 4.91 0.00 4.02
760 773 4.039124 TGAAGATATGCAGCGAGATTGGTA 59.961 41.667 0.00 0.00 0.00 3.25
875 892 4.672550 CGTCTCGACTGATGGACG 57.327 61.111 8.02 8.02 43.74 4.79
876 893 1.267433 CGTACGTCTCGACTGATGGAC 60.267 57.143 7.22 0.16 34.36 4.02
890 907 2.195922 GTTGAACTGAACCACGTACGT 58.804 47.619 16.72 16.72 0.00 3.57
894 917 1.065709 ACCTGTTGAACTGAACCACGT 60.066 47.619 3.64 0.00 0.00 4.49
939 1122 5.990120 AGCCAGCTAAAGATTCACAAAAT 57.010 34.783 0.00 0.00 0.00 1.82
943 1126 6.658816 TCAAAATAGCCAGCTAAAGATTCACA 59.341 34.615 3.02 0.00 31.73 3.58
970 1157 7.332430 CGTACTGAGGACCTATAGATTGTAGAG 59.668 44.444 11.26 0.00 0.00 2.43
976 1163 6.436738 TCTCGTACTGAGGACCTATAGATT 57.563 41.667 11.26 0.00 45.32 2.40
977 1164 6.436738 TTCTCGTACTGAGGACCTATAGAT 57.563 41.667 11.26 0.00 45.32 1.98
978 1165 5.883685 TTCTCGTACTGAGGACCTATAGA 57.116 43.478 11.26 0.00 45.32 1.98
980 1167 6.183810 TCATTCTCGTACTGAGGACCTATA 57.816 41.667 12.62 0.00 45.32 1.31
1104 1296 3.131223 GGAAGACCTCGATGATCTTCACA 59.869 47.826 23.83 0.00 46.75 3.58
1199 1391 4.189580 GCTAGCCAATGCGGGGGA 62.190 66.667 2.29 0.00 44.33 4.81
1220 1412 0.757188 AAAACGGTGGGGCATCAACA 60.757 50.000 0.00 0.00 0.00 3.33
1221 1413 1.249407 TAAAACGGTGGGGCATCAAC 58.751 50.000 0.00 0.00 0.00 3.18
1229 1421 1.950909 ACACACACATAAAACGGTGGG 59.049 47.619 0.00 0.00 43.96 4.61
1249 1441 6.353404 TCAGGAACATAACACATACAGACA 57.647 37.500 0.00 0.00 0.00 3.41
1252 1444 9.988350 GTTTATTCAGGAACATAACACATACAG 57.012 33.333 0.00 0.00 0.00 2.74
1256 1448 8.593945 ATGGTTTATTCAGGAACATAACACAT 57.406 30.769 0.00 0.00 0.00 3.21
1265 1461 7.272978 TCACTAGCTATGGTTTATTCAGGAAC 58.727 38.462 0.00 0.00 0.00 3.62
1447 1960 9.822185 TCGATCATTTGAGATTCTTCTTATTGA 57.178 29.630 0.00 0.00 30.30 2.57
1450 1963 9.605275 TGTTCGATCATTTGAGATTCTTCTTAT 57.395 29.630 0.00 0.00 30.30 1.73
1451 1964 9.605275 ATGTTCGATCATTTGAGATTCTTCTTA 57.395 29.630 3.07 0.00 30.30 2.10
1452 1965 7.912056 TGTTCGATCATTTGAGATTCTTCTT 57.088 32.000 0.00 0.00 30.30 2.52
1453 1966 7.551974 ACATGTTCGATCATTTGAGATTCTTCT 59.448 33.333 6.24 0.00 33.88 2.85
1454 1967 7.692088 ACATGTTCGATCATTTGAGATTCTTC 58.308 34.615 6.24 0.00 0.00 2.87
1455 1968 7.621428 ACATGTTCGATCATTTGAGATTCTT 57.379 32.000 6.24 0.00 0.00 2.52
1456 1969 7.335171 TGAACATGTTCGATCATTTGAGATTCT 59.665 33.333 28.55 0.00 42.28 2.40
1457 1970 7.466805 TGAACATGTTCGATCATTTGAGATTC 58.533 34.615 28.55 4.90 42.28 2.52
1458 1971 7.381766 TGAACATGTTCGATCATTTGAGATT 57.618 32.000 28.55 0.00 42.28 2.40
1459 1972 6.990341 TGAACATGTTCGATCATTTGAGAT 57.010 33.333 28.55 0.00 42.28 2.75
1460 1973 6.594937 TGATGAACATGTTCGATCATTTGAGA 59.405 34.615 29.65 15.20 42.28 3.27
1461 1974 6.778108 TGATGAACATGTTCGATCATTTGAG 58.222 36.000 29.65 0.00 42.28 3.02
1462 1975 6.740411 TGATGAACATGTTCGATCATTTGA 57.260 33.333 29.65 16.11 42.28 2.69
1463 1976 7.980742 ATTGATGAACATGTTCGATCATTTG 57.019 32.000 31.55 1.29 42.28 2.32
1464 1977 9.507280 GTAATTGATGAACATGTTCGATCATTT 57.493 29.630 31.32 31.32 42.28 2.32
