Multiple sequence alignment - TraesCS3A01G086600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G086600 chr3A 100.000 2333 0 0 1 2333 55840050 55842382 0.000000e+00 4309.0
1 TraesCS3A01G086600 chr3A 80.288 695 94 23 834 1513 56132780 56133446 3.490000e-133 484.0
2 TraesCS3A01G086600 chr3A 94.389 303 16 1 150 451 111840098 111839796 4.540000e-127 464.0
3 TraesCS3A01G086600 chr3A 93.312 314 19 2 139 451 703404304 703403992 1.630000e-126 462.0
4 TraesCS3A01G086600 chr3B 90.539 1892 164 10 453 2333 68661202 68663089 0.000000e+00 2488.0
5 TraesCS3A01G086600 chr3B 82.799 1029 124 25 496 1499 68871912 68872912 0.000000e+00 870.0
6 TraesCS3A01G086600 chr3B 95.205 146 7 0 3 148 68661072 68661217 5.010000e-57 231.0
7 TraesCS3A01G086600 chr3B 82.301 226 35 3 1779 2003 674272744 674272523 8.510000e-45 191.0
8 TraesCS3A01G086600 chr3D 83.205 1042 118 26 496 1512 43962891 43963900 0.000000e+00 902.0
9 TraesCS3A01G086600 chr3D 80.864 810 126 19 1543 2331 291756247 291755446 5.510000e-171 610.0
10 TraesCS3A01G086600 chr7D 80.870 805 134 16 1540 2331 528031489 528032286 1.180000e-172 616.0
11 TraesCS3A01G086600 chr7D 88.991 109 11 1 1664 1771 629822547 629822439 1.450000e-27 134.0
12 TraesCS3A01G086600 chr5A 80.482 789 123 18 1533 2304 244764873 244765647 2.010000e-160 575.0
13 TraesCS3A01G086600 chr5A 93.103 319 19 3 144 460 559787646 559787329 4.540000e-127 464.0
14 TraesCS3A01G086600 chr5A 93.226 310 18 3 148 455 299294797 299295105 9.830000e-124 453.0
15 TraesCS3A01G086600 chr6A 78.941 812 141 16 1543 2331 140542481 140541677 2.050000e-145 525.0
16 TraesCS3A01G086600 chr6A 93.831 308 18 1 146 452 80803380 80803073 1.630000e-126 462.0
17 TraesCS3A01G086600 chr6A 93.791 306 17 2 148 452 422776251 422775947 2.110000e-125 459.0
18 TraesCS3A01G086600 chr6A 93.137 306 19 2 148 451 46548854 46549159 4.570000e-122 448.0
19 TraesCS3A01G086600 chr6A 79.339 484 64 19 1693 2148 390730318 390729843 8.100000e-80 307.0
20 TraesCS3A01G086600 chr4D 78.294 797 147 16 1545 2322 476405651 476406440 7.490000e-135 490.0
21 TraesCS3A01G086600 chr2D 78.399 787 140 20 1541 2303 630541997 630542777 3.490000e-133 484.0
22 TraesCS3A01G086600 chr2D 78.027 223 48 1 1537 1759 287253521 287253742 3.130000e-29 139.0
23 TraesCS3A01G086600 chr2D 78.531 177 36 2 1595 1771 600315641 600315815 5.270000e-22 115.0
24 TraesCS3A01G086600 chr4B 81.373 612 94 11 1541 2148 83307724 83308319 4.510000e-132 481.0
25 TraesCS3A01G086600 chr2A 93.464 306 19 1 147 451 769193127 769193432 9.830000e-124 453.0
26 TraesCS3A01G086600 chr7A 92.652 313 19 2 144 452 252954053 252954365 4.570000e-122 448.0
27 TraesCS3A01G086600 chr5D 78.404 727 114 23 1606 2304 329794312 329793601 1.280000e-117 433.0
28 TraesCS3A01G086600 chr5D 83.333 120 20 0 1593 1712 119610270 119610151 6.810000e-21 111.0
29 TraesCS3A01G086600 chr4A 77.614 746 145 13 1537 2263 429251171 429251913 1.280000e-117 433.0
30 TraesCS3A01G086600 chr4A 81.527 406 63 9 1936 2331 35591064 35591467 8.040000e-85 324.0
