Multiple sequence alignment - TraesCS3A01G090300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G090300 chr3A 100.000 3378 0 0 1 3378 57480565 57483942 0.000000e+00 6239.0
1 TraesCS3A01G090300 chr3A 93.641 1887 69 18 600 2443 57718132 57716254 0.000000e+00 2772.0
2 TraesCS3A01G090300 chr3A 75.880 568 53 35 2476 3026 57716182 57715682 2.640000e-51 213.0
3 TraesCS3A01G090300 chr3A 84.956 113 11 2 3117 3229 57715677 57715571 3.560000e-20 110.0
4 TraesCS3A01G090300 chr3B 84.211 1406 93 45 1299 2626 71555065 71553711 0.000000e+00 1247.0
5 TraesCS3A01G090300 chr3B 92.949 312 17 3 913 1224 71555377 71555071 1.850000e-122 449.0
6 TraesCS3A01G090300 chr3B 89.711 311 16 9 500 798 71556043 71555737 1.900000e-102 383.0
7 TraesCS3A01G090300 chr3B 92.568 148 3 3 3233 3378 71545650 71545509 4.420000e-49 206.0
8 TraesCS3A01G090300 chr3B 76.104 385 34 23 2667 3026 71547300 71546949 7.550000e-32 148.0
9 TraesCS3A01G090300 chr3B 98.113 53 1 0 848 900 71555594 71555542 3.590000e-15 93.5
10 TraesCS3A01G090300 chr3D 83.171 1230 90 41 1231 2408 45922573 45923737 0.000000e+00 1016.0
11 TraesCS3A01G090300 chr3D 91.392 697 28 5 127 798 45921155 45921844 0.000000e+00 926.0
12 TraesCS3A01G090300 chr3D 85.771 506 38 17 1465 1947 45954584 45954090 3.890000e-139 505.0
13 TraesCS3A01G090300 chr3D 93.204 309 11 5 600 900 45955242 45954936 2.390000e-121 446.0
14 TraesCS3A01G090300 chr3D 96.016 251 10 0 975 1225 45954876 45954626 3.140000e-110 409.0
15 TraesCS3A01G090300 chr3D 91.250 240 16 5 987 1225 45922215 45922450 4.200000e-84 322.0
16 TraesCS3A01G090300 chr3D 95.270 148 3 1 3231 3378 45952322 45952179 7.290000e-57 231.0
17 TraesCS3A01G090300 chr3D 87.611 113 7 3 3117 3229 45953674 45953569 1.270000e-24 124.0
18 TraesCS3A01G090300 chr3D 100.000 56 0 0 848 903 45921987 45922042 1.660000e-18 104.0
19 TraesCS3A01G090300 chr3D 79.141 163 21 12 15 164 606358089 606358251 2.140000e-17 100.0
20 TraesCS3A01G090300 chr3D 100.000 42 0 0 3254 3295 45923737 45923778 1.000000e-10 78.7
21 TraesCS3A01G090300 chr3D 78.832 137 6 13 2593 2716 45954089 45953963 1.680000e-08 71.3
22 TraesCS3A01G090300 chr5A 80.645 155 15 5 17 169 547414985 547415126 4.610000e-19 106.0
23 TraesCS3A01G090300 chr5D 80.255 157 16 5 15 169 432875829 432875972 1.660000e-18 104.0
24 TraesCS3A01G090300 chr5D 88.525 61 7 0 15 75 432874924 432874984 1.300000e-09 75.0
25 TraesCS3A01G090300 chr7D 100.000 46 0 0 25 70 41597064 41597019 6.010000e-13 86.1
26 TraesCS3A01G090300 chr1B 96.970 33 1 0 126 158 25882712 25882680 4.710000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G090300 chr3A 57480565 57483942 3377 False 6239.000000 6239 100.000000 1 3378 1 chr3A.!!$F1 3377
1 TraesCS3A01G090300 chr3A 57715571 57718132 2561 True 1031.666667 2772 84.825667 600 3229 3 chr3A.!!$R1 2629
2 TraesCS3A01G090300 chr3B 71553711 71556043 2332 True 543.125000 1247 91.246000 500 2626 4 chr3B.!!$R2 2126
3 TraesCS3A01G090300 chr3D 45921155 45923778 2623 False 489.340000 1016 93.162600 127 3295 5 chr3D.!!$F2 3168
4 TraesCS3A01G090300 chr3D 45952179 45955242 3063 True 297.716667 505 89.450667 600 3378 6 chr3D.!!$R1 2778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1297 0.53087 CTACCTAGCTTGGCTTCGGC 60.531 60.0 14.6 0.0 40.44 5.54 F
1966 2521 0.31990 GTCTCGTGTGTGTGCAGGAT 60.320 55.0 0.0 0.0 33.58 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 2902 0.323908 CCGTCAACTCCTCCTCCTCT 60.324 60.0 0.0 0.0 0.0 3.69 R
3214 3912 0.106335 TCGCCAAGGTGAACGGTTTA 59.894 50.0 0.0 0.0 0.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.041354 GGATATTAATCTACATCTCCAAGGAGT 57.959 37.037 15.36 0.67 36.69 3.85
29 30 8.783660 ATTAATCTACATCTCCAAGGAGTACA 57.216 34.615 15.36 0.00 42.49 2.90
30 31 8.603898 TTAATCTACATCTCCAAGGAGTACAA 57.396 34.615 15.36 0.00 42.49 2.41
31 32 7.682787 AATCTACATCTCCAAGGAGTACAAT 57.317 36.000 15.36 0.00 42.49 2.71
32 33 6.471233 TCTACATCTCCAAGGAGTACAATG 57.529 41.667 15.36 13.31 42.49 2.82
33 34 6.194967 TCTACATCTCCAAGGAGTACAATGA 58.805 40.000 17.51 8.54 42.49 2.57
34 35 5.091261 ACATCTCCAAGGAGTACAATGAC 57.909 43.478 17.51 0.00 42.49 3.06
35 36 4.780021 ACATCTCCAAGGAGTACAATGACT 59.220 41.667 17.51 0.02 42.49 3.41
36 37 5.105146 ACATCTCCAAGGAGTACAATGACTC 60.105 44.000 17.51 4.87 44.39 3.36
44 45 3.609853 GAGTACAATGACTCCAATGCCA 58.390 45.455 0.00 0.00 40.07 4.92
45 46 4.202441 GAGTACAATGACTCCAATGCCAT 58.798 43.478 0.00 0.00 40.07 4.40
46 47 3.949754 AGTACAATGACTCCAATGCCATG 59.050 43.478 0.00 0.00 0.00 3.66
47 48 3.090210 ACAATGACTCCAATGCCATGA 57.910 42.857 0.00 0.00 0.00 3.07
48 49 3.021695 ACAATGACTCCAATGCCATGAG 58.978 45.455 0.00 0.00 0.00 2.90
49 50 3.284617 CAATGACTCCAATGCCATGAGA 58.715 45.455 0.00 0.00 0.00 3.27
50 51 3.657398 ATGACTCCAATGCCATGAGAA 57.343 42.857 0.00 0.00 0.00 2.87
51 52 3.438216 TGACTCCAATGCCATGAGAAA 57.562 42.857 0.00 0.00 0.00 2.52
52 53 3.084039 TGACTCCAATGCCATGAGAAAC 58.916 45.455 0.00 0.00 0.00 2.78
53 54 3.084039 GACTCCAATGCCATGAGAAACA 58.916 45.455 0.00 0.00 0.00 2.83
54 55 3.087031 ACTCCAATGCCATGAGAAACAG 58.913 45.455 0.00 0.00 0.00 3.16
55 56 3.245016 ACTCCAATGCCATGAGAAACAGA 60.245 43.478 0.00 0.00 0.00 3.41
56 57 3.349927 TCCAATGCCATGAGAAACAGAG 58.650 45.455 0.00 0.00 0.00 3.35
57 58 2.426024 CCAATGCCATGAGAAACAGAGG 59.574 50.000 0.00 0.00 0.00 3.69
58 59 1.760192 ATGCCATGAGAAACAGAGGC 58.240 50.000 0.00 0.00 46.71 4.70
59 60 3.254629 GCCATGAGAAACAGAGGCA 57.745 52.632 0.00 0.00 46.19 4.75
60 61 1.538047 GCCATGAGAAACAGAGGCAA 58.462 50.000 0.00 0.00 46.19 4.52
61 62 1.888512 GCCATGAGAAACAGAGGCAAA 59.111 47.619 0.00 0.00 46.19 3.68
62 63 2.094854 GCCATGAGAAACAGAGGCAAAG 60.095 50.000 0.00 0.00 46.19 2.77
63 64 2.490903 CCATGAGAAACAGAGGCAAAGG 59.509 50.000 0.00 0.00 0.00 3.11
64 65 2.276732 TGAGAAACAGAGGCAAAGGG 57.723 50.000 0.00 0.00 0.00 3.95
65 66 1.494721 TGAGAAACAGAGGCAAAGGGT 59.505 47.619 0.00 0.00 0.00 4.34
66 67 2.708861 TGAGAAACAGAGGCAAAGGGTA 59.291 45.455 0.00 0.00 0.00 3.69
67 68 3.137544 TGAGAAACAGAGGCAAAGGGTAA 59.862 43.478 0.00 0.00 0.00 2.85
68 69 3.487372 AGAAACAGAGGCAAAGGGTAAC 58.513 45.455 0.00 0.00 0.00 2.50
94 95 5.966636 CCAAGTTTTTGGCTAAACAGAAC 57.033 39.130 14.91 0.00 46.84 3.01
95 96 5.660460 CCAAGTTTTTGGCTAAACAGAACT 58.340 37.500 14.91 5.55 46.84 3.01
96 97 5.748630 CCAAGTTTTTGGCTAAACAGAACTC 59.251 40.000 10.41 0.00 46.84 3.01
97 98 5.515797 AGTTTTTGGCTAAACAGAACTCC 57.484 39.130 14.91 0.00 39.82 3.85
98 99 4.341235 AGTTTTTGGCTAAACAGAACTCCC 59.659 41.667 14.91 0.00 39.82 4.30
99 100 3.586470 TTTGGCTAAACAGAACTCCCA 57.414 42.857 0.00 0.00 0.00 4.37
100 101 2.561478 TGGCTAAACAGAACTCCCAC 57.439 50.000 0.00 0.00 0.00 4.61
101 102 2.054799 TGGCTAAACAGAACTCCCACT 58.945 47.619 0.00 0.00 0.00 4.00
102 103 3.244582 TGGCTAAACAGAACTCCCACTA 58.755 45.455 0.00 0.00 0.00 2.74
103 104 3.649023 TGGCTAAACAGAACTCCCACTAA 59.351 43.478 0.00 0.00 0.00 2.24
104 105 4.288626 TGGCTAAACAGAACTCCCACTAAT 59.711 41.667 0.00 0.00 0.00 1.73
105 106 5.486063 TGGCTAAACAGAACTCCCACTAATA 59.514 40.000 0.00 0.00 0.00 0.98
106 107 6.013206 TGGCTAAACAGAACTCCCACTAATAA 60.013 38.462 0.00 0.00 0.00 1.40
107 108 6.315642 GGCTAAACAGAACTCCCACTAATAAC 59.684 42.308 0.00 0.00 0.00 1.89
108 109 6.877322 GCTAAACAGAACTCCCACTAATAACA 59.123 38.462 0.00 0.00 0.00 2.41
109 110 7.389607 GCTAAACAGAACTCCCACTAATAACAA 59.610 37.037 0.00 0.00 0.00 2.83
110 111 9.280174 CTAAACAGAACTCCCACTAATAACAAA 57.720 33.333 0.00 0.00 0.00 2.83
111 112 7.745620 AACAGAACTCCCACTAATAACAAAG 57.254 36.000 0.00 0.00 0.00 2.77
112 113 5.705905 ACAGAACTCCCACTAATAACAAAGC 59.294 40.000 0.00 0.00 0.00 3.51
113 114 5.705441 CAGAACTCCCACTAATAACAAAGCA 59.295 40.000 0.00 0.00 0.00 3.91
114 115 6.206634 CAGAACTCCCACTAATAACAAAGCAA 59.793 38.462 0.00 0.00 0.00 3.91
115 116 6.948309 AGAACTCCCACTAATAACAAAGCAAT 59.052 34.615 0.00 0.00 0.00 3.56
116 117 6.759497 ACTCCCACTAATAACAAAGCAATC 57.241 37.500 0.00 0.00 0.00 2.67
117 118 6.245408 ACTCCCACTAATAACAAAGCAATCA 58.755 36.000 0.00 0.00 0.00 2.57
118 119 6.719370 ACTCCCACTAATAACAAAGCAATCAA 59.281 34.615 0.00 0.00 0.00 2.57
119 120 7.232534 ACTCCCACTAATAACAAAGCAATCAAA 59.767 33.333 0.00 0.00 0.00 2.69
120 121 7.601856 TCCCACTAATAACAAAGCAATCAAAG 58.398 34.615 0.00 0.00 0.00 2.77
121 122 7.450014 TCCCACTAATAACAAAGCAATCAAAGA 59.550 33.333 0.00 0.00 0.00 2.52
122 123 7.756722 CCCACTAATAACAAAGCAATCAAAGAG 59.243 37.037 0.00 0.00 0.00 2.85
123 124 8.514594 CCACTAATAACAAAGCAATCAAAGAGA 58.485 33.333 0.00 0.00 0.00 3.10
124 125 9.552114 CACTAATAACAAAGCAATCAAAGAGAG 57.448 33.333 0.00 0.00 0.00 3.20
125 126 9.507329 ACTAATAACAAAGCAATCAAAGAGAGA 57.493 29.630 0.00 0.00 0.00 3.10
198 199 6.377327 AGGAATTCGGCTATAACAACATTG 57.623 37.500 0.00 0.00 0.00 2.82
258 259 0.921896 AGCAGGTAGATGGCAATGGT 59.078 50.000 0.00 0.00 0.00 3.55
336 337 9.159364 ACCGATAAGATTAAAACTTAGTGAACC 57.841 33.333 9.95 0.00 34.13 3.62
338 339 9.079833 CGATAAGATTAAAACTTAGTGAACCGA 57.920 33.333 9.95 0.00 34.13 4.69
347 348 7.653767 AAACTTAGTGAACCGAGTATTTCAG 57.346 36.000 0.00 0.00 32.40 3.02
351 352 5.209818 AGTGAACCGAGTATTTCAGAACA 57.790 39.130 0.00 0.00 32.40 3.18
387 388 3.988517 GCAGTGTACTCTTAGTGTTGTCC 59.011 47.826 0.00 0.00 0.00 4.02
394 395 5.708877 ACTCTTAGTGTTGTCCTGTACTC 57.291 43.478 0.00 0.00 0.00 2.59
395 396 4.215827 ACTCTTAGTGTTGTCCTGTACTCG 59.784 45.833 0.00 0.00 0.00 4.18
405 406 3.824443 TGTCCTGTACTCGAAGTTGATCA 59.176 43.478 0.00 0.00 0.00 2.92
410 411 6.321435 TCCTGTACTCGAAGTTGATCATGTAT 59.679 38.462 0.00 0.00 0.00 2.29
412 413 7.168302 CCTGTACTCGAAGTTGATCATGTATTC 59.832 40.741 0.00 0.00 0.00 1.75
413 414 6.978659 TGTACTCGAAGTTGATCATGTATTCC 59.021 38.462 0.00 0.00 0.00 3.01
460 462 6.867816 GCAGATAAACATCAACAATTCCACAA 59.132 34.615 0.00 0.00 0.00 3.33
472 474 2.961536 TTCCACAATCTCCCCCTCTA 57.038 50.000 0.00 0.00 0.00 2.43
483 485 3.958798 TCTCCCCCTCTATTCTTTGTACG 59.041 47.826 0.00 0.00 0.00 3.67
552 555 3.874543 TGGGAAATTTACCGATCGACATG 59.125 43.478 18.66 1.54 32.07 3.21
553 556 3.303791 GGGAAATTTACCGATCGACATGC 60.304 47.826 18.66 0.59 0.00 4.06
554 557 3.560068 GGAAATTTACCGATCGACATGCT 59.440 43.478 18.66 0.00 0.00 3.79
944 1281 5.493133 TGCTCGATCTCTTCTTCTTCTAC 57.507 43.478 0.00 0.00 0.00 2.59
946 1283 4.578928 GCTCGATCTCTTCTTCTTCTACCT 59.421 45.833 0.00 0.00 0.00 3.08
948 1285 6.073222 GCTCGATCTCTTCTTCTTCTACCTAG 60.073 46.154 0.00 0.00 0.00 3.02
949 1286 5.761234 TCGATCTCTTCTTCTTCTACCTAGC 59.239 44.000 0.00 0.00 0.00 3.42
950 1287 5.763204 CGATCTCTTCTTCTTCTACCTAGCT 59.237 44.000 0.00 0.00 0.00 3.32
951 1288 6.262273 CGATCTCTTCTTCTTCTACCTAGCTT 59.738 42.308 0.00 0.00 0.00 3.74
952 1289 6.767524 TCTCTTCTTCTTCTACCTAGCTTG 57.232 41.667 0.00 0.00 0.00 4.01
953 1290 5.654650 TCTCTTCTTCTTCTACCTAGCTTGG 59.345 44.000 13.05 13.05 0.00 3.61
954 1291 4.160626 TCTTCTTCTTCTACCTAGCTTGGC 59.839 45.833 14.60 0.00 0.00 4.52
955 1292 3.714144 TCTTCTTCTACCTAGCTTGGCT 58.286 45.455 14.60 4.48 43.41 4.75
956 1293 4.097418 TCTTCTTCTACCTAGCTTGGCTT 58.903 43.478 14.60 0.00 40.44 4.35
957 1294 4.160626 TCTTCTTCTACCTAGCTTGGCTTC 59.839 45.833 14.60 0.00 40.44 3.86
958 1295 2.427453 TCTTCTACCTAGCTTGGCTTCG 59.573 50.000 14.60 0.56 40.44 3.79
959 1296 1.112113 TCTACCTAGCTTGGCTTCGG 58.888 55.000 14.60 2.12 40.44 4.30
960 1297 0.530870 CTACCTAGCTTGGCTTCGGC 60.531 60.000 14.60 0.00 40.44 5.54
961 1298 2.292794 TACCTAGCTTGGCTTCGGCG 62.293 60.000 14.60 0.00 40.44 6.46
962 1299 2.125512 CTAGCTTGGCTTCGGCGT 60.126 61.111 6.85 0.00 40.44 5.68
963 1300 2.125673 TAGCTTGGCTTCGGCGTC 60.126 61.111 6.85 0.00 40.44 5.19
964 1301 3.982372 TAGCTTGGCTTCGGCGTCG 62.982 63.158 1.15 1.15 40.44 5.12
966 1303 2.509336 CTTGGCTTCGGCGTCGAT 60.509 61.111 15.13 0.00 45.51 3.59
967 1304 2.508439 TTGGCTTCGGCGTCGATC 60.508 61.111 15.13 8.43 45.51 3.69
1394 1876 4.500499 AGTTAGCCAGATGATGCTTTCT 57.500 40.909 0.00 0.00 39.00 2.52
1407 1889 3.855689 TGCTTTCTAATTTGGCTCTGC 57.144 42.857 0.00 0.00 0.00 4.26
1966 2521 0.319900 GTCTCGTGTGTGTGCAGGAT 60.320 55.000 0.00 0.00 33.58 3.24
1993 2548 1.739562 GGAGCAGCAGTTGGACGAG 60.740 63.158 0.00 0.00 0.00 4.18
2054 2613 3.624777 ACCAAAATCGATTCAGAGGCAT 58.375 40.909 11.83 0.00 0.00 4.40
2101 2660 2.975410 ACTGTGAATGACATTGTGCG 57.025 45.000 5.14 0.00 32.74 5.34
2126 2685 2.100631 ACGTAGGTGCGCATCTTGC 61.101 57.895 30.92 20.36 40.69 4.01
2196 2774 1.535896 CCTGCTAAGCTGCTATGCATG 59.464 52.381 23.09 18.34 38.13 4.06
2237 2819 1.003580 TCACTCTTTGTCAGATGGGCC 59.996 52.381 0.00 0.00 0.00 5.80
2269 2851 2.702040 AATGTGCTGCTGTGGAGGCA 62.702 55.000 0.00 0.00 38.10 4.75
2341 2929 2.579738 GAGGAGGAGTTGACGGCC 59.420 66.667 0.00 0.00 0.00 6.13
2347 2935 4.681978 GAGTTGACGGCCCTGCGT 62.682 66.667 0.00 0.00 0.00 5.24
2348 2936 4.250305 AGTTGACGGCCCTGCGTT 62.250 61.111 0.00 0.00 0.00 4.84
2384 2972 0.391597 CCCCGACGTGTAAGGCATAT 59.608 55.000 0.00 0.00 0.00 1.78
2408 2996 3.875510 AAGCCCAGCCTGCAACTCC 62.876 63.158 0.00 0.00 0.00 3.85
2425 3019 0.533491 TCCGGTGATTAAGGTCGTGG 59.467 55.000 0.00 0.00 0.00 4.94
2427 3021 1.087771 CGGTGATTAAGGTCGTGGGC 61.088 60.000 0.00 0.00 0.00 5.36
2431 3025 1.308998 GATTAAGGTCGTGGGCATGG 58.691 55.000 0.00 0.00 0.00 3.66
2451 3049 5.252586 TGGACACACTACTAGACTACCTT 57.747 43.478 0.00 0.00 0.00 3.50
2452 3050 5.251764 TGGACACACTACTAGACTACCTTC 58.748 45.833 0.00 0.00 0.00 3.46
2497 3131 4.776435 TTGGTGATCAATCTGCATCCTA 57.224 40.909 0.00 0.00 0.00 2.94
2500 3134 4.080413 TGGTGATCAATCTGCATCCTAACA 60.080 41.667 0.00 0.00 0.00 2.41
2503 3137 5.819379 GTGATCAATCTGCATCCTAACAAGA 59.181 40.000 0.00 0.00 0.00 3.02
2504 3138 5.819379 TGATCAATCTGCATCCTAACAAGAC 59.181 40.000 0.00 0.00 0.00 3.01
2505 3139 5.426689 TCAATCTGCATCCTAACAAGACT 57.573 39.130 0.00 0.00 0.00 3.24
2506 3140 5.181009 TCAATCTGCATCCTAACAAGACTG 58.819 41.667 0.00 0.00 0.00 3.51
2507 3141 2.977914 TCTGCATCCTAACAAGACTGC 58.022 47.619 0.00 0.00 0.00 4.40
2508 3142 2.012673 CTGCATCCTAACAAGACTGCC 58.987 52.381 0.00 0.00 0.00 4.85
2536 3177 2.360844 TCTGTTGTTTTGCAGGTCGAA 58.639 42.857 0.00 0.00 33.81 3.71
2538 3179 1.403679 TGTTGTTTTGCAGGTCGAAGG 59.596 47.619 0.00 0.00 0.00 3.46
2559 3200 2.288518 GGAGATGATAGCCTGACGGAAC 60.289 54.545 0.00 0.00 0.00 3.62
2581 3222 7.042658 GGAACACAGACGGAGATTATAATTGAC 60.043 40.741 0.00 0.00 0.00 3.18
2582 3223 5.977725 ACACAGACGGAGATTATAATTGACG 59.022 40.000 0.00 7.15 0.00 4.35
2584 3225 6.863645 CACAGACGGAGATTATAATTGACGAT 59.136 38.462 17.62 7.76 0.00 3.73
2586 3227 8.573885 ACAGACGGAGATTATAATTGACGATTA 58.426 33.333 17.62 0.00 34.82 1.75
2587 3228 9.066939 CAGACGGAGATTATAATTGACGATTAG 57.933 37.037 17.62 6.35 33.87 1.73
2628 3294 7.632245 GCTTAAACTTACTAGTAGCAGGCCTAA 60.632 40.741 3.98 0.00 34.85 2.69
2630 3296 4.216708 ACTTACTAGTAGCAGGCCTAAGG 58.783 47.826 3.98 0.00 31.21 2.69
2631 3297 4.079327 ACTTACTAGTAGCAGGCCTAAGGA 60.079 45.833 3.98 0.00 31.21 3.36
2632 3298 3.621682 ACTAGTAGCAGGCCTAAGGAT 57.378 47.619 3.98 0.00 0.00 3.24
2633 3299 3.502356 ACTAGTAGCAGGCCTAAGGATC 58.498 50.000 3.98 0.00 0.00 3.36
2634 3300 1.723288 AGTAGCAGGCCTAAGGATCC 58.277 55.000 3.98 2.48 0.00 3.36
2635 3301 0.318762 GTAGCAGGCCTAAGGATCCG 59.681 60.000 3.98 0.00 0.00 4.18
2636 3302 0.187606 TAGCAGGCCTAAGGATCCGA 59.812 55.000 3.98 0.00 0.00 4.55
2637 3303 1.069935 GCAGGCCTAAGGATCCGAC 59.930 63.158 3.98 0.00 0.00 4.79
2638 3304 1.364171 CAGGCCTAAGGATCCGACG 59.636 63.158 3.98 0.00 0.00 5.12
2639 3305 1.076192 AGGCCTAAGGATCCGACGT 60.076 57.895 1.29 0.00 0.00 4.34
2640 3306 0.184451 AGGCCTAAGGATCCGACGTA 59.816 55.000 1.29 0.00 0.00 3.57
2641 3307 1.203025 AGGCCTAAGGATCCGACGTAT 60.203 52.381 1.29 0.00 0.00 3.06
2642 3308 1.067776 GGCCTAAGGATCCGACGTATG 60.068 57.143 5.98 0.00 0.00 2.39
2643 3309 1.612463 GCCTAAGGATCCGACGTATGT 59.388 52.381 5.98 0.00 0.00 2.29
2644 3310 2.035576 GCCTAAGGATCCGACGTATGTT 59.964 50.000 5.98 0.00 0.00 2.71
2645 3311 3.856267 GCCTAAGGATCCGACGTATGTTC 60.856 52.174 5.98 0.00 0.00 3.18
2646 3312 3.317149 CCTAAGGATCCGACGTATGTTCA 59.683 47.826 5.98 0.00 0.00 3.18
2647 3313 3.438297 AAGGATCCGACGTATGTTCAG 57.562 47.619 5.98 0.00 0.00 3.02
2648 3314 2.651455 AGGATCCGACGTATGTTCAGA 58.349 47.619 5.98 0.00 0.00 3.27
2649 3315 2.619177 AGGATCCGACGTATGTTCAGAG 59.381 50.000 5.98 0.00 0.00 3.35
2650 3316 2.617308 GGATCCGACGTATGTTCAGAGA 59.383 50.000 0.00 0.00 0.00 3.10
2651 3317 3.304123 GGATCCGACGTATGTTCAGAGAG 60.304 52.174 0.00 0.00 0.00 3.20
2652 3318 1.400846 TCCGACGTATGTTCAGAGAGC 59.599 52.381 0.00 0.00 0.00 4.09
2653 3319 1.132453 CCGACGTATGTTCAGAGAGCA 59.868 52.381 0.00 0.00 0.00 4.26
2654 3320 2.223595 CCGACGTATGTTCAGAGAGCAT 60.224 50.000 0.00 2.10 37.30 3.79
2655 3321 2.786027 CGACGTATGTTCAGAGAGCATG 59.214 50.000 6.61 0.00 34.57 4.06
2656 3322 2.537625 GACGTATGTTCAGAGAGCATGC 59.462 50.000 10.51 10.51 34.57 4.06
2657 3323 2.094026 ACGTATGTTCAGAGAGCATGCA 60.094 45.455 21.98 0.00 36.18 3.96
2658 3324 3.129109 CGTATGTTCAGAGAGCATGCAT 58.871 45.455 21.98 7.95 36.18 3.96
2667 3333 6.272822 TCAGAGAGCATGCATATATACGTT 57.727 37.500 21.98 0.00 0.00 3.99
2682 3348 8.838009 CATATATACGTTAACAAGTAGCAGACG 58.162 37.037 6.39 0.00 35.39 4.18
2683 3349 2.669364 ACGTTAACAAGTAGCAGACGG 58.331 47.619 6.39 0.00 33.74 4.79
2684 3350 2.294233 ACGTTAACAAGTAGCAGACGGA 59.706 45.455 6.39 0.00 33.74 4.69
2685 3351 2.660236 CGTTAACAAGTAGCAGACGGAC 59.340 50.000 6.39 0.00 0.00 4.79
2702 3368 0.373716 GACGCCAGTATTTTGCTCCG 59.626 55.000 0.00 0.00 0.00 4.63
2717 3383 1.130561 GCTCCGCACAATTTCCTGTAC 59.869 52.381 0.00 0.00 0.00 2.90
2741 3407 4.481195 GTGAGCAGCACTCCCAAA 57.519 55.556 0.00 0.00 45.61 3.28
2742 3408 2.952714 GTGAGCAGCACTCCCAAAT 58.047 52.632 0.00 0.00 45.61 2.32
2743 3409 0.807496 GTGAGCAGCACTCCCAAATC 59.193 55.000 0.00 0.00 45.61 2.17
2744 3410 0.322816 TGAGCAGCACTCCCAAATCC 60.323 55.000 0.00 0.00 45.61 3.01
2745 3411 1.000396 AGCAGCACTCCCAAATCCC 60.000 57.895 0.00 0.00 0.00 3.85
2746 3412 2.054453 GCAGCACTCCCAAATCCCC 61.054 63.158 0.00 0.00 0.00 4.81
2747 3413 1.383799 CAGCACTCCCAAATCCCCA 59.616 57.895 0.00 0.00 0.00 4.96
2748 3414 0.032813 CAGCACTCCCAAATCCCCAT 60.033 55.000 0.00 0.00 0.00 4.00
2749 3415 1.215173 CAGCACTCCCAAATCCCCATA 59.785 52.381 0.00 0.00 0.00 2.74
2750 3416 2.146998 AGCACTCCCAAATCCCCATAT 58.853 47.619 0.00 0.00 0.00 1.78
2751 3417 2.158415 AGCACTCCCAAATCCCCATATG 60.158 50.000 0.00 0.00 0.00 1.78
2752 3418 2.424812 GCACTCCCAAATCCCCATATGT 60.425 50.000 1.24 0.00 0.00 2.29
2753 3419 3.181434 GCACTCCCAAATCCCCATATGTA 60.181 47.826 1.24 0.00 0.00 2.29
2754 3420 4.691376 GCACTCCCAAATCCCCATATGTAA 60.691 45.833 1.24 0.00 0.00 2.41
2755 3421 5.072741 CACTCCCAAATCCCCATATGTAAG 58.927 45.833 1.24 0.00 0.00 2.34
2760 3426 6.003950 CCCAAATCCCCATATGTAAGTAGTG 58.996 44.000 1.24 0.00 0.00 2.74
2783 3449 6.861055 GTGTCACGTTGGTTCATATGAATTTT 59.139 34.615 20.65 1.08 36.33 1.82
2784 3450 8.018520 GTGTCACGTTGGTTCATATGAATTTTA 58.981 33.333 20.65 5.76 36.33 1.52
2785 3451 8.018520 TGTCACGTTGGTTCATATGAATTTTAC 58.981 33.333 20.65 14.48 36.33 2.01
2786 3452 8.018520 GTCACGTTGGTTCATATGAATTTTACA 58.981 33.333 20.65 12.01 36.33 2.41
2787 3453 8.735315 TCACGTTGGTTCATATGAATTTTACAT 58.265 29.630 20.65 4.05 36.33 2.29
2788 3454 9.009327 CACGTTGGTTCATATGAATTTTACATC 57.991 33.333 20.65 12.23 36.33 3.06
2789 3455 8.735315 ACGTTGGTTCATATGAATTTTACATCA 58.265 29.630 20.65 0.83 36.33 3.07
2790 3456 9.225201 CGTTGGTTCATATGAATTTTACATCAG 57.775 33.333 20.65 6.86 36.33 2.90
2793 3459 9.241919 TGGTTCATATGAATTTTACATCAGTGT 57.758 29.630 20.65 0.00 38.10 3.55
2797 3463 9.460019 TCATATGAATTTTACATCAGTGTTGGA 57.540 29.630 1.98 0.00 39.77 3.53
2798 3464 9.726232 CATATGAATTTTACATCAGTGTTGGAG 57.274 33.333 0.00 0.00 39.77 3.86
2799 3465 6.012658 TGAATTTTACATCAGTGTTGGAGC 57.987 37.500 6.17 0.00 39.77 4.70
2800 3466 5.769662 TGAATTTTACATCAGTGTTGGAGCT 59.230 36.000 6.17 0.00 39.77 4.09
2801 3467 5.886960 ATTTTACATCAGTGTTGGAGCTC 57.113 39.130 4.71 4.71 39.77 4.09
2802 3468 4.623932 TTTACATCAGTGTTGGAGCTCT 57.376 40.909 14.64 0.00 39.77 4.09
2803 3469 2.758736 ACATCAGTGTTGGAGCTCTC 57.241 50.000 14.64 4.40 34.01 3.20
2805 3471 2.636893 ACATCAGTGTTGGAGCTCTCTT 59.363 45.455 14.64 0.00 34.01 2.85
2858 3524 4.039703 CGTGAATGGATTGATCAACATGC 58.960 43.478 11.07 9.93 0.00 4.06
2859 3525 4.439016 CGTGAATGGATTGATCAACATGCA 60.439 41.667 11.07 12.45 0.00 3.96
2862 3528 4.600692 ATGGATTGATCAACATGCATGG 57.399 40.909 29.41 13.66 0.00 3.66
2863 3529 2.696187 TGGATTGATCAACATGCATGGG 59.304 45.455 29.41 20.66 0.00 4.00
2931 3608 2.939103 CAACCATAGCTTCCTTCTTCCG 59.061 50.000 0.00 0.00 0.00 4.30
2935 3612 0.973632 TAGCTTCCTTCTTCCGTGCA 59.026 50.000 0.00 0.00 0.00 4.57
2951 3628 2.659016 CAGCCTTGCCACGAGAGA 59.341 61.111 0.00 0.00 0.00 3.10
2958 3635 2.279120 GCCACGAGAGATGGAGCG 60.279 66.667 0.00 0.00 39.87 5.03
2965 3650 1.354040 GAGAGATGGAGCGTTGTGTG 58.646 55.000 0.00 0.00 0.00 3.82
2968 3653 1.672356 GATGGAGCGTTGTGTGCCT 60.672 57.895 0.00 0.00 0.00 4.75
2972 3657 2.516930 AGCGTTGTGTGCCTGCTT 60.517 55.556 0.00 0.00 30.27 3.91
2984 3669 3.371063 CTGCTTGCCTGGTGCTGG 61.371 66.667 0.00 0.00 42.00 4.85
2985 3670 4.980702 TGCTTGCCTGGTGCTGGG 62.981 66.667 0.00 0.00 42.00 4.45
3042 3740 4.094684 CGCAGCTAGGGTTCTTCG 57.905 61.111 0.00 0.00 0.00 3.79
3043 3741 2.167861 CGCAGCTAGGGTTCTTCGC 61.168 63.158 0.00 0.00 0.00 4.70
3044 3742 1.219393 GCAGCTAGGGTTCTTCGCT 59.781 57.895 0.00 0.00 42.08 4.93
3045 3743 0.460311 GCAGCTAGGGTTCTTCGCTA 59.540 55.000 0.00 0.00 39.95 4.26
3052 3750 3.810310 AGGGTTCTTCGCTAGAGAATG 57.190 47.619 9.48 4.66 37.57 2.67
3053 3751 3.100671 AGGGTTCTTCGCTAGAGAATGT 58.899 45.455 9.48 0.00 37.57 2.71
3054 3752 3.118956 AGGGTTCTTCGCTAGAGAATGTG 60.119 47.826 9.48 0.00 37.57 3.21
3055 3753 2.605366 GGTTCTTCGCTAGAGAATGTGC 59.395 50.000 9.48 1.43 33.51 4.57
3056 3754 2.586258 TCTTCGCTAGAGAATGTGCC 57.414 50.000 9.48 0.00 0.00 5.01
3057 3755 1.824852 TCTTCGCTAGAGAATGTGCCA 59.175 47.619 9.48 0.00 0.00 4.92
3058 3756 2.233676 TCTTCGCTAGAGAATGTGCCAA 59.766 45.455 9.48 0.00 0.00 4.52
3059 3757 2.988010 TCGCTAGAGAATGTGCCAAT 57.012 45.000 0.00 0.00 0.00 3.16
3060 3758 4.099419 TCTTCGCTAGAGAATGTGCCAATA 59.901 41.667 9.48 0.00 0.00 1.90
3061 3759 4.607293 TCGCTAGAGAATGTGCCAATAT 57.393 40.909 0.00 0.00 0.00 1.28
3062 3760 4.960938 TCGCTAGAGAATGTGCCAATATT 58.039 39.130 0.00 0.00 0.00 1.28
3063 3761 6.096673 TCGCTAGAGAATGTGCCAATATTA 57.903 37.500 0.00 0.00 0.00 0.98
3064 3762 6.521162 TCGCTAGAGAATGTGCCAATATTAA 58.479 36.000 0.00 0.00 0.00 1.40
3065 3763 6.423905 TCGCTAGAGAATGTGCCAATATTAAC 59.576 38.462 0.00 0.00 0.00 2.01
3066 3764 6.347725 CGCTAGAGAATGTGCCAATATTAACC 60.348 42.308 0.00 0.00 0.00 2.85
3067 3765 6.072452 GCTAGAGAATGTGCCAATATTAACCC 60.072 42.308 0.00 0.00 0.00 4.11
3068 3766 5.765510 AGAGAATGTGCCAATATTAACCCA 58.234 37.500 0.00 0.00 0.00 4.51
3069 3767 6.194235 AGAGAATGTGCCAATATTAACCCAA 58.806 36.000 0.00 0.00 0.00 4.12
3070 3768 6.667414 AGAGAATGTGCCAATATTAACCCAAA 59.333 34.615 0.00 0.00 0.00 3.28
3071 3769 6.639563 AGAATGTGCCAATATTAACCCAAAC 58.360 36.000 0.00 0.00 0.00 2.93
3072 3770 6.440328 AGAATGTGCCAATATTAACCCAAACT 59.560 34.615 0.00 0.00 0.00 2.66
3073 3771 5.398603 TGTGCCAATATTAACCCAAACTG 57.601 39.130 0.00 0.00 0.00 3.16
3074 3772 4.221703 TGTGCCAATATTAACCCAAACTGG 59.778 41.667 0.00 0.00 37.25 4.00
3075 3773 4.464597 GTGCCAATATTAACCCAAACTGGA 59.535 41.667 0.00 0.00 40.96 3.86
3076 3774 5.046950 GTGCCAATATTAACCCAAACTGGAA 60.047 40.000 0.00 0.00 40.96 3.53
3077 3775 5.544176 TGCCAATATTAACCCAAACTGGAAA 59.456 36.000 0.00 0.00 40.96 3.13
3078 3776 6.043243 TGCCAATATTAACCCAAACTGGAAAA 59.957 34.615 0.00 0.00 40.96 2.29
3079 3777 7.109501 GCCAATATTAACCCAAACTGGAAAAT 58.890 34.615 0.00 0.00 40.96 1.82
3080 3778 7.609918 GCCAATATTAACCCAAACTGGAAAATT 59.390 33.333 0.00 0.00 40.96 1.82
3086 3784 9.907229 ATTAACCCAAACTGGAAAATTACAAAA 57.093 25.926 0.00 0.00 40.96 2.44
3087 3785 7.857734 AACCCAAACTGGAAAATTACAAAAG 57.142 32.000 0.00 0.00 40.96 2.27
3088 3786 5.820423 ACCCAAACTGGAAAATTACAAAAGC 59.180 36.000 0.00 0.00 40.96 3.51
3089 3787 6.054941 CCCAAACTGGAAAATTACAAAAGCT 58.945 36.000 0.00 0.00 40.96 3.74
3090 3788 7.147637 ACCCAAACTGGAAAATTACAAAAGCTA 60.148 33.333 0.00 0.00 40.96 3.32
3091 3789 7.877612 CCCAAACTGGAAAATTACAAAAGCTAT 59.122 33.333 0.00 0.00 40.96 2.97
3092 3790 9.271828 CCAAACTGGAAAATTACAAAAGCTATT 57.728 29.630 0.00 0.00 40.96 1.73
3098 3796 9.823647 TGGAAAATTACAAAAGCTATTCAAACA 57.176 25.926 0.00 0.00 0.00 2.83
3155 3853 7.329717 CGCTGAACTTGTTCTAGAGTTTTAGAT 59.670 37.037 13.65 0.00 36.31 1.98
3156 3854 9.640963 GCTGAACTTGTTCTAGAGTTTTAGATA 57.359 33.333 13.65 0.00 36.31 1.98
3214 3912 6.153680 TGGTTCAGTTTACATCCAAACTTTGT 59.846 34.615 0.88 0.00 44.40 2.83
3226 3924 4.106909 CCAAACTTTGTAAACCGTTCACC 58.893 43.478 0.88 0.00 0.00 4.02
3229 3927 4.625972 ACTTTGTAAACCGTTCACCTTG 57.374 40.909 0.00 0.00 0.00 3.61
3250 5193 1.005557 GCGAATTCAGCAAGCTAGTCG 60.006 52.381 14.59 9.52 34.19 4.18
3253 5196 1.363744 ATTCAGCAAGCTAGTCGCAC 58.636 50.000 0.00 0.00 42.61 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.041354 ACTCCTTGGAGATGTAGATTAATATCC 57.959 37.037 22.10 0.00 35.22 2.59
3 4 9.877222 TGTACTCCTTGGAGATGTAGATTAATA 57.123 33.333 22.10 0.00 0.00 0.98
4 5 8.783660 TGTACTCCTTGGAGATGTAGATTAAT 57.216 34.615 22.10 0.00 0.00 1.40
5 6 8.603898 TTGTACTCCTTGGAGATGTAGATTAA 57.396 34.615 22.10 3.10 0.00 1.40
6 7 8.642432 CATTGTACTCCTTGGAGATGTAGATTA 58.358 37.037 22.10 0.15 0.00 1.75
7 8 7.345653 TCATTGTACTCCTTGGAGATGTAGATT 59.654 37.037 22.10 1.06 0.00 2.40
8 9 6.841229 TCATTGTACTCCTTGGAGATGTAGAT 59.159 38.462 22.10 6.48 0.00 1.98
9 10 6.096987 GTCATTGTACTCCTTGGAGATGTAGA 59.903 42.308 22.10 10.02 0.00 2.59
10 11 6.097554 AGTCATTGTACTCCTTGGAGATGTAG 59.902 42.308 22.10 8.14 0.00 2.74
11 12 5.958380 AGTCATTGTACTCCTTGGAGATGTA 59.042 40.000 22.10 3.70 0.00 2.29
12 13 4.780021 AGTCATTGTACTCCTTGGAGATGT 59.220 41.667 22.10 4.65 0.00 3.06
13 14 5.350504 AGTCATTGTACTCCTTGGAGATG 57.649 43.478 22.10 14.59 0.00 2.90
14 15 5.606348 GAGTCATTGTACTCCTTGGAGAT 57.394 43.478 22.10 9.66 40.06 2.75
23 24 3.609853 TGGCATTGGAGTCATTGTACTC 58.390 45.455 0.00 0.00 44.31 2.59
24 25 3.719268 TGGCATTGGAGTCATTGTACT 57.281 42.857 0.00 0.00 0.00 2.73
25 26 3.947196 TCATGGCATTGGAGTCATTGTAC 59.053 43.478 0.00 0.00 0.00 2.90
26 27 4.080413 TCTCATGGCATTGGAGTCATTGTA 60.080 41.667 12.86 0.00 0.00 2.41
27 28 3.021695 CTCATGGCATTGGAGTCATTGT 58.978 45.455 0.00 0.00 0.00 2.71
28 29 3.284617 TCTCATGGCATTGGAGTCATTG 58.715 45.455 12.86 0.00 0.00 2.82
29 30 3.657398 TCTCATGGCATTGGAGTCATT 57.343 42.857 12.86 0.00 0.00 2.57
30 31 3.657398 TTCTCATGGCATTGGAGTCAT 57.343 42.857 12.86 0.00 0.00 3.06
31 32 3.084039 GTTTCTCATGGCATTGGAGTCA 58.916 45.455 12.86 1.61 0.00 3.41
32 33 3.084039 TGTTTCTCATGGCATTGGAGTC 58.916 45.455 12.86 7.27 0.00 3.36
33 34 3.087031 CTGTTTCTCATGGCATTGGAGT 58.913 45.455 12.86 0.00 0.00 3.85
34 35 3.349927 TCTGTTTCTCATGGCATTGGAG 58.650 45.455 0.00 2.52 0.00 3.86
35 36 3.349927 CTCTGTTTCTCATGGCATTGGA 58.650 45.455 0.00 0.00 0.00 3.53
36 37 2.426024 CCTCTGTTTCTCATGGCATTGG 59.574 50.000 0.00 0.00 0.00 3.16
37 38 2.159282 GCCTCTGTTTCTCATGGCATTG 60.159 50.000 0.00 0.00 41.65 2.82
38 39 2.097825 GCCTCTGTTTCTCATGGCATT 58.902 47.619 0.00 0.00 41.65 3.56
39 40 1.005097 TGCCTCTGTTTCTCATGGCAT 59.995 47.619 0.00 0.00 44.34 4.40
40 41 0.401356 TGCCTCTGTTTCTCATGGCA 59.599 50.000 0.00 0.00 45.73 4.92
41 42 1.538047 TTGCCTCTGTTTCTCATGGC 58.462 50.000 0.00 0.00 42.04 4.40
42 43 2.490903 CCTTTGCCTCTGTTTCTCATGG 59.509 50.000 0.00 0.00 0.00 3.66
43 44 2.490903 CCCTTTGCCTCTGTTTCTCATG 59.509 50.000 0.00 0.00 0.00 3.07
44 45 2.108952 ACCCTTTGCCTCTGTTTCTCAT 59.891 45.455 0.00 0.00 0.00 2.90
45 46 1.494721 ACCCTTTGCCTCTGTTTCTCA 59.505 47.619 0.00 0.00 0.00 3.27
46 47 2.278332 ACCCTTTGCCTCTGTTTCTC 57.722 50.000 0.00 0.00 0.00 2.87
47 48 3.487372 GTTACCCTTTGCCTCTGTTTCT 58.513 45.455 0.00 0.00 0.00 2.52
48 49 2.557056 GGTTACCCTTTGCCTCTGTTTC 59.443 50.000 0.00 0.00 0.00 2.78
49 50 2.177016 AGGTTACCCTTTGCCTCTGTTT 59.823 45.455 0.00 0.00 38.13 2.83
50 51 1.780919 AGGTTACCCTTTGCCTCTGTT 59.219 47.619 0.00 0.00 38.13 3.16
51 52 1.073923 CAGGTTACCCTTTGCCTCTGT 59.926 52.381 0.00 0.00 39.89 3.41
52 53 1.826385 CAGGTTACCCTTTGCCTCTG 58.174 55.000 0.00 0.00 39.89 3.35
53 54 0.038310 GCAGGTTACCCTTTGCCTCT 59.962 55.000 0.00 0.00 39.89 3.69
54 55 0.965866 GGCAGGTTACCCTTTGCCTC 60.966 60.000 21.37 1.30 43.50 4.70
55 56 1.076727 GGCAGGTTACCCTTTGCCT 59.923 57.895 21.37 0.00 43.50 4.75
56 57 0.830023 TTGGCAGGTTACCCTTTGCC 60.830 55.000 21.72 21.72 45.86 4.52
57 58 0.603065 CTTGGCAGGTTACCCTTTGC 59.397 55.000 5.65 5.65 39.89 3.68
58 59 1.995376 ACTTGGCAGGTTACCCTTTG 58.005 50.000 0.00 0.00 39.89 2.77
59 60 2.767644 AACTTGGCAGGTTACCCTTT 57.232 45.000 13.82 0.00 39.89 3.11
60 61 2.767644 AAACTTGGCAGGTTACCCTT 57.232 45.000 15.77 0.00 39.89 3.95
61 62 2.698274 CAAAAACTTGGCAGGTTACCCT 59.302 45.455 15.77 0.00 44.02 4.34
62 63 2.224185 CCAAAAACTTGGCAGGTTACCC 60.224 50.000 15.77 0.00 35.00 3.69
63 64 3.106242 CCAAAAACTTGGCAGGTTACC 57.894 47.619 15.77 0.00 35.00 2.85
72 73 5.660460 AGTTCTGTTTAGCCAAAAACTTGG 58.340 37.500 0.00 0.00 44.82 3.61
73 74 5.748630 GGAGTTCTGTTTAGCCAAAAACTTG 59.251 40.000 8.01 2.97 39.57 3.16
74 75 5.163447 GGGAGTTCTGTTTAGCCAAAAACTT 60.163 40.000 8.01 0.00 39.57 2.66
75 76 4.341235 GGGAGTTCTGTTTAGCCAAAAACT 59.659 41.667 8.01 1.77 39.57 2.66
76 77 4.098807 TGGGAGTTCTGTTTAGCCAAAAAC 59.901 41.667 1.12 1.12 39.35 2.43
77 78 4.098807 GTGGGAGTTCTGTTTAGCCAAAAA 59.901 41.667 0.00 0.00 0.00 1.94
78 79 3.634910 GTGGGAGTTCTGTTTAGCCAAAA 59.365 43.478 0.00 0.00 0.00 2.44
79 80 3.117663 AGTGGGAGTTCTGTTTAGCCAAA 60.118 43.478 0.00 0.00 0.00 3.28
80 81 2.441750 AGTGGGAGTTCTGTTTAGCCAA 59.558 45.455 0.00 0.00 0.00 4.52
81 82 2.054799 AGTGGGAGTTCTGTTTAGCCA 58.945 47.619 0.00 0.00 0.00 4.75
82 83 2.861147 AGTGGGAGTTCTGTTTAGCC 57.139 50.000 0.00 0.00 0.00 3.93
83 84 6.877322 TGTTATTAGTGGGAGTTCTGTTTAGC 59.123 38.462 0.00 0.00 0.00 3.09
84 85 8.842358 TTGTTATTAGTGGGAGTTCTGTTTAG 57.158 34.615 0.00 0.00 0.00 1.85
85 86 9.280174 CTTTGTTATTAGTGGGAGTTCTGTTTA 57.720 33.333 0.00 0.00 0.00 2.01
86 87 7.255486 GCTTTGTTATTAGTGGGAGTTCTGTTT 60.255 37.037 0.00 0.00 0.00 2.83
87 88 6.206829 GCTTTGTTATTAGTGGGAGTTCTGTT 59.793 38.462 0.00 0.00 0.00 3.16
88 89 5.705905 GCTTTGTTATTAGTGGGAGTTCTGT 59.294 40.000 0.00 0.00 0.00 3.41
89 90 5.705441 TGCTTTGTTATTAGTGGGAGTTCTG 59.295 40.000 0.00 0.00 0.00 3.02
90 91 5.876357 TGCTTTGTTATTAGTGGGAGTTCT 58.124 37.500 0.00 0.00 0.00 3.01
91 92 6.569179 TTGCTTTGTTATTAGTGGGAGTTC 57.431 37.500 0.00 0.00 0.00 3.01
92 93 6.719370 TGATTGCTTTGTTATTAGTGGGAGTT 59.281 34.615 0.00 0.00 0.00 3.01
93 94 6.245408 TGATTGCTTTGTTATTAGTGGGAGT 58.755 36.000 0.00 0.00 0.00 3.85
94 95 6.757897 TGATTGCTTTGTTATTAGTGGGAG 57.242 37.500 0.00 0.00 0.00 4.30
95 96 7.450014 TCTTTGATTGCTTTGTTATTAGTGGGA 59.550 33.333 0.00 0.00 0.00 4.37
96 97 7.601856 TCTTTGATTGCTTTGTTATTAGTGGG 58.398 34.615 0.00 0.00 0.00 4.61
97 98 8.514594 TCTCTTTGATTGCTTTGTTATTAGTGG 58.485 33.333 0.00 0.00 0.00 4.00
98 99 9.552114 CTCTCTTTGATTGCTTTGTTATTAGTG 57.448 33.333 0.00 0.00 0.00 2.74
99 100 9.507329 TCTCTCTTTGATTGCTTTGTTATTAGT 57.493 29.630 0.00 0.00 0.00 2.24
102 103 8.302438 CCTTCTCTCTTTGATTGCTTTGTTATT 58.698 33.333 0.00 0.00 0.00 1.40
103 104 7.667219 TCCTTCTCTCTTTGATTGCTTTGTTAT 59.333 33.333 0.00 0.00 0.00 1.89
104 105 6.998074 TCCTTCTCTCTTTGATTGCTTTGTTA 59.002 34.615 0.00 0.00 0.00 2.41
105 106 5.829924 TCCTTCTCTCTTTGATTGCTTTGTT 59.170 36.000 0.00 0.00 0.00 2.83
106 107 5.380043 TCCTTCTCTCTTTGATTGCTTTGT 58.620 37.500 0.00 0.00 0.00 2.83
107 108 5.954296 TCCTTCTCTCTTTGATTGCTTTG 57.046 39.130 0.00 0.00 0.00 2.77
108 109 6.067350 AGTTCCTTCTCTCTTTGATTGCTTT 58.933 36.000 0.00 0.00 0.00 3.51
109 110 5.629125 AGTTCCTTCTCTCTTTGATTGCTT 58.371 37.500 0.00 0.00 0.00 3.91
110 111 5.240013 AGTTCCTTCTCTCTTTGATTGCT 57.760 39.130 0.00 0.00 0.00 3.91
111 112 5.956068 AAGTTCCTTCTCTCTTTGATTGC 57.044 39.130 0.00 0.00 0.00 3.56
112 113 6.264067 ACCAAAGTTCCTTCTCTCTTTGATTG 59.736 38.462 15.10 4.65 45.15 2.67
113 114 6.368805 ACCAAAGTTCCTTCTCTCTTTGATT 58.631 36.000 15.10 2.81 45.15 2.57
114 115 5.946486 ACCAAAGTTCCTTCTCTCTTTGAT 58.054 37.500 15.10 0.00 45.15 2.57
115 116 5.373812 ACCAAAGTTCCTTCTCTCTTTGA 57.626 39.130 15.10 0.00 45.15 2.69
116 117 5.734503 GCAACCAAAGTTCCTTCTCTCTTTG 60.735 44.000 8.82 8.82 43.30 2.77
117 118 4.339530 GCAACCAAAGTTCCTTCTCTCTTT 59.660 41.667 0.00 0.00 32.45 2.52
118 119 3.885901 GCAACCAAAGTTCCTTCTCTCTT 59.114 43.478 0.00 0.00 32.45 2.85
119 120 3.137360 AGCAACCAAAGTTCCTTCTCTCT 59.863 43.478 0.00 0.00 32.45 3.10
120 121 3.481453 AGCAACCAAAGTTCCTTCTCTC 58.519 45.455 0.00 0.00 32.45 3.20
121 122 3.584733 AGCAACCAAAGTTCCTTCTCT 57.415 42.857 0.00 0.00 32.45 3.10
122 123 4.390264 ACTAGCAACCAAAGTTCCTTCTC 58.610 43.478 0.00 0.00 32.45 2.87
123 124 4.439253 ACTAGCAACCAAAGTTCCTTCT 57.561 40.909 0.00 0.00 32.45 2.85
124 125 4.578928 TCAACTAGCAACCAAAGTTCCTTC 59.421 41.667 0.00 0.00 32.45 3.46
125 126 4.532834 TCAACTAGCAACCAAAGTTCCTT 58.467 39.130 0.00 0.00 32.45 3.36
137 138 6.015772 GGGAAATGGTTTAACTCAACTAGCAA 60.016 38.462 0.00 0.00 0.00 3.91
198 199 4.092968 CCCAGTTTTTGCGACTCTACATAC 59.907 45.833 0.00 0.00 0.00 2.39
258 259 7.484975 CAAGTGTCATTGGGTTTGTAAAACTA 58.515 34.615 3.14 0.00 0.00 2.24
312 313 9.079833 TCGGTTCACTAAGTTTTAATCTTATCG 57.920 33.333 0.00 0.00 0.00 2.92
314 315 9.939802 ACTCGGTTCACTAAGTTTTAATCTTAT 57.060 29.630 0.00 0.00 0.00 1.73
336 337 7.063898 AGTGACATTGATGTTCTGAAATACTCG 59.936 37.037 0.00 0.00 41.95 4.18
338 339 8.627208 AAGTGACATTGATGTTCTGAAATACT 57.373 30.769 0.00 0.00 41.95 2.12
347 348 5.869753 ACTGCTAAGTGACATTGATGTTC 57.130 39.130 0.00 0.00 41.95 3.18
376 377 4.581824 ACTTCGAGTACAGGACAACACTAA 59.418 41.667 0.00 0.00 0.00 2.24
381 382 3.973657 TCAACTTCGAGTACAGGACAAC 58.026 45.455 0.00 0.00 0.00 3.32
387 388 7.168302 GGAATACATGATCAACTTCGAGTACAG 59.832 40.741 0.00 0.00 0.00 2.74
405 406 8.325787 TCGTGGGCATATATTAAAGGAATACAT 58.674 33.333 0.00 0.00 32.72 2.29
410 411 5.556915 CCTCGTGGGCATATATTAAAGGAA 58.443 41.667 0.00 0.00 0.00 3.36
438 439 9.294030 GAGATTGTGGAATTGTTGATGTTTATC 57.706 33.333 0.00 0.00 0.00 1.75
460 462 4.589374 CGTACAAAGAATAGAGGGGGAGAT 59.411 45.833 0.00 0.00 0.00 2.75
472 474 2.450609 AGCACGTCCGTACAAAGAAT 57.549 45.000 0.00 0.00 0.00 2.40
483 485 2.492019 AGCAAAAGAAAAGCACGTCC 57.508 45.000 0.00 0.00 0.00 4.79
552 555 1.521423 CAGCGCACGGTAATAAGTAGC 59.479 52.381 11.47 0.00 0.00 3.58
553 556 2.124903 CCAGCGCACGGTAATAAGTAG 58.875 52.381 11.47 0.00 0.00 2.57
554 557 1.750206 TCCAGCGCACGGTAATAAGTA 59.250 47.619 11.47 0.00 0.00 2.24
944 1281 2.892425 CGCCGAAGCCAAGCTAGG 60.892 66.667 6.65 6.65 38.25 3.02
946 1283 2.125673 GACGCCGAAGCCAAGCTA 60.126 61.111 0.00 0.00 38.25 3.32
959 1296 2.202756 GGGACTGGTGATCGACGC 60.203 66.667 0.00 0.00 0.00 5.19
960 1297 2.494918 GGGGACTGGTGATCGACG 59.505 66.667 0.00 0.00 0.00 5.12
961 1298 2.494918 CGGGGACTGGTGATCGAC 59.505 66.667 0.00 0.00 0.00 4.20
962 1299 3.458163 GCGGGGACTGGTGATCGA 61.458 66.667 0.00 0.00 33.56 3.59
963 1300 4.873129 CGCGGGGACTGGTGATCG 62.873 72.222 0.00 0.00 33.56 3.69
964 1301 3.310860 AACGCGGGGACTGGTGATC 62.311 63.158 12.47 0.00 33.56 2.92
965 1302 3.310860 GAACGCGGGGACTGGTGAT 62.311 63.158 12.47 0.00 33.56 3.06
966 1303 3.998672 GAACGCGGGGACTGGTGA 61.999 66.667 12.47 0.00 33.56 4.02
1394 1876 8.246180 CAGAAGATTAAAAGCAGAGCCAAATTA 58.754 33.333 0.00 0.00 0.00 1.40
1407 1889 6.536582 TCTGAATCCGAGCAGAAGATTAAAAG 59.463 38.462 0.00 0.00 38.14 2.27
2014 2569 7.443259 TTTGGTTCTCCTAAAAAGGATTACG 57.557 36.000 0.00 0.00 37.34 3.18
2068 2627 2.083774 TCACAGTTCAATTCCGGATGC 58.916 47.619 4.15 0.00 0.00 3.91
2080 2639 3.228749 CGCACAATGTCATTCACAGTTC 58.771 45.455 0.00 0.00 38.85 3.01
2101 2660 2.087009 GCGCACCTACGTGTCAGAC 61.087 63.158 0.30 0.00 42.39 3.51
2118 2677 0.807496 GTTCTGGTCCTGCAAGATGC 59.193 55.000 0.00 0.00 45.29 3.91
2126 2685 0.689623 AGGAAGCTGTTCTGGTCCTG 59.310 55.000 0.00 0.00 32.72 3.86
2173 2740 1.671979 CATAGCAGCTTAGCAGGCAA 58.328 50.000 19.73 0.00 34.46 4.52
2196 2774 0.807496 GACACATTCAGGAAGCCAGC 59.193 55.000 0.00 0.00 0.00 4.85
2237 2819 2.050350 CACATTGCTGCCCCTCCTG 61.050 63.158 0.00 0.00 0.00 3.86
2252 2834 3.200329 ATGCCTCCACAGCAGCACA 62.200 57.895 0.00 0.00 44.90 4.57
2320 2902 0.323908 CCGTCAACTCCTCCTCCTCT 60.324 60.000 0.00 0.00 0.00 3.69
2325 2907 3.003763 GGGCCGTCAACTCCTCCT 61.004 66.667 0.00 0.00 0.00 3.69
2408 2996 1.087771 GCCCACGACCTTAATCACCG 61.088 60.000 0.00 0.00 0.00 4.94
2425 3019 2.761208 AGTCTAGTAGTGTGTCCATGCC 59.239 50.000 0.00 0.00 0.00 4.40
2427 3021 5.194432 AGGTAGTCTAGTAGTGTGTCCATG 58.806 45.833 0.00 0.00 0.00 3.66
2431 3025 5.354792 CAGGAAGGTAGTCTAGTAGTGTGTC 59.645 48.000 0.00 0.00 0.00 3.67
2497 3131 5.133221 ACAGAACAATAAGGCAGTCTTGTT 58.867 37.500 0.00 0.00 42.71 2.83
2500 3134 5.133221 ACAACAGAACAATAAGGCAGTCTT 58.867 37.500 0.00 0.00 39.40 3.01
2503 3137 5.852282 AAACAACAGAACAATAAGGCAGT 57.148 34.783 0.00 0.00 0.00 4.40
2504 3138 5.050837 GCAAAACAACAGAACAATAAGGCAG 60.051 40.000 0.00 0.00 0.00 4.85
2505 3139 4.808364 GCAAAACAACAGAACAATAAGGCA 59.192 37.500 0.00 0.00 0.00 4.75
2506 3140 4.808364 TGCAAAACAACAGAACAATAAGGC 59.192 37.500 0.00 0.00 0.00 4.35
2507 3141 5.463061 CCTGCAAAACAACAGAACAATAAGG 59.537 40.000 0.00 0.00 35.90 2.69
2508 3142 6.042143 ACCTGCAAAACAACAGAACAATAAG 58.958 36.000 0.00 0.00 35.90 1.73
2536 3177 1.626686 CGTCAGGCTATCATCTCCCT 58.373 55.000 0.00 0.00 0.00 4.20
2538 3179 1.621992 TCCGTCAGGCTATCATCTCC 58.378 55.000 0.00 0.00 37.47 3.71
2559 3200 6.206498 TCGTCAATTATAATCTCCGTCTGTG 58.794 40.000 0.00 0.00 0.00 3.66
2628 3294 2.619177 CTCTGAACATACGTCGGATCCT 59.381 50.000 10.75 0.00 0.00 3.24
2630 3296 3.850374 GCTCTCTGAACATACGTCGGATC 60.850 52.174 0.00 0.00 0.00 3.36
2631 3297 2.033550 GCTCTCTGAACATACGTCGGAT 59.966 50.000 0.00 0.00 0.00 4.18
2632 3298 1.400846 GCTCTCTGAACATACGTCGGA 59.599 52.381 0.00 0.00 0.00 4.55
2633 3299 1.132453 TGCTCTCTGAACATACGTCGG 59.868 52.381 0.00 0.00 0.00 4.79
2634 3300 2.544480 TGCTCTCTGAACATACGTCG 57.456 50.000 0.00 0.00 0.00 5.12
2635 3301 2.537625 GCATGCTCTCTGAACATACGTC 59.462 50.000 11.37 0.00 0.00 4.34
2636 3302 2.094026 TGCATGCTCTCTGAACATACGT 60.094 45.455 20.33 0.00 0.00 3.57
2637 3303 2.543641 TGCATGCTCTCTGAACATACG 58.456 47.619 20.33 0.00 0.00 3.06
2638 3304 9.029243 GTATATATGCATGCTCTCTGAACATAC 57.971 37.037 20.33 9.72 0.00 2.39
2639 3305 7.917505 CGTATATATGCATGCTCTCTGAACATA 59.082 37.037 20.33 5.16 0.00 2.29
2640 3306 6.755607 CGTATATATGCATGCTCTCTGAACAT 59.244 38.462 20.33 2.82 0.00 2.71
2641 3307 6.095377 CGTATATATGCATGCTCTCTGAACA 58.905 40.000 20.33 0.00 0.00 3.18
2642 3308 6.096036 ACGTATATATGCATGCTCTCTGAAC 58.904 40.000 20.33 8.16 0.00 3.18
2643 3309 6.272822 ACGTATATATGCATGCTCTCTGAA 57.727 37.500 20.33 0.00 0.00 3.02
2644 3310 5.904362 ACGTATATATGCATGCTCTCTGA 57.096 39.130 20.33 0.00 0.00 3.27
2645 3311 7.542130 TGTTAACGTATATATGCATGCTCTCTG 59.458 37.037 20.33 3.89 0.00 3.35
2646 3312 7.602753 TGTTAACGTATATATGCATGCTCTCT 58.397 34.615 20.33 3.63 0.00 3.10
2647 3313 7.812309 TGTTAACGTATATATGCATGCTCTC 57.188 36.000 20.33 1.84 0.00 3.20
2648 3314 7.872993 ACTTGTTAACGTATATATGCATGCTCT 59.127 33.333 20.33 8.90 0.00 4.09
2649 3315 8.018677 ACTTGTTAACGTATATATGCATGCTC 57.981 34.615 20.33 0.00 0.00 4.26
2650 3316 7.962964 ACTTGTTAACGTATATATGCATGCT 57.037 32.000 20.33 7.07 0.00 3.79
2651 3317 7.898309 GCTACTTGTTAACGTATATATGCATGC 59.102 37.037 11.82 11.82 0.00 4.06
2652 3318 8.921670 TGCTACTTGTTAACGTATATATGCATG 58.078 33.333 10.16 0.00 0.00 4.06
2653 3319 9.140286 CTGCTACTTGTTAACGTATATATGCAT 57.860 33.333 3.79 3.79 0.00 3.96
2654 3320 8.354426 TCTGCTACTTGTTAACGTATATATGCA 58.646 33.333 0.26 0.00 0.00 3.96
2655 3321 8.636843 GTCTGCTACTTGTTAACGTATATATGC 58.363 37.037 0.26 0.00 0.00 3.14
2656 3322 8.838009 CGTCTGCTACTTGTTAACGTATATATG 58.162 37.037 0.26 0.12 0.00 1.78
2657 3323 8.019669 CCGTCTGCTACTTGTTAACGTATATAT 58.980 37.037 0.26 0.00 0.00 0.86
2658 3324 7.226523 TCCGTCTGCTACTTGTTAACGTATATA 59.773 37.037 0.26 0.00 0.00 0.86
2667 3333 1.401931 GCGTCCGTCTGCTACTTGTTA 60.402 52.381 0.00 0.00 0.00 2.41
2682 3348 0.733150 GGAGCAAAATACTGGCGTCC 59.267 55.000 0.00 0.00 0.00 4.79
2683 3349 0.373716 CGGAGCAAAATACTGGCGTC 59.626 55.000 0.00 0.00 0.00 5.19
2684 3350 2.466867 CGGAGCAAAATACTGGCGT 58.533 52.632 0.00 0.00 0.00 5.68
2702 3368 2.806244 ACAGTCGTACAGGAAATTGTGC 59.194 45.455 0.00 0.00 32.56 4.57
2717 3383 3.238260 GTGCTGCTCACACAGTCG 58.762 61.111 0.00 0.00 44.98 4.18
2739 3405 7.280356 GTGACACTACTTACATATGGGGATTT 58.720 38.462 7.80 0.00 0.00 2.17
2741 3407 5.010719 CGTGACACTACTTACATATGGGGAT 59.989 44.000 7.80 0.00 0.00 3.85
2742 3408 4.340097 CGTGACACTACTTACATATGGGGA 59.660 45.833 7.80 0.00 0.00 4.81
2743 3409 4.098960 ACGTGACACTACTTACATATGGGG 59.901 45.833 7.80 0.00 0.00 4.96
2744 3410 5.258456 ACGTGACACTACTTACATATGGG 57.742 43.478 7.80 0.00 0.00 4.00
2745 3411 5.518847 CCAACGTGACACTACTTACATATGG 59.481 44.000 7.80 0.00 0.00 2.74
2746 3412 6.097356 ACCAACGTGACACTACTTACATATG 58.903 40.000 3.68 0.00 0.00 1.78
2747 3413 6.276832 ACCAACGTGACACTACTTACATAT 57.723 37.500 3.68 0.00 0.00 1.78
2748 3414 5.710513 ACCAACGTGACACTACTTACATA 57.289 39.130 3.68 0.00 0.00 2.29
2749 3415 4.595762 ACCAACGTGACACTACTTACAT 57.404 40.909 3.68 0.00 0.00 2.29
2750 3416 4.142204 TGAACCAACGTGACACTACTTACA 60.142 41.667 3.68 0.00 0.00 2.41
2751 3417 4.362279 TGAACCAACGTGACACTACTTAC 58.638 43.478 3.68 0.00 0.00 2.34
2752 3418 4.652421 TGAACCAACGTGACACTACTTA 57.348 40.909 3.68 0.00 0.00 2.24
2753 3419 3.530265 TGAACCAACGTGACACTACTT 57.470 42.857 3.68 0.00 0.00 2.24
2754 3420 3.746045 ATGAACCAACGTGACACTACT 57.254 42.857 3.68 0.00 0.00 2.57
2755 3421 5.165676 TCATATGAACCAACGTGACACTAC 58.834 41.667 1.98 0.00 0.00 2.73
2760 3426 8.018520 TGTAAAATTCATATGAACCAACGTGAC 58.981 33.333 20.19 10.56 36.80 3.67
2783 3449 3.435275 AGAGAGCTCCAACACTGATGTA 58.565 45.455 10.93 0.00 38.45 2.29
2784 3450 2.255406 AGAGAGCTCCAACACTGATGT 58.745 47.619 10.93 0.00 42.46 3.06
2785 3451 3.331478 AAGAGAGCTCCAACACTGATG 57.669 47.619 10.93 0.00 0.00 3.07
2786 3452 4.363991 AAAAGAGAGCTCCAACACTGAT 57.636 40.909 10.93 0.00 0.00 2.90
2787 3453 3.845781 AAAAGAGAGCTCCAACACTGA 57.154 42.857 10.93 0.00 0.00 3.41
2810 3476 4.949856 AGAGCTCCAACACTTTCTTTCAAA 59.050 37.500 10.93 0.00 0.00 2.69
2813 3479 4.024472 GTCAGAGCTCCAACACTTTCTTTC 60.024 45.833 10.93 0.00 0.00 2.62
2816 3482 2.546795 CGTCAGAGCTCCAACACTTTCT 60.547 50.000 10.93 0.00 0.00 2.52
2817 3483 1.795286 CGTCAGAGCTCCAACACTTTC 59.205 52.381 10.93 0.00 0.00 2.62
2818 3484 1.139058 ACGTCAGAGCTCCAACACTTT 59.861 47.619 10.93 0.00 0.00 2.66
2819 3485 0.753262 ACGTCAGAGCTCCAACACTT 59.247 50.000 10.93 0.00 0.00 3.16
2827 3493 2.593346 ATCCATTCACGTCAGAGCTC 57.407 50.000 5.27 5.27 0.00 4.09
2829 3495 2.621338 TCAATCCATTCACGTCAGAGC 58.379 47.619 0.00 0.00 0.00 4.09
2896 3565 9.609346 GAAGCTATGGTTGACTAATAAACCTTA 57.391 33.333 6.18 3.72 45.12 2.69
2900 3569 8.507524 AAGGAAGCTATGGTTGACTAATAAAC 57.492 34.615 0.00 0.00 0.00 2.01
2935 3612 1.220206 CATCTCTCGTGGCAAGGCT 59.780 57.895 0.00 0.00 0.00 4.58
2951 3628 1.968017 CAGGCACACAACGCTCCAT 60.968 57.895 0.00 0.00 0.00 3.41
2958 3635 2.028043 GGCAAGCAGGCACACAAC 59.972 61.111 1.97 0.00 43.51 3.32
2985 3670 0.895559 AACTTGCAGGGCCTGTTAGC 60.896 55.000 32.80 20.11 33.43 3.09
2987 3672 1.422024 TGTAACTTGCAGGGCCTGTTA 59.578 47.619 32.80 20.55 33.43 2.41
2996 3694 4.582701 TCCAATTTGGTGTAACTTGCAG 57.417 40.909 14.98 0.00 39.03 4.41
3026 3724 0.460311 TAGCGAAGAACCCTAGCTGC 59.540 55.000 0.00 0.00 37.20 5.25
3027 3725 2.025155 TCTAGCGAAGAACCCTAGCTG 58.975 52.381 0.00 0.00 37.20 4.24
3028 3726 2.092321 TCTCTAGCGAAGAACCCTAGCT 60.092 50.000 0.00 0.00 39.05 3.32
3030 3728 4.339814 ACATTCTCTAGCGAAGAACCCTAG 59.660 45.833 1.14 0.00 32.46 3.02
3031 3729 4.098044 CACATTCTCTAGCGAAGAACCCTA 59.902 45.833 1.14 0.00 32.46 3.53
3032 3730 3.100671 ACATTCTCTAGCGAAGAACCCT 58.899 45.455 1.14 0.00 32.46 4.34
3033 3731 3.190874 CACATTCTCTAGCGAAGAACCC 58.809 50.000 1.14 0.00 32.46 4.11
3034 3732 2.605366 GCACATTCTCTAGCGAAGAACC 59.395 50.000 1.14 0.00 32.46 3.62
3035 3733 2.605366 GGCACATTCTCTAGCGAAGAAC 59.395 50.000 1.14 0.00 32.46 3.01
3036 3734 2.233676 TGGCACATTCTCTAGCGAAGAA 59.766 45.455 1.14 0.00 32.46 2.52
3037 3735 1.824852 TGGCACATTCTCTAGCGAAGA 59.175 47.619 1.14 0.00 0.00 2.87
3038 3736 2.299993 TGGCACATTCTCTAGCGAAG 57.700 50.000 1.14 0.00 0.00 3.79
3039 3737 2.760634 TTGGCACATTCTCTAGCGAA 57.239 45.000 0.00 0.00 39.30 4.70
3040 3738 2.988010 ATTGGCACATTCTCTAGCGA 57.012 45.000 0.00 0.00 39.30 4.93
3041 3739 6.347725 GGTTAATATTGGCACATTCTCTAGCG 60.348 42.308 0.00 0.00 39.30 4.26
3042 3740 6.072452 GGGTTAATATTGGCACATTCTCTAGC 60.072 42.308 0.00 0.00 39.30 3.42
3043 3741 6.998074 TGGGTTAATATTGGCACATTCTCTAG 59.002 38.462 0.00 0.00 39.30 2.43
3044 3742 6.905736 TGGGTTAATATTGGCACATTCTCTA 58.094 36.000 0.00 0.00 39.30 2.43
3045 3743 5.765510 TGGGTTAATATTGGCACATTCTCT 58.234 37.500 0.00 0.00 39.30 3.10
3046 3744 6.463995 TTGGGTTAATATTGGCACATTCTC 57.536 37.500 0.00 0.00 39.30 2.87
3047 3745 6.440328 AGTTTGGGTTAATATTGGCACATTCT 59.560 34.615 0.00 0.00 39.30 2.40
3048 3746 6.534793 CAGTTTGGGTTAATATTGGCACATTC 59.465 38.462 0.00 0.00 39.30 2.67
3049 3747 6.405538 CAGTTTGGGTTAATATTGGCACATT 58.594 36.000 0.00 0.00 39.30 2.71
3050 3748 5.104982 CCAGTTTGGGTTAATATTGGCACAT 60.105 40.000 0.00 0.00 32.92 3.21
3051 3749 4.221703 CCAGTTTGGGTTAATATTGGCACA 59.778 41.667 0.00 0.00 32.67 4.57
3052 3750 4.464597 TCCAGTTTGGGTTAATATTGGCAC 59.535 41.667 0.00 0.00 38.32 5.01
3053 3751 4.678256 TCCAGTTTGGGTTAATATTGGCA 58.322 39.130 0.00 0.00 38.32 4.92
3054 3752 5.669164 TTCCAGTTTGGGTTAATATTGGC 57.331 39.130 0.00 0.00 38.32 4.52
3060 3758 9.907229 TTTTGTAATTTTCCAGTTTGGGTTAAT 57.093 25.926 0.00 0.00 38.32 1.40
3061 3759 9.384764 CTTTTGTAATTTTCCAGTTTGGGTTAA 57.615 29.630 0.00 0.00 38.32 2.01
3062 3760 7.496263 GCTTTTGTAATTTTCCAGTTTGGGTTA 59.504 33.333 0.00 0.00 38.32 2.85
3063 3761 6.317642 GCTTTTGTAATTTTCCAGTTTGGGTT 59.682 34.615 0.00 0.00 38.32 4.11
3064 3762 5.820423 GCTTTTGTAATTTTCCAGTTTGGGT 59.180 36.000 0.00 0.00 38.32 4.51
3065 3763 6.054941 AGCTTTTGTAATTTTCCAGTTTGGG 58.945 36.000 0.00 0.00 38.32 4.12
3066 3764 8.831715 ATAGCTTTTGTAATTTTCCAGTTTGG 57.168 30.769 0.00 0.00 39.43 3.28
3072 3770 9.823647 TGTTTGAATAGCTTTTGTAATTTTCCA 57.176 25.926 0.00 0.00 0.00 3.53
3110 3808 1.177401 GAAGCAACATGAACTCCCCC 58.823 55.000 0.00 0.00 0.00 5.40
3111 3809 0.804989 CGAAGCAACATGAACTCCCC 59.195 55.000 0.00 0.00 0.00 4.81
3171 3869 9.594478 ACTGAACCAAATCGAAATTTAAGTTTT 57.406 25.926 0.00 0.00 33.77 2.43
3172 3870 9.594478 AACTGAACCAAATCGAAATTTAAGTTT 57.406 25.926 0.00 0.00 33.77 2.66
3181 3879 6.263392 TGGATGTAAACTGAACCAAATCGAAA 59.737 34.615 0.00 0.00 0.00 3.46
3184 3882 5.621197 TGGATGTAAACTGAACCAAATCG 57.379 39.130 0.00 0.00 0.00 3.34
3202 3900 5.450826 GGTGAACGGTTTACAAAGTTTGGAT 60.451 40.000 19.45 2.40 34.12 3.41
3214 3912 0.106335 TCGCCAAGGTGAACGGTTTA 59.894 50.000 0.00 0.00 0.00 2.01
3226 3924 0.524862 AGCTTGCTGAATTCGCCAAG 59.475 50.000 23.25 23.25 0.00 3.61
3229 3927 1.328986 GACTAGCTTGCTGAATTCGCC 59.671 52.381 16.10 4.48 0.00 5.54
3250 5193 1.740025 GGCAACTCAAGTATGGAGTGC 59.260 52.381 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.