>input_sequence_53184
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--------------------------------------------------------ATGGGCCGCGGGAGGACGGAGATG
AAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGGGCGAGCT
CGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTACTGCAGCC
CCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCACGCGCTAGTCGA----------------------------------
--------------------------------------------------------------------------------
-------GACAAGCGAGATTCTGCATTATGGTTTTGATGATCATG----CCGATTACTGAATCTGCATCCCTTGCAAGT-
-------GCCATCTTTGGCATCGTCCTAGCCT------------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGT
TTTGTTTGTGATCAAGTTAGCCAGATGATGCTTTCTAATTTGGCTCTGCTTTTAATCTTCTGCTCGGATTCAGATGCTTA
TGTTCATATTCAGTGTACAATATTACTATAGTTGTGACATATTTATACTTCACCTGTCAATGTTAAGCTGGAGCGAGCTA
ATTGAGCGCTACGAGAGCATCACCAACCACAAGTTCCAGTTCCAGTTCCAGTTCCAGGGGATAGATCATGATGATGATGA
TCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACAGTACATACACACA--------------------
-T--TTGTACACTCAGAGTTAACTGCATGCTTGCCTTTCTGATTGATCTATGCGATTCTTCGCACACAGCAACA---GTT
GGCGGAT------------CTGAGGCGTGAGCGTGACCGTCTCGAGGCCAGCGTGAGGAGGCAAACCGGAGAAGATCTGC
CATTCGCCGCGACGGCGGCCGAACTGGACGATCTGGAGCAGCGGCTGGAGTGCGTGCTGGGTGAAGTCCGTGAAATGAAG
GTACACACA--TCCT---ACACTGCACACAATTCTGTGTTGCTCACATGCCCAGTGTTTGAGTGAGCTGC---ATGACAG
TCTCGTGTGTGTG----------------------CAGGATAAGCTGCTGGAGCAGCAGTTGGACGAGTCATACCACAAG
GTAAGTAGCGTAATCCTTTTTAGGAGAACCAAAATCGATTCA----GAGGCATACAAAGCAATTTTGCATCCGGAATTGA
ACTGTGAATGACATTGTGCGTCTGACACGTAGGTGCGCATCTTGCAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATT
TG------CAT--CTCTGCT----TGCCTGCTAAGCTGCTATGCA-------TGCTGGCTTCCTGAATGTGTCTTCACTC
TT----TGTCAGATGGGCCAGGAGGGGCAGCAATGTGCTGCTGTGGAGGCATCAGCTGTGGCGCCGAAGCTACCGGCGCC
GGCGCTCGGGGGATCCTTCCCAGAGGAGGAGGAG------TTGACGGCCCTGCGTTTGTGGCCGCGGCAGCTCCCCGACG
TGTAA---------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G090300
GGATATTAATCTACATCTCCAAGGAGTACAATGACTCCAATGCCATGAGAAACAGAGGCAAAGGGTAACCTGCCAAGTTT
TTGGCTAAACAGAACTCCCACTAATAACAAAGCAATCAAAGAGAGAAGGAACTTTGGTTGCTAGTTGAGTTAAACCATTT
CCCCGAGAGGAATATAGGAATTCGGCTATAACAACATTGTATGTAGAGTCGCAAAAACTGGGAATTGATCAAATACAGGA
GCAGGTAGATGGCAATGGTAGTTTTACAAACCCAATGACACTTGCTTGAGCTACAAATTATAAGTTGGAAACCGATAAGA
TTAAAACTTAGTGAACCGAGTATTTCAGAACATCAATGTCACTTAGCAGTGTACTCTTAGTGTTGTCCTGTACTCGAAGT
TGATCATGTATTCCTTTAATATATGCCCACGAGGCGCAGATAA-ACATCAACAATTCCACAATCTCCCCCTCTATTCTTT
GTACGGACGTGCTTTTCTTTTGCTTTTCTTTGTGAA-TGGATAGACGCGCTTTGGGAAATTTACCGATCGACATGCTA--
-CTTATTACCGTGCGCTGGACCGCT-------------------------GGTCACCGCCGTGTATCTTATCGGGGTCAC
TCACGGTCGGGCCGCGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCACGGCCCGGAAGGAGGCGCGGTGACCCAACCA
CTTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCCGCAGAGGATCGGTGACCGGCTTGCTG
CTTTC----CGGTCGGGCGTGACGGGCGGACCTTTCACGGTATACTATCCATCA--------------------------
-----------------------------------------------------------CTAGTCGCCGGCGAAACTTCC
TGGAAT----------TTTCGTCTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAG----
-AGGAGAGCACCACGG----------------------------------------------------------------
--------------------------------------------------------------------ACTG--------
--------ACTGACTTGCTGCTCGATCTCTTCTTCTTCT----------------------------------------A
CCTAGCTTGGCTTCGGCGTCGATCACCAGTCCCCGCGTTCCGAGCCAAGAGAGAAGATGGGCCGCGGGAGGACGGAGATG
AAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGGGCGAGCT
CGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTACTGCAGCC
CCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCACGCGCTAGTCGA----------------------------------
--------------------------------------------------------------------------------
-------GACAAGCGAGATTCTGCATTATGGTTTTGATGATCATG----CCGATTACTGAATCTGCATCCCTTGCAAGT-
-------GCCATCTTTGGCATCGTCCTAGCCT------------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGT
TTTGTTTGTGATCAAGTTAGCCAGATGATGCTTTCTAATTTGGCTCTGCTTTTAATCTTCTGCTCGGATTCAGATGCTTA
TGTTCATATTCAGTGTACAATATTACTATAGTTGTGACATATTTATACTTCACCTGTCAATGTTAAGCTGGAGCGAGCTA
ATTGAGCGCTACGAGAGCATCACCAACCACAAGTTCCAGTTCCAGTTCCAGTTCCAGGGGATAGATCATGATGATGATGA
TCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACAGTACATACACACA--------------------
-T--TTGTACACTCAGAGTTAACTGCATGCTTGCCTTTCTGATTGATCTATGCGATTCTTCGCACACAGCAACA---GTT
GGCGGAT------------CTGAGGCGTGAGCGTGACCGTCTCGAGGCCAGCGTGAGGAGGCAAACCGGAGAAGATCTGC
CATTCGCCGCGACGGCGGCCGAACTGGACGATCTGGAGCAGCGGCTGGAGTGCGTGCTGGGTGAAGTCCGTGAAATGAAG
GTACACACA--TCCT---ACACTGCACACAATTCTGTGTTGCTCACATGCCCAGTGTTTGAGTGAGCTGC---ATGACAG
TCTCGTGTGTGTG----------------------CAGGATAAGCTGCTGGAGCAGCAGTTGGACGAGTCATACCACAAG
GTAAGTAGCGTAATCCTTTTTAGGAGAACCAAAATCGATTCA----GAGGCATACAAAGCAATTTTGCATCCGGAATTGA
ACTGTGAATGACATTGTGCGTCTGACACGTAGGTGCGCATCTTGCAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATT
TG------CAT--CTCTGCT----TGCCTGCTAAGCTGCTATGCA-------TGCTGGCTTCCTGAATGTGTCTTCACTC
TT----TGTCAGATGGGCCAGGAGGGGCAGCAATGTGCTGCTGTGGAGGCATCAGCTGTGGCGCCGAAGCTACCGGCGCC
GGCGCTCGGGGGATCCTTCCCAGAGGAGGAGGAG------TTGACGGCCCTGCGTTTGTGGCCGCGGCAGCTCCCCGACG
TGTAAGGCATATGCCTGAAGCCCAGCCTGCAACTCC------GGTGATTAAGGTCGTGGGCATGGACACACTA----CTA
GACTACCTTCCTGC-----------------------AGAAAAAAAGACTGCCTT-------------ATTGGTGATCAA
TCTGCATCCTAACAAGACTGCCT-------TATTGTTCTGTTGTTTTGCAGGTCGAAGGGAGATGATAGCCTGACGGAAC
ACAGACGGAGATTATAATTGACGATTAGTTATTAAGAATCTAGCTTAAACTTACTAGTAGCAGGCC--------------
-----------TAAGGATCCGACGTATGTTCAGAGAGCATGCATATATACGTTAACAAGTAGCAGACGGACGCCAGTATT
TTGCTCCGCACAATTTCCTGTACGACTGTGTGAGCAGCACTCCCAAATCCCCATATGTAAGTAGTGTCACGTTGGTTCAT
ATGAATTTTACATCAGTGTTGGAGCTCTCTTTTTTTTTGAAAGAAAGTGTTGGAGCTCTGACGTGAATGGATTGATCAAC
ATGCATGGGT---ACTACTTCGATTTTTTAGGTATAAATATCGCTAAGGTTTATTAGTCAACC--------ATAGCTTCC
TTCTTCCGTGCAGCCTTGCCACGAGAGATGGAGCGTTGTGT--------GCCTGCTTGCCTGGTGCTGGGCTA-------
------ACAGGCCCTGCAAGTTACACCAAATTGGATGCGCAGCGCAGCTAGGGTTCTTCGCTAGAGAATGTGCCAATATT
AACCCAAACTGGAAAATTACAAAAGCTATTCAAACAAAAAATTGGAGGGGGGAGTTCATGTTGCTTCGCTGAACTTGTTC
TAGAGTTTTAGATAGACTTTTAGGTAGTAAAACTTAAATTTCGATTTGGTTCAGTTTACATCCAAACTTTGTAAACCGTT
CACCTTG-------------------------------------------------------------------------
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----------------------------------------------------GCGAATTCAGCAAGCTAGTCGCACTCCA
TACTTGAGTTGCCTGTGTGCATGTGGCTGCGGGTTGCCTGCCTGCTTCACGACGGCCGGCTTGGATCGATCACGCCTTAT
TTCCAGGAAGTCGTCCATTGTGATAGTTGATAAACTCGGG
>chr3D_127
--------------------------------------------------------------------------------
----------------------------------------------AGGAACTTTGGATGCTAGTTGAGTTAAACCATTT
CCCCGAGAGGAATATAGGAATTCGGCTATAACAACATTCTATGTAGAGTCGCAAAAACTGGGAATTGATCAAATACAGGA
GCAGGTAGATGGCAATGGCAGTTTTACAAACCCAATGACACTTGCTTGAGCTACAAATTATAAGTTGGAAACTGGTAAGA
TTAAAACTTAGTGAACTGGGTATTTCAAAACGTCAATGTCACTTAGCAGTGTACTCCTAGTATTGTCTTGTACTTCAAGT
TGATCGTGTACTGTTTTAATATATGCCCACGAGGCGCAAATAATACATCAACAATTCCACAGTCTCCCCCTCTGTTCTTT
GTACAGACGTGCTTTTCTTTTGCTTTTCTTTGTGAA-TGGATGGACGCGCTTTGGGAAATTTACCGATCGACAT---A--
-CTTATTACCGTGCGCTGGACCGCTGGCGCTGGTCACGCAGAAACACA-CGGTCACCGCCGTGTATCTTATCGGGGTCAC
TCACGGTCGGGCCGCGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCAA-GCCCGGAAGGAGGCGCGGTGACCCAAACA
CGTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCAGCAGAGGATCGGTGACTGGCT---TG
CTTTC----CGGTCGGGCGTGACGGGCGGACCGGTCGCCGTATTAGCTGACTGA--ACTGCTACTGCTACAGTCACACGG
TACACTGGAGGGGGTCGGGATCGCTGCCTCGTGGAAGCAGCAGGGTAGTCAAAAAAGCTATAGTCGCCGCCGAAGCTTCC
CGGAATTTGCACCGCATTTCGTCTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAG----
-AGGAGAGCACACCCGAGTTCACAGTTTCAGTCTCAGTTGTTACAGCCTTTGCCTGGAAGGACCAAGAAGAAGAAGAACA
GTATACGTGCCACACAAGGTACTTTAGAATGCTTCTCCTGCTACGATCGAGCCCCTTTTGCCGGCACCACGG--------
--------ACTGACTTGCTGCTCGATCCCTTCTTCTTCT----------------------------------------A
GCCA---------------------------------------------AGAGAAGATGGGGCGCGGGAGGACGGAGATG
AAGAAGATCCAGAACGATGTGTCACGGCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTGAAGAAGGCGCACGAGCT
CGCCGTACTCTGCGGCGTCGACCTCGGCCTCCTCGTCTTCGACGACGACGGCGCCGGCAAGCTGTTCGACTACTGCGCCC
CTAACACAAGGTCCGCCCTCCGCCCGTTCCGTCACGCCTA-----ATTTGGATTTGGTTCTAGCTAGCTTGTGAGGTGCC
TCTCTGCTACCTTGTTGACCAACCTCCCAATTGATTCTTCTGTTTATAGTGCAAGTGTGGATGTGTGTTGTGATTCATTC
CGGTCCGGACAAGCGAAACTCTGCATTATGGTTTTGATGAACATATATACCGATTACTGAACCTGCATCCTTTGCGAGTG
CCAACCGGCCATCTTTGACATCGTCCTAGCTAGGCTCCTAGCCAGCCACAGTATTGGCAATTGGCATGCTCGAATTGGGT
TTTG----TGATCAAGTTAGTCAGATGATGCTTTTGAATTTAGCTCTGATCTTAATCTTCTGCTCAGATTCAGATGCTTA
TGTTCATATTCAGTCTACAA----------------ACATGTTTATACCTGACTTGTCATTTTTAAGCTGGAGCGAGCTA
ATTGAGCGCTACGAGAGCATCACCAAACA------CCAGTTCCAGTTCCAGGGCCAGGGGATACATCATGATGATC---A
TCAGGTCAATAAACAAAGAGAACACATCCAGTCATGTACAACATCCAGTACATACACTCA--------------------
-TAGTT--------------AACTGCATGCTTGCCT-TCTGATTGGTCTATGCGATTCTTTGCACACAGCAGCAACCGTC
GGCGGATATCATCGCAGGGCTGAGGCGTGAGGGTGACCATCTGGAGGCCAGCGTGACGAGGCAGACCGGAGAAAACCTGT
CATCCACTGCGACGGCGGCGGAACTCGACGAACTGGAGCAGCGGCTGGAGTGCGTGCTGGGTAAAGTCCGTGAAACGAAG
GTACACACACGTCCT---GCACTGCACGAAA--CTGTGGTGCTCACATGCTCAGTGTTTGAGTGAACTGC---ATGACTT
TCTCGTGTATGTG----------------------TAGGACAAGTTGCTGGAGCAGCAGTTGGGCGAATCACACCACAAG
GTAAGTAGTGTAATCCTTTTTAGGAGAACCAAAATCGATTCA----GAGGCACACAAAGCAATTTTTCATCCGGAATTTA
ATTGTGAATGACATTGTGCATATGACACGTAGGTGCACATCTTGGAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATT
GTGAATGACAT--CGCTGCC----TGCCTGCTGAGCTGCTATGTA-------TACTGGCTTCCTGAATGTGTCTTCACTC
TT----TGTCAGATGGGCGAGGAGGGGCAGCAACGTGCTGCTGTGGAGGCGTCCGCGGTGCCGCCGAAGCTA--------
-------------------CCGGAGGTGGAGGAGGAGGAATTGACGACGCTGCGGCTGTGGCCGCGGCAGCTCCCCGACG
TGTAAGGCATAGGCCTCAAGCCCAGCCTGCAACTC---------------------------------------------
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----------------------------------------------------------------------------TCCA
TACTTGAGTTGCCTGTGTGCATGTGGCTGCGGGTTGC-------------------------------------------
----------------------------------------
>chr3B_500
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--------------------TGCTTTTCTTTGTGAAATGGATAGACGCGCTTTGGGAAATTTAACGATCGACAT---AGT
ACTTATTACCGT--------------GCGCTGGTCACGCAGAAACACAACGGTCACCGCGGTGTATCTTATCGGGGTCAC
TCACTGTCGGGCCGCGCTTTCGCTTTACGCCGGAAATGGCAAGTTTCT-CGGCACGGAAGGAGGCGCGGTGACCCAACCA
CTTCCCAGTCCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCAGGAGAGGATCGGTGAGTGGCT---TG
CTTTC----CGGTCGGCTGTGACGGGCGGACCGGTCATCGTCTCACCTGAACTGCTACTGCTACTGCTACAGTCACACGG
TACACTGGAAGGGGCCGGGATCGCTGCCTCCTGGAAGCAGCGGGGTGGTC--AAAAGCTCTAGTCGCCGGCGAAACTTCC
CGGAATTTGCACTACATTTCGACTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAGAGGA
GAGGAGAGCACACCCGAGTTCACAGTTTCAGTCTCAGTTGTTACAGCCTTTGCCCGGAAGGACCAAGAAGAAGAAGAACA
GTATACGTGCCACACAAGGTACATAC-AATGCTTCTCCTGCTACGAGTCCCCGCGTTCTCTTCTTCTTCTTCCAGCACCA
TGCATGGAACTGACCTGCTGCTCGATCTCTTCTTCTTCCAGCTAGCTCGTCGTCGGCGTCGATCGCTCCCCGCGTTCCGA
GCCA---------------------------------------------AGAGAAGATGGGCCGCGGGAGGACGGAGATG
AAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTGAAGAAGGCGCGTGAGCT
CGCCGTGCTCTGCGGCGTCGATCTCGGCCTCCTCGTCTTCGACGATGACGGCGCCGGCAAGCTGTTCGACTACTGCAGCC
CCAACACAAGGTCCGTCCTCCGTCCTTTCCGTCACGCGCTG---------------------------------------
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---ACCGGCCATCTTTGGCATCGTCCTAGCCA------------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGT
TTTG----TGATCAAGTTAGACAGATGATGCTTTCGAATTTAGCTCTGATTTTAATCTTCTGCTCAGATTCAGATGCTTA
TGCTCATATTTAGTGTACAATATACTATTAGTTGTGACATGTTTATACCTGACTTGTCATTGTTAAGCTGGAGCGAGCTA
ATCGAGCGCTACGAGAGCATCACCAACCA------CAAGTTCCAGTTCC------AGGGGATAAATCATGTTGATG---A
TCAGGTCAACAAACA-----AACACCTCCAGTCATGTACAACATACA-----TACACACA--------------------
-T--TT--------------AACTGCATGCTTGCATGTCTGATTGATCTATGTGATTCTTTGCACACAGCAGCAACCGTT
GGCGGATATCATCGCAGGGCTGAGGCGTGAGCATGACCGTCTGGAGGTCAGCGTGAGGAGGCAGACCGGAGAAGACCTGC
CATCCGCCGCGACGGCGGCGGAACTCGATGATCTGGAGCAGCGACTGGAGCGCGTGCTGGGTGAAGTTCGTGAAATGAAG
GTACACACG--TGCTGCAGCACTGCACAAAATTCTGTGTCGCTCACGTGCCCAGTGTTTGAGTGAACTGCAATATGACAT
TCTCGTGTGTGTG----------------------CAGGACAAGCCGCTGGAGCAACAGTTGGACGAATCATACCACAAG
GTAATTGTAATC-------TTAGGAGAACCAAAATCGATTCA----GAGGCACACAAAGCAATTTTTCATCCGGAATTTA
ACTGTGAATGGCATTGTGCATCTGACACGTAGGTGCACACCTTGGAGGACCAGAACAGCTTCCTTCGCCGCCTGGTAATT
CG------CATCGCGCTGCC----TGCCTGCTAAGCTGCTATTGTGGTTGTGTACTGGCTTCCTGAATGTGTCTTCACTC
TTAATTTGTCAGATGGGCGAGGAGGGGCAGCAGCGTGCTGCTGTGGAGGCGTCAGCTGTGGCGCCGAAGCTACCGGCGAC
GGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGAGGAGGAATTGACAGCGCTACGGCTGTGGCCGCGGCAGCTCCCCGACG
TGTAAGGCATAGGCCTGAAGCCCAGCCTGCACTCTGGTGAATGGTGATTAAGGTCGTGCGTATGAACACACTAGCTACTA
GACTACCTGTCTACCTTAT---TTGGTACCTGCAAAGAGAAAAAAAGACTGCCTT-------------ATTGGTGATCAA
TCTGCATCCTGACTAGTAGCATTTGTTGCATATTTGTTC--TGCTTTGCAGGTCGAGGAGAGATGATAGCCTGACGGAAG
ACTGGTGGAGATTATAATTGATTAA---TTATAAGGAATCTAGCTTAAACTTACTAGTAGCAGGCC--------------
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>chr3A_600
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---------------------------------------------------------------------ATCGGAGTCAC
TCACGGTCGGGCAACGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCGCCACCCGGAAGGAGGCGCGGTGACCCGAGCA
CTTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCCGCAGAGGATCGGTGACCGGCTTGCTG
CTTTC----CGGTCGGGCGTGACGGGCGGACCTTTCACGGTATACTATCCATCA--------------------------
-----------------------------------------------------------CTAGTCGCCGGCGAAACTTCC
TGGAAT----------TTTCGTCTGTACGGCGGCGCGTGGCCACGGACTATCACT--------------AGAGGAG----
-AGGAGAGCACCACGG----------------------------------------------------------------
--------------------------------------------------------------------ACTG--------
--------ACTGACTTGCTGCTCGATCTCTTCTTCTTCTACCTAGCTTGGCTTCGGCGTCGATC----------------
------------------------ACCAGTCCCCGCGTTCCGAGCCAAGAGAGAAGATGGGCCGCGGGAGGACGGAGATG
AAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGGGCGAGCT
CGCCGTGCTCTGCGGCGTGGACCTCGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTACTGCAGCC
CCAGCACAAGGTCCGTTCTCCGTCCGTTCCGTCACGCGCTAGTCGA----------------------------------
--------------------------------------------------------------------------------
-------GACAAGCGAGATTCTGCATTATGGTTTTGATGATCATG----CCGATTACTGAATCTGCATCCCTTGCAAGT-
-------GCCATCTTTGGCATCGTCCTAGCCT------------GCCGCAGTATTGGCAATTGGCATGCTCGAATTGTGT
TTTGTTTGTGATCAAGTTAGCCAGATGATGCTTTCGAATTTGGCTCTGATTTTAATCTTCTGCTCGGATTCAGATGCTTA
TGTTCATATTCAGTGTACAATATTACTATAGTTGTGACATATTTATACTTCACCTGTCAATGTTAAGCTGGAGCGAGCTA
ATTGAGCGCTACGAGAGCATCACCAACCACAAGTTCCAGTTCCAGTTCCAGTTCCAGGGGATAGATCATGATGATGATGA
TCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACAGTACACACACACA--------------------
-T--TTGTACACTCAGAGTTAACTGCATGCTTGCCTTTCTGATTGATCTATGCGATTCTTCGCACACAGCAACC---GTT
GGCGGAT------------CTGAGGCGTGAGCGTGACCGTCTCGAGGCCAGCGTGAGGAGGCAAACCGGAGAAGATCTGC
CATTCGCCGCGACGGCGGCCGAACTGGACGATCTGGAGCAGCGGCTGGAGTGCGTGCTGGGCGAAGTCCGTGAAATGAAG
GTACACACA--TCCT---ACACTGCACACAATTCTGTGTTGCTCACATGCCCAGTGTTTGAGTGAGCTGC---ATGACAG
TCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGACAAGCTGCTGGAGCAGCAGTTGGCCGAATCATACCACAAG
GTAAGCGTAATC-------CTAGGAGAACCAAAATCAATTCAATCAGAGGCACACAC-GCAAATTTTCATCTGGAAACTA
ACTGTGGATGACATTGCACATATGACACGTAGGTGCACATCTTGGAGGACCAGAACAGCTACCTTCGCCGCATGGTAATT
TG------CATCGCTGCCTGCCTATGTCTGCTGAGCTGCTATGCATACT---TACTGACTTCCTGAATGTGTTTTCACTC
TT----TGTCAGATGGGCGAGGAGGGGCAGCAACGTGCTGCTGTGGAGGCGTCATCGGTTGCGCCAAAGCTACCGGCGAT
GGCGTTCGGGGGATCCTTCCCGGAGGTGGAGGAGGAGGAATTGACGACACTGCGGCTGTGGCCGCGGCAGCTCCCCGATG
TGTAAGGCATAGGCCTCAAGCCCAGCCTGCGGCTGTAAC------GATTAAGGTCGTGCGTATGAACACACTAGCTATTA
GCCTATTAGATAGACTACCTTATTGGTACCTGCAAAGCAAAAAAAAAAAAAAGACTACCTTATTGGACATTGGTGATCAA
TCTGCATCCTGACTGGTA----TTGTTGCATATTGTTCTGTTGTTTTGCAGGTCGAGGAGAAATGATAGCCCGACGGAAG
ACAGACGGAGACTATCATTGATTAGT-----TAACAAATCTAGCTCAAACTTACTAGTAGCAGGCC--------------
-----------TATGTTCAGACGAC-------------------ATATACGTCAACAAATAGCAGAC----GCCCGTATT
TTGCTCCACCCAATTTACTGTATGACTGTGTGAGCAGCACTCCCCATA-------------TAGTATCACGTTGGTTCAT
ATGAATTTACTGCGG--------------TGTTTTGTTTAACATCGGTGTTGAAACTCTGGCT--------TTGATCAAC
ATGGGTAT-T---ACTACTTCGATTCTTTTAGGC-AACATG-GCCAAGCTTTATTAGTCAACC--------ATAGCTTCC
TTCTTCCTTGCGGCCTTGCCACGAGAGGTGGAGCATTGTGT--------CCCGGCTGGCCTGGTGCTGCACCAAAACAGG
TGTCGTACACGCCTTGCAAGTTACACCAAATTGGATGCGCAGCTAGG---------------------------------
-----------------------------------------------------GTTCATGTTGCTTCGCTGAACTTGTTC
TAGAGTTTTAGA----CTTTTAGGTAAC--AACTTAAACTTTGATTTCCTTCCGTTTATCTTCAAACTTTGGAAACCGTT
CACTTT--------------------------------------------------------------------------
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>chr3D_600
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---------------------------------------------------------------------ATCGGGGTCAC
TCACGGTCGGGCAACGCTTTCGCTTTACGCCGGAAACGGCAAGTTTCCACGGCCCGGAAGGAGGCGCGGTGACCCAACCA
CGTCCCAGACCGGCAACGCAGCCGCCGCTTTTGTTTTCTTCCACGCGCACCGCAGCAGAGGATCGGTGACTGGCTTGCTG
CTTTCCGGTCGGTCGGGCGTGACGGGCGGACCTTTCACAG--TACTATCCATCA--------------------------
-----------------------------------------------------------CTAGTCGCCGGCGAAACTTCC
TGGAAT----------TTTCGTCTGTACGGCGGCACGTGGCCATCCGCAGGCCATCACCAGAGGAGATGAGAGGAGAGGA
GAGGAGAGCACACCCGAGTTCACAGTTTCAGTCTCAGTTGTTACAAACTTAG----------------------------
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------------------------------CCCCGCGTCCCAAGCCAAGAGAGAAGATGGGCCGCGGGAGGACGGAGATG
AAGAGGATCCACAACGACGTGTCGCGCCGGGCCACCTTCGGCAAGCGCCGCCGCGGCCTGCTCAAGAAGGCGCGCGAGCT
CGCCGTGCTCTGCGGCGTGGACCACGGCCTCCTCGTCTTCGACGACGGCGGCGCCGGCAAGCTGTTCGACTAGTGCGCCC
CCAACACAAGGTCCGTCCTCCGCCCGTTCCGTCACGCGCTAACCCATTTGGATTTGCTTCTTCGTACGTACGCCCTATCT
AG------------------------------------------------------------------------------
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-------------------------CTATTGTTGTGACATAATTATACTTGACTTGCCATTGTTAAGCTGGAGCGAGCTA
ATTGAGCGCTACGAGAGCATCACCAAACA------CCAGTTCCAGTTCCAGGGCCAGGGGATACATCATGATGATC---A
TCAGGTCAATAAACA-----AACACATCCAGTCATGTACAACATACA-----TACATACATACATTTGTACACTCAAGAG
TTAGTT--------------AACTGCATGCTTGCCT-TCTGATTGATCTATGCGATTCTTTGCACACAGCAGCAACCGTT
GGCCGATATCATCGCAGGGCTGAGGTGTGAGCATGACCGTCTTGAGGCCAGCATGAGGAGGCAGACCGGAGAAGACCTGC
CATCCGACGCGACGGCCGCGGAACTCGACGATCTGGAGCAGCGGCTGGAGTTCATGCTGAGCAAAGTCCGTGAAATGCAG
GTACACACG--TGCTGCAGCACCGCACAAAATTCTGTGGTGCTCACATGCTCAGTGTTTGAGTGAACTCC---ATGAC--
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------------------------------ATAACGAATCTAGCTTAAACTTACTAGTAGCAGGCCAGTAGTGAGGGCTA
AGGACCCGGCCTATGTTCAGACGAC-------------------ATATACGTCAACAAGTAGCAGAG----GCCAGTATT
TTGCTCCCCACAATTTCCTGTGTGA-------------------CATA-------------TAGTATCATGTTGGTTCAT
GTGAATTTACTGCAG--------------TG-TTTCTTTAACATCAGTGTTGAAACTCTGACGTGAATGGATTGATCAAA
ACATGGGTACTGCACTACTATGATTTTTTTAGGC-AAATATCGCCAAGCTTTATTAGTCAACCTGTCAACCATTGCTTCC
TTCTTCCTTGTGGCCTTGTC----------GAGCATTGTGTCCCGGGCTCCCGGCTGGCCTGGTGCTGCACCAAAACAGG
TGTCGTACAGGCCTTGCAAGTCACACCAAATTCGATGCGCAGCTAGG---------------------------------
-----------------------------------------------------GTTCATGTTGCTTCGCTGAACTTGTTC
TAGAGTTTTAGA----CTTTTAGGTAAC--AACTTAAACTTTGATTTGGTTCAGTTTACC-CCTAACTTTGGAAACCGTT
CACTTTACAATCATTCTTCTCCTATAACCGGTTTAGACATCTTTGACTCCGGTCATTTCTAGTTTTGTATAAGTTCTATA
GAAAGATAATTGGTAGTGGACAGAACAAGATTCTGGAAGGTGTGTGTGGTTAGAAGAGGTACCTTTTTGTATGAGATTTT
TCATACTATATGGATTGAATTTTATGTGTCATACTTGTCAAAGGCACACCCTCTTGCAATCTGATGTAGATGGAAGATCC
AAGGAAACTATTTGCAAATACTAGCTAAATATCCATTTGTTGCTTTCTAAATACTAGCAAACGTCTGTTGTGTGTTGTTT
ATAGGCGAGGCAGATGGAGGGTAAAAGCTTTGCCGAGTTTCCCTTAGTGTGGAAACTCGGCAAAGGTTTCCCCATGTCAC
TTGCATGGTCCCGTGTGGGTCCCATTGATCAGGTGTTTGCCTAGTTTCTTTTGCCTGACGCTCGGCAAATATTAGACTTT
ACCAAGTTTCATCTTATCGCCAAATTTATTTCCACAACACTGGGCAATCAGTCTTCTTTTCCGAGTTTCTCATCATTACT
AAGTTTTTTTTAACTTAGTACTACTCGGCAAACGGGTAACATTGCTGAGCTTCCAGTGAAAAGCGCTCGGCAAAAAGTTT
GGAACTAGGCGTCTTCGGCGATTTCAGTAGTGCTAGAAATAAAGAAACAATCATATGCATCAGATCTCTCGCAACTCATA
CTCCAAGACATTTAATTTAACATAGATATGCTTAATTCTTGACTTGGCCTAAAAACAATTGATTTAGAAACAATAATACA
TATGCTGCTAATAAGATAATTTCATTATAAACTATCAAATTGTGTTCCGACACTGTTAAGGAAGTTTCAACTATATATAA
TGATATTATCTTTAAATACAAAGACATATTTTGAATGTCAAAAATATAGATTTTAAAGTACAAAATTATAAAGATAACTA
GCCGTAGCTAAATGCGCGGGTAACCCCACTGGTTTGCATTGAACGTGTCTACGCATGTTCATGTCTAGACTATGGAGTCC
TTTCTTTTTGAGCAAATATAATATCGTTGTTTAGTTTCAGCACATGATTCAGGTTAACATATGGCAAACTTAAAGGAGCC
CAAGCTTTCTAATTTCAACTTACACGAGGTTCGTTACCATTGCATTAGATAGGAGTATTAAGTAAGCAGGCACCAATCTA
GTTCTAGTCCATAACCAGGCAGAAACTTCAAACGTGGGTACTCGATCGGCCAGCGAATTCAGCAAGCTAGTCACATTCCA
TACTTGAGCTGCCTGTG----TGTGGCTGCGGGTTGCCTGCCTGCTTCACGACGGCCGGCTTGGATCGATCACGCCTTAT
TTCCAGGAAGTCGTCCATTGTGATAGTTGATAAACTCGGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------------
--------------------------------------S-----------------------------------------
------------------S-----------------------------------------------------S-S-----
----------------S-S--------S---S------------------------S----S-----S------SS----
-----S----S-SS------------------------S----------------------S-----------S------
----S---------------------------------------------------------------------SSS---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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S-S-SSSSSSSSSSSSSSSSSSSS--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S--------------------------S------------
--------S-------------------------------------------S-------------S-----------S-
-------------------S----------------S-------S-----------------------------------
-------------------S---------------------------------S--------------------------
------------------S--------------S----------------S---------------------------S-
----S----------------S----S---------------------S-----SS------------------------
-----------S-----------------------S----------------------S-S---S---------------
--------SS----------------------------------------------------------------------
----------S--S--SSSSSS----------------------------------S-S--------------------S
---------------------SS-S-SS----S-S---------------------------------------------
-------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------------SSSS---------
-------S--------------S---------------------S-SSSSSSSSSSSSSSS----S--------------
--------SSSSSSSSSSSSSSSSSSSSS-S----S--S--SSSS-------S-S-------------------------
---SS--SS--------------------SS-SSS---------S---S-------------------------------
-------S---S---------------S------S--------------S--S---S-----------SS-S--------
-------------S-----------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
------------SSSS----------SSSS--------S--S-----------------S-----------S--------
---S--S-------------------------------------------------------------------------
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------------------------------------------------------------------------S--S----
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----------------------------------------
>forward_1297
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------CTA
CCTAGCTTGGCTTCGGC---------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>reverse_2902
--------------------------------------------------------------------------------
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---------------------AGAGGAGGAGGAGTTGACGG---------------------------------------
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>forward_2521
--------------------------------------------------------------------------------
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---------------------GTCTCGTGTGTGTGCAGGAT---------------------------------------
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----------------------------------------
>reverse_3912
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TAAACCGTT
CACCTTGGCGA---------------------------------------------------------------------
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----------------------------------------