31 TraesCS3A01G086600 chr4A 79.439 214 40 4 1623 1834 649178419 649178208 5.190000e-32 148.0
32 TraesCS3A01G086600 chr7B 82.500 320 55 1 2007 2326 631320982 631320664 1.770000e-71 279.0
33 TraesCS3A01G086600 chr7B 83.158 95 16 0 1540 1634 377909350 377909444 1.150000e-13 87.9
34 TraesCS3A01G086600 chr7B 87.302 63 8 0 1819 1881 59956794 59956856 3.220000e-09 73.1
35 TraesCS3A01G086600 chr5B 80.925 173 31 1 1599 1771 271151434 271151604 4.040000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G086600 chr3A 55840050 55842382 2332 False 4309.0 4309 100.000 1 2333 1 chr3A.!!$F1 2332
1 TraesCS3A01G086600 chr3A 56132780 56133446 666 False 484.0 484 80.288 834 1513 1 chr3A.!!$F2 679
2 TraesCS3A01G086600 chr3B 68661072 68663089 2017 False 1359.5 2488 92.872 3 2333 2 chr3B.!!$F2 2330
3 TraesCS3A01G086600 chr3B 68871912 68872912 1000 False 870.0 870 82.799 496 1499 1 chr3B.!!$F1 1003
4 TraesCS3A01G086600 chr3D 43962891 43963900 1009 False 902.0 902 83.205 496 1512 1 chr3D.!!$F1 1016
5 TraesCS3A01G086600 chr3D 291755446 291756247 801 True 610.0 610 80.864 1543 2331 1 chr3D.!!$R1 788
6 TraesCS3A01G086600 chr7D 528031489 528032286 797 False 616.0 616 80.870 1540 2331 1 chr7D.!!$F1 791
7 TraesCS3A01G086600 chr5A 244764873 244765647 774 False 575.0 575 80.482 1533 2304 1 chr5A.!!$F1 771
8 TraesCS3A01G086600 chr6A 140541677 140542481 804 True 525.0 525 78.941 1543 2331 1 chr6A.!!$R2 788
9 TraesCS3A01G086600 chr4D 476405651 476406440 789 False 490.0 490 78.294 1545 2322 1 chr4D.!!$F1 777
10 TraesCS3A01G086600 chr2D 630541997 630542777 780 False 484.0 484 78.399 1541 2303 1 chr2D.!!$F3 762
11 TraesCS3A01G086600 chr4B 83307724 83308319 595 False 481.0 481 81.373 1541 2148 1 chr4B.!!$F1 607
12 TraesCS3A01G086600 chr5D 329793601 329794312 711 True 433.0 433 78.404 1606 2304 1 chr5D.!!$R2 698
13 TraesCS3A01G086600 chr4A 429251171 429251913 742 False 433.0 433 77.614 1537 2263 1 chr4A.!!$F2 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 999 0.036164 ACATAGCACCAAGGCGTGAA 59.964 50.0 0.76 0.0 39.27 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2148 0.108756 GGTGACTCGGGCACTAGTTC 60.109 60.0 9.35 0.0 36.53 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.932356 ATGAGATTGTCGAACTATTTGCAT 57.068 33.333 0.00 0.00 0.00 3.96
109 110 2.101750 TGAACTAGTCACAAAGTCGCCA 59.898 45.455 0.00 0.00 0.00 5.69
131 132 8.820933 CGCCATGTAGTTTCATTATATATCTGG 58.179 37.037 0.00 0.00 0.00 3.86
172 173 5.826601 TTTTTGAACACAGTACAGATGCA 57.173 34.783 0.00 0.00 0.00 3.96
173 174 5.826601 TTTTGAACACAGTACAGATGCAA 57.173 34.783 0.00 0.00 0.00 4.08
174 175 5.422666 TTTGAACACAGTACAGATGCAAG 57.577 39.130 0.00 0.00 0.00 4.01
175 176 2.807967 TGAACACAGTACAGATGCAAGC 59.192 45.455 0.00 0.00 0.00 4.01
176 177 1.432514 ACACAGTACAGATGCAAGCG 58.567 50.000 0.00 0.00 0.00 4.68
177 178 0.095935 CACAGTACAGATGCAAGCGC 59.904 55.000 0.00 0.00 39.24 5.92
178 179 0.036952 ACAGTACAGATGCAAGCGCT 60.037 50.000 2.64 2.64 39.64 5.92
179 180 0.649475 CAGTACAGATGCAAGCGCTC 59.351 55.000 12.06 0.00 39.64 5.03