1465 1978 8.131100 GGTAATTGATGAACATGTTCGATCATT 58.869 33.333 31.55 27.71 42.28 2.57
1466 1979 7.282901 TGGTAATTGATGAACATGTTCGATCAT 59.717 33.333 31.55 25.38 42.28 2.45
1467 1980 6.597280 TGGTAATTGATGAACATGTTCGATCA 59.403 34.615 29.65 29.65 42.28 2.92
1468 1981 7.015226 TGGTAATTGATGAACATGTTCGATC 57.985 36.000 28.55 27.58 42.28 3.69
1469 1982 7.336679 TCTTGGTAATTGATGAACATGTTCGAT 59.663 33.333 28.55 22.70 42.28 3.59
1470 1983 6.652900 TCTTGGTAATTGATGAACATGTTCGA 59.347 34.615 28.55 19.64 42.28 3.71
1471 1984 6.742718 GTCTTGGTAATTGATGAACATGTTCG 59.257 38.462 28.55 12.88 42.28 3.95
1472 1985 7.592938 TGTCTTGGTAATTGATGAACATGTTC 58.407 34.615 28.10 28.10 39.91 3.18
1473 1986 7.523293 TGTCTTGGTAATTGATGAACATGTT 57.477 32.000 11.78 11.78 0.00 2.71
1474 1987 7.448161 TCTTGTCTTGGTAATTGATGAACATGT 59.552 33.333 0.00 0.00 0.00 3.21
1475 1988 7.819644 TCTTGTCTTGGTAATTGATGAACATG 58.180 34.615 0.00 0.00 0.00 3.21
1476 1989 8.408043 TTCTTGTCTTGGTAATTGATGAACAT 57.592 30.769 0.00 0.00 0.00 2.71
1477 1990 7.815840 TTCTTGTCTTGGTAATTGATGAACA 57.184 32.000 0.00 0.00 0.00 3.18
1478 1991 9.528018 TTTTTCTTGTCTTGGTAATTGATGAAC 57.472 29.630 0.00 0.00 0.00 3.18
1533 2046 9.616156 TGTTTTTGTAGTCAATTAGTCTTGGTA 57.384 29.630 0.00 0.00 33.32 3.25
1534 2047 8.514330 TGTTTTTGTAGTCAATTAGTCTTGGT 57.486 30.769 0.00 0.00 33.32 3.67
1535 2048 9.965824 AATGTTTTTGTAGTCAATTAGTCTTGG 57.034 29.630 0.00 0.00 33.32 3.61
1546 2059 9.897744 GATCATTTGAGAATGTTTTTGTAGTCA 57.102 29.630 0.00 0.00 42.61 3.41
1547 2060 9.055248 CGATCATTTGAGAATGTTTTTGTAGTC 57.945 33.333 0.00 0.00 42.61 2.59
1548 2061 8.783093 TCGATCATTTGAGAATGTTTTTGTAGT 58.217 29.630 0.00 0.00 42.61 2.73
1549 2062 9.611284 TTCGATCATTTGAGAATGTTTTTGTAG 57.389 29.630 0.00 0.00 42.61 2.74
1550 2063 9.393249 GTTCGATCATTTGAGAATGTTTTTGTA 57.607 29.630 0.00 0.00 42.61 2.41
1551 2064 7.920151 TGTTCGATCATTTGAGAATGTTTTTGT 59.080 29.630 0.00 0.00 42.61 2.83
1552 2065 8.284557 TGTTCGATCATTTGAGAATGTTTTTG 57.715 30.769 0.00 0.00 42.61 2.44
1553 2066 8.918658 CATGTTCGATCATTTGAGAATGTTTTT 58.081 29.630 6.24 0.00 42.61 1.94
1554 2067 8.084073 ACATGTTCGATCATTTGAGAATGTTTT 58.916 29.630 6.24 0.00 42.61 2.43
1555 2068 7.596494 ACATGTTCGATCATTTGAGAATGTTT 58.404 30.769 6.24 0.00 42.61 2.83
1556 2069 7.149569 ACATGTTCGATCATTTGAGAATGTT 57.850 32.000 6.24 0.00 42.61 2.71
1557 2070 6.748333 ACATGTTCGATCATTTGAGAATGT 57.252 33.333 6.24 0.00 42.61 2.71
1558 2071 7.660735 GAACATGTTCGATCATTTGAGAATG 57.339 36.000 22.09 0.00 43.24 2.67
1573 2086 4.086524 CGCACACATAAAACGAACATGTTC 59.913 41.667 25.68 25.68 36.29 3.18
1574 2087 3.971871 CGCACACATAAAACGAACATGTT 59.028 39.130 11.78 11.78 30.59 2.71
1575 2088 3.550561 CGCACACATAAAACGAACATGT 58.449 40.909 0.00 0.00 33.22 3.21
1576 2089 2.338228 GCGCACACATAAAACGAACATG 59.662 45.455 0.30 0.00 0.00 3.21
1577 2090 2.580589 GCGCACACATAAAACGAACAT 58.419 42.857 0.30 0.00 0.00 2.71
1578 2091 1.657816 CGCGCACACATAAAACGAACA 60.658 47.619 8.75 0.00 0.00 3.18
