Multiple sequence alignment - TraesCS3A01G090900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G090900 chr3A 100.000 3412 0 0 1 3412 57718731 57715320 0.000000e+00 6301.0
1 TraesCS3A01G090900 chr3A 93.641 1887 69 18 600 2478 57481164 57483007 0.000000e+00 2772.0
2 TraesCS3A01G090900 chr3A 75.880 568 53 36 2550 3050 57483040 57483590 2.670000e-51 213.0
3 TraesCS3A01G090900 chr3A 85.455 110 10 2 3055 3158 57483681 57483790 3.600000e-20 110.0
4 TraesCS3A01G090900 chr3B 83.692 1441 108 46 1299 2698 71555065 71553711 0.000000e+00 1242.0
5 TraesCS3A01G090900 chr3B 89.605 481 29 10 2722 3181 71547298 71546818 2.930000e-165 592.0
6 TraesCS3A01G090900 chr3B 92.949 312 17 3 913 1224 71555377 71555071 1.870000e-122 449.0
7 TraesCS3A01G090900 chr3B 89.500 200 15 4 600 798 71555931 71555737 7.310000e-62 248.0
8 TraesCS3A01G090900 chr3B 98.113 53 1 0 848 900 71555594 71555542 3.630000e-15 93.5
9 TraesCS3A01G090900 chr3D 80.602 1263 86 43 1231 2437 45922573 45923732 0.000000e+00 828.0
10 TraesCS3A01G090900 chr3D 85.968 506 37 17 1465 1947 45954584 45954090 8.450000e-141 510.0
11 TraesCS3A01G090900 chr3D 92.038 314 15 5 595 900 45955247 45954936 1.880000e-117 433.0
12 TraesCS3A01G090900 chr3D 83.268 508 41 16 2695 3181 45954033 45953549 8.750000e-116 427.0
13 TraesCS3A01G090900 chr3D 96.016 251 10 0 975 1225 45954876 45954626 3.170000e-110 409.0
14 TraesCS3A01G090900 chr3D 91.250 240 16 5 987 1225 45922215 45922450 4.250000e-84 322.0
15 TraesCS3A01G090900 chr3D 92.462 199 11 2 600 798 45921650 45921844 7.210000e-72 281.0
16 TraesCS3A01G090900 chr3D 100.000 56 0 0 848 903 45921987 45922042 1.670000e-18 104.0
17 TraesCS3A01G090900 chr3D 85.859 99 10 4 343 441 45956313 45956219 6.020000e-18 102.0
18 TraesCS3A01G090900 chr5A 97.159 176 5 0 20 195 604907919 604908094 7.160000e-77 298.0
19 TraesCS3A01G090900 chr5A 97.159 176 5 0 20 195 604941961 604942136 7.160000e-77 298.0
20 TraesCS3A01G090900 chr4A 96.552 174 6 0 19 192 133841993 133842166 4.310000e-74 289.0
21 TraesCS3A01G090900 chr2B 95.556 180 6 2 19 197 763446654 763446832 1.550000e-73 287.0
22 TraesCS3A01G090900 chr2B 94.505 182 8 2 19 199 701671336 701671516 2.590000e-71 279.0
23 TraesCS3A01G090900 chr2A 94.565 184 10 0 12 195 579582597 579582414 5.570000e-73 285.0
24 TraesCS3A01G090900 chr4B 94.505 182 8 2 19 199 328009111 328009291 2.590000e-71 279.0
25 TraesCS3A01G090900 chr2D 94.054 185 9 2 19 202 610329846 610329663 2.590000e-71 279.0
26 TraesCS3A01G090900 chr1B 92.857 196 9 5 19 212 25246232 25246040 2.590000e-71 279.0
27 TraesCS3A01G090900 chr7B 81.183 186 16 11 2131 2300 641681243 641681425 7.680000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G090900 chr3A 57715320 57718731 3411 True 6301.000000 6301 100.0000 1 3412 1 chr3A.!!$R1 3411
1 TraesCS3A01G090900 chr3A 57481164 57483790 2626 False 1031.666667 2772 84.9920 600 3158 3 chr3A.!!$F1 2558
2 TraesCS3A01G090900 chr3B 71553711 71555931 2220 True 508.125000 1242 91.0635 600 2698 4 chr3B.!!$R2 2098
3 TraesCS3A01G090900 chr3D 45921650 45923732 2082 False 383.750000 828 91.0785 600 2437 4 chr3D.!!$F1 1837
4 TraesCS3A01G090900 chr3D 45953549 45956313 2764 True 376.200000 510 88.6298 343 3181 5 chr3D.!!$R1 2838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 912 0.030369 GCTGCGCCGTGTAGTAGTAT 59.970 55.0 4.18 0.0 32.1 2.12 F
593 914 0.305617 TGCGCCGTGTAGTAGTATCG 59.694 55.0 4.18 0.0 0.0 2.92 F
1970 3272 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.0 0.00 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 3268 0.179192 CTGCACACACACACACACAC 60.179 55.0 0.0 0.0 0.0 3.82 R
2065 3374 0.311790 AATTTGCGTGTGTGCCTCTG 59.688 50.0 0.0 0.0 0.0 3.35 R
3199 4719 0.399519 GGGGAATCGAGGGAGGGTTA 60.400 60.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.806949 ATTGGGCACTTTTCTAGGACA 57.193 42.857 0.00 0.00 0.00 4.02
21 22 2.859165 TGGGCACTTTTCTAGGACAG 57.141 50.000 0.00 0.00 0.00 3.51
22 23 2.054799 TGGGCACTTTTCTAGGACAGT 58.945 47.619 0.00 0.00 0.00 3.55
23 24 2.441750 TGGGCACTTTTCTAGGACAGTT 59.558 45.455 0.00 0.00 0.00 3.16
24 25 3.117663 TGGGCACTTTTCTAGGACAGTTT 60.118 43.478 0.00 0.00 0.00 2.66
25 26 3.889538 GGGCACTTTTCTAGGACAGTTTT 59.110 43.478 0.00 0.00 0.00 2.43
26 27 4.261614 GGGCACTTTTCTAGGACAGTTTTG 60.262 45.833 0.00 0.00 0.00 2.44
27 28 4.290969 GCACTTTTCTAGGACAGTTTTGC 58.709 43.478 0.00 0.00 0.00 3.68
28 29 4.036852 GCACTTTTCTAGGACAGTTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
29 30 5.238650 GCACTTTTCTAGGACAGTTTTGCTA 59.761 40.000 0.00 0.00 0.00 3.49
30 31 6.566753 GCACTTTTCTAGGACAGTTTTGCTAG 60.567 42.308 0.00 0.00 0.00 3.42
31 32 6.706270 CACTTTTCTAGGACAGTTTTGCTAGA 59.294 38.462 0.00 0.00 29.55 2.43
32 33 7.226720 CACTTTTCTAGGACAGTTTTGCTAGAA 59.773 37.037 9.31 9.31 35.77 2.10
33 34 7.226918 ACTTTTCTAGGACAGTTTTGCTAGAAC 59.773 37.037 12.11 0.00 36.54 3.01
34 35 6.420913 TTCTAGGACAGTTTTGCTAGAACT 57.579 37.500 9.31 0.00 34.17 3.01
35 36 6.026947 TCTAGGACAGTTTTGCTAGAACTC 57.973 41.667 0.00 0.00 35.26 3.01
36 37 4.689612 AGGACAGTTTTGCTAGAACTCA 57.310 40.909 0.00 0.00 35.26 3.41
37 38 5.234466 AGGACAGTTTTGCTAGAACTCAT 57.766 39.130 0.00 0.00 35.26 2.90
38 39 5.241662 AGGACAGTTTTGCTAGAACTCATC 58.758 41.667 0.00 0.00 35.26 2.92
39 40 5.012561 AGGACAGTTTTGCTAGAACTCATCT 59.987 40.000 0.00 0.00 42.48 2.90
40 41 6.211584 AGGACAGTTTTGCTAGAACTCATCTA 59.788 38.462 0.00 0.00 39.71 1.98
69 70 9.699410 TGAGATATAATTTGGTTTCATTCACCT 57.301 29.630 0.00 0.00 35.07 4.00
79 80 8.698973 TTGGTTTCATTCACCTTTTATAGTCA 57.301 30.769 0.00 0.00 35.07 3.41
80 81 8.877864 TGGTTTCATTCACCTTTTATAGTCAT 57.122 30.769 0.00 0.00 35.07 3.06
81 82 9.308000 TGGTTTCATTCACCTTTTATAGTCATT 57.692 29.630 0.00 0.00 35.07 2.57
82 83 9.573133 GGTTTCATTCACCTTTTATAGTCATTG 57.427 33.333 0.00 0.00 0.00 2.82
83 84 9.573133 GTTTCATTCACCTTTTATAGTCATTGG 57.427 33.333 0.00 0.00 0.00 3.16
84 85 9.527157 TTTCATTCACCTTTTATAGTCATTGGA 57.473 29.630 0.00 0.00 0.00 3.53
85 86 9.699410 TTCATTCACCTTTTATAGTCATTGGAT 57.301 29.630 0.00 0.00 0.00 3.41
86 87 9.123902 TCATTCACCTTTTATAGTCATTGGATG 57.876 33.333 0.00 0.00 0.00 3.51
87 88 8.906867 CATTCACCTTTTATAGTCATTGGATGT 58.093 33.333 0.00 0.00 0.00 3.06
88 89 7.864108 TCACCTTTTATAGTCATTGGATGTG 57.136 36.000 0.00 0.00 0.00 3.21
89 90 7.629157 TCACCTTTTATAGTCATTGGATGTGA 58.371 34.615 0.00 0.00 0.00 3.58
90 91 8.274322 TCACCTTTTATAGTCATTGGATGTGAT 58.726 33.333 0.00 0.00 0.00 3.06
91 92 8.347771 CACCTTTTATAGTCATTGGATGTGATG 58.652 37.037 0.00 0.00 0.00 3.07
92 93 8.055181 ACCTTTTATAGTCATTGGATGTGATGT 58.945 33.333 0.00 0.00 0.00 3.06
93 94 8.906867 CCTTTTATAGTCATTGGATGTGATGTT 58.093 33.333 0.00 0.00 0.00 2.71
101 102 9.281371 AGTCATTGGATGTGATGTTATAAGATG 57.719 33.333 0.00 0.00 0.00 2.90
102 103 8.019669 GTCATTGGATGTGATGTTATAAGATGC 58.980 37.037 0.00 0.00 0.00 3.91
103 104 6.544038 TTGGATGTGATGTTATAAGATGCG 57.456 37.500 0.00 0.00 0.00 4.73
104 105 5.610398 TGGATGTGATGTTATAAGATGCGT 58.390 37.500 0.00 0.00 0.00 5.24
105 106 5.466393 TGGATGTGATGTTATAAGATGCGTG 59.534 40.000 0.00 0.00 0.00 5.34
106 107 5.466728 GGATGTGATGTTATAAGATGCGTGT 59.533 40.000 0.00 0.00 0.00 4.49
107 108 5.717038 TGTGATGTTATAAGATGCGTGTG 57.283 39.130 0.00 0.00 0.00 3.82
108 109 5.175127 TGTGATGTTATAAGATGCGTGTGT 58.825 37.500 0.00 0.00 0.00 3.72
109 110 5.063312 TGTGATGTTATAAGATGCGTGTGTG 59.937 40.000 0.00 0.00 0.00 3.82
110 111 4.033932 TGATGTTATAAGATGCGTGTGTGC 59.966 41.667 0.00 0.00 0.00 4.57
111 112 3.595173 TGTTATAAGATGCGTGTGTGCT 58.405 40.909 0.00 0.00 35.36 4.40
112 113 3.370672 TGTTATAAGATGCGTGTGTGCTG 59.629 43.478 0.00 0.00 35.36 4.41
113 114 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
114 115 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
115 116 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
116 117 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
117 118 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
118 119 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
119 120 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
120 121 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
121 122 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
122 123 0.531090 GTGTGTGCTGACGTGGGTTA 60.531 55.000 0.00 0.00 0.00 2.85
123 124 0.394938 TGTGTGCTGACGTGGGTTAT 59.605 50.000 0.00 0.00 0.00 1.89
124 125 1.202710 TGTGTGCTGACGTGGGTTATT 60.203 47.619 0.00 0.00 0.00 1.40
125 126 1.877443 GTGTGCTGACGTGGGTTATTT 59.123 47.619 0.00 0.00 0.00 1.40
126 127 2.292292 GTGTGCTGACGTGGGTTATTTT 59.708 45.455 0.00 0.00 0.00 1.82
127 128 2.952978 TGTGCTGACGTGGGTTATTTTT 59.047 40.909 0.00 0.00 0.00 1.94
128 129 3.243234 TGTGCTGACGTGGGTTATTTTTG 60.243 43.478 0.00 0.00 0.00 2.44
129 130 2.952978 TGCTGACGTGGGTTATTTTTGT 59.047 40.909 0.00 0.00 0.00 2.83
130 131 3.381908 TGCTGACGTGGGTTATTTTTGTT 59.618 39.130 0.00 0.00 0.00 2.83
131 132 3.978855 GCTGACGTGGGTTATTTTTGTTC 59.021 43.478 0.00 0.00 0.00 3.18
132 133 4.261447 GCTGACGTGGGTTATTTTTGTTCT 60.261 41.667 0.00 0.00 0.00 3.01
133 134 5.735070 GCTGACGTGGGTTATTTTTGTTCTT 60.735 40.000 0.00 0.00 0.00 2.52
134 135 5.583495 TGACGTGGGTTATTTTTGTTCTTG 58.417 37.500 0.00 0.00 0.00 3.02
135 136 5.357314 TGACGTGGGTTATTTTTGTTCTTGA 59.643 36.000 0.00 0.00 0.00 3.02
136 137 6.039941 TGACGTGGGTTATTTTTGTTCTTGAT 59.960 34.615 0.00 0.00 0.00 2.57
137 138 6.811954 ACGTGGGTTATTTTTGTTCTTGATT 58.188 32.000 0.00 0.00 0.00 2.57
138 139 7.269316 ACGTGGGTTATTTTTGTTCTTGATTT 58.731 30.769 0.00 0.00 0.00 2.17
139 140 7.766738 ACGTGGGTTATTTTTGTTCTTGATTTT 59.233 29.630 0.00 0.00 0.00 1.82
140 141 8.272866 CGTGGGTTATTTTTGTTCTTGATTTTC 58.727 33.333 0.00 0.00 0.00 2.29
141 142 9.103861 GTGGGTTATTTTTGTTCTTGATTTTCA 57.896 29.630 0.00 0.00 0.00 2.69
142 143 9.672673 TGGGTTATTTTTGTTCTTGATTTTCAA 57.327 25.926 0.00 0.00 34.79 2.69
155 156 6.957920 TTGATTTTCAAGTGAATGAGACCA 57.042 33.333 0.00 0.00 31.83 4.02
156 157 6.957920 TGATTTTCAAGTGAATGAGACCAA 57.042 33.333 0.00 0.00 33.54 3.67
157 158 7.345422 TGATTTTCAAGTGAATGAGACCAAA 57.655 32.000 0.00 0.00 33.54 3.28
158 159 7.954835 TGATTTTCAAGTGAATGAGACCAAAT 58.045 30.769 0.00 0.00 33.54 2.32
159 160 8.423349 TGATTTTCAAGTGAATGAGACCAAATT 58.577 29.630 0.00 0.00 33.54 1.82
160 161 9.912634 GATTTTCAAGTGAATGAGACCAAATTA 57.087 29.630 0.00 0.00 33.54 1.40
190 191 8.466617 TCATTTAGATGAGTTCTAGGTACTCC 57.533 38.462 17.72 8.04 41.02 3.85
191 192 7.506261 TCATTTAGATGAGTTCTAGGTACTCCC 59.494 40.741 17.72 12.05 41.02 4.30
192 193 7.507616 CATTTAGATGAGTTCTAGGTACTCCCT 59.492 40.741 17.72 16.34 41.02 4.20
193 194 5.475398 AGATGAGTTCTAGGTACTCCCTT 57.525 43.478 17.72 7.62 42.73 3.95
194 195 5.844601 AGATGAGTTCTAGGTACTCCCTTT 58.155 41.667 17.72 5.87 42.73 3.11
195 196 6.265304 AGATGAGTTCTAGGTACTCCCTTTT 58.735 40.000 17.72 4.15 42.73 2.27
196 197 6.731448 AGATGAGTTCTAGGTACTCCCTTTTT 59.269 38.462 17.72 2.92 42.73 1.94
197 198 7.899709 AGATGAGTTCTAGGTACTCCCTTTTTA 59.100 37.037 17.72 4.06 42.73 1.52
198 199 7.860649 TGAGTTCTAGGTACTCCCTTTTTAA 57.139 36.000 17.72 1.16 42.73 1.52
199 200 7.904205 TGAGTTCTAGGTACTCCCTTTTTAAG 58.096 38.462 17.72 0.00 42.73 1.85
200 201 7.731688 TGAGTTCTAGGTACTCCCTTTTTAAGA 59.268 37.037 17.72 0.12 42.73 2.10
201 202 8.682297 AGTTCTAGGTACTCCCTTTTTAAGAT 57.318 34.615 0.00 0.00 42.73 2.40
202 203 8.541234 AGTTCTAGGTACTCCCTTTTTAAGATG 58.459 37.037 0.00 0.00 42.73 2.90
203 204 7.433537 TCTAGGTACTCCCTTTTTAAGATGG 57.566 40.000 0.00 0.00 42.73 3.51
204 205 6.964086 TCTAGGTACTCCCTTTTTAAGATGGT 59.036 38.462 0.00 0.00 42.73 3.55
205 206 8.124430 TCTAGGTACTCCCTTTTTAAGATGGTA 58.876 37.037 0.00 0.00 42.73 3.25
206 207 7.578458 AGGTACTCCCTTTTTAAGATGGTAA 57.422 36.000 0.00 0.00 42.73 2.85
207 208 7.992295 AGGTACTCCCTTTTTAAGATGGTAAA 58.008 34.615 0.00 0.00 42.73 2.01
208 209 8.621073 AGGTACTCCCTTTTTAAGATGGTAAAT 58.379 33.333 0.00 0.00 42.73 1.40
209 210 9.251440 GGTACTCCCTTTTTAAGATGGTAAATT 57.749 33.333 0.00 0.00 0.00 1.82
247 248 8.814038 AAAAATAGTCATGGAGTGATAGCTTT 57.186 30.769 0.00 0.00 39.48 3.51
248 249 8.814038 AAAATAGTCATGGAGTGATAGCTTTT 57.186 30.769 0.00 0.00 39.48 2.27
249 250 7.798596 AATAGTCATGGAGTGATAGCTTTTG 57.201 36.000 0.00 0.00 39.48 2.44
250 251 5.426689 AGTCATGGAGTGATAGCTTTTGA 57.573 39.130 0.00 0.00 39.48 2.69
251 252 5.809001 AGTCATGGAGTGATAGCTTTTGAA 58.191 37.500 0.00 0.00 39.48 2.69
252 253 6.421485 AGTCATGGAGTGATAGCTTTTGAAT 58.579 36.000 0.00 0.00 39.48 2.57
253 254 6.888632 AGTCATGGAGTGATAGCTTTTGAATT 59.111 34.615 0.00 0.00 39.48 2.17
254 255 8.049117 AGTCATGGAGTGATAGCTTTTGAATTA 58.951 33.333 0.00 0.00 39.48 1.40
255 256 8.844244 GTCATGGAGTGATAGCTTTTGAATTAT 58.156 33.333 0.00 0.00 39.48 1.28
256 257 9.412460 TCATGGAGTGATAGCTTTTGAATTATT 57.588 29.630 0.00 0.00 0.00 1.40
257 258 9.674824 CATGGAGTGATAGCTTTTGAATTATTC 57.325 33.333 0.00 0.00 0.00 1.75
258 259 9.638176 ATGGAGTGATAGCTTTTGAATTATTCT 57.362 29.630 6.50 0.00 0.00 2.40
259 260 9.466497 TGGAGTGATAGCTTTTGAATTATTCTT 57.534 29.630 6.50 0.00 0.00 2.52
280 281 7.958112 TCTTTACAAAGTGTTAGTTTTTCGC 57.042 32.000 1.86 0.00 37.31 4.70
281 282 6.968335 TCTTTACAAAGTGTTAGTTTTTCGCC 59.032 34.615 1.86 0.00 37.31 5.54
282 283 4.705337 ACAAAGTGTTAGTTTTTCGCCA 57.295 36.364 0.00 0.00 0.00 5.69
283 284 4.668289 ACAAAGTGTTAGTTTTTCGCCAG 58.332 39.130 0.00 0.00 0.00 4.85
284 285 3.982576 AAGTGTTAGTTTTTCGCCAGG 57.017 42.857 0.00 0.00 0.00 4.45
285 286 2.227194 AGTGTTAGTTTTTCGCCAGGG 58.773 47.619 0.00 0.00 0.00 4.45
286 287 1.951602 GTGTTAGTTTTTCGCCAGGGT 59.048 47.619 0.00 0.00 0.00 4.34
287 288 1.950909 TGTTAGTTTTTCGCCAGGGTG 59.049 47.619 0.00 0.00 0.00 4.61
288 289 2.223745 GTTAGTTTTTCGCCAGGGTGA 58.776 47.619 0.00 0.00 0.00 4.02
289 290 2.178912 TAGTTTTTCGCCAGGGTGAG 57.821 50.000 1.39 0.00 35.94 3.51
290 291 0.182775 AGTTTTTCGCCAGGGTGAGT 59.817 50.000 1.39 0.00 35.94 3.41
291 292 0.591659 GTTTTTCGCCAGGGTGAGTC 59.408 55.000 1.39 0.00 35.94 3.36
292 293 0.882927 TTTTTCGCCAGGGTGAGTCG 60.883 55.000 1.39 0.00 35.94 4.18
293 294 1.750341 TTTTCGCCAGGGTGAGTCGA 61.750 55.000 1.39 0.00 35.94 4.20
294 295 1.750341 TTTCGCCAGGGTGAGTCGAA 61.750 55.000 1.39 0.00 37.38 3.71
295 296 1.541310 TTCGCCAGGGTGAGTCGAAT 61.541 55.000 1.39 0.00 34.75 3.34
296 297 1.079127 CGCCAGGGTGAGTCGAATT 60.079 57.895 0.00 0.00 0.00 2.17
297 298 1.361668 CGCCAGGGTGAGTCGAATTG 61.362 60.000 0.00 0.00 0.00 2.32
298 299 0.321653 GCCAGGGTGAGTCGAATTGT 60.322 55.000 0.00 0.00 0.00 2.71
299 300 1.442769 CCAGGGTGAGTCGAATTGTG 58.557 55.000 0.00 0.00 0.00 3.33
300 301 1.442769 CAGGGTGAGTCGAATTGTGG 58.557 55.000 0.00 0.00 0.00 4.17
301 302 0.324943 AGGGTGAGTCGAATTGTGGG 59.675 55.000 0.00 0.00 0.00 4.61
302 303 1.305930 GGGTGAGTCGAATTGTGGGC 61.306 60.000 0.00 0.00 0.00 5.36
303 304 0.605319 GGTGAGTCGAATTGTGGGCA 60.605 55.000 0.00 0.00 0.00 5.36
304 305 1.453155 GTGAGTCGAATTGTGGGCAT 58.547 50.000 0.00 0.00 0.00 4.40
305 306 1.131126 GTGAGTCGAATTGTGGGCATG 59.869 52.381 0.00 0.00 0.00 4.06
306 307 1.003003 TGAGTCGAATTGTGGGCATGA 59.997 47.619 0.00 0.00 0.00 3.07
307 308 2.292267 GAGTCGAATTGTGGGCATGAT 58.708 47.619 0.00 0.00 0.00 2.45
308 309 2.019249 AGTCGAATTGTGGGCATGATG 58.981 47.619 0.00 0.00 0.00 3.07
309 310 2.016318 GTCGAATTGTGGGCATGATGA 58.984 47.619 0.00 0.00 0.00 2.92
310 311 2.423185 GTCGAATTGTGGGCATGATGAA 59.577 45.455 0.00 0.00 0.00 2.57
311 312 2.684374 TCGAATTGTGGGCATGATGAAG 59.316 45.455 0.00 0.00 0.00 3.02
312 313 2.223641 CGAATTGTGGGCATGATGAAGG 60.224 50.000 0.00 0.00 0.00 3.46
313 314 1.117150 ATTGTGGGCATGATGAAGGC 58.883 50.000 0.00 0.00 0.00 4.35
314 315 0.251698 TTGTGGGCATGATGAAGGCA 60.252 50.000 0.00 0.00 0.00 4.75
315 316 0.032912 TGTGGGCATGATGAAGGCAT 60.033 50.000 0.00 0.00 37.47 4.40
316 317 1.117150 GTGGGCATGATGAAGGCATT 58.883 50.000 0.00 0.00 34.11 3.56
317 318 1.116308 TGGGCATGATGAAGGCATTG 58.884 50.000 0.00 0.00 34.11 2.82
318 319 1.117150 GGGCATGATGAAGGCATTGT 58.883 50.000 0.00 0.00 34.11 2.71
319 320 1.483415 GGGCATGATGAAGGCATTGTT 59.517 47.619 0.00 0.00 34.11 2.83
320 321 2.694628 GGGCATGATGAAGGCATTGTTA 59.305 45.455 0.00 0.00 34.11 2.41
321 322 3.243636 GGGCATGATGAAGGCATTGTTAG 60.244 47.826 0.00 0.00 34.11 2.34
322 323 3.633525 GGCATGATGAAGGCATTGTTAGA 59.366 43.478 0.00 0.00 34.11 2.10
323 324 4.261489 GGCATGATGAAGGCATTGTTAGAG 60.261 45.833 0.00 0.00 34.11 2.43
324 325 4.577693 GCATGATGAAGGCATTGTTAGAGA 59.422 41.667 0.00 0.00 34.11 3.10
325 326 5.241064 GCATGATGAAGGCATTGTTAGAGAT 59.759 40.000 0.00 0.00 34.11 2.75
326 327 6.429078 GCATGATGAAGGCATTGTTAGAGATA 59.571 38.462 0.00 0.00 34.11 1.98
327 328 7.361031 GCATGATGAAGGCATTGTTAGAGATAG 60.361 40.741 0.00 0.00 34.11 2.08
328 329 7.365497 TGATGAAGGCATTGTTAGAGATAGA 57.635 36.000 0.00 0.00 34.11 1.98
329 330 7.440198 TGATGAAGGCATTGTTAGAGATAGAG 58.560 38.462 0.00 0.00 34.11 2.43
330 331 6.798427 TGAAGGCATTGTTAGAGATAGAGT 57.202 37.500 0.00 0.00 0.00 3.24
331 332 6.577103 TGAAGGCATTGTTAGAGATAGAGTG 58.423 40.000 0.00 0.00 0.00 3.51
332 333 5.543507 AGGCATTGTTAGAGATAGAGTGG 57.456 43.478 0.00 0.00 0.00 4.00
333 334 5.211973 AGGCATTGTTAGAGATAGAGTGGA 58.788 41.667 0.00 0.00 0.00 4.02
334 335 5.304101 AGGCATTGTTAGAGATAGAGTGGAG 59.696 44.000 0.00 0.00 0.00 3.86
335 336 5.510520 GGCATTGTTAGAGATAGAGTGGAGG 60.511 48.000 0.00 0.00 0.00 4.30
336 337 5.303078 GCATTGTTAGAGATAGAGTGGAGGA 59.697 44.000 0.00 0.00 0.00 3.71
337 338 6.516527 GCATTGTTAGAGATAGAGTGGAGGAG 60.517 46.154 0.00 0.00 0.00 3.69
338 339 4.465886 TGTTAGAGATAGAGTGGAGGAGC 58.534 47.826 0.00 0.00 0.00 4.70
339 340 4.079730 TGTTAGAGATAGAGTGGAGGAGCA 60.080 45.833 0.00 0.00 0.00 4.26
340 341 3.678965 AGAGATAGAGTGGAGGAGCAA 57.321 47.619 0.00 0.00 0.00 3.91
341 342 4.197559 AGAGATAGAGTGGAGGAGCAAT 57.802 45.455 0.00 0.00 0.00 3.56
346 347 0.463474 GAGTGGAGGAGCAATGGAGC 60.463 60.000 0.00 0.00 0.00 4.70
367 368 2.423898 GCATGCATGGCTTGGAGCT 61.424 57.895 27.34 0.00 41.99 4.09
368 369 1.956629 GCATGCATGGCTTGGAGCTT 61.957 55.000 27.34 0.00 41.99 3.74
369 370 1.395635 CATGCATGGCTTGGAGCTTA 58.604 50.000 19.40 0.00 41.99 3.09
371 372 0.394762 TGCATGGCTTGGAGCTTAGG 60.395 55.000 2.33 0.00 41.99 2.69
373 374 1.683011 GCATGGCTTGGAGCTTAGGAA 60.683 52.381 2.33 0.00 41.99 3.36
377 378 0.744771 GCTTGGAGCTTAGGAACCCG 60.745 60.000 0.00 0.00 38.45 5.28
378 379 0.744771 CTTGGAGCTTAGGAACCCGC 60.745 60.000 0.00 0.00 0.00 6.13
380 381 1.271840 TGGAGCTTAGGAACCCGCAT 61.272 55.000 0.00 0.00 0.00 4.73
381 382 0.533085 GGAGCTTAGGAACCCGCATC 60.533 60.000 0.00 0.00 0.00 3.91
382 383 0.533085 GAGCTTAGGAACCCGCATCC 60.533 60.000 0.00 0.00 37.22 3.51
384 385 0.533085 GCTTAGGAACCCGCATCCTC 60.533 60.000 5.30 0.00 44.01 3.71
385 386 0.106894 CTTAGGAACCCGCATCCTCC 59.893 60.000 5.30 0.00 44.01 4.30
404 405 0.840729 CGACAGATAGACGCGCTTTC 59.159 55.000 5.73 9.35 0.00 2.62
406 407 0.818296 ACAGATAGACGCGCTTTCCT 59.182 50.000 5.73 0.00 0.00 3.36
415 416 2.459934 ACGCGCTTTCCTTTTTCTTTG 58.540 42.857 5.73 0.00 0.00 2.77
419 420 3.309682 GCGCTTTCCTTTTTCTTTGCTTT 59.690 39.130 0.00 0.00 0.00 3.51
426 427 4.507388 TCCTTTTTCTTTGCTTTGCGAATG 59.493 37.500 0.00 0.00 31.00 2.67
441 442 1.190323 CGAATGGATAGACGCGCTTTC 59.810 52.381 5.73 9.13 0.00 2.62
444 445 1.065273 GGATAGACGCGCTTTCGGA 59.935 57.895 5.73 0.00 35.95 4.55
445 446 0.526954 GGATAGACGCGCTTTCGGAA 60.527 55.000 5.73 0.00 35.95 4.30
446 447 1.488527 GATAGACGCGCTTTCGGAAT 58.511 50.000 5.73 0.00 35.95 3.01
447 448 1.859080 GATAGACGCGCTTTCGGAATT 59.141 47.619 5.73 0.00 35.95 2.17
448 449 1.717194 TAGACGCGCTTTCGGAATTT 58.283 45.000 5.73 0.00 35.95 1.82
449 450 0.872388 AGACGCGCTTTCGGAATTTT 59.128 45.000 5.73 0.00 35.95 1.82
450 451 2.070783 AGACGCGCTTTCGGAATTTTA 58.929 42.857 5.73 0.00 35.95 1.52
451 452 2.159747 AGACGCGCTTTCGGAATTTTAC 60.160 45.455 5.73 0.00 35.95 2.01
452 453 1.135888 ACGCGCTTTCGGAATTTTACC 60.136 47.619 5.73 0.00 35.95 2.85
490 491 1.400242 CGTGCTTTTCTAACCTGCTGC 60.400 52.381 0.00 0.00 0.00 5.25
492 493 1.881973 TGCTTTTCTAACCTGCTGCTG 59.118 47.619 0.00 0.00 0.00 4.41
493 494 1.200948 GCTTTTCTAACCTGCTGCTGG 59.799 52.381 22.17 22.17 0.00 4.85
496 497 2.185004 TTCTAACCTGCTGCTGGTTC 57.815 50.000 36.73 0.00 43.00 3.62
497 498 0.324943 TCTAACCTGCTGCTGGTTCC 59.675 55.000 36.73 0.00 43.00 3.62
498 499 0.326264 CTAACCTGCTGCTGGTTCCT 59.674 55.000 36.73 22.22 43.00 3.36
499 500 1.555075 CTAACCTGCTGCTGGTTCCTA 59.445 52.381 36.73 23.50 43.00 2.94
500 501 0.036875 AACCTGCTGCTGGTTCCTAC 59.963 55.000 30.76 0.00 40.76 3.18
502 503 1.195115 CCTGCTGCTGGTTCCTACTA 58.805 55.000 16.56 0.00 0.00 1.82
503 504 1.137872 CCTGCTGCTGGTTCCTACTAG 59.862 57.143 16.56 0.00 36.07 2.57
510 511 3.895232 CTGGTTCCTACTAGCACATGT 57.105 47.619 0.00 0.00 0.00 3.21
511 512 3.525537 CTGGTTCCTACTAGCACATGTG 58.474 50.000 21.83 21.83 0.00 3.21
521 522 4.156622 CACATGTGCCGCAGCGAG 62.157 66.667 18.75 7.72 44.31 5.03
535 536 4.135153 CGAGCCGAGGTGGGACTG 62.135 72.222 0.00 0.00 38.63 3.51
538 539 4.394712 GCCGAGGTGGGACTGGTG 62.395 72.222 0.00 0.00 38.63 4.17
540 541 4.394712 CGAGGTGGGACTGGTGCC 62.395 72.222 4.29 4.29 41.95 5.01
541 542 4.035102 GAGGTGGGACTGGTGCCC 62.035 72.222 8.72 0.00 46.22 5.36
542 543 4.599500 AGGTGGGACTGGTGCCCT 62.599 66.667 8.72 0.00 46.19 5.19
544 545 4.351054 GTGGGACTGGTGCCCTGG 62.351 72.222 8.72 0.00 46.19 4.45
545 546 4.918360 TGGGACTGGTGCCCTGGT 62.918 66.667 8.72 0.00 46.19 4.00
546 547 4.035102 GGGACTGGTGCCCTGGTC 62.035 72.222 0.00 6.34 42.56 4.02
547 548 3.249189 GGACTGGTGCCCTGGTCA 61.249 66.667 14.33 0.00 32.22 4.02
549 550 1.078143 GACTGGTGCCCTGGTCATC 60.078 63.158 0.00 0.00 31.46 2.92
550 551 2.273449 CTGGTGCCCTGGTCATCC 59.727 66.667 0.00 0.00 0.00 3.51
551 552 2.531428 TGGTGCCCTGGTCATCCA 60.531 61.111 0.00 0.00 42.05 3.41
552 553 1.929860 CTGGTGCCCTGGTCATCCAT 61.930 60.000 0.70 0.00 43.43 3.41
553 554 1.454479 GGTGCCCTGGTCATCCATG 60.454 63.158 0.00 0.00 43.43 3.66
554 555 2.123428 GTGCCCTGGTCATCCATGC 61.123 63.158 0.00 0.00 43.43 4.06
555 556 2.276409 GCCCTGGTCATCCATGCA 59.724 61.111 0.00 0.00 43.43 3.96
558 879 0.256752 CCCTGGTCATCCATGCAGAA 59.743 55.000 0.00 0.00 43.43 3.02
559 880 1.341285 CCCTGGTCATCCATGCAGAAA 60.341 52.381 0.00 0.00 43.43 2.52
562 883 2.821378 CTGGTCATCCATGCAGAAACAA 59.179 45.455 0.00 0.00 43.43 2.83
563 884 3.229293 TGGTCATCCATGCAGAAACAAA 58.771 40.909 0.00 0.00 39.03 2.83
567 888 3.758023 TCATCCATGCAGAAACAAACGAT 59.242 39.130 0.00 0.00 0.00 3.73
570 891 1.906966 CATGCAGAAACAAACGATCGC 59.093 47.619 16.60 0.00 0.00 4.58
572 893 1.069973 TGCAGAAACAAACGATCGCTG 60.070 47.619 16.60 15.30 0.00 5.18
574 895 1.195448 CAGAAACAAACGATCGCTGCT 59.805 47.619 16.60 1.10 0.00 4.24
587 908 2.180769 CTGCTGCGCCGTGTAGTA 59.819 61.111 4.18 0.00 32.10 1.82
589 910 2.181021 GCTGCGCCGTGTAGTAGT 59.819 61.111 4.18 0.00 32.10 2.73
590 911 1.307355 TGCTGCGCCGTGTAGTAGTA 61.307 55.000 4.18 0.00 32.10 1.82
591 912 0.030369 GCTGCGCCGTGTAGTAGTAT 59.970 55.000 4.18 0.00 32.10 2.12
592 913 1.925068 GCTGCGCCGTGTAGTAGTATC 60.925 57.143 4.18 0.00 32.10 2.24
593 914 0.305617 TGCGCCGTGTAGTAGTATCG 59.694 55.000 4.18 0.00 0.00 2.92
1724 3000 0.593128 ATTCTTCGCACACAGCAACC 59.407 50.000 0.00 0.00 46.13 3.77
1961 3263 0.815095 TGACAGTCTCGTGTGTGTGT 59.185 50.000 1.31 0.00 0.00 3.72
1962 3264 1.200483 GACAGTCTCGTGTGTGTGTG 58.800 55.000 0.00 0.00 0.00 3.82
1963 3265 0.530744 ACAGTCTCGTGTGTGTGTGT 59.469 50.000 0.00 0.00 0.00 3.72
1964 3266 0.923403 CAGTCTCGTGTGTGTGTGTG 59.077 55.000 0.00 0.00 0.00 3.82
1965 3267 0.530744 AGTCTCGTGTGTGTGTGTGT 59.469 50.000 0.00 0.00 0.00 3.72
1966 3268 0.645355 GTCTCGTGTGTGTGTGTGTG 59.355 55.000 0.00 0.00 0.00 3.82
1967 3269 0.245266 TCTCGTGTGTGTGTGTGTGT 59.755 50.000 0.00 0.00 0.00 3.72
1968 3270 0.369931 CTCGTGTGTGTGTGTGTGTG 59.630 55.000 0.00 0.00 0.00 3.82
1969 3271 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
1970 3272 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1971 3273 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1972 3274 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1973 3275 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1974 3276 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1975 3277 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1976 3278 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1977 3279 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1978 3280 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1979 3281 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1980 3282 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1981 3283 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1982 3284 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2057 3366 6.346096 CGTAATCCTAGGAGAACCAAAATCA 58.654 40.000 18.34 0.00 38.94 2.57
2063 3372 7.237982 TCCTAGGAGAACCAAAATCAATTCAA 58.762 34.615 7.62 0.00 38.94 2.69
2064 3373 7.895429 TCCTAGGAGAACCAAAATCAATTCAAT 59.105 33.333 7.62 0.00 38.94 2.57
2065 3374 8.193438 CCTAGGAGAACCAAAATCAATTCAATC 58.807 37.037 1.05 0.00 38.94 2.67
2066 3375 7.543359 AGGAGAACCAAAATCAATTCAATCA 57.457 32.000 0.00 0.00 38.94 2.57
2077 3386 3.503363 TCAATTCAATCAGAGGCACACAC 59.497 43.478 0.00 0.00 0.00 3.82
2082 3392 0.534877 ATCAGAGGCACACACGCAAA 60.535 50.000 0.00 0.00 0.00 3.68
2091 3401 3.052036 GCACACACGCAAATTTTCATCT 58.948 40.909 0.00 0.00 0.00 2.90
2096 3406 4.744137 CACACGCAAATTTTCATCTGGAAA 59.256 37.500 0.00 0.00 43.59 3.13
2097 3407 4.744631 ACACGCAAATTTTCATCTGGAAAC 59.255 37.500 0.00 0.00 44.89 2.78
2106 3416 6.633500 TTTTCATCTGGAAACTAACTGTGG 57.367 37.500 0.00 0.00 44.89 4.17
2116 3426 5.376854 AAACTAACTGTGGATGACATTGC 57.623 39.130 0.00 0.00 32.74 3.56
2117 3427 4.019792 ACTAACTGTGGATGACATTGCA 57.980 40.909 0.00 0.00 32.74 4.08
2160 3470 3.786495 TGGAGGACCAGAACAGCTA 57.214 52.632 0.00 0.00 41.77 3.32
2171 3481 3.234630 AACAGCTACCTTCGCCGCA 62.235 57.895 0.00 0.00 0.00 5.69
2200 3514 1.227764 CATCGCTGCCTGCCTATGT 60.228 57.895 0.00 0.00 38.78 2.29
2220 3534 1.690352 TCTGCTGAGCTGCTATGCATA 59.310 47.619 22.94 16.10 38.13 3.14
2221 3535 1.799403 CTGCTGAGCTGCTATGCATAC 59.201 52.381 22.94 0.99 38.13 2.39
2228 3545 4.342092 TGAGCTGCTATGCATACTTACTGA 59.658 41.667 0.15 0.00 38.13 3.41
2243 3560 5.930135 ACTTACTGACTTCCTGAATGTGTT 58.070 37.500 0.00 0.00 0.00 3.32
2301 3622 2.267006 CTGCTGTGGAGGCGTCAT 59.733 61.111 8.91 0.00 0.00 3.06
2306 3627 2.264794 GTGGAGGCGTCATCGGTT 59.735 61.111 8.91 0.00 37.56 4.44
2375 3696 1.825474 GAGGAGGAGGAATTGACGACA 59.175 52.381 0.00 0.00 0.00 4.35
2478 3805 4.360563 GTGCGTATGAACACACTAGCTAT 58.639 43.478 0.00 0.00 36.06 2.97
2482 3809 5.117287 GCGTATGAACACACTAGCTATTAGC 59.883 44.000 7.64 7.64 42.84 3.09
2486 3813 6.978674 TGAACACACTAGCTATTAGCCTAT 57.021 37.500 12.05 0.00 43.77 2.57
2487 3814 7.361457 TGAACACACTAGCTATTAGCCTATT 57.639 36.000 12.05 0.00 43.77 1.73
2488 3815 8.473358 TGAACACACTAGCTATTAGCCTATTA 57.527 34.615 12.05 0.00 43.77 0.98
2490 3817 8.707796 AACACACTAGCTATTAGCCTATTAGA 57.292 34.615 12.05 0.00 43.77 2.10
2491 3818 8.887264 ACACACTAGCTATTAGCCTATTAGAT 57.113 34.615 12.05 1.65 43.77 1.98
2492 3819 9.976776 ACACACTAGCTATTAGCCTATTAGATA 57.023 33.333 12.05 2.63 43.77 1.98
2499 3826 9.856162 AGCTATTAGCCTATTAGATAGACTACC 57.144 37.037 12.05 0.00 43.77 3.18
2500 3827 9.856162 GCTATTAGCCTATTAGATAGACTACCT 57.144 37.037 4.21 0.00 34.48 3.08
2518 3845 3.782889 CCTTATTGGTACCTGCAAAGC 57.217 47.619 14.36 0.00 0.00 3.51
2519 3846 3.088532 CCTTATTGGTACCTGCAAAGCA 58.911 45.455 14.36 0.00 36.92 3.91
2575 3902 3.560481 GTGATCAATCTGCATCCTGACTG 59.440 47.826 0.00 0.00 0.00 3.51
2618 3949 1.140052 TGTTTTGCAGGTCGAGGAGAA 59.860 47.619 0.00 0.00 0.00 2.87
2628 3959 2.289133 GGTCGAGGAGAAATGATAGCCC 60.289 54.545 0.00 0.00 0.00 5.19
2648 3979 0.168568 GACGGAAGACAGACGGAGAC 59.831 60.000 0.00 0.00 0.00 3.36
2652 3983 2.288458 CGGAAGACAGACGGAGACTATC 59.712 54.545 0.00 0.00 0.00 2.08
2661 3992 6.976088 ACAGACGGAGACTATCATTGATTAG 58.024 40.000 4.14 3.53 0.00 1.73
2667 4003 8.692710 ACGGAGACTATCATTGATTAGTTAACA 58.307 33.333 8.61 0.00 0.00 2.41
2738 4109 1.130561 GTCAACAAATAGCAGACGCCC 59.869 52.381 0.00 0.00 39.83 6.13
2751 4122 1.003112 ACGCCCGTATTTTGCTCCA 60.003 52.632 0.00 0.00 0.00 3.86
2753 4124 1.807226 GCCCGTATTTTGCTCCACC 59.193 57.895 0.00 0.00 0.00 4.61
2760 4131 4.158764 CCGTATTTTGCTCCACCCAATTTA 59.841 41.667 0.00 0.00 0.00 1.40
2824 4208 5.676744 CGTTGGTTCATATGAATTTACTGCG 59.323 40.000 20.65 14.18 36.33 5.18
2832 4230 7.026562 TCATATGAATTTACTGCGGTGTTTTG 58.973 34.615 8.92 0.00 0.00 2.44
2857 4255 2.494059 ACATCGGTGTTGAAACTCTGG 58.506 47.619 0.00 0.00 34.01 3.86
2859 4257 0.468226 TCGGTGTTGAAACTCTGGCT 59.532 50.000 4.69 0.00 31.50 4.75
2872 4278 3.087031 ACTCTGGCTTTGATCAACATGG 58.913 45.455 7.89 0.37 0.00 3.66
2875 4281 3.010027 TCTGGCTTTGATCAACATGGGTA 59.990 43.478 7.89 0.00 0.00 3.69
2890 4300 7.924412 TCAACATGGGTATTACTACTTCGATTC 59.076 37.037 0.00 0.00 0.00 2.52
2901 4312 6.723131 ACTACTTCGATTCTTTTAGGCAAC 57.277 37.500 0.00 0.00 0.00 4.17
2902 4313 6.228258 ACTACTTCGATTCTTTTAGGCAACA 58.772 36.000 0.00 0.00 41.41 3.33
2903 4314 6.879458 ACTACTTCGATTCTTTTAGGCAACAT 59.121 34.615 0.00 0.00 41.41 2.71
2904 4315 5.942872 ACTTCGATTCTTTTAGGCAACATG 58.057 37.500 0.00 0.00 41.41 3.21
3127 4647 8.942338 AACAACTTAAACTTTGATTTCCTTCC 57.058 30.769 0.00 0.00 0.00 3.46
3133 4653 9.908152 CTTAAACTTTGATTTCCTTCCGTTTAT 57.092 29.630 0.00 0.00 0.00 1.40
3136 4656 7.761038 ACTTTGATTTCCTTCCGTTTATCTT 57.239 32.000 0.00 0.00 0.00 2.40
3176 4696 7.095229 CCGTTCACTTTACAATCATTCTTCTCA 60.095 37.037 0.00 0.00 0.00 3.27
3204 4724 3.920231 AATCGGGAACTAACCTAACCC 57.080 47.619 0.00 0.00 37.42 4.11
3205 4725 2.629017 TCGGGAACTAACCTAACCCT 57.371 50.000 0.00 0.00 38.51 4.34
3206 4726 2.460669 TCGGGAACTAACCTAACCCTC 58.539 52.381 0.00 0.00 38.51 4.30
3207 4727 1.483827 CGGGAACTAACCTAACCCTCC 59.516 57.143 0.00 0.00 38.51 4.30
3208 4728 1.842562 GGGAACTAACCTAACCCTCCC 59.157 57.143 0.00 0.00 37.75 4.30
3209 4729 2.563828 GGGAACTAACCTAACCCTCCCT 60.564 54.545 0.00 0.00 38.42 4.20
3210 4730 2.770802 GGAACTAACCTAACCCTCCCTC 59.229 54.545 0.00 0.00 0.00 4.30
3211 4731 2.156102 ACTAACCTAACCCTCCCTCG 57.844 55.000 0.00 0.00 0.00 4.63
3212 4732 1.642762 ACTAACCTAACCCTCCCTCGA 59.357 52.381 0.00 0.00 0.00 4.04
3213 4733 2.246849 ACTAACCTAACCCTCCCTCGAT 59.753 50.000 0.00 0.00 0.00 3.59
3214 4734 2.265526 AACCTAACCCTCCCTCGATT 57.734 50.000 0.00 0.00 0.00 3.34
3215 4735 1.790818 ACCTAACCCTCCCTCGATTC 58.209 55.000 0.00 0.00 0.00 2.52
3216 4736 1.049402 CCTAACCCTCCCTCGATTCC 58.951 60.000 0.00 0.00 0.00 3.01
3217 4737 1.049402 CTAACCCTCCCTCGATTCCC 58.951 60.000 0.00 0.00 0.00 3.97
3218 4738 0.399519 TAACCCTCCCTCGATTCCCC 60.400 60.000 0.00 0.00 0.00 4.81
3219 4739 3.234730 CCCTCCCTCGATTCCCCG 61.235 72.222 0.00 0.00 0.00 5.73
3220 4740 2.444140 CCTCCCTCGATTCCCCGT 60.444 66.667 0.00 0.00 0.00 5.28
3221 4741 2.797278 CCTCCCTCGATTCCCCGTG 61.797 68.421 0.00 0.00 0.00 4.94
3222 4742 2.038329 TCCCTCGATTCCCCGTGT 59.962 61.111 0.00 0.00 0.00 4.49
3223 4743 2.186903 CCCTCGATTCCCCGTGTG 59.813 66.667 0.00 0.00 0.00 3.82
3224 4744 2.186903 CCTCGATTCCCCGTGTGG 59.813 66.667 0.00 0.00 0.00 4.17
3225 4745 2.511600 CTCGATTCCCCGTGTGGC 60.512 66.667 0.00 0.00 0.00 5.01
3226 4746 4.444838 TCGATTCCCCGTGTGGCG 62.445 66.667 0.00 0.00 40.95 5.69
3248 4768 3.632080 CACACCACACCGGGGCTA 61.632 66.667 1.73 0.00 45.24 3.93
3249 4769 3.633116 ACACCACACCGGGGCTAC 61.633 66.667 1.73 0.00 45.24 3.58
3250 4770 4.404098 CACCACACCGGGGCTACC 62.404 72.222 1.73 0.00 40.22 3.18
3262 4782 4.785453 GCTACCCTTGCTGGCGCT 62.785 66.667 7.64 0.00 36.97 5.92
3263 4783 2.512515 CTACCCTTGCTGGCGCTC 60.513 66.667 7.64 0.00 36.97 5.03
3264 4784 4.451150 TACCCTTGCTGGCGCTCG 62.451 66.667 7.64 0.00 36.97 5.03
3281 4801 4.902258 GAGGCCCCCTCCCCTACC 62.902 77.778 0.00 0.00 44.36 3.18
3283 4803 4.902258 GGCCCCCTCCCCTACCTC 62.902 77.778 0.00 0.00 0.00 3.85
3284 4804 4.902258 GCCCCCTCCCCTACCTCC 62.902 77.778 0.00 0.00 0.00 4.30
3285 4805 4.558884 CCCCCTCCCCTACCTCCG 62.559 77.778 0.00 0.00 0.00 4.63
3287 4807 4.159108 CCCTCCCCTACCTCCGCT 62.159 72.222 0.00 0.00 0.00 5.52
3288 4808 2.840102 CCTCCCCTACCTCCGCTG 60.840 72.222 0.00 0.00 0.00 5.18
3289 4809 2.042843 CTCCCCTACCTCCGCTGT 60.043 66.667 0.00 0.00 0.00 4.40
3290 4810 1.686110 CTCCCCTACCTCCGCTGTT 60.686 63.158 0.00 0.00 0.00 3.16
3291 4811 1.961180 CTCCCCTACCTCCGCTGTTG 61.961 65.000 0.00 0.00 0.00 3.33
3292 4812 2.125106 CCCTACCTCCGCTGTTGC 60.125 66.667 0.00 0.00 0.00 4.17
3293 4813 2.125106 CCTACCTCCGCTGTTGCC 60.125 66.667 0.00 0.00 35.36 4.52
3294 4814 2.662596 CTACCTCCGCTGTTGCCA 59.337 61.111 0.00 0.00 35.36 4.92
3295 4815 1.448540 CTACCTCCGCTGTTGCCAG 60.449 63.158 0.00 0.00 41.91 4.85
3296 4816 1.888436 CTACCTCCGCTGTTGCCAGA 61.888 60.000 0.00 0.00 41.50 3.86
3297 4817 1.888436 TACCTCCGCTGTTGCCAGAG 61.888 60.000 0.00 0.00 41.50 3.35
3363 4883 4.624364 TGGTCGCTGCCAGGTGTG 62.624 66.667 0.00 0.00 33.97 3.82
3365 4885 4.626081 GTCGCTGCCAGGTGTGGT 62.626 66.667 0.00 0.00 46.96 4.16
3366 4886 4.624364 TCGCTGCCAGGTGTGGTG 62.624 66.667 0.00 0.00 46.96 4.17
3386 4906 4.829518 GGCGTCGCCCATTTTCGC 62.830 66.667 26.23 0.00 44.06 4.70
3387 4907 3.799755 GCGTCGCCCATTTTCGCT 61.800 61.111 5.75 0.00 42.88 4.93
3388 4908 2.399611 CGTCGCCCATTTTCGCTC 59.600 61.111 0.00 0.00 0.00 5.03
3389 4909 2.791927 GTCGCCCATTTTCGCTCC 59.208 61.111 0.00 0.00 0.00 4.70
3390 4910 1.745489 GTCGCCCATTTTCGCTCCT 60.745 57.895 0.00 0.00 0.00 3.69
3391 4911 1.002624 TCGCCCATTTTCGCTCCTT 60.003 52.632 0.00 0.00 0.00 3.36
3392 4912 1.024579 TCGCCCATTTTCGCTCCTTC 61.025 55.000 0.00 0.00 0.00 3.46
3393 4913 1.305219 CGCCCATTTTCGCTCCTTCA 61.305 55.000 0.00 0.00 0.00 3.02
3394 4914 0.453390 GCCCATTTTCGCTCCTTCAG 59.547 55.000 0.00 0.00 0.00 3.02
3395 4915 0.453390 CCCATTTTCGCTCCTTCAGC 59.547 55.000 0.00 0.00 45.85 4.26
3402 4922 3.123620 GCTCCTTCAGCTGCGGTG 61.124 66.667 9.47 13.35 45.83 4.94
3403 4923 2.435586 CTCCTTCAGCTGCGGTGG 60.436 66.667 9.47 8.22 0.00 4.61
3404 4924 3.241530 TCCTTCAGCTGCGGTGGT 61.242 61.111 9.47 0.00 0.00 4.16
3405 4925 3.052082 CCTTCAGCTGCGGTGGTG 61.052 66.667 9.47 3.11 36.85 4.17
3406 4926 2.281070 CTTCAGCTGCGGTGGTGT 60.281 61.111 9.47 0.00 36.85 4.16
3407 4927 2.591429 TTCAGCTGCGGTGGTGTG 60.591 61.111 9.47 0.00 36.85 3.82
3408 4928 3.399105 TTCAGCTGCGGTGGTGTGT 62.399 57.895 9.47 0.00 36.85 3.72
3409 4929 2.884997 TTCAGCTGCGGTGGTGTGTT 62.885 55.000 9.47 0.00 36.85 3.32
3410 4930 2.901840 AGCTGCGGTGGTGTGTTG 60.902 61.111 0.00 0.00 0.00 3.33
3411 4931 3.209097 GCTGCGGTGGTGTGTTGT 61.209 61.111 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.074538 ACTGTCCTAGAAAAGTGCCCAAT 59.925 43.478 0.00 0.00 0.00 3.16
1 2 2.441750 ACTGTCCTAGAAAAGTGCCCAA 59.558 45.455 0.00 0.00 0.00 4.12
2 3 2.054799 ACTGTCCTAGAAAAGTGCCCA 58.945 47.619 0.00 0.00 0.00 5.36
3 4 2.861147 ACTGTCCTAGAAAAGTGCCC 57.139 50.000 0.00 0.00 0.00 5.36
4 5 4.793028 GCAAAACTGTCCTAGAAAAGTGCC 60.793 45.833 0.00 0.00 0.00 5.01
5 6 4.036852 AGCAAAACTGTCCTAGAAAAGTGC 59.963 41.667 0.00 0.00 0.00 4.40
6 7 5.757850 AGCAAAACTGTCCTAGAAAAGTG 57.242 39.130 0.00 0.00 0.00 3.16
7 8 6.827727 TCTAGCAAAACTGTCCTAGAAAAGT 58.172 36.000 0.00 0.00 34.85 2.66
8 9 7.442666 AGTTCTAGCAAAACTGTCCTAGAAAAG 59.557 37.037 15.43 0.00 44.11 2.27
9 10 7.280356 AGTTCTAGCAAAACTGTCCTAGAAAA 58.720 34.615 15.43 1.44 44.11 2.29
10 11 6.827727 AGTTCTAGCAAAACTGTCCTAGAAA 58.172 36.000 15.43 4.92 44.11 2.52
11 12 6.041637 TGAGTTCTAGCAAAACTGTCCTAGAA 59.958 38.462 12.25 12.25 41.84 2.10
12 13 5.538813 TGAGTTCTAGCAAAACTGTCCTAGA 59.461 40.000 0.32 0.00 37.10 2.43
13 14 5.784177 TGAGTTCTAGCAAAACTGTCCTAG 58.216 41.667 0.32 0.00 37.10 3.02
14 15 5.801531 TGAGTTCTAGCAAAACTGTCCTA 57.198 39.130 0.32 0.00 37.10 2.94
15 16 4.689612 TGAGTTCTAGCAAAACTGTCCT 57.310 40.909 0.32 0.00 37.10 3.85
16 17 5.241662 AGATGAGTTCTAGCAAAACTGTCC 58.758 41.667 0.32 0.00 37.10 4.02
17 18 7.518731 CTAGATGAGTTCTAGCAAAACTGTC 57.481 40.000 0.32 0.23 45.63 3.51
43 44 9.699410 AGGTGAATGAAACCAAATTATATCTCA 57.301 29.630 0.00 0.00 40.40 3.27
53 54 9.137459 TGACTATAAAAGGTGAATGAAACCAAA 57.863 29.630 0.00 0.00 40.40 3.28
54 55 8.698973 TGACTATAAAAGGTGAATGAAACCAA 57.301 30.769 0.00 0.00 40.40 3.67
55 56 8.877864 ATGACTATAAAAGGTGAATGAAACCA 57.122 30.769 0.00 0.00 40.40 3.67
56 57 9.573133 CAATGACTATAAAAGGTGAATGAAACC 57.427 33.333 0.00 0.00 38.03 3.27
57 58 9.573133 CCAATGACTATAAAAGGTGAATGAAAC 57.427 33.333 0.00 0.00 0.00 2.78
58 59 9.527157 TCCAATGACTATAAAAGGTGAATGAAA 57.473 29.630 0.00 0.00 0.00 2.69
59 60 9.699410 ATCCAATGACTATAAAAGGTGAATGAA 57.301 29.630 0.00 0.00 0.00 2.57
60 61 9.123902 CATCCAATGACTATAAAAGGTGAATGA 57.876 33.333 0.00 0.00 0.00 2.57
61 62 8.906867 ACATCCAATGACTATAAAAGGTGAATG 58.093 33.333 0.00 0.00 0.00 2.67
62 63 8.906867 CACATCCAATGACTATAAAAGGTGAAT 58.093 33.333 0.00 0.00 0.00 2.57
63 64 8.106462 TCACATCCAATGACTATAAAAGGTGAA 58.894 33.333 0.00 0.00 0.00 3.18
64 65 7.629157 TCACATCCAATGACTATAAAAGGTGA 58.371 34.615 0.00 0.00 0.00 4.02
65 66 7.864108 TCACATCCAATGACTATAAAAGGTG 57.136 36.000 0.00 0.00 0.00 4.00
66 67 8.055181 ACATCACATCCAATGACTATAAAAGGT 58.945 33.333 0.00 0.00 0.00 3.50
67 68 8.455903 ACATCACATCCAATGACTATAAAAGG 57.544 34.615 0.00 0.00 0.00 3.11
75 76 9.281371 CATCTTATAACATCACATCCAATGACT 57.719 33.333 0.00 0.00 0.00 3.41
76 77 8.019669 GCATCTTATAACATCACATCCAATGAC 58.980 37.037 0.00 0.00 0.00 3.06
77 78 7.095102 CGCATCTTATAACATCACATCCAATGA 60.095 37.037 0.00 0.00 0.00 2.57
78 79 7.019418 CGCATCTTATAACATCACATCCAATG 58.981 38.462 0.00 0.00 0.00 2.82
79 80 6.712095 ACGCATCTTATAACATCACATCCAAT 59.288 34.615 0.00 0.00 0.00 3.16
80 81 6.018016 CACGCATCTTATAACATCACATCCAA 60.018 38.462 0.00 0.00 0.00 3.53
81 82 5.466393 CACGCATCTTATAACATCACATCCA 59.534 40.000 0.00 0.00 0.00 3.41
82 83 5.466728 ACACGCATCTTATAACATCACATCC 59.533 40.000 0.00 0.00 0.00 3.51
83 84 6.018751 ACACACGCATCTTATAACATCACATC 60.019 38.462 0.00 0.00 0.00 3.06
84 85 5.817296 ACACACGCATCTTATAACATCACAT 59.183 36.000 0.00 0.00 0.00 3.21
85 86 5.063312 CACACACGCATCTTATAACATCACA 59.937 40.000 0.00 0.00 0.00 3.58
86 87 5.492854 CACACACGCATCTTATAACATCAC 58.507 41.667 0.00 0.00 0.00 3.06
87 88 4.033932 GCACACACGCATCTTATAACATCA 59.966 41.667 0.00 0.00 0.00 3.07
88 89 4.271049 AGCACACACGCATCTTATAACATC 59.729 41.667 0.00 0.00 0.00 3.06
89 90 4.034394 CAGCACACACGCATCTTATAACAT 59.966 41.667 0.00 0.00 0.00 2.71
90 91 3.370672 CAGCACACACGCATCTTATAACA 59.629 43.478 0.00 0.00 0.00 2.41
91 92 3.616821 TCAGCACACACGCATCTTATAAC 59.383 43.478 0.00 0.00 0.00 1.89
92 93 3.616821 GTCAGCACACACGCATCTTATAA 59.383 43.478 0.00 0.00 0.00 0.98
93 94 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
94 95 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
95 96 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
96 97 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
97 98 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
98 99 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
99 100 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
100 101 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
101 102 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
102 103 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
103 104 0.531090 TAACCCACGTCAGCACACAC 60.531 55.000 0.00 0.00 0.00 3.82
104 105 0.394938 ATAACCCACGTCAGCACACA 59.605 50.000 0.00 0.00 0.00 3.72
105 106 1.519408 AATAACCCACGTCAGCACAC 58.481 50.000 0.00 0.00 0.00 3.82
106 107 2.264005 AAATAACCCACGTCAGCACA 57.736 45.000 0.00 0.00 0.00 4.57
107 108 3.243267 ACAAAAATAACCCACGTCAGCAC 60.243 43.478 0.00 0.00 0.00 4.40
108 109 2.952978 ACAAAAATAACCCACGTCAGCA 59.047 40.909 0.00 0.00 0.00 4.41
109 110 3.636282 ACAAAAATAACCCACGTCAGC 57.364 42.857 0.00 0.00 0.00 4.26
110 111 5.432885 AGAACAAAAATAACCCACGTCAG 57.567 39.130 0.00 0.00 0.00 3.51
111 112 5.357314 TCAAGAACAAAAATAACCCACGTCA 59.643 36.000 0.00 0.00 0.00 4.35
112 113 5.823353 TCAAGAACAAAAATAACCCACGTC 58.177 37.500 0.00 0.00 0.00 4.34
113 114 5.838531 TCAAGAACAAAAATAACCCACGT 57.161 34.783 0.00 0.00 0.00 4.49
114 115 7.707774 AAATCAAGAACAAAAATAACCCACG 57.292 32.000 0.00 0.00 0.00 4.94
115 116 9.103861 TGAAAATCAAGAACAAAAATAACCCAC 57.896 29.630 0.00 0.00 0.00 4.61
116 117 9.672673 TTGAAAATCAAGAACAAAAATAACCCA 57.327 25.926 0.00 0.00 31.83 4.51
132 133 6.957920 TGGTCTCATTCACTTGAAAATCAA 57.042 33.333 0.00 0.00 37.61 2.57
133 134 6.957920 TTGGTCTCATTCACTTGAAAATCA 57.042 33.333 0.00 0.00 37.61 2.57
134 135 8.822652 AATTTGGTCTCATTCACTTGAAAATC 57.177 30.769 0.00 0.00 37.61 2.17
165 166 7.506261 GGGAGTACCTAGAACTCATCTAAATGA 59.494 40.741 20.28 0.00 44.25 2.57
166 167 7.662897 GGGAGTACCTAGAACTCATCTAAATG 58.337 42.308 20.28 0.00 44.25 2.32
167 168 7.842887 GGGAGTACCTAGAACTCATCTAAAT 57.157 40.000 20.28 0.00 44.25 1.40
183 184 8.818622 ATTTACCATCTTAAAAAGGGAGTACC 57.181 34.615 0.00 0.00 40.67 3.34
222 223 8.814038 AAAGCTATCACTCCATGACTATTTTT 57.186 30.769 0.00 0.00 41.24 1.94
223 224 8.680903 CAAAAGCTATCACTCCATGACTATTTT 58.319 33.333 0.00 0.00 41.24 1.82
224 225 8.049117 TCAAAAGCTATCACTCCATGACTATTT 58.951 33.333 0.00 0.00 41.24 1.40
225 226 7.568349 TCAAAAGCTATCACTCCATGACTATT 58.432 34.615 0.00 0.00 41.24 1.73
226 227 7.129457 TCAAAAGCTATCACTCCATGACTAT 57.871 36.000 0.00 0.00 41.24 2.12
227 228 6.544928 TCAAAAGCTATCACTCCATGACTA 57.455 37.500 0.00 0.00 41.24 2.59
228 229 5.426689 TCAAAAGCTATCACTCCATGACT 57.573 39.130 0.00 0.00 41.24 3.41
229 230 6.690194 ATTCAAAAGCTATCACTCCATGAC 57.310 37.500 0.00 0.00 41.24 3.06
230 231 8.985315 ATAATTCAAAAGCTATCACTCCATGA 57.015 30.769 0.00 0.00 43.13 3.07
231 232 9.674824 GAATAATTCAAAAGCTATCACTCCATG 57.325 33.333 0.00 0.00 0.00 3.66
232 233 9.638176 AGAATAATTCAAAAGCTATCACTCCAT 57.362 29.630 0.00 0.00 0.00 3.41
233 234 9.466497 AAGAATAATTCAAAAGCTATCACTCCA 57.534 29.630 0.00 0.00 0.00 3.86
254 255 9.016623 GCGAAAAACTAACACTTTGTAAAGAAT 57.983 29.630 11.07 0.35 39.31 2.40
255 256 7.485595 GGCGAAAAACTAACACTTTGTAAAGAA 59.514 33.333 11.07 0.00 39.31 2.52
256 257 6.968335 GGCGAAAAACTAACACTTTGTAAAGA 59.032 34.615 11.07 0.00 39.31 2.52
257 258 6.748198 TGGCGAAAAACTAACACTTTGTAAAG 59.252 34.615 2.94 2.94 41.73 1.85
258 259 6.618811 TGGCGAAAAACTAACACTTTGTAAA 58.381 32.000 0.00 0.00 0.00 2.01
259 260 6.192234 TGGCGAAAAACTAACACTTTGTAA 57.808 33.333 0.00 0.00 0.00 2.41
260 261 5.220892 CCTGGCGAAAAACTAACACTTTGTA 60.221 40.000 0.00 0.00 0.00 2.41
261 262 4.439563 CCTGGCGAAAAACTAACACTTTGT 60.440 41.667 0.00 0.00 0.00 2.83
262 263 4.041723 CCTGGCGAAAAACTAACACTTTG 58.958 43.478 0.00 0.00 0.00 2.77
263 264 3.067601 CCCTGGCGAAAAACTAACACTTT 59.932 43.478 0.00 0.00 0.00 2.66
264 265 2.621526 CCCTGGCGAAAAACTAACACTT 59.378 45.455 0.00 0.00 0.00 3.16
265 266 2.227194 CCCTGGCGAAAAACTAACACT 58.773 47.619 0.00 0.00 0.00 3.55
266 267 1.951602 ACCCTGGCGAAAAACTAACAC 59.048 47.619 0.00 0.00 0.00 3.32
267 268 1.950909 CACCCTGGCGAAAAACTAACA 59.049 47.619 0.00 0.00 0.00 2.41
268 269 2.223745 TCACCCTGGCGAAAAACTAAC 58.776 47.619 0.00 0.00 0.00 2.34
269 270 2.158726 ACTCACCCTGGCGAAAAACTAA 60.159 45.455 0.00 0.00 0.00 2.24
270 271 1.418637 ACTCACCCTGGCGAAAAACTA 59.581 47.619 0.00 0.00 0.00 2.24
271 272 0.182775 ACTCACCCTGGCGAAAAACT 59.817 50.000 0.00 0.00 0.00 2.66
272 273 0.591659 GACTCACCCTGGCGAAAAAC 59.408 55.000 0.00 0.00 0.00 2.43
273 274 0.882927 CGACTCACCCTGGCGAAAAA 60.883 55.000 0.00 0.00 0.00 1.94
274 275 1.301401 CGACTCACCCTGGCGAAAA 60.301 57.895 0.00 0.00 0.00 2.29
275 276 1.750341 TTCGACTCACCCTGGCGAAA 61.750 55.000 1.75 0.00 37.93 3.46
276 277 1.541310 ATTCGACTCACCCTGGCGAA 61.541 55.000 6.88 6.88 43.78 4.70
277 278 1.541310 AATTCGACTCACCCTGGCGA 61.541 55.000 0.00 0.00 0.00 5.54
278 279 1.079127 AATTCGACTCACCCTGGCG 60.079 57.895 0.00 0.00 0.00 5.69
279 280 0.321653 ACAATTCGACTCACCCTGGC 60.322 55.000 0.00 0.00 0.00 4.85
280 281 1.442769 CACAATTCGACTCACCCTGG 58.557 55.000 0.00 0.00 0.00 4.45
281 282 1.442769 CCACAATTCGACTCACCCTG 58.557 55.000 0.00 0.00 0.00 4.45
282 283 0.324943 CCCACAATTCGACTCACCCT 59.675 55.000 0.00 0.00 0.00 4.34
283 284 1.305930 GCCCACAATTCGACTCACCC 61.306 60.000 0.00 0.00 0.00 4.61
284 285 0.605319 TGCCCACAATTCGACTCACC 60.605 55.000 0.00 0.00 0.00 4.02
285 286 1.131126 CATGCCCACAATTCGACTCAC 59.869 52.381 0.00 0.00 0.00 3.51
286 287 1.003003 TCATGCCCACAATTCGACTCA 59.997 47.619 0.00 0.00 0.00 3.41
287 288 1.737838 TCATGCCCACAATTCGACTC 58.262 50.000 0.00 0.00 0.00 3.36
288 289 2.019249 CATCATGCCCACAATTCGACT 58.981 47.619 0.00 0.00 0.00 4.18
289 290 2.016318 TCATCATGCCCACAATTCGAC 58.984 47.619 0.00 0.00 0.00 4.20
290 291 2.416680 TCATCATGCCCACAATTCGA 57.583 45.000 0.00 0.00 0.00 3.71
291 292 2.223641 CCTTCATCATGCCCACAATTCG 60.224 50.000 0.00 0.00 0.00 3.34
292 293 2.482490 GCCTTCATCATGCCCACAATTC 60.482 50.000 0.00 0.00 0.00 2.17
293 294 1.483415 GCCTTCATCATGCCCACAATT 59.517 47.619 0.00 0.00 0.00 2.32
294 295 1.117150 GCCTTCATCATGCCCACAAT 58.883 50.000 0.00 0.00 0.00 2.71
295 296 0.251698 TGCCTTCATCATGCCCACAA 60.252 50.000 0.00 0.00 0.00 3.33
296 297 0.032912 ATGCCTTCATCATGCCCACA 60.033 50.000 0.00 0.00 0.00 4.17
297 298 1.117150 AATGCCTTCATCATGCCCAC 58.883 50.000 0.00 0.00 31.27 4.61
298 299 1.116308 CAATGCCTTCATCATGCCCA 58.884 50.000 0.00 0.00 31.27 5.36
299 300 1.117150 ACAATGCCTTCATCATGCCC 58.883 50.000 0.00 0.00 31.27 5.36
300 301 2.973694 AACAATGCCTTCATCATGCC 57.026 45.000 0.00 0.00 31.27 4.40
301 302 4.577693 TCTCTAACAATGCCTTCATCATGC 59.422 41.667 0.00 0.00 31.27 4.06
302 303 6.879276 ATCTCTAACAATGCCTTCATCATG 57.121 37.500 0.00 0.00 31.27 3.07
303 304 7.971201 TCTATCTCTAACAATGCCTTCATCAT 58.029 34.615 0.00 0.00 31.27 2.45
304 305 7.070447 ACTCTATCTCTAACAATGCCTTCATCA 59.930 37.037 0.00 0.00 31.27 3.07
305 306 7.384660 CACTCTATCTCTAACAATGCCTTCATC 59.615 40.741 0.00 0.00 31.27 2.92
306 307 7.215789 CACTCTATCTCTAACAATGCCTTCAT 58.784 38.462 0.00 0.00 33.53 2.57
307 308 6.407412 CCACTCTATCTCTAACAATGCCTTCA 60.407 42.308 0.00 0.00 0.00 3.02
308 309 5.988561 CCACTCTATCTCTAACAATGCCTTC 59.011 44.000 0.00 0.00 0.00 3.46
309 310 5.663106 TCCACTCTATCTCTAACAATGCCTT 59.337 40.000 0.00 0.00 0.00 4.35
310 311 5.211973 TCCACTCTATCTCTAACAATGCCT 58.788 41.667 0.00 0.00 0.00 4.75
311 312 5.510520 CCTCCACTCTATCTCTAACAATGCC 60.511 48.000 0.00 0.00 0.00 4.40
312 313 5.303078 TCCTCCACTCTATCTCTAACAATGC 59.697 44.000 0.00 0.00 0.00 3.56
313 314 6.516527 GCTCCTCCACTCTATCTCTAACAATG 60.517 46.154 0.00 0.00 0.00 2.82
314 315 5.538433 GCTCCTCCACTCTATCTCTAACAAT 59.462 44.000 0.00 0.00 0.00 2.71
315 316 4.890581 GCTCCTCCACTCTATCTCTAACAA 59.109 45.833 0.00 0.00 0.00 2.83
316 317 4.079730 TGCTCCTCCACTCTATCTCTAACA 60.080 45.833 0.00 0.00 0.00 2.41
317 318 4.465886 TGCTCCTCCACTCTATCTCTAAC 58.534 47.826 0.00 0.00 0.00 2.34
318 319 4.797912 TGCTCCTCCACTCTATCTCTAA 57.202 45.455 0.00 0.00 0.00 2.10
319 320 4.797912 TTGCTCCTCCACTCTATCTCTA 57.202 45.455 0.00 0.00 0.00 2.43
320 321 3.678965 TTGCTCCTCCACTCTATCTCT 57.321 47.619 0.00 0.00 0.00 3.10
321 322 3.006752 CCATTGCTCCTCCACTCTATCTC 59.993 52.174 0.00 0.00 0.00 2.75
322 323 2.971330 CCATTGCTCCTCCACTCTATCT 59.029 50.000 0.00 0.00 0.00 1.98
323 324 2.968574 TCCATTGCTCCTCCACTCTATC 59.031 50.000 0.00 0.00 0.00 2.08
324 325 2.971330 CTCCATTGCTCCTCCACTCTAT 59.029 50.000 0.00 0.00 0.00 1.98
325 326 2.392662 CTCCATTGCTCCTCCACTCTA 58.607 52.381 0.00 0.00 0.00 2.43
326 327 1.202330 CTCCATTGCTCCTCCACTCT 58.798 55.000 0.00 0.00 0.00 3.24
327 328 0.463474 GCTCCATTGCTCCTCCACTC 60.463 60.000 0.00 0.00 0.00 3.51
328 329 1.203441 TGCTCCATTGCTCCTCCACT 61.203 55.000 0.00 0.00 0.00 4.00
329 330 0.106819 ATGCTCCATTGCTCCTCCAC 60.107 55.000 0.00 0.00 0.00 4.02
330 331 0.106868 CATGCTCCATTGCTCCTCCA 60.107 55.000 0.00 0.00 0.00 3.86
331 332 1.453762 GCATGCTCCATTGCTCCTCC 61.454 60.000 11.37 0.00 0.00 4.30
332 333 0.750546 TGCATGCTCCATTGCTCCTC 60.751 55.000 20.33 0.00 0.00 3.71
333 334 0.106167 ATGCATGCTCCATTGCTCCT 60.106 50.000 20.33 0.00 0.00 3.69
334 335 0.032130 CATGCATGCTCCATTGCTCC 59.968 55.000 20.33 0.00 0.00 4.70
335 336 3.569916 CATGCATGCTCCATTGCTC 57.430 52.632 20.33 0.00 0.00 4.26
355 356 1.064389 GGTTCCTAAGCTCCAAGCCAT 60.064 52.381 0.00 0.00 43.77 4.40
367 368 2.218066 GGAGGATGCGGGTTCCTAA 58.782 57.895 0.00 0.00 43.75 2.69
368 369 3.965660 GGAGGATGCGGGTTCCTA 58.034 61.111 0.00 0.00 43.75 2.94
377 378 1.068885 CGTCTATCTGTCGGAGGATGC 60.069 57.143 4.33 0.00 0.00 3.91
378 379 1.068885 GCGTCTATCTGTCGGAGGATG 60.069 57.143 4.33 0.00 0.00 3.51
380 381 1.158484 CGCGTCTATCTGTCGGAGGA 61.158 60.000 0.00 0.00 0.00 3.71
381 382 1.280142 CGCGTCTATCTGTCGGAGG 59.720 63.158 0.00 0.00 0.00 4.30
382 383 1.369448 GCGCGTCTATCTGTCGGAG 60.369 63.158 8.43 0.00 0.00 4.63
383 384 1.374343 AAGCGCGTCTATCTGTCGGA 61.374 55.000 8.43 0.00 0.00 4.55
384 385 0.525668 AAAGCGCGTCTATCTGTCGG 60.526 55.000 8.43 0.00 0.00 4.79
385 386 0.840729 GAAAGCGCGTCTATCTGTCG 59.159 55.000 8.43 0.00 0.00 4.35
404 405 4.318974 CCATTCGCAAAGCAAAGAAAAAGG 60.319 41.667 0.00 0.00 0.00 3.11
406 407 4.437239 TCCATTCGCAAAGCAAAGAAAAA 58.563 34.783 0.00 0.00 0.00 1.94
415 416 1.333258 GCGTCTATCCATTCGCAAAGC 60.333 52.381 0.00 0.00 46.40 3.51
426 427 0.526954 TTCCGAAAGCGCGTCTATCC 60.527 55.000 8.43 0.00 35.83 2.59
444 445 8.132995 GGTAAATTTGGATCGATCGGTAAAATT 58.867 33.333 20.45 20.45 0.00 1.82
445 446 7.519328 CGGTAAATTTGGATCGATCGGTAAAAT 60.519 37.037 18.81 14.44 0.00 1.82
446 447 6.238157 CGGTAAATTTGGATCGATCGGTAAAA 60.238 38.462 18.81 12.76 0.00 1.52
447 448 5.234757 CGGTAAATTTGGATCGATCGGTAAA 59.765 40.000 18.81 18.08 0.00 2.01
448 449 4.746115 CGGTAAATTTGGATCGATCGGTAA 59.254 41.667 18.81 12.50 0.00 2.85
449 450 4.202141 ACGGTAAATTTGGATCGATCGGTA 60.202 41.667 18.81 6.85 0.00 4.02
450 451 3.128349 CGGTAAATTTGGATCGATCGGT 58.872 45.455 18.81 8.34 0.00 4.69
451 452 3.059868 CACGGTAAATTTGGATCGATCGG 60.060 47.826 18.81 0.00 0.00 4.18
452 453 3.603857 GCACGGTAAATTTGGATCGATCG 60.604 47.826 18.81 9.36 0.00 3.69
453 454 3.560068 AGCACGGTAAATTTGGATCGATC 59.440 43.478 17.36 17.36 0.00 3.69
454 455 3.541632 AGCACGGTAAATTTGGATCGAT 58.458 40.909 0.00 0.00 0.00 3.59
455 456 2.980568 AGCACGGTAAATTTGGATCGA 58.019 42.857 0.00 0.00 0.00 3.59
456 457 3.757745 AAGCACGGTAAATTTGGATCG 57.242 42.857 0.00 0.00 0.00 3.69
457 458 5.709966 AGAAAAGCACGGTAAATTTGGATC 58.290 37.500 0.00 0.00 0.00 3.36
458 459 5.722021 AGAAAAGCACGGTAAATTTGGAT 57.278 34.783 0.00 0.00 0.00 3.41
459 460 6.440436 GTTAGAAAAGCACGGTAAATTTGGA 58.560 36.000 0.00 0.00 0.00 3.53
460 461 5.631929 GGTTAGAAAAGCACGGTAAATTTGG 59.368 40.000 0.00 0.00 33.20 3.28
461 462 6.362283 CAGGTTAGAAAAGCACGGTAAATTTG 59.638 38.462 0.00 0.00 35.49 2.32
490 491 3.525537 CACATGTGCTAGTAGGAACCAG 58.474 50.000 13.94 0.00 0.00 4.00
504 505 4.156622 CTCGCTGCGGCACATGTG 62.157 66.667 21.83 21.83 38.60 3.21
519 520 3.775654 CCAGTCCCACCTCGGCTC 61.776 72.222 0.00 0.00 0.00 4.70
520 521 4.640690 ACCAGTCCCACCTCGGCT 62.641 66.667 0.00 0.00 0.00 5.52
521 522 4.394712 CACCAGTCCCACCTCGGC 62.395 72.222 0.00 0.00 0.00 5.54
523 524 4.394712 GGCACCAGTCCCACCTCG 62.395 72.222 0.00 0.00 0.00 4.63
544 545 3.058293 TCGTTTGTTTCTGCATGGATGAC 60.058 43.478 0.00 0.00 0.00 3.06
545 546 3.145286 TCGTTTGTTTCTGCATGGATGA 58.855 40.909 0.00 0.00 0.00 2.92
546 547 3.557577 TCGTTTGTTTCTGCATGGATG 57.442 42.857 0.00 0.00 0.00 3.51
547 548 3.181507 CGATCGTTTGTTTCTGCATGGAT 60.182 43.478 7.03 0.00 0.00 3.41
549 550 2.508867 CGATCGTTTGTTTCTGCATGG 58.491 47.619 7.03 0.00 0.00 3.66
550 551 1.906966 GCGATCGTTTGTTTCTGCATG 59.093 47.619 17.81 0.00 0.00 4.06
551 552 1.806542 AGCGATCGTTTGTTTCTGCAT 59.193 42.857 17.81 0.00 0.00 3.96
552 553 1.069973 CAGCGATCGTTTGTTTCTGCA 60.070 47.619 17.81 0.00 0.00 4.41
553 554 1.595609 CAGCGATCGTTTGTTTCTGC 58.404 50.000 17.81 0.00 0.00 4.26
554 555 1.195448 AGCAGCGATCGTTTGTTTCTG 59.805 47.619 17.81 13.81 0.00 3.02
555 556 1.195448 CAGCAGCGATCGTTTGTTTCT 59.805 47.619 17.81 0.00 0.00 2.52
558 879 1.207593 GCAGCAGCGATCGTTTGTT 59.792 52.632 17.81 10.77 0.00 2.83
559 880 2.863153 GCAGCAGCGATCGTTTGT 59.137 55.556 17.81 0.00 0.00 2.83
574 895 0.305617 CGATACTACTACACGGCGCA 59.694 55.000 10.83 0.00 0.00 6.09
577 898 5.791367 TCATATCGATACTACTACACGGC 57.209 43.478 7.41 0.00 0.00 5.68
593 914 3.365465 CCGTGAGTGACTCCGATCATATC 60.365 52.174 19.95 0.00 0.00 1.63
604 1441 3.681835 GCCCGACCGTGAGTGACT 61.682 66.667 0.00 0.00 0.00 3.41
685 1522 2.266055 CCGGTCTGGGAAGTGCTC 59.734 66.667 0.00 0.00 0.00 4.26
687 1524 3.842925 TTGCCGGTCTGGGAAGTGC 62.843 63.158 1.90 0.00 44.07 4.40
1646 2899 4.811024 ACTCTGAGTGTACAAATGTGTGTG 59.189 41.667 10.00 0.00 38.82 3.82
1724 3000 2.892425 GCCTCAGATCCGCCAACG 60.892 66.667 0.00 0.00 39.67 4.10
1961 3263 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1962 3264 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1963 3265 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1964 3266 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1965 3267 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
1966 3268 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1967 3269 1.304509 CCTGCACACACACACACACA 61.305 55.000 0.00 0.00 0.00 3.72
1968 3270 1.024046 TCCTGCACACACACACACAC 61.024 55.000 0.00 0.00 0.00 3.82
1969 3271 1.024046 GTCCTGCACACACACACACA 61.024 55.000 0.00 0.00 0.00 3.72
1970 3272 1.024046 TGTCCTGCACACACACACAC 61.024 55.000 0.00 0.00 0.00 3.82
1971 3273 0.322008 TTGTCCTGCACACACACACA 60.322 50.000 0.00 0.00 33.41 3.72
1972 3274 0.378257 CTTGTCCTGCACACACACAC 59.622 55.000 0.00 0.00 33.41 3.82
1973 3275 1.375853 GCTTGTCCTGCACACACACA 61.376 55.000 0.00 0.00 33.41 3.72
1974 3276 1.097547 AGCTTGTCCTGCACACACAC 61.098 55.000 0.00 0.00 33.41 3.82
1975 3277 1.096967 CAGCTTGTCCTGCACACACA 61.097 55.000 0.00 0.00 33.41 3.72
1976 3278 1.650912 CAGCTTGTCCTGCACACAC 59.349 57.895 0.00 0.00 33.41 3.82
1977 3279 4.146058 CAGCTTGTCCTGCACACA 57.854 55.556 0.00 0.00 33.41 3.72
2033 3335 6.346096 TGATTTTGGTTCTCCTAGGATTACG 58.654 40.000 13.12 0.00 34.23 3.18
2040 3349 8.742777 TGATTGAATTGATTTTGGTTCTCCTAG 58.257 33.333 0.00 0.00 34.23 3.02
2057 3366 2.485426 CGTGTGTGCCTCTGATTGAATT 59.515 45.455 0.00 0.00 0.00 2.17
2063 3372 0.534877 TTTGCGTGTGTGCCTCTGAT 60.535 50.000 0.00 0.00 0.00 2.90
2064 3373 0.534877 ATTTGCGTGTGTGCCTCTGA 60.535 50.000 0.00 0.00 0.00 3.27
2065 3374 0.311790 AATTTGCGTGTGTGCCTCTG 59.688 50.000 0.00 0.00 0.00 3.35
2066 3375 1.032014 AAATTTGCGTGTGTGCCTCT 58.968 45.000 0.00 0.00 0.00 3.69
2077 3386 6.863126 AGTTAGTTTCCAGATGAAAATTTGCG 59.137 34.615 0.00 0.00 44.30 4.85
2082 3392 7.004086 TCCACAGTTAGTTTCCAGATGAAAAT 58.996 34.615 0.00 0.00 44.30 1.82
2091 3401 4.698201 TGTCATCCACAGTTAGTTTCCA 57.302 40.909 0.00 0.00 0.00 3.53
2096 3406 3.753272 GTGCAATGTCATCCACAGTTAGT 59.247 43.478 10.22 0.00 38.85 2.24
2097 3407 3.752747 TGTGCAATGTCATCCACAGTTAG 59.247 43.478 12.68 0.00 38.85 2.34
2106 3416 4.034394 ACGTGTCATATGTGCAATGTCATC 59.966 41.667 1.90 0.00 0.00 2.92
2116 3426 2.603110 GTGCACCTACGTGTCATATGTG 59.397 50.000 5.22 0.00 42.39 3.21
2117 3427 2.232696 TGTGCACCTACGTGTCATATGT 59.767 45.455 15.69 0.00 42.39 2.29
2160 3470 0.393808 AATTACCATGCGGCGAAGGT 60.394 50.000 12.98 17.12 38.14 3.50
2171 3481 1.067516 GGCAGCGATGCAAATTACCAT 59.932 47.619 28.61 0.00 36.33 3.55
2191 3505 0.464870 AGCTCAGCAGACATAGGCAG 59.535 55.000 0.00 0.00 0.00 4.85
2197 3511 1.810794 GCATAGCAGCTCAGCAGACAT 60.811 52.381 12.81 0.00 36.85 3.06
2200 3514 0.468648 ATGCATAGCAGCTCAGCAGA 59.531 50.000 21.92 5.05 43.65 4.26
2220 3534 5.552870 ACACATTCAGGAAGTCAGTAAGT 57.447 39.130 0.00 0.00 0.00 2.24
2221 3535 6.867662 AAACACATTCAGGAAGTCAGTAAG 57.132 37.500 0.00 0.00 0.00 2.34
2228 3545 5.440610 AGAGTGAAAACACATTCAGGAAGT 58.559 37.500 0.00 0.00 39.84 3.01
2243 3560 3.149196 GCCCATCTGACAAAGAGTGAAA 58.851 45.455 0.00 0.00 38.67 2.69
2301 3622 2.031314 TAGCTTTGGCGCAACCGA 59.969 55.556 10.83 0.00 43.94 4.69
2312 3633 2.513897 GCCATCGCCGGTAGCTTT 60.514 61.111 1.90 0.00 40.39 3.51
2494 3821 8.440952 TGCTTTGCAGGTACCAATAAGGTAGT 62.441 42.308 15.94 0.00 42.89 2.73
2497 3824 3.499563 TGCTTTGCAGGTACCAATAAGGT 60.500 43.478 15.94 0.00 43.55 3.50
2498 3825 3.088532 TGCTTTGCAGGTACCAATAAGG 58.911 45.455 15.94 7.18 37.46 2.69
2499 3826 4.782019 TTGCTTTGCAGGTACCAATAAG 57.218 40.909 15.94 12.32 40.61 1.73
2500 3827 5.537300 TTTTGCTTTGCAGGTACCAATAA 57.463 34.783 15.94 2.54 40.61 1.40
2501 3828 5.537300 TTTTTGCTTTGCAGGTACCAATA 57.463 34.783 15.94 0.00 40.61 1.90
2502 3829 4.414337 TTTTTGCTTTGCAGGTACCAAT 57.586 36.364 15.94 0.00 40.61 3.16
2529 3856 7.176690 CACCAATGTCCAATAAGGTAGTCTTTT 59.823 37.037 0.00 0.00 39.02 2.27
2530 3857 6.659242 CACCAATGTCCAATAAGGTAGTCTTT 59.341 38.462 0.00 0.00 39.02 2.52
2531 3858 6.012858 TCACCAATGTCCAATAAGGTAGTCTT 60.013 38.462 0.00 0.00 39.02 3.01
2532 3859 5.487488 TCACCAATGTCCAATAAGGTAGTCT 59.513 40.000 0.00 0.00 39.02 3.24
2533 3860 5.741011 TCACCAATGTCCAATAAGGTAGTC 58.259 41.667 0.00 0.00 39.02 2.59
2534 3861 5.772393 TCACCAATGTCCAATAAGGTAGT 57.228 39.130 0.00 0.00 39.02 2.73
2535 3862 6.356556 TGATCACCAATGTCCAATAAGGTAG 58.643 40.000 0.00 0.00 39.02 3.18
2536 3863 6.320434 TGATCACCAATGTCCAATAAGGTA 57.680 37.500 0.00 0.00 39.02 3.08
2537 3864 5.191727 TGATCACCAATGTCCAATAAGGT 57.808 39.130 0.00 0.00 39.02 3.50
2538 3865 6.548622 AGATTGATCACCAATGTCCAATAAGG 59.451 38.462 0.00 0.00 45.00 2.69
2539 3866 7.423199 CAGATTGATCACCAATGTCCAATAAG 58.577 38.462 0.00 0.00 45.00 1.73
2540 3867 6.183360 GCAGATTGATCACCAATGTCCAATAA 60.183 38.462 0.00 0.00 45.00 1.40
2541 3868 5.300034 GCAGATTGATCACCAATGTCCAATA 59.700 40.000 0.00 0.00 45.00 1.90
2542 3869 4.098960 GCAGATTGATCACCAATGTCCAAT 59.901 41.667 0.00 0.00 45.00 3.16
2543 3870 3.444742 GCAGATTGATCACCAATGTCCAA 59.555 43.478 0.00 0.00 45.00 3.53
2544 3871 3.018856 GCAGATTGATCACCAATGTCCA 58.981 45.455 0.00 0.00 45.00 4.02
2545 3872 3.018856 TGCAGATTGATCACCAATGTCC 58.981 45.455 0.00 0.00 45.00 4.02
2546 3873 4.261489 GGATGCAGATTGATCACCAATGTC 60.261 45.833 0.00 0.00 45.00 3.06
2547 3874 3.635373 GGATGCAGATTGATCACCAATGT 59.365 43.478 0.00 0.00 45.00 2.71
2548 3875 3.889538 AGGATGCAGATTGATCACCAATG 59.110 43.478 0.00 0.00 45.00 2.82
2575 3902 7.090173 ACAACAGAACAATATGCAACAATACC 58.910 34.615 0.00 0.00 0.00 2.73
2618 3949 1.068741 GTCTTCCGTCGGGCTATCATT 59.931 52.381 12.29 0.00 0.00 2.57
2628 3959 1.134901 CTCCGTCTGTCTTCCGTCG 59.865 63.158 0.00 0.00 0.00 5.12
2667 4003 8.750298 TGCTACTAGTAAGTTTGAGCTAGATTT 58.250 33.333 11.69 0.00 36.30 2.17
2677 4013 4.473477 AGGCCTGCTACTAGTAAGTTTG 57.527 45.455 3.11 0.00 37.15 2.93
2726 4093 2.210116 CAAAATACGGGCGTCTGCTAT 58.790 47.619 0.00 0.00 42.25 2.97
2738 4109 3.866883 AATTGGGTGGAGCAAAATACG 57.133 42.857 0.00 0.00 0.00 3.06
2751 4122 5.705441 CACACAGTCATACAGTAAATTGGGT 59.295 40.000 0.00 0.00 0.00 4.51
2753 4124 6.402550 GCTCACACAGTCATACAGTAAATTGG 60.403 42.308 0.00 0.00 0.00 3.16
2760 4131 2.611473 GCTGCTCACACAGTCATACAGT 60.611 50.000 0.00 0.00 39.96 3.55
2824 4208 4.674475 ACACCGATGTTAAACAAAACACC 58.326 39.130 0.00 0.00 41.89 4.16
2842 4240 2.687935 TCAAAGCCAGAGTTTCAACACC 59.312 45.455 0.00 0.00 0.00 4.16
2857 4255 6.699575 AGTAATACCCATGTTGATCAAAGC 57.300 37.500 10.35 0.00 0.00 3.51
2859 4257 9.391006 GAAGTAGTAATACCCATGTTGATCAAA 57.609 33.333 10.35 1.23 0.00 2.69
2872 4278 8.976471 GCCTAAAAGAATCGAAGTAGTAATACC 58.024 37.037 0.00 0.00 0.00 2.73
2875 4281 8.880750 GTTGCCTAAAAGAATCGAAGTAGTAAT 58.119 33.333 0.00 0.00 0.00 1.89
2901 4312 5.343249 GTTGACTAATAAAGCTTGGCCATG 58.657 41.667 6.09 11.02 0.00 3.66
2902 4313 4.402474 GGTTGACTAATAAAGCTTGGCCAT 59.598 41.667 6.09 0.00 0.00 4.40
2903 4314 3.761752 GGTTGACTAATAAAGCTTGGCCA 59.238 43.478 0.00 0.00 0.00 5.36
2904 4315 3.761752 TGGTTGACTAATAAAGCTTGGCC 59.238 43.478 0.00 0.00 0.00 5.36
2962 4382 2.040544 CCGGGACACAATGCTCCAC 61.041 63.158 0.00 0.00 0.00 4.02
3016 4444 0.665835 TTGGTGTAACTTGCAAGGCG 59.334 50.000 29.18 7.03 36.74 5.52
3122 4642 6.016610 TCCAAAGTTTGAAGATAAACGGAAGG 60.017 38.462 17.33 0.00 43.51 3.46
3123 4643 6.966021 TCCAAAGTTTGAAGATAAACGGAAG 58.034 36.000 17.33 0.00 43.51 3.46
3127 4647 6.141685 CGGTTTCCAAAGTTTGAAGATAAACG 59.858 38.462 17.33 12.41 43.51 3.60
3133 4653 4.459685 TGAACGGTTTCCAAAGTTTGAAGA 59.540 37.500 17.33 3.89 0.00 2.87
3136 4656 3.759618 AGTGAACGGTTTCCAAAGTTTGA 59.240 39.130 17.33 0.64 0.00 2.69
3181 4701 5.488561 AGGGTTAGGTTAGTTCCCGATTTTA 59.511 40.000 0.00 0.00 42.57 1.52
3182 4702 4.290459 AGGGTTAGGTTAGTTCCCGATTTT 59.710 41.667 0.00 0.00 42.57 1.82
3183 4703 3.848377 AGGGTTAGGTTAGTTCCCGATTT 59.152 43.478 0.00 0.00 42.57 2.17
3184 4704 3.453717 GAGGGTTAGGTTAGTTCCCGATT 59.546 47.826 0.00 0.00 42.57 3.34
3185 4705 3.036819 GAGGGTTAGGTTAGTTCCCGAT 58.963 50.000 0.00 0.00 42.57 4.18
3186 4706 2.460669 GAGGGTTAGGTTAGTTCCCGA 58.539 52.381 0.00 0.00 42.57 5.14
3187 4707 1.483827 GGAGGGTTAGGTTAGTTCCCG 59.516 57.143 0.00 0.00 42.57 5.14
3188 4708 1.842562 GGGAGGGTTAGGTTAGTTCCC 59.157 57.143 0.00 0.00 36.35 3.97
3189 4709 2.770802 GAGGGAGGGTTAGGTTAGTTCC 59.229 54.545 0.00 0.00 0.00 3.62
3190 4710 2.429971 CGAGGGAGGGTTAGGTTAGTTC 59.570 54.545 0.00 0.00 0.00 3.01
3191 4711 2.043526 TCGAGGGAGGGTTAGGTTAGTT 59.956 50.000 0.00 0.00 0.00 2.24
3192 4712 1.642762 TCGAGGGAGGGTTAGGTTAGT 59.357 52.381 0.00 0.00 0.00 2.24
3193 4713 2.449137 TCGAGGGAGGGTTAGGTTAG 57.551 55.000 0.00 0.00 0.00 2.34
3194 4714 3.303049 GAATCGAGGGAGGGTTAGGTTA 58.697 50.000 0.00 0.00 0.00 2.85
3195 4715 2.117051 GAATCGAGGGAGGGTTAGGTT 58.883 52.381 0.00 0.00 0.00 3.50
3196 4716 1.691801 GGAATCGAGGGAGGGTTAGGT 60.692 57.143 0.00 0.00 0.00 3.08
3197 4717 1.049402 GGAATCGAGGGAGGGTTAGG 58.951 60.000 0.00 0.00 0.00 2.69
3198 4718 1.049402 GGGAATCGAGGGAGGGTTAG 58.951 60.000 0.00 0.00 0.00 2.34
3199 4719 0.399519 GGGGAATCGAGGGAGGGTTA 60.400 60.000 0.00 0.00 0.00 2.85
3200 4720 1.693103 GGGGAATCGAGGGAGGGTT 60.693 63.158 0.00 0.00 0.00 4.11
3201 4721 2.040779 GGGGAATCGAGGGAGGGT 60.041 66.667 0.00 0.00 0.00 4.34
3202 4722 3.234730 CGGGGAATCGAGGGAGGG 61.235 72.222 0.00 0.00 0.00 4.30
3203 4723 2.444140 ACGGGGAATCGAGGGAGG 60.444 66.667 0.00 0.00 0.00 4.30
3204 4724 2.058595 ACACGGGGAATCGAGGGAG 61.059 63.158 0.00 0.00 0.00 4.30
3205 4725 2.038329 ACACGGGGAATCGAGGGA 59.962 61.111 0.00 0.00 0.00 4.20
3206 4726 2.186903 CACACGGGGAATCGAGGG 59.813 66.667 0.00 0.00 0.00 4.30
3207 4727 2.186903 CCACACGGGGAATCGAGG 59.813 66.667 0.00 0.00 0.00 4.63
3208 4728 2.511600 GCCACACGGGGAATCGAG 60.512 66.667 0.00 0.00 37.04 4.04
3231 4751 3.632080 TAGCCCCGGTGTGGTGTG 61.632 66.667 0.00 0.00 35.15 3.82
3232 4752 3.633116 GTAGCCCCGGTGTGGTGT 61.633 66.667 0.00 0.00 35.15 4.16
3233 4753 4.404098 GGTAGCCCCGGTGTGGTG 62.404 72.222 0.00 0.00 35.15 4.17
3266 4786 4.902258 GAGGTAGGGGAGGGGGCC 62.902 77.778 0.00 0.00 0.00 5.80
3267 4787 4.902258 GGAGGTAGGGGAGGGGGC 62.902 77.778 0.00 0.00 0.00 5.80
3268 4788 4.558884 CGGAGGTAGGGGAGGGGG 62.559 77.778 0.00 0.00 0.00 5.40
3270 4790 4.159108 AGCGGAGGTAGGGGAGGG 62.159 72.222 0.00 0.00 35.08 4.30
3271 4791 2.840102 CAGCGGAGGTAGGGGAGG 60.840 72.222 0.00 0.00 35.08 4.30
3272 4792 1.686110 AACAGCGGAGGTAGGGGAG 60.686 63.158 0.00 0.00 35.08 4.30
3273 4793 1.987855 CAACAGCGGAGGTAGGGGA 60.988 63.158 0.00 0.00 35.08 4.81
3274 4794 2.584608 CAACAGCGGAGGTAGGGG 59.415 66.667 0.00 0.00 35.08 4.79
3275 4795 2.125106 GCAACAGCGGAGGTAGGG 60.125 66.667 0.00 0.00 35.08 3.53
3276 4796 2.125106 GGCAACAGCGGAGGTAGG 60.125 66.667 0.00 0.00 35.08 3.18
3277 4797 2.662596 TGGCAACAGCGGAGGTAG 59.337 61.111 0.00 0.00 46.17 3.18
3346 4866 4.624364 CACACCTGGCAGCGACCA 62.624 66.667 9.56 0.59 38.29 4.02
3348 4868 4.626081 ACCACACCTGGCAGCGAC 62.626 66.667 9.56 0.00 42.08 5.19
3349 4869 4.624364 CACCACACCTGGCAGCGA 62.624 66.667 9.56 0.00 42.08 4.93
3371 4891 2.399611 GAGCGAAAATGGGCGACG 59.600 61.111 0.00 0.00 0.00 5.12
3372 4892 1.305930 AAGGAGCGAAAATGGGCGAC 61.306 55.000 0.00 0.00 0.00 5.19
3373 4893 1.002624 AAGGAGCGAAAATGGGCGA 60.003 52.632 0.00 0.00 0.00 5.54
3374 4894 1.305219 TGAAGGAGCGAAAATGGGCG 61.305 55.000 0.00 0.00 0.00 6.13
3375 4895 0.453390 CTGAAGGAGCGAAAATGGGC 59.547 55.000 0.00 0.00 0.00 5.36
3376 4896 0.453390 GCTGAAGGAGCGAAAATGGG 59.547 55.000 0.00 0.00 38.15 4.00
3386 4906 2.435586 CCACCGCAGCTGAAGGAG 60.436 66.667 28.23 21.77 0.00 3.69
3387 4907 3.241530 ACCACCGCAGCTGAAGGA 61.242 61.111 28.23 0.00 0.00 3.36
3388 4908 3.052082 CACCACCGCAGCTGAAGG 61.052 66.667 20.43 21.55 0.00 3.46
3389 4909 2.281070 ACACCACCGCAGCTGAAG 60.281 61.111 20.43 10.10 0.00 3.02
3390 4910 2.591429 CACACCACCGCAGCTGAA 60.591 61.111 20.43 0.00 0.00 3.02
3391 4911 3.399105 AACACACCACCGCAGCTGA 62.399 57.895 20.43 0.00 0.00 4.26
3392 4912 2.901840 AACACACCACCGCAGCTG 60.902 61.111 10.11 10.11 0.00 4.24
3393 4913 2.901840 CAACACACCACCGCAGCT 60.902 61.111 0.00 0.00 0.00 4.24
3394 4914 3.209097 ACAACACACCACCGCAGC 61.209 61.111 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.