180 181 0.247460 AGTACAGATGCAAGCGCTCA 59.753 50.000 12.06 5.63 39.64 4.26
181 182 1.134580 AGTACAGATGCAAGCGCTCAT 60.135 47.619 12.06 11.47 39.64 2.90
182 183 2.101415 AGTACAGATGCAAGCGCTCATA 59.899 45.455 12.06 0.00 39.64 2.15
183 184 2.251409 ACAGATGCAAGCGCTCATAT 57.749 45.000 12.06 5.22 39.64 1.78
184 185 3.391506 ACAGATGCAAGCGCTCATATA 57.608 42.857 12.06 0.00 39.64 0.86
185 186 3.732212 ACAGATGCAAGCGCTCATATAA 58.268 40.909 12.06 0.00 39.64 0.98
186 187 4.129380 ACAGATGCAAGCGCTCATATAAA 58.871 39.130 12.06 0.00 39.64 1.40
187 188 4.024556 ACAGATGCAAGCGCTCATATAAAC 60.025 41.667 12.06 0.00 39.64 2.01
188 189 3.185188 AGATGCAAGCGCTCATATAAACG 59.815 43.478 12.06 0.00 39.64 3.60
195 196 3.008456 CGCTCATATAAACGCGCATAC 57.992 47.619 5.73 0.00 39.11 2.39
196 197 2.407026 CGCTCATATAAACGCGCATACA 59.593 45.455 5.73 0.00 39.11 2.29
197 198 3.718036 CGCTCATATAAACGCGCATACAC 60.718 47.826 5.73 0.00 39.11 2.90
198 199 3.428870 GCTCATATAAACGCGCATACACT 59.571 43.478 5.73 0.00 0.00 3.55
199 200 4.433022 GCTCATATAAACGCGCATACACTC 60.433 45.833 5.73 0.00 0.00 3.51
200 201 4.612943 TCATATAAACGCGCATACACTCA 58.387 39.130 5.73 0.00 0.00 3.41
201 202 4.443063 TCATATAAACGCGCATACACTCAC 59.557 41.667 5.73 0.00 0.00 3.51
202 203 1.352114 TAAACGCGCATACACTCACC 58.648 50.000 5.73 0.00 0.00 4.02
203 204 1.296056 AAACGCGCATACACTCACCC 61.296 55.000 5.73 0.00 0.00 4.61
204 205 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
205 206 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
206 207 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
207 208 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
208 209 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
209 210 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
210 211 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
211 212 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
212 213 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
213 214 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
214 215 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
215 216 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
216 217 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
217 218 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
218 219 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
219 220 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
220 221 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
221 222 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
222 223 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
223 224 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
224 225 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
225 226 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
226 227 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
229 230 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
230 231 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
231 232 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
232 233 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