1579 2092 0.965014 CGCGCACACATAAAACGAAC 59.035 50.000 8.75 0.00 0.00 3.95
1580 2093 0.723129 GCGCGCACACATAAAACGAA 60.723 50.000 29.10 0.00 0.00 3.85
1581 2094 1.154562 GCGCGCACACATAAAACGA 60.155 52.632 29.10 0.00 0.00 3.85
1582 2095 1.120147 GAGCGCGCACACATAAAACG 61.120 55.000 35.10 0.00 0.00 3.60
1583 2096 1.120147 CGAGCGCGCACACATAAAAC 61.120 55.000 35.10 9.42 0.00 2.43
1584 2097 1.131623 CGAGCGCGCACACATAAAA 59.868 52.632 35.10 0.00 0.00 1.52
1585 2098 2.024868 ACGAGCGCGCACACATAAA 61.025 52.632 35.10 0.00 42.48 1.40
1586 2099 2.431771 ACGAGCGCGCACACATAA 60.432 55.556 35.10 0.00 42.48 1.90
1587 2100 3.178592 CACGAGCGCGCACACATA 61.179 61.111 35.10 0.00 42.48 2.29
1595 2108 4.339809 CACACACACACGAGCGCG 62.340 66.667 8.75 8.75 44.79 6.86
1596 2109 3.261951 ACACACACACACGAGCGC 61.262 61.111 0.00 0.00 0.00 5.92
1597 2110 2.164663 ACACACACACACACGAGCG 61.165 57.895 0.00 0.00 0.00 5.03
1598 2111 1.348250 CACACACACACACACGAGC 59.652 57.895 0.00 0.00 0.00 5.03
1599 2112 0.369931 CACACACACACACACACGAG 59.630 55.000 0.00 0.00 0.00 4.18
1600 2113 0.319986 ACACACACACACACACACGA 60.320 50.000 0.00 0.00 0.00 4.35
1601 2114 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1602 2115 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1603 2116 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1604 2117 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1605 2118 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1606 2119 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1607 2120 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1608 2121 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1609 2122 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1610 2123 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1611 2124 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1612 2125 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1613 2126 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1614 2127 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1615 2128 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1616 2129 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1617 2130 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
1618 2131 5.666969 ATAATACACACACACACACACAC 57.333 39.130 0.00 0.00 0.00 3.82
1619 2132 7.118535 GGAATATAATACACACACACACACACA 59.881 37.037 0.00 0.00 0.00 3.72
1620 2133 7.333423 AGGAATATAATACACACACACACACAC 59.667 37.037 0.00 0.00 0.00 3.82
1621 2134 7.333174 CAGGAATATAATACACACACACACACA 59.667 37.037 0.00 0.00 0.00 3.72
1622 2135 7.547722 TCAGGAATATAATACACACACACACAC 59.452 37.037 0.00 0.00 0.00 3.82
1623 2136 7.616313 TCAGGAATATAATACACACACACACA 58.384 34.615 0.00 0.00 0.00 3.72
1624 2137 8.487313 TTCAGGAATATAATACACACACACAC 57.513 34.615 0.00 0.00 0.00 3.82
1653 2166 9.686683 AGCCTGTGATCAACTTTAATTATTAGT 57.313 29.630 0.00 0.00 0.00 2.24
1656 2169 7.761249 GCAAGCCTGTGATCAACTTTAATTATT 59.239 33.333 0.00 0.00 0.00 1.40
