>input_sequence_52301
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----------------------ATGGGCCGCGGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCA
CCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGGGCGAGCTCGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTC
GTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTACTGCAGCCCCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCA
CGCGCTAGTCGA--------------------------------------------------------------------
-----------------------------------------------------GACAAGCGAGATTCTGCATTATGGTTT
TGATGATCATG----CCGATTACTGAATCTGCATCCCTTGCAAGT--------GCCATCTTTGGCATCGTCCTAGCCT--
----------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGTTTTGTTTGTGATCAAGTTAGCCAGATGATGCTTT
CGAATTTGGCTCTGATTTTAATCTTCTGCTCGGATTCAGATGCTTATGTTCATATTCAGTGTACAATATTACTATAGTTG
TGACATATTTATACTTCACCTGTCAATGTTAAGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAACCACAAGT
TCCAGTTCCAGTTCCAGTTCCAGGGGATAGATCATGATGATGATGATCAGGTCAATAAACA-----AACACATCCAGTCA
TGTACAACATACAGTACACACACACA---------------------T--TTGTACACTCAGAGTTAACTGCATGCTTGC
CTTTCTGATTGATCTATGCGATTCTTCGCACACAGCAACC---GTTGGCGGAT------------CTGAGGCGTGAGCGT
GACCGTCTCGAGGCCAGCGTGAGGAGGCAAACCGGAGAAGATCTGCCATTCGCCGCGACGGCGGCCGAACTGGACGATCT
GGAGCAGCGGCTGGAGTGCGTGCTGGGCGAAGTCCGTGAAATGAAGGTACACACA--TCCT---ACACT---GCACACAA
TTCTGTGTTGCTCACATGCCCAGTGTTTGAGTGAGCTGCA---TGACAGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCAGGACAAGCTGCTGGAGCAGCAGTTGGCCGAATCATACCACAAGGTAAGCGTAATC-------CTAGGAGAACCA
AAATCAATTCAATCAGAGGCACACAC-GCAAATTTTCATCTGGAAACTAACTGTGGATGACATTGCACATATGACACGTA
GGTGCACATCTTGGAGGACCAGAACAGCTACCTTCGCCGCATGGTAATTTGCATCG----CTGCCTGCCTATGTCTGCTG
AGCTGCTATGCATACT---TACTGACTTCCTGAATGTGTTTTCACTCT----TTGTCAGATGGGCGAGGAGGGGCAGCAA
CGTGCTGCTGTGGAGGCGTCATCGGTTGCGCCAAAGCTACCGGCGATGGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGA
GGAGGAATTGACGACACTGCGGCTGTGGCCGCGGCAGCTCCCCGATGTGTAA----------------------------
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---------------------------------------------------
>chr3A_1_TraesCS3A01G090900
ATTGGGCACTTTTCTAGGACAGTTTTGCTAGAACTCATCTAGATGAGATATAATTTGGTTTCATTCACCTTTTATAGTCA
TTGGATGTGATGTTATAAGATGCGTGTGTGCTGACGTGGGTTATTTTTGTTCTTGATTTTCAAGTGAATGAGACCAAATT
ATATCTCATTTAGATGAGTTCTAGGTACTCCCTTTTTAAGATGGTAAATTTTTTGCAAAAAAAAAAATAGTCATGGAGTG
ATAGCTTTTGAATTATTCTTTACAAAGTGTTAGTTTTTCGCCAGGGTGAGTCGAATTGTGGGCATGATGAAGGCATTGTT
AGAGATAGAGTGGAGGAGCAATGGAGCATGCATGCATGGCTTGGAGCTTAGGAACCCGCATCCTCCGACAGATAGACGCG
CTTTCCTTTTTCTTTGCTTTGCGAATGGATAGACGCGCTTTCGGAATTTTACCGATCGATCCAAATTTACCGTGCTTTTC
TAACCTGCTGCTGGTTCCTACTAGCACATGTGCCGCAGCGAGCCGAGGTGGGACTGGTGCCCTGGTCATCCATGCA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GAAA
CAAACGATCGCTGCTGCGCCGTGTAGTAGTATCG----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------ATATGATCGG
AGTCACTCACGGTCGGGCAACGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCGCCACCCGGAAGGAGGCGCGGTGACC
CGAGCACTTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCCGCAGAGGATCGGTGACCGGC
TTGCTGCTTTC----CGGTCGGGCGTGACGGGCGGACCTTTCACGGTATACTATCCATCA--------------------
-----------------------------------------------------------------CTAGTCGCCGGCGAA
ACTTCCTGGAAT----------TTTCGTCTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGG
AG-----AGGAGAGCACCACGG----------------------------------------------------------
--------------------------------------------------------------------------ACTG--
--------------ACTGACTTGCTGCTCGATCTCTTCTTCTTCTACCTAGCTTGGCTTCGGCGTCGATCACCAGTCCCC
GCGTTCCGAGCCAAGAGAGAAGATGGGCCGCGGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCA
CCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGGGCGAGCTCGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTC
GTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTACTGCAGCCCCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCA
CGCGCTAGTCGA--------------------------------------------------------------------
-----------------------------------------------------GACAAGCGAGATTCTGCATTATGGTTT
TGATGATCATG----CCGATTACTGAATCTGCATCCCTTGCAAGT--------GCCATCTTTGGCATCGTCCTAGCCT--
----------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGTTTTGTTTGTGATCAAGTTAGCCAGATGATGCTTT
CGAATTTGGCTCTGATTTTAATCTTCTGCTCGGATTCAGATGCTTATGTTCATATTCAGTGTACAATATTACTATAGTTG
TGACATATTTATACTTCACCTGTCAATGTTAAGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAACCACAAGT
TCCAGTTCCAGTTCCAGTTCCAGGGGATAGATCATGATGATGATGATCAGGTCAATAAACA-----AACACATCCAGTCA
TGTACAACATACAGTACACACACACA---------------------T--TTGTACACTCAGAGTTAACTGCATGCTTGC
CTTTCTGATTGATCTATGCGATTCTTCGCACACAGCAACC---GTTGGCGGAT------------CTGAGGCGTGAGCGT
GACCGTCTCGAGGCCAGCGTGAGGAGGCAAACCGGAGAAGATCTGCCATTCGCCGCGACGGCGGCCGAACTGGACGATCT
GGAGCAGCGGCTGGAGTGCGTGCTGGGCGAAGTCCGTGAAATGAAGGTACACACA--TCCT---ACACT---GCACACAA
TTCTGTGTTGCTCACATGCCCAGTGTTTGAGTGAGCTGCA---TGACAGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCAGGACAAGCTGCTGGAGCAGCAGTTGGCCGAATCATACCACAAGGTAAGCGTAATC-------CTAGGAGAACCA
AAATCAATTCAATCAGAGGCACACAC-GCAAATTTTCATCTGGAAACTAACTGTGGATGACATTGCACATATGACACGTA
GGTGCACATCTTGGAGGACCAGAACAGCTACCTTCGCCGCATGGTAATTTGCATCG----CTGCCTGCCTATGTCTGCTG
AGCTGCTATGCATACT---TACTGACTTCCTGAATGTGTTTTCACTCT----TTGTCAGATGGGCGAGGAGGGGCAGCAA
CGTGCTGCTGTGGAGGCGTCATCGGTTGCGCCAAAGCTACCGGCGATGGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGA
GGAGGAATTGACGACACTGCGGCTGTGGCCGCGGCAGCTCCCCGATGTGTAAGGCATAGGCCTCAAGCCCAGCCTGCGGC
TGTAAC------GATTAAGGTCGTGCGTATGAACACACTAGCTATTAGCCTATTAGATAGACTACCTTATTGGTACCTGC
AAAGCAAAAAAAAAAAAAAGACTACCTTATTGGACATTGGTGATCAATCTGCATCCTGACTGGTA----TTGTTGCATAT
TGTTCTGTTGTTTTGCAGGTCGAGGAGAAATGATAGCCCGACGGAAGACAGACGGAGACTATCATTGATTAG---TTAAC
--AAATCTAGCTCAAACTTACTAGTAGCAGGC------------CTA-------------TGTTCAGACGAC------AT
ATACGTCAACAAATAGCAGAC----GCCCGTATTTTGCTCCACCCAATTTACTGTATGACTGTGTGAGCAGCACTCCCCA
TA-------------TAGTATCACGTTGGTTCATATGAATTTACTGCGG--------------TGTTTTGTTTAACATCG
GTGTTGAAACTCTGGCT--------TTGATCAACATGGGTAT-T---ACTACTTCGATTCTTTTAGGC-AACATG-GCCA
AGCTTTATTAGTCAACC--------ATAGCTTCCTTCTTCCTTGCGGCCTTGCCACGAGAGGTGGAGCATTGTGT-----
---CCCGGCTGGCCTGGTGCTGCACCAAAACAGGTGTCGTACACGCCTTGCAAGTTACACCAAATTGGATGCGCAGCTAG
G-------------------------------------------------------------------------------
-------GTTCATGTTGCTTCGCTGAACTTGTTCTAGAGTTTTAGA----CTTTTAGGTAAC--AACTTAAACTTTGATT
TCCTTCCGTTTATCTTCAAACTTTGGAAACCGTTCACTTTACAATCATTCTTCTCATATATAAAATCGGGAACTAACCTA
ACCCTCCCTCGATTCCCCGTGTGGCGGCGCCACACCACACCGGGGCTACCCTTGCTGGCGCTCGAGGCCCCCTCCCCTAC
CTCCGCTGTTGCCAGAGGCCCCGTCGGGCAAAGCCCGCGCGACGTGGCGGCAGCGGGGCTCCTGCTGGTCGCTGCCAGGT
GTGGTGGCGGCGTCGCCCATTTTCGCTCCTTCAGCTGCGGTGGTGTGTTGT
>chr3D_343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGAGTATGCATGCGTGGCTTGGAGCAGGGAACCCCATACTT---GACAGATAGACGCG
CTTTAC-TTTTCTTTTCTTGGCGAATAGATAGACGCGCTTTGGG------------------AAATTTACCGTGCTTTTC
TAACCTGCTGGTTATTATATTTTTTTTAAGAATTTTTTCATTCATATCATGAATCAGTACAAAGAAGTTGACCCTTACAA
ACACACTGAAACGTAAATACAAAGGATCATGAACACCTAGAGTACCCTAAGACAACCATAACACAAGAAGATCTCCGGAG
CCCCGTGTCATCATCCCTGAATCTTAAAAGAAGACCCTTGCAGCAGAAGGATCTGCAACTAGTCGCAAGCAGGTCATCAT
CTTCGACCACGGTACAATTGCCGTCACGCTGCTTCCTCCTTTCTTGACACCAGCGCTGAGAGGGCATGGACATCAATCCA
ACACACCTGCAACAGCCGTCGCCATCTTTGGCTTTGAGTACCGCAAAAAGTGTCCCTTCCAGAAGGAAGAGAACTCGAGT
CATCCGACCGGTCCAGCACCGTGGCCGGGCCATCCGCCCGGACAAAGTAGGATCTCCCACCAGCATCAGCGCAGAGGAAG
GAGAAGAACAACAGCAGCAAATCATACCAACAAGGAAGAAGAAGGGTCTTCGTCTCCCTGCATCCATCGCCCATCTGAGG
ACCCAAACGGCCAGTGCCGATGGACCTACAGCCACCAAAGCCCGCGACCTCGACGAGACCCGGGGATCCCCAACTCCGCT
GGCTCCTAGACGAAGGCAAAAGCATCGCCTGACCGCGAACGGAGGCCGGAGAAACTTATTCTGACGCGACACCACCGCAA
CGGCCTCGGCAGCGTCTCCCTGAACCCTAACCCTACCACACACCTACCTAGCGAACAGACCCGAGGTTTCCCCTCCCTCC
CGCCGCCGGAGCGGCCGACGGATAGAGAGGGAACCGGCGGCGTCACCGGCGGCGCGCAAGGGAACCCTCGTCGCCTCCAT
GATCGCCTGTGCGATCCTACTTTTTCGCTGTGTTGGTTTGCAACGAACTCTCGCGCCCACGCGTCCGCCAATATGATCGG
GGTCACTCACGGTCGGGCAACGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCACGGCCCGGAAGGAGGCGCGGTGACC
CAACCACGTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCAGCAGAGGATCGGTGACTGGC
TTGCTGCTTTCCGGTCGGTCGGGCGTGACGGGCGGACCTTTCACAG--TACTATCCATCA--------------------
-----------------------------------------------------------------CTAGTCGCCGGCGAA
ACTTCCTGGAAT----------TTTCGTCTGTACGGCGGCACGTGGCCATCCGCAGGCCATCACCAGAGGAGATGAGAGG
AGAGGAGAGGAGAGCACACCCGAGTTCACAGTTTCAGTCTCAGTTGTTACAAACTTAG----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CCCC
GCGTCCCAAGCCAAGAGAGAAGATGGGCCGCGGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCA
CCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGCGCGAGCTCGCCGTGCTCTGCGGCGTGGACCACGGCCTCCTC
GTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTAGTGCGCCCCCAACACAAGGTCCGTCCTCCGCCCGTTCCGTCA
CGCGCTAACCCATTTGGATTTGCTTCTTCGTACGTACGCCCTATCTAG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CTATTGTTG
TGACATAATTATACTTGACTTGCCATTGTTAAGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAAACA-----
-CCAGTTCCAGTTCCAGGGCCAGGGGATACATCATGATGATC---ATCAGGTCAATAAACA-----AACACATCCAGTCA
TGTACAACATACA-----TACATACATACATTTGTACACTCAAGAGTTAGTT--------------AACTGCATGCTTGC
CT-TCTGATTGATCTATGCGATTCTTTGCACACAGCAGCAACCGTTGGCCGATATCATCGCAGGGCTGAGGTGTGAGCAT
GACCGTCTTGAGGCCAGCATGAGGAGGCAGACCGGAGAAGACCTGCCATCCGACGCGACGGCCGCGGAACTCGACGATCT
GGAGCAGCGGCTGGAGTTCATGCTGAGCAAAGTCCGTGAAATGCAGGTACACACG--TGCT---GCAGCACCGCACAAAA
TTCTGTGGTGCTCACATGCTCAGTGTTTGAGTGAACTCCA---TGACA--------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------TAAC
--GAATCTAGCTTAAACTTACTAGTAGCAGGCCAGTAGTGAGGGCTAAGGACCCGGCCTATGTTCAGACGAC------AT
ATACGTCAACAAGTAGCAGAG----GCCAGTATTTTGCTCCCCACAATTTCCTGTGTGA-------------------CA
TA-------------TAGTATCATGTTGGTTCATGTGAATTTACTGCAG--------------TG-TTTCTTTAACATCA
GTGTTGAAACTCTGACGTGAATGGATTGATCAAAACATGGGTACTGCACTACTATGATTTTTTTAGGC-AAATATCGCCA
AGCTTTATTAGTCAACCTGTCAACCATTGCTTCCTTCTTCCTTGTGGCCTTGTC----------GAGCATTGTGTCCCGG
GCTCCCGGCTGGCCTGGTGCTGCACCAAAACAGGTGTCGTACAGGCCTTGCAAGTCACACCAAATTCGATGCGCAGCTAG
G-------------------------------------------------------------------------------
-------GTTCATGTTGCTTCGCTGAACTTGTTCTAGAGTTTTAGA----CTTTTAGGTAAC--AACTTAAACTTTGATT
TGGTTCAGTTTACC-CCTAACTTTGGAAACCGTTCACTTTACAATCATTCTTCTCCTATA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3A_600
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------ATCGG
GGTCACTCACGGTCGGGCCGCGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCACGGCCCGGAAGGAGGCGCGGTGACC
CAACCACTTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCCGCAGAGGATCGGTGACCGGC
TTGCTGCTTTC----CGGTCGGGCGTGACGGGCGGACCTTTCACGGTATACTATCCATCA--------------------
-----------------------------------------------------------------CTAGTCGCCGGCGAA
ACTTCCTGGAAT----------TTTCGTCTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGG
AG-----AGGAGAGCACCACGG----------------------------------------------------------
--------------------------------------------------------------------------ACTG--
--------------ACTGACTTGCTGCTCGATCTCTTCTTCTTCTACCTAGCTTGGCTTCGGCGTCGATCACCAGTCCCC
GCGTTCCGAGCCAAGAGAGAAGATGGGCCGCGGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCA
CCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGGGCGAGCTCGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTC
GTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTACTGCAGCCCCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCA
CGCGCTAGTCGA--------------------------------------------------------------------
-----------------------------------------------------GACAAGCGAGATTCTGCATTATGGTTT
TGATGATCATG----CCGATTACTGAATCTGCATCCCTTGCAAGT--------GCCATCTTTGGCATCGTCCTAGCCT--
----------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGTTTTGTTTGTGATCAAGTTAGCCAGATGATGCTTT
CTAATTTGGCTCTGCTTTTAATCTTCTGCTCGGATTCAGATGCTTATGTTCATATTCAGTGTACAATATTACTATAGTTG
TGACATATTTATACTTCACCTGTCAATGTTAAGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAACCACAAGT
TCCAGTTCCAGTTCCAGTTCCAGGGGATAGATCATGATGATGATGATCAGGTCAATAAACA-----AACACATCCAGTCA
TGTACAACATACAGTACATACACACA---------------------T--TTGTACACTCAGAGTTAACTGCATGCTTGC
CTTTCTGATTGATCTATGCGATTCTTCGCACACAGCAACA---GTTGGCGGAT------------CTGAGGCGTGAGCGT
GACCGTCTCGAGGCCAGCGTGAGGAGGCAAACCGGAGAAGATCTGCCATTCGCCGCGACGGCGGCCGAACTGGACGATCT
GGAGCAGCGGCTGGAGTGCGTGCTGGGTGAAGTCCGTGAAATGAAGGTACACACA--TCCT---ACACT---GCACACAA
TTCTGTGTTGCTCACATGCCCAGTGTTTGAGTGAGCTGCA---TGACAGTCTCGTGTGTGTG------------------
----CAGGATAAGCTGCTGGAGCAGCAGTTGGACGAGTCATACCACAAGGTAAGTAGCGTAATCCTTTTTAGGAGAACCA
AAATCGATTCA----GAGGCATACAAAGCAATTTTGCATCCGGAATTGAACTGTGAATGACATTGTGCGTCTGACACGTA
GGTGCGCATCTTGCAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATTTGCATCT----CTGCTTGCCT------GCTA
AGCTGCTATGCATG-------CTGGCTTCCTGAATGTGTCTTCACTCT----TTGTCAGATGGGCCAGGAGGGGCAGCAA
TGTGCTGCTGTGGAGGCATCAGCTGTGGCGCCGAAGCTACCGGCGCCGGCGCTCGGGGGATCCTTCCCA------GAGGA
GGAGGAGTTGACGGCCCTGCGTTTGTGGCCGCGGCAGCTCCCCGACGTGTAAGGCATATGCCTGAAGCCCAGCCTGCAAC
TCC------GGTGATTAAGGTCGTGGGCATGGACACACTA----CTAGACTACCTTCCTGC-------------------
----AGAAAAAAAGACTGCCTT-------------ATTGGTGATCAATCTGCATCCTAACAAGACTGCCT-------TAT
TGTTCTGTTGTTTTGCAGGTCGAAGGGAGATGATAGCCTGACGGAACACAGACGGAGATTATAATTGACGATTAGTTATT
AAGAATCTAGCTTAAACTTACTAGTAGCAGGC------------CTAAGGATCCGACGTATGTTCAGAGAGCATGCATAT
ATACGTTAACAAGTAGCAGACGGACGCCAGTATTTTGCTCCGCACAATTTCCTGTACGACTGTGTGAGCAGCACTCCCAA
ATCCCCATATGTAAGTAGTGTCACGTTGGTTCATATGAATTTTACATCAGTGTTGGAGCTCTCTTTTTTTTTGAAAGAAA
GTGTTGGAGCTCTGACGTGAATGGATTGATCAACATGCATGGGT---ACTACTTCGATTTTTTAGGTATAAATATCGCTA
AGGTTTATTAGTCAACC--------ATAGCTTCCTTCTTCCGTGCAGCCTTGCCACGAGAGATGGAGCGTTGTGT-----
---GCCTGCTTGCCTGGTGCTGGGCTA-------------ACAGGCCCTGCAAGTTACACCAAATTGGATGCGCAGCGCA
GCTAGGGTTCTTCGCTAGAGAATGTGCCAATATTAACCCAAACTGGAAAATTACAAAAGCTATTCAAACAAAAAATTGGA
GGGGGGAGTTCATGTTGCTTCGCTGAACTTGTTCTAGAGTTTTAGATAGACTTTTAGGTAGTAAAACTTAAATTTCGATT
TGGTTCAGTTTACATCCAAACTTTGTAAACCGTTCAC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3B_600
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---------------------------------------------------------------------------ATCGG
GGTCACTCACTGTCGGGCCGCGCTTTCGCTTTACGCCGGAAATGGCAAGTTTCT-CGGCACGGAAGGAGGCGCGGTGACC
CAACCACTTCCCAGTCCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCAGGAGAGGATCGGTGAGTGGC
T---TGCTTTC----CGGTCGGCTGTGACGGGCGGACCGGTCATCGTCTCACCTGAACTGCTACTGCTACTGCTACAGTC
ACACGGTACACTGGAAGGGGCCGGGATCGCTGCCTCCTGGAAGCAGCGGGGTGGTC--AAAAGCTCTAGTCGCCGGCGAA
ACTTCCCGGAATTTGCACTACATTTCGACTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGG
AGAGGAGAGGAGAGCACACCCGAGTTCACAGTTTCAGTCTCAGTTGTTACAGCCTTTGCCCGGAAGGACCAAGAAGAAGA
AGAACAGTATACGTGCCACACAAGGTACATAC-AATGCTTCTCCTGCTACGAGTCCCCGCGTTCTCTTCTTCTTCTTCCA
GCACCATGCATGGAACTGACCTGCTGCTCGATCTCTTCTTCTTCCAGCTAGCTCGTCGTCGGCGTCGATCGC---TCCCC
GCGTTCCGAGCCA--AGAGAAGATGGGCCGCGGGAGGACGGAGATGAAGAGGATCCACAACGACGTGTCGCGCCGGGCCA
CCTTCGGCAAGCGCCGCCGCGGCCTGCTGAAGAAGGCGCGTGAGCTCGCCGTGCTCTGCGGCGTCGATCTCGGCCTCCTC
GTCTTCGACGATGACGGCGCCGGCAAGCTGTTCGACTACTGCAGCCCCAACACAAGGTCCGTCCTCCGTCCTTTCCGTCA
CGCGCTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ACCGGCCATCTTTGGCATCGTCCTAGCCA--
----------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGTTTTG----TGATCAAGTTAGACAGATGATGCTTT
CGAATTTAGCTCTGATTTTAATCTTCTGCTCAGATTCAGATGCTTATGCTCATATTTAGTGTACAATATACTATTAGTTG
TGACATGTTTATACCTGACTTGTCATTGTTAAGCTGGAGCGAGCTAATCGAGCGCTACGAGAGCATCACCAACCA-----
-CAAGTTCCAGTTCC------AGGGGATAAATCATGTTGATG---ATCAGGTCAACAAACA-----AACACCTCCAGTCA
TGTACAACATACA-----TACACACA---------------------T--TT--------------AACTGCATGCTTGC
ATGTCTGATTGATCTATGTGATTCTTTGCACACAGCAGCAACCGTTGGCGGATATCATCGCAGGGCTGAGGCGTGAGCAT
GACCGTCTGGAGGTCAGCGTGAGGAGGCAGACCGGAGAAGACCTGCCATCCGCCGCGACGGCGGCGGAACTCGATGATCT
GGAGCAGCGACTGGAGCGCGTGCTGGGTGAAGTTCGTGAAATGAAGGTACACACG--TGCTGCAGCACT---GCACAAAA
TTCTGTGTCGCTCACGTGCCCAGTGTTTGAGTGAACTGCAATATGACATTCTCGTGTGTGTG------------------
----CAGGACAAGCCGCTGGAGCAACAGTTGGACGAATCATACCACAAGGTAATTGTAATC-------TTAGGAGAACCA
AAATCGATTCA----GAGGCACACAAAGCAATTTTTCATCCGGAATTTAACTGTGAATGGCATTGTGCATCTGACACGTA
GGTGCACACCTTGGAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATTCGCATCG----CGCTGCC----TGCCTGCTA
AGCTGCTATTGTGGTTGTGTACTGGCTTCCTGAATGTGTCTTCACTCTTAATTTGTCAGATGGGCGAGGAGGGGCAGCAG
CGTGCTGCTGTGGAGGCGTCAGCTGTGGCGCCGAAGCTACCGGCGACGGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGA
GGAGGAATTGACAGCGCTACGGCTGTGGCCGCGGCAGCTCCCCGACGTGTAAGGCATAGGCCTGAAGCCCAGCCTGCACT
CTGGTGAATGGTGATTAAGGTCGTGCGTATGAACACACTAGCTACTAGACTACCTGTCTACCTTAT---TTGGTACCTGC
AAAGAGAAAAAAAGACTGCCTT-------------ATTGGTGATCAATCTGCATCCTGACTAGTAGCATTTGTTGCATAT
TTGTTC--TGCTTTGCAGGTCGAGGAGAGATGATAGCCTGACGGAAGACTGGTGGAGATTATAATTGATTAA---TTATA
AGGAATCTAGCTTAAACTTACTAGTAGCAGGC------------C-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3D_600
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATCGG
GGTCACTCACGGTCGGGCCGCGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCAA-GCCCGGAAGGAGGCGCGGTGACC
CAAACACGTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCAGCAGAGGATCGGTGACTGGC
T---TGCTTTC----CGGTCGGGCGTGACGGGCGGACCGGTCGCCGTATTAGCTGACTGA--ACTGCTACTGCTACAGTC
ACACGGTACACTGGAGGGGGTCGGGATCGCTGCCTCGTGGAAGCAGCAGGGTAGTCAAAAAAGCTATAGTCGCCGCCGAA
GCTTCCCGGAATTTGCACCGCATTTCGTCTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGG
AG-----AGGAGAGCACACCCGAGTTCACAGTTTCAGTCTCAGTTGTTACAGCCTTTGCCTGGAAGGACCAAGAAGAAGA
AGAACAGTATACGTGCCACACAAGGTACTTTAGAATGCTTCTCCTGCTACGATCGAGCCCCTTTTGCCGGCACCACGG--
--------------ACTGACTTGCTGCTCGATCCCTTCTTCTTCT-----------------------------------
--------AGCCA--AGAGAAGATGGGGCGCGGGAGGACGGAGATGAAGAAGATCCAGAACGATGTGTCACGGCGGGCCA
CCTTCGGCAAGCGCCGCCGCGGCCTGCTGAAGAAGGCGCACGAGCTCGCCGTACTCTGCGGCGTCGACCTCGGCCTCCTC
GTCTTCGACGACGACGGCGCCGGCAAGCTGTTCGACTACTGCGCCCCTAACACAAGGTCCGCCCTCCGCCCGTTCCGTCA
CGCCTA-----ATTTGGATTTGGTTCTAGCTAGCTTGTGAGGTGCCTCTCTGCTACCTTGTTGACCAACCTCCCAATTGA
TTCTTCTGTTTATAGTGCAAGTGTGGATGTGTGTTGTGATTCATTCCGGTCCGGACAAGCGAAACTCTGCATTATGGTTT
TGATGAACATATATACCGATTACTGAACCTGCATCCTTTGCGAGTGCCAACCGGCCATCTTTGACATCGTCCTAGCTAGG
CTCCTAGCCAGCCACAGTATTGGCAATTGGCATGCTCGAATTGGGTTTTG----TGATCAAGTTAGTCAGATGATGCTTT
TGAATTTAGCTCTGATCTTAATCTTCTGCTCAGATTCAGATGCTTATGTTCATATTCAGTCTACAA--------------
--ACATGTTTATACCTGACTTGTCATTTTTAAGCTGGAGCGAGCTAATTGAGCGCTACGAGAGCATCACCAAACA-----
-CCAGTTCCAGTTCCAGGGCCAGGGGATACATCATGATGATC---ATCAGGTCAATAAACAAAGAGAACACATCCAGTCA
TGTACAACATCCAGTACATACACTCA---------------------TAGTT--------------AACTGCATGCTTGC
CT-TCTGATTGGTCTATGCGATTCTTTGCACACAGCAGCAACCGTCGGCGGATATCATCGCAGGGCTGAGGCGTGAGGGT
GACCATCTGGAGGCCAGCGTGACGAGGCAGACCGGAGAAAACCTGTCATCCACTGCGACGGCGGCGGAACTCGACGAACT
GGAGCAGCGGCTGGAGTGCGTGCTGGGTAAAGTCCGTGAAACGAAGGTACACACACGTCCT---GCACT---GCACGAAA
--CTGTGGTGCTCACATGCTCAGTGTTTGAGTGAACTGCA---TGACTTTCTCGTGTATGTG------------------
----TAGGACAAGTTGCTGGAGCAGCAGTTGGGCGAATCACACCACAAGGTAAGTAGTGTAATCCTTTTTAGGAGAACCA
AAATCGATTCA----GAGGCACACAAAGCAATTTTTCATCCGGAATTTAATTGTGAATGACATTGTGCATATGACACGTA
GGTGCACATCTTGGAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATTGTGAATGACATCGCTGCC----TGCCTGCTG
AGCTGCTATGTA-------TACTGGCTTCCTGAATGTGTCTTCACTCT----TTGTCAGATGGGCGAGGAGGGGCAGCAA
CGTGCTGCTGTGGAGGCGTCCGCGGTGCCGCCGAAGCTA---------------------------CCGGAGGTGGAGGA
GGAGGAATTGACGACGCTGCGGCTGTGGCCGCGGCAGCTCCCCGACGTGTAAGGCATAGGCCTCAAGCCCAGCCTGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----S--------S-----------SSS-S-S---SS-SSSSSS--------------
----S-S--------S---S------S--------------S--SSSSSSSSSSSSSSSSSS------------------
----------S-SS--SSSSS-SSSSS-S-SSSSSSSS-SSS-SS-SSSS-S-SSS--S-SSS-SSSS-SSSSSSS----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------SS
--SS---S--S-S-S--S-----SSSSS-SSSSS----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------------------------S-SS----------------------
-S-S----------------------------------------------------------------------------
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------------------S-------------------------------------------------------------
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--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
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>forward_912
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------------GCTGCGCCGTGTAGTAGTAT------------------------------------------------
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>reverse_3268
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-------------------------------------------------------------------GTGTGTGTGTGTG
TGTGCAG-------------------------------------------------------------------------
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>forward_914
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--------------TGCGCCGTGTAGTAGTATCG----------------------------------------------
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>reverse_3374
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-------------CAGAGGCACACACGCAAATT-----------------------------------------------
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>forward_3272
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----------------------------------------------------CGTGTGTGTGTGTGTGTGTG--------
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>reverse_4719
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------------------------------------------------------------------------------TA
ACCCTCCCTCGATTCCCC--------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