233 234 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
234 235 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
235 236 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
236 237 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
237 238 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
238 239 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
239 240 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
240 241 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
241 242 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
242 243 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
243 244 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
244 245 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
245 246 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
246 247 1.133009 CCTACCCCTATGAGCACCTCT 60.133 57.143 0.00 0.00 0.00 3.69
247 248 1.967066 CTACCCCTATGAGCACCTCTG 59.033 57.143 0.00 0.00 0.00 3.35
248 249 0.339859 ACCCCTATGAGCACCTCTGA 59.660 55.000 0.00 0.00 0.00 3.27
249 250 0.755686 CCCCTATGAGCACCTCTGAC 59.244 60.000 0.00 0.00 0.00 3.51
250 251 1.489481 CCCTATGAGCACCTCTGACA 58.511 55.000 0.00 0.00 0.00 3.58
251 252 1.411977 CCCTATGAGCACCTCTGACAG 59.588 57.143 0.00 0.00 0.00 3.51
252 253 2.382882 CCTATGAGCACCTCTGACAGA 58.617 52.381 4.78 4.78 0.00 3.41
253 254 2.100584 CCTATGAGCACCTCTGACAGAC 59.899 54.545 0.00 0.00 0.00 3.51
254 255 1.935799 ATGAGCACCTCTGACAGACT 58.064 50.000 0.00 0.00 0.00 3.24
255 256 0.964700 TGAGCACCTCTGACAGACTG 59.035 55.000 0.00 0.00 0.00 3.51
256 257 1.252175 GAGCACCTCTGACAGACTGA 58.748 55.000 10.08 0.00 0.00 3.41
257 258 1.202114 GAGCACCTCTGACAGACTGAG 59.798 57.143 10.08 0.00 41.94 3.35
258 259 0.389687 GCACCTCTGACAGACTGAGC 60.390 60.000 10.08 2.73 41.28 4.26
259 260 0.246086 CACCTCTGACAGACTGAGCC 59.754 60.000 10.08 0.00 41.28 4.70
260 261 1.247419 ACCTCTGACAGACTGAGCCG 61.247 60.000 10.08 0.00 41.28 5.52
261 262 1.510383 CTCTGACAGACTGAGCCGG 59.490 63.158 10.08 0.00 37.65 6.13
262 263 2.125753 CTGACAGACTGAGCCGGC 60.126 66.667 21.89 21.89 0.00 6.13
263 264 2.917227 TGACAGACTGAGCCGGCA 60.917 61.111 31.54 7.98 0.00 5.69
264 265 2.236223 CTGACAGACTGAGCCGGCAT 62.236 60.000 31.54 14.28 0.00 4.40
265 266 0.970427 TGACAGACTGAGCCGGCATA 60.970 55.000 31.54 16.21 0.00 3.14
266 267 0.390860 GACAGACTGAGCCGGCATAT 59.609 55.000 31.54 8.11 0.00 1.78
267 268 0.390860 ACAGACTGAGCCGGCATATC 59.609 55.000 31.54 18.63 0.00 1.63
268 269 0.390492 CAGACTGAGCCGGCATATCA 59.610 55.000 31.54 22.44 0.00 2.15
269 270 1.001746 CAGACTGAGCCGGCATATCAT 59.998 52.381 31.54 13.17 0.00 2.45
270 271 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
271 272 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
272 273 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
273 274 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
274 275 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
275 276 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
276 277 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
277 278 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
278 279 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
279 280 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
280 281 4.217118 GCCGGCATATCATCTTGAGATTTT 59.783 41.667 24.80 0.00 31.21 1.82
281 282 5.412594 GCCGGCATATCATCTTGAGATTTTA 59.587 40.000 24.80 0.00 31.21 1.52
282 283 6.621596 GCCGGCATATCATCTTGAGATTTTAC 60.622 42.308 24.80 0.00 31.21 2.01
283 284 6.427853 CCGGCATATCATCTTGAGATTTTACA 59.572 38.462 0.00 0.00 31.21 2.41
284 285 7.041167 CCGGCATATCATCTTGAGATTTTACAA 60.041 37.037 0.00 0.00 31.21 2.41
285 286 8.344831 CGGCATATCATCTTGAGATTTTACAAA 58.655 33.333 0.00 0.00 31.21 2.83
286 287 9.674824 GGCATATCATCTTGAGATTTTACAAAG 57.325 33.333 0.00 0.00 31.21 2.77
291 292 8.099364 TCATCTTGAGATTTTACAAAGTCACC 57.901 34.615 0.86 0.00 31.21 4.02
292 293 7.719193 TCATCTTGAGATTTTACAAAGTCACCA 59.281 33.333 0.86 0.00 31.21 4.17
293 294 8.517878 CATCTTGAGATTTTACAAAGTCACCAT 58.482 33.333 0.86 0.00 31.21 3.55
294 295 9.739276 ATCTTGAGATTTTACAAAGTCACCATA 57.261 29.630 0.86 0.00 0.00 2.74
295 296 9.219603 TCTTGAGATTTTACAAAGTCACCATAG 57.780 33.333 0.86 0.00 0.00 2.23
296 297 7.921786 TGAGATTTTACAAAGTCACCATAGG 57.078 36.000 0.86 0.00 0.00 2.57
297 298 6.374333 TGAGATTTTACAAAGTCACCATAGGC 59.626 38.462 0.86 0.00 0.00 3.93
298 299 6.245408 AGATTTTACAAAGTCACCATAGGCA 58.755 36.000 0.86 0.00 0.00 4.75
299 300 5.699097 TTTTACAAAGTCACCATAGGCAC 57.301 39.130 0.00 0.00 0.00 5.01
300 301 2.200373 ACAAAGTCACCATAGGCACC 57.800 50.000 0.00 0.00 0.00 5.01
301 302 1.705186 ACAAAGTCACCATAGGCACCT 59.295 47.619 0.00 0.00 0.00 4.00
302 303 2.290323 ACAAAGTCACCATAGGCACCTC 60.290 50.000 0.00 0.00 0.00 3.85
303 304 0.537188 AAGTCACCATAGGCACCTCG 59.463 55.000 0.00 0.00 0.00 4.63
304 305 0.614979 AGTCACCATAGGCACCTCGT 60.615 55.000 0.00 0.00 0.00 4.18
305 306 1.108776 GTCACCATAGGCACCTCGTA 58.891 55.000 0.00 0.00 0.00 3.43
306 307 1.067212 GTCACCATAGGCACCTCGTAG 59.933 57.143 0.00 0.00 0.00 3.51
307 308 1.112113 CACCATAGGCACCTCGTAGT 58.888 55.000 0.00 0.00 0.00 2.73
308 309 1.067212 CACCATAGGCACCTCGTAGTC 59.933 57.143 0.00 0.00 0.00 2.59
309 310 0.311165 CCATAGGCACCTCGTAGTCG 59.689 60.000 0.00 0.00 38.55 4.18
310 311 1.306148 CATAGGCACCTCGTAGTCGA 58.694 55.000 0.00 0.00 44.12 4.20
311 312 1.002684 CATAGGCACCTCGTAGTCGAC 60.003 57.143 7.70 7.70 41.35 4.20
330 331 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
331 332 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
332 333 1.553706 GGAACGTCTCCTCCCACTAA 58.446 55.000 8.87 0.00 41.61 2.24
333 334 1.897802 GGAACGTCTCCTCCCACTAAA 59.102 52.381 8.87 0.00 41.61 1.85
334 335 2.301009 GGAACGTCTCCTCCCACTAAAA 59.699 50.000 8.87 0.00 41.61 1.52
335 336 3.586892 GAACGTCTCCTCCCACTAAAAG 58.413 50.000 0.00 0.00 0.00 2.27
336 337 1.275573 ACGTCTCCTCCCACTAAAAGC 59.724 52.381 0.00 0.00 0.00 3.51
337 338 1.736032 CGTCTCCTCCCACTAAAAGCG 60.736 57.143 0.00 0.00 0.00 4.68
338 339 1.275573 GTCTCCTCCCACTAAAAGCGT 59.724 52.381 0.00 0.00 0.00 5.07
339 340 2.494870 GTCTCCTCCCACTAAAAGCGTA 59.505 50.000 0.00 0.00 0.00 4.42
340 341 3.132467 GTCTCCTCCCACTAAAAGCGTAT 59.868 47.826 0.00 0.00 0.00 3.06
341 342 3.383825 TCTCCTCCCACTAAAAGCGTATC 59.616 47.826 0.00 0.00 0.00 2.24
342 343 2.100252 TCCTCCCACTAAAAGCGTATCG 59.900 50.000 0.00 0.00 0.00 2.92
355 356 1.847818 CGTATCGCCGGAATTCTTGA 58.152 50.000 5.05 0.00 0.00 3.02
356 357 2.198406 CGTATCGCCGGAATTCTTGAA 58.802 47.619 5.05 0.00 0.00 2.69
357 358 2.605818 CGTATCGCCGGAATTCTTGAAA 59.394 45.455 5.05 0.00 0.00 2.69
358 359 3.247648 CGTATCGCCGGAATTCTTGAAAT 59.752 43.478 5.05 0.00 0.00 2.17
359 360 4.446385 CGTATCGCCGGAATTCTTGAAATA 59.554 41.667 5.05 0.00 0.00 1.40
360 361 5.050634 CGTATCGCCGGAATTCTTGAAATAA 60.051 40.000 5.05 0.00 0.00 1.40
361 362 5.828299 ATCGCCGGAATTCTTGAAATAAA 57.172 34.783 5.05 0.00 0.00 1.40
362 363 5.828299 TCGCCGGAATTCTTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
363 364 5.816919 TCGCCGGAATTCTTGAAATAAATC 58.183 37.500 5.05 0.00 0.00 2.17
364 365 4.976116 CGCCGGAATTCTTGAAATAAATCC 59.024 41.667 5.05 0.00 0.00 3.01
365 366 5.449862 CGCCGGAATTCTTGAAATAAATCCA 60.450 40.000 5.05 0.00 0.00 3.41
366 367 5.979517 GCCGGAATTCTTGAAATAAATCCAG 59.020 40.000 5.05 0.00 0.00 3.86
367 368 6.183360 GCCGGAATTCTTGAAATAAATCCAGA 60.183 38.462 5.05 0.00 0.00 3.86
368 369 7.630513 GCCGGAATTCTTGAAATAAATCCAGAA 60.631 37.037 5.05 0.00 36.07 3.02
369 370 8.416329 CCGGAATTCTTGAAATAAATCCAGAAT 58.584 33.333 5.23 0.00 41.18 2.40
379 380 9.316730 TGAAATAAATCCAGAATAAATGCAAGC 57.683 29.630 0.00 0.00 0.00 4.01
380 381 9.316730 GAAATAAATCCAGAATAAATGCAAGCA 57.683 29.630 0.00 0.00 0.00 3.91
381 382 8.652810 AATAAATCCAGAATAAATGCAAGCAC 57.347 30.769 0.00 0.00 0.00 4.40
382 383 4.660789 ATCCAGAATAAATGCAAGCACC 57.339 40.909 0.00 0.00 0.00 5.01
383 384 3.429492 TCCAGAATAAATGCAAGCACCA 58.571 40.909 0.00 0.00 0.00 4.17
384 385 3.444742 TCCAGAATAAATGCAAGCACCAG 59.555 43.478 0.00 0.00 0.00 4.00
385 386 3.429822 CCAGAATAAATGCAAGCACCAGG 60.430 47.826 0.00 0.00 0.00 4.45
386 387 3.444742 CAGAATAAATGCAAGCACCAGGA 59.555 43.478 0.00 0.00 0.00 3.86
387 388 3.445096 AGAATAAATGCAAGCACCAGGAC 59.555 43.478 0.00 0.00 0.00 3.85
388 389 2.584835 TAAATGCAAGCACCAGGACT 57.415 45.000 0.00 0.00 0.00 3.85
389 390 1.708341 AAATGCAAGCACCAGGACTT 58.292 45.000 0.00 0.00 0.00 3.01
390 391 0.963962 AATGCAAGCACCAGGACTTG 59.036 50.000 17.76 17.76 44.88 3.16
391 392 0.111061 ATGCAAGCACCAGGACTTGA 59.889 50.000 23.33 12.92 44.89 3.02
392 393 0.106769 TGCAAGCACCAGGACTTGAA 60.107 50.000 23.33 14.64 44.89 2.69
393 394 0.312102 GCAAGCACCAGGACTTGAAC 59.688 55.000 23.33 8.98 44.89 3.18
394 395 0.954452 CAAGCACCAGGACTTGAACC 59.046 55.000 17.37 0.00 44.89 3.62
395 396 0.178990 AAGCACCAGGACTTGAACCC 60.179 55.000 0.00 0.00 0.00 4.11
396 397 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
400 401 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
401 402 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
426 427 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
427 428 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
428 429 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
429 430 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
430 431 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
431 432 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
432 433 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
433 434 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
434 435 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
435 436 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
436 437 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
437 438 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
438 439 2.571653 TCCACCTAACCATCTCAACCAG 59.428 50.000 0.00 0.00 0.00 4.00
439 440 2.571653 CCACCTAACCATCTCAACCAGA 59.428 50.000 0.00 0.00 34.78 3.86
440 441 3.369892 CCACCTAACCATCTCAACCAGAG 60.370 52.174 0.00 0.00 46.14 3.35
441 442 2.840651 ACCTAACCATCTCAACCAGAGG 59.159 50.000 0.00 0.00 44.81 3.69
442 443 2.840651 CCTAACCATCTCAACCAGAGGT 59.159 50.000 0.00 0.00 44.81 3.85
452 453 2.342279 CCAGAGGTTGGTTCGCGA 59.658 61.111 3.71 3.71 42.41 5.87
453 454 1.079127 CCAGAGGTTGGTTCGCGAT 60.079 57.895 10.88 0.00 42.41 4.58
454 455 1.084370 CCAGAGGTTGGTTCGCGATC 61.084 60.000 10.88 9.61 42.41 3.69
455 456 1.084370 CAGAGGTTGGTTCGCGATCC 61.084 60.000 25.93 25.93 0.00 3.36
456 457 1.814169 GAGGTTGGTTCGCGATCCC 60.814 63.158 28.58 22.41 0.00 3.85
457 458 2.046700 GGTTGGTTCGCGATCCCA 60.047 61.111 28.58 24.50 0.00 4.37
458 459 1.451387 GGTTGGTTCGCGATCCCAT 60.451 57.895 28.58 0.00 0.00 4.00
459 460 0.179067 GGTTGGTTCGCGATCCCATA 60.179 55.000 28.58 16.17 0.00 2.74
460 461 1.542547 GGTTGGTTCGCGATCCCATAT 60.543 52.381 28.58 0.00 0.00 1.78
461 462 1.531149 GTTGGTTCGCGATCCCATATG 59.469 52.381 28.58 0.00 0.00 1.78
462 463 1.044611 TGGTTCGCGATCCCATATGA 58.955 50.000 28.58 10.17 0.00 2.15
463 464 1.623311 TGGTTCGCGATCCCATATGAT 59.377 47.619 28.58 0.00 0.00 2.45
464 465 2.829120 TGGTTCGCGATCCCATATGATA 59.171 45.455 28.58 8.82 0.00 2.15
465 466 3.450817 TGGTTCGCGATCCCATATGATAT 59.549 43.478 28.58 0.00 0.00 1.63
466 467 4.051922 GGTTCGCGATCCCATATGATATC 58.948 47.826 23.00 5.81 0.00 1.63
467 468 4.202161 GGTTCGCGATCCCATATGATATCT 60.202 45.833 23.00 0.00 0.00 1.98
468 469 5.009710 GGTTCGCGATCCCATATGATATCTA 59.990 44.000 23.00 0.00 0.00 1.98
473 474 7.447238 TCGCGATCCCATATGATATCTAATACA 59.553 37.037 3.71 0.00 0.00 2.29
475 476 7.539022 GCGATCCCATATGATATCTAATACACG 59.461 40.741 3.65 0.00 0.00 4.49
502 503 3.220110 CATGAGATGGGCTTGCAACTAT 58.780 45.455 0.00 0.00 0.00 2.12
532 533 5.256806 AGCTCCACCACTAAAATAGGTTT 57.743 39.130 0.00 0.00 32.15 3.27
576 578 5.763876 AGGTTGGTTATAGCCTCATATCC 57.236 43.478 7.19 0.00 0.00 2.59
592 594 2.910688 ATCCGGATCTTGTACGCATT 57.089 45.000 12.38 0.00 30.81 3.56
615 617 3.641434 AGCTGGAATACAAGCTGTCAT 57.359 42.857 0.00 0.00 34.00 3.06
654 657 3.376234 TGTCTGAATTGCTAGCTCAATGC 59.624 43.478 17.23 7.53 36.83 3.56
680 683 8.751242 CATTATTAACCATCAATGCATCCCATA 58.249 33.333 0.00 0.00 32.67 2.74
797 809 8.846423 ATATAGAGACGGGGAