>input_sequence_86732
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-----------------------------------------------------------------------ATGAGCTCC
TCGGACGACACCTGCGGCAAGAAGGCGTCGTGGCCGGAGCTGGTTGGGAAGTCCATCGAGGAGGCCAAGAAGATCATCAT
GAAGGACAGGCCGGATGTGAAGATCATCGAGGTCTTCCCGGTCGGCACCGCCGTGACCGGGGACTTCAGGCCCGACCGTG
TCCGCATCTTCGTCGACACCGTTGCGGAGATCCCCCGCATTGGCTAG---------------------------------
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>chr3A_1_TraesCS3A01G093900
CGAGGCTGATACCATATAAAAGATCGGGTGCATATGCACGTATATATAAGTACATAGGGTAGCCACGTCCTCAACTATAC
AAGGAAGGAGTAGCGCTTGTTGTACAAGAAATGCACATGCATAATATACATCTCAACACTACTGTTCTATTCATGAATTA
TTTAATGAAATTAATCATGAATTTGCGCAAGATTCCAATACAGTTATTTTATCCTTAGATGAAGGAGATAAGATATAGTC
CTTTTCATTGAAATTGAAAGGAGACTACTGGTCGGCCCGTCAAATTCTTAAACTACTCCCTCCGTTTCGATTTTTCGAAT
TACTTGTCACAGGTATAGATATATCTAGATGTATTTTAGTTCTAGATACATCTATTCTATGATGAATAATTTGAAACGGA
GGGAGTACATCTTAAGCGAAGTCTATACACATTATCTCTTTTTTCATATTAATTATTATTCTGAGAGTAAATAAGCTAGT
CATGTCCTCGTCATCGATCTGTTGCTTAGCTATCAGTCAGATCGTCGTTCTGTACATCGATTGCAAGTCAAGTGTGACTT
TGAGACGTATGTTGCACCGCCTGCGTTTTTTTTCTACTCTCATACATGT--ATCAATCTTATCCTCCACTATTTCAGCAG
TACCATCTCGTTATCCATCACGTGGAATTCAGCACTAATAGTCAAATAC-TACAGCCTAACTA---AAGCTAGAGGTTGC
TTGTTTGACCTGACCGCATCTGTGAAGA------TATCGTGTGGCGACGGTGTACCAATCTCGCTGCATATCTTCATCCA
TAAATACAGCACCCGAGCGAG----GCCTCCAAGCGAAATCAAGTAGTACAACACAAAGCTCTCTATCAGGAATTCGATC
AGGATCATCGTCGTCCATCAGTCGAGAC------GTACGTGGTTCAGTTCAACAGGTAAG--------------------
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------------------------------------------------------------TACTCACCATGCATGTCTCA
AATTTTGTGAATCTTTAGCT----GGCTATTTTGATCTCTACAATCTAT-----AGGTCCTCAGTACGAGAATGAGCTCC
TCGGACGACACCTGCGGCAAGAAGGCGTCGTGGCCGGAGCTGGTTGGGAAGTCCATCGAGGAGGCCAAGAAGATCATCAT
GAAGGACAGGCCGGATGTGAAGATCATCGAGGTCTTCCCGGTCGGCACCGCCGTGACCGGGGACTTCAGGCCCGACCGTG
TCCGCATCTTCGTCGACACCGTTGCGGAGATCCCCCGCATTGGCTAGCTTTTGTTGATGCCCCACCGTTTTATGTGTGTG
TGTCTGTA----TGTGTTATGTTCCTGAATAAACCATAGCTAGTGAGTAGTGA------CCATGTATGCATACTACTCCT
AGCTATGTCGGTCGCTCTGTAAGAATTAAAATAATCATTAAACTTTTTTATGGGAAATAATTAAAGTTGATCGCTGGCTT
GCAACTTTGCTATCTTGATCTTTATTTC----------------------------------------------------
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-------------------ATTTCTCTGCTGAAACCATTTCAATAAGAAGAATCTCAAATGATCGAACATGTTCATCAAT
TACCAAGACAAGAAAAATATACTAATTGACAAAAAGTATACTAATTACCAAGACTAATTGACTACAAAAACATTCTCAAA
TGATCGAACATGTTCGTTTTATGTGTGCGCGCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTATATTCCTG
AATAAACTAATAATTAAAGTTGATCACAGGCTTGCAGCTTTGATATCTTGATCTCTATTTCATTTCTCTGTTGAAACAAT
TTCGATATGAAAATACTCAAATGATGGAACAAGTTCGTCAATTACCAGGACCAAAAAATACTAATACTGAATCTAAAAAA
ACCAAATACTAATACTAGTCAATAAGACTCCTACAAAAACAAAAACAAACCTAGTCAATGAGAGATTGCAAGAACTCCCA
CACACCATTAAAAAT-----------------------------------------------------------------
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------------------------------------AGGGCATCAAATAAATAGGCGGGGTAGCGCACATACGCTGATTA
CCGGGTCACCAAAGGCACGGCCAATACTATTAGATTTTAGTTTTTCAGAACATTTTGTTAAAAAAAATTC----------
--TTTCACAAATGTTATTGAGGCATGTTTATGTATTTAATAAAACTTTCAAATGTACTTCAATTTTTTATGTATTTTC-A
AAATGTCTCTGTAATTTAAAGTTATTCCTGTATTTAATAAA-TGTTCATATAATTTAAGACATGTTCACGTATTTTAAAA
ATATTCATCTATTTTAAAAAGTGCTGACTTTTTTAAAAACTAT---
>chrUn_402
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-GGAGTACATCTTAAGCGAAGTCTACATACATTATCTCTTTTTTCATATTAATTATCATTCTGAGAGTGAACAAGCTAGT
CATGTCCCCGTCATTGATCTGTTGCTTAGCTAGCAGTCAGATCGTCGTTCTGTCCATTTATTGCAATTCAAGTGTGACTT
TGAGGCGTATGTTGCACCGCCTGCGTT-TTTTTCTACTCTCGTACATATACATCAACCTTATCCTCCACTATTTCAGCAG
TACCATGTCGTTATCCACCTCATGGAATTCAGTACTA-TAGTCAAA----TACAGCCTAACTAATTAAGCTAGAGGTTGC
TTGTTTGACCTGACCGCATCTGTGAAGATAGTACTATCGTGTGGCGACTGCGCACCAATCTCGCTGCATATCTTCGTCCA
TAAATACAGCCCCCGAGCGAGCCGAGCCTCCAAGCCAAGTCAAGTAGTACAA-ACAAAGCTCTCTATCACGAATTCGATC
AGGATCATCC---TCCATCAGTCGAGGCTCGAGAGTGCGTGCTTCAGTTCAACAGGTGAGCAC-----------------
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------------------------------------------------------------TACTCACCGTGCATGTCTCA
GTTTTGGTGAATCTTTAGCTGGCTGGCTATTTCGATTTCTACTTACAATCTATAAGGTCCTCACTACGAGAATGAGCTCC
TCGGACGACGCCTGCGGCAAGAAGGCGTCGTGGCCGGAGCTGGTTGGCAAGTCCATCGAGGAGGCCAAGAAGATCATCAT
GAAGGACAGGCCGGACGTGAAGATCATCGAGGTCTTCCCGGTCGGCACCGCCGTGACCGAGGACTTCAGGCCCGACCGTG
TCCGCATCTTCGTCGACACCGTCGCGGAGACCCCCCGCATTGGCTAGCTTTGATTCATGCTCCACCGTTTTATGTGTGTG
CGTGTGTTTGTGTGTGTTATATTCCTGAATAAACCATAGCTAGTGACTAGTGAGTAGTGCCATGTATGCATACTACTCCT
AGCTATGTCGATCGCCATGTAAGAATTAATAATTAA--TAAAGTTTTTTATGGGAAATAATTAAGGTTGATCGCTGGCTT
-CAACTTTCATATCGTGATCTTTATTTC----------------------------------------------------
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-------------------ATTT---------------------------------------------------------
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-----------------------------------------------------------------CTCTGTTGAAACCAT
TTCAATATGAAAATACTCAAATGATCAAACATGCTCATCAATTACCAGGAACAAAAAT----------------------
-----ATACTAATACTAGTCAATAAGACTCGTGCAAAAAAGAAAAAAAAACTAGTCAATGAGAGATTGCAAGAACTCCCA
CCCATCATTAAAACTAGGGCATCAAATAATATTTTTTTTGAGAAATCTCGCCACTTTATTATATAATAGCAATGTTTATA
GGTACACGGCGTTGGTCATGGGGTGTTCCCAACCAAACATGCTGACCAACTCCTAAGTTACAAGCGAATTTGGTGAGACT
GAGCCTCGAAATTATGACTTCTACGCTCGAAAACATAAAACAACCAAATTGAAGAAGCTTCTCCGAAGTGTTATTTCATG
TACAATGGCCGAGTGCGCCCCACCTGAACCTTCATTTATATCCTGTACCACTCCTTTGCAATCCGAGGCAATCATCATAT
TTGTCACCTGAAGATCCTCTGCAAGAGCAAGGGCCTCCCTGCACGCTAGTGTCTCCAAGGTAGCGGGATCCGTTATACCA
TGATAAACAGCCGCTGAGGAGCCCAAACAGCCGCTGAGGGCATCAAATAAATAGGCAGGGTAGCGCACATACACTAATTA
CTGGGCCACCAAAGGCAC-GCCAATACTATTAGATTTTAGTTTTACAGCTTTTTTGTTTAAA----------AATTATTT
TGTTTCACAAATGTTATTGAGGCATGTTTATGTATTTAATAAATTTTTCAAACATATTTCAATTTC-TACGTATTTTCAA
AAAAAATGTA------AAAAACTATTCAAGTATTTAAAAAACTGTTCATGGAATTTAAGACGTCTTCACACATTTTAAAA
ATGTACATGTATTTTTAGAAGTGTTCACATATTTTAGTAAAAGTAT
>chr3B_402
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-GGAGTACATCTTAAGCGAAGTCTACATACATTATCTCTTTTTTCATATTAATTATCATTCTGAGAGTGAACAAGCTAGT
CATGTCCCCGTCATTGATCTGTTGCTTAGCTAGCAGTCAGATCGTCGTTCTGTCCATTTATTGCAATTCAAGTGTGACTT
TGAGGCGTATGTTGCACCGCCTGCGTT-TTTTTCTACTCTCGTACATATACATCAACCTTATCCTCCACTATTTCAGCAG
TACCATGTCGTTATCCACCTCATGGAATTCAGTACTA-TAGTCAAA----TACAGCCTAACTAATTAAGCTAGAGGTTGC
TTGTTTGACCTGACCGCATCTGTGAAGATAGTACTATCGTGTGGCGACTGCGCACCAATCTCGCTGCATATCTTCGTCCA
TAAATACAGCCCCCGAGCGAGCCGAGCCTCCAAGCCAAGTCAAGTAGTACAA-ACAAAGCTCTCTATCACGAATTCGATC
AGGATCATCC---TCCATCAGTCGAGGCTCGAGAGTGCGTGCTTCAGTTCAACAGGTGAGCAC-----------------
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------------------------------------------------------------TACTCACCGTGCATGTCTCA
GTTTTGGTGAATCTTTAGCTGGCTGGCTATTTCGATTTCTACTTACAATCTATAAGGTCCTCACTACGAGAATGAGCTCC
TCGGACGACGCCTGCGGCAAGAAGGCGTCGTGGCCGGAGCTGGTTGGCAAGTCCATCGAGGAGGCCAAGAAGATCATCAT
GAAGGACAGGCCGGACGTGAAGATCATCGAGGTCTTCCCGGTCGGCACCGCCGTGACCGAGGACTTCAGGCCCGACCGTG
TCCGCATCTTCGTCGACACCGTCGCGGAGACCCCCCGCATTGGCTAGCTTTGATTCATGCTCCACCGTTTTATGTGTGTG
CGTGTGTTTGTGTGTGTTATATTCCTGAATAAACCATAGCTAGTGACTAGTGAGTAGTGCCATGTATGCATACTACTCCT
AGCTATGTCGATCGCCATGTAAGAATTAATAATTAA--TAAAGTTTTTTATGGGAAATAATTAAGGTTGATCGCTGGCTT
-CAACTTTCATATCGTGATCTTTATTTC----------------------------------------------------
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-------------------ATTT---------------------------------------------------------
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-----------------------------------------------------------------CTCTGTTGAAACCAT
TTCAATATGAAAATACTCAAATGATCAAACATGCTCATCAATTACCAGGAACAAAAAT----------------------
-----ATACTAATACTAGTCAATAAGACTCGTGCAAAAAAGAAAAAAAAACTAGTCAATGAGAGATTGCAAGAACTCCCA
CCCATCATTAAAACTAGGGCATCAAATAATATTTTTTTTGAGAAATCTCGCCACTTTATTATATAATAGCAATGTTCATA
GGTACACGGCGTTGGTCATGGGGTGTTCCCAACCAAACATGCTGACCAACTCCTAAGTTACAAGCGAATTTGGTGAGACT
GAGCCTCGAAATTATGACTTCTACGCTCGAAAACATAAAACAACCAAATTGAAGAAGCTTCTCCGAAGTGTTATTTCATG
TACAATGGCCGAGTGCGCCCCACCTGAACCTTCATTTATATCCTGTACCACTCCTTTGCAATCCGAGGCAATCATCATAT
TTGTCACCTGAAGATCCTCTGCAAGAGCAAGGGCCTCTCTGCACGCTAGTGTCTCCAAGGTAGCGGGATCCGTTATACCA
TGATAAACAGCCGCTGAGGAGCCCAAACAGCCGCTGAGGGAATCAAATAAATAGGCAGGGTAGCGCACATACACTAATTA
CTGGGCCACCAAAGGCAC-GCCAATACTATTAGATTTTAGTTTTACAGCTTTTTTGTTTAAA----------AATTATTT
TGTTTCACAAATGTTATTGAGGCATGTTTATGTATTTAATAAATTTTTCAAACATATTTCAATTTC-TACGTATTTTC-A
AAAAAATGTA------AAAAACTATTCAAGTATTTAAAAAATTGTTCATGGAATTTAAGACGTCTTCACACATTTTAAAA
ATGTACATGTATTTTTAGAAGTGTTCACATATTTTA----------
>chr3D_403
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--GAGTACATCTTAAGCGAAGTCTACATACATTATCTCTTTTTTCGTA-TAATTTTTATGCTGAGAGTGAATAAGCTAGT
CATGTCCCCGTCGTCGATCTGTTGCTTAGCTATCAGTCAGATCGTCGTTCTGTACATCGATTGCAAGTCAAGTGTGACTT
TGAGACGTATGTTGCACCGCCCACGTTTTTTTCCACCCCTCACT-------ATCAACCTTATCCTCCACTATTTCAGCAG
TACCATCTCGTTATCCATCTCATGGAATTTAGTGCTA-TAGTCAAATACGTACAGCCTAACTAATTAAGCTAGAGGTTGC
TTGTTTGACCTGACCGCATCTGTGAAGATA------TCGTGTGGCGACGGTGCACCAATCTCGCTGCATATCTTCATCCA
TAAATACAGCACCCGAGCGAGCC-----TCCGAGCGAAATCAAGTAGTACAACACAAAGCTCTCTATCAGGAATTCGATC
AGGATCGTCGTTCACCAGTCT--GAGGCTCGAGAGTGCGTGGTTCACTTCAACAGGTAAGTACTCCCTCCGTTCCTAAAT
ATAAGTCTTTGAAGAGATTCTACTATGAACCACCTACGGAGCAAAATGAGTGAATCTATACTCTAAAATGCATCTAGATA
CATCCGTATGTGGTCCATAGTAAAATCTCTACAAAGACTTATATTTAGGAACGGAGGGAGTACTCACCATGCATGTCTCA
ATTTTG-TGAATCTTTAGC----TGGCTATTTTGATTTCTACTTACAATCTATAAGGTCCTCAGTACGAGAATGAGCTCC
TCGGACGACACCTGCGGCAAGAAGGCGTCGTGGCCGGAGCTGGTTGGGAAGTCCATCGAGGAGGCCAAGAAGACCATCAT
GAAGGACAGGCCGGACGTGAAGAACATCGAGGTCTTCCCGGTCGGCACACCGGTGACCGGGGACTTCAGGCCCGACCGTG
TCCGCATCTTCGTCGACACCGTTGCGGAGACCCCCCGCATTGGCTAACTTTGATTGATGCTCCATCG-TTTATGTGTGTG
----------TGTGTGTTATATTCCAGAATAAACCATAGCTAGTGAGTAGTG------GCCATGTATGCATACTGCTCCT
AGCTATGTCGGTCGATATGTAAGATTTAATAATTAA------GTTTTTTATGGGAAATAATTAAAGTTGATCCCAGGCTT
GCGACTTTGATATCTTGATCTTTATTTCGCTTCTCTCTTGAAACCATTTCAATACGAAAAATCTCAAATGATCGAACATG
TTTATCAATTACCAAGATAAGAAAAATATACTAATTGACAAAATATAGACTAATTACCCAGACTAATTGACTAAAAAAAT
CTCAAATGATTGAACATTGTTCGTTTCATGTGTGTGTGTGTGTGTGTGTTATATTCCTGAATAAACCATAGCTAGTGAGG
GTGTATGTACAATACTCCTAGCTATGTCGATCGCCATGTACGAGTTAATAATTAAAGTTGATCGCAGGCTTGCTGCCTTG
ATATCTTGATCTTAATTTCATTT---------------------------------------------------------
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-----------------------------------------------------------------CTCTGTTGAAACAAT
TTCGATACGAAAAAACTCAAATGATCGAACATGTTCATCAATTACCAGGACCAAAAAT----------------------
-----ATACCAATACTAGTCAATAAGCCCCGTGCAAAAAAGAAAAAAA--CTAGTCAGTGAGACATTGCAAAAACTCCCA
CCCACCATTAAAAATAGGGCATCAAATAA---------------------------------------------------
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--------------------------------------------------ATAGGTGGGGTAGCGCACATACTCTGATTA
CTGGGCCACCAAAGGCACGGCCAATACTATTAGATTTTAGTTTTTCAGAATTTTTGTTTAAAAAATATTTTGAAATATTT
TGTTTCACAAATTTTACTGAGGCATGTTTATATATTTAATAATTTTTTCAAATATATTACAATTTTACGTACTTTAGATT
TTTTA----TGAAATTAAAAATTATTCACGTATTTAAAAAA-AATTCATGCCATTTAAGATATCTTCACGCATTTAAAAA
ATGTTCATCTATTTTGAAAAGTGTTCACGTATTTTAATAAA-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------------------------S-S----------------------------------------S-----------
-------S------------------------------------------------------------------------
-----------------------------------------------S--------S-----------------------
-------------------S-S----------S----S------------------------------------------
----------------------------------------------------S---------------------------
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-----------SS-------------S---------S-------------------------------------------
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-S---S------------------------------S-----SSS-S---------------------------------
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---------------S----------------------------------------------------------------
------------------------------S--------------------SS-------S-------------------
S--S---S------------S-----------------------------------------------------------
----------------S------------S-SSSSSSS----S-------------------------------------
---------S----------------------------------------------------------------------
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-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-------------------------S-----S----S--------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------------------------S-S------SS----S---S------------------------------
-S------------------------------------------------------------------------------
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------------------------------------------------------------------------S-------
-S---S--------------------------------------------SS---SS--------S---S----------
-------------------------------------------SS--------S--S---------S-------------
----SSSSS--S----S---S------SS--------S-----------SS------------S------S---------
--S------------S-------S-S--S-S---S--S-SS-S---
>forward_71
---------------------------------------------------ACATAGGGTAGCCACGTCCT---------
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>reverse_2873
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------------------------------------------------------------------------GCTGATTA
CCGGGTCACCAA--------------------------------------------------------------------
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----------------------------------------------