1657 2170 7.093814 TGCAAGCCTGTGATCAACTTTAATTAT 60.094 33.333 0.00 0.00 0.00 1.28
1658 2171 6.208402 TGCAAGCCTGTGATCAACTTTAATTA 59.792 34.615 0.00 0.00 0.00 1.40
1659 2172 5.010922 TGCAAGCCTGTGATCAACTTTAATT 59.989 36.000 0.00 0.00 0.00 1.40
1660 2173 4.523943 TGCAAGCCTGTGATCAACTTTAAT 59.476 37.500 0.00 0.00 0.00 1.40
1661 2174 3.888323 TGCAAGCCTGTGATCAACTTTAA 59.112 39.130 0.00 0.00 0.00 1.52
1662 2175 3.485394 TGCAAGCCTGTGATCAACTTTA 58.515 40.909 0.00 0.00 0.00 1.85
1663 2176 2.295349 CTGCAAGCCTGTGATCAACTTT 59.705 45.455 0.00 0.00 0.00 2.66
1664 2177 1.884579 CTGCAAGCCTGTGATCAACTT 59.115 47.619 0.00 0.00 0.00 2.66
1665 2178 1.531423 CTGCAAGCCTGTGATCAACT 58.469 50.000 0.00 0.00 0.00 3.16
1677 2190 8.856439 AGAGATCAAGATATCAAAGCTGCAAGC 61.856 40.741 5.32 0.00 45.31 4.01
1678 2191 6.483974 AGAGATCAAGATATCAAAGCTGCAAG 59.516 38.462 5.32 0.00 31.80 4.01
1679 2192 6.354938 AGAGATCAAGATATCAAAGCTGCAA 58.645 36.000 5.32 0.00 31.80 4.08
1680 2193 5.926663 AGAGATCAAGATATCAAAGCTGCA 58.073 37.500 5.32 0.00 31.80 4.41
1681 2194 8.550710 AATAGAGATCAAGATATCAAAGCTGC 57.449 34.615 5.32 0.00 31.80 5.25
1695 2208 9.948964 TCAACAGAGAAATGAAATAGAGATCAA 57.051 29.630 0.00 0.00 0.00 2.57
1696 2209 9.948964 TTCAACAGAGAAATGAAATAGAGATCA 57.051 29.630 0.00 0.00 30.60 2.92
1699 2212 9.559732 TGTTTCAACAGAGAAATGAAATAGAGA 57.440 29.630 3.80 0.00 42.88 3.10
1705 2218 8.806634 CGAAATTGTTTCAACAGAGAAATGAAA 58.193 29.630 3.66 0.00 40.50 2.69
1706 2219 8.187480 TCGAAATTGTTTCAACAGAGAAATGAA 58.813 29.630 3.66 0.00 40.50 2.57
1707 2220 7.702386 TCGAAATTGTTTCAACAGAGAAATGA 58.298 30.769 3.66 0.00 40.50 2.57
1708 2221 7.912949 TCGAAATTGTTTCAACAGAGAAATG 57.087 32.000 3.66 0.00 40.50 2.32
1710 2223 9.611284 CATATCGAAATTGTTTCAACAGAGAAA 57.389 29.630 0.00 0.00 40.50 2.52
1711 2224 8.998377 TCATATCGAAATTGTTTCAACAGAGAA 58.002 29.630 0.00 0.00 40.50 2.87
1712 2225 8.546597 TCATATCGAAATTGTTTCAACAGAGA 57.453 30.769 0.00 0.00 40.50 3.10
1753 2266 4.083484 CCTGGTAATTGACGAACTTGTTCC 60.083 45.833 7.78 0.00 0.00 3.62
1759 2272 2.635915 TGGTCCTGGTAATTGACGAACT 59.364 45.455 0.00 0.00 0.00 3.01
1838 2351 9.413048 TGACTAGGTTTGTTTTTGTTTTTGTAG 57.587 29.630 0.00 0.00 0.00 2.74
1840 2353 8.664211 TTGACTAGGTTTGTTTTTGTTTTTGT 57.336 26.923 0.00 0.00 0.00 2.83
1847 2360 7.930217 TCTCTCATTGACTAGGTTTGTTTTTG 58.070 34.615 0.00 0.00 0.00 2.44
1848 2361 8.697507 ATCTCTCATTGACTAGGTTTGTTTTT 57.302 30.769 0.00 0.00 0.00 1.94
1853 2366 5.645067 TGCAATCTCTCATTGACTAGGTTTG 59.355 40.000 0.00 0.00 0.00 2.93
1857 2370 5.668471 TCTTGCAATCTCTCATTGACTAGG 58.332 41.667 0.00 0.00 0.00 3.02
1889 2402 6.865834 TTGATGCCCTATTTTTAATGGTGT 57.134 33.333 0.00 0.00 0.00 4.16
1939 2873 0.035820 TTGGTGACCCGGTAATCAGC 60.036 55.000 18.07 18.07 42.41 4.26
1948 2882 3.353836 CGTGCCTTTGGTGACCCG 61.354 66.667 0.00 0.00 0.00 5.28
2012 2946 8.149647 TGCCTCAATAACATTTGTGAAAGAATT 58.850 29.630 0.00 0.00 0.00 2.17
2016 2950 6.869913 ACATGCCTCAATAACATTTGTGAAAG 59.130 34.615 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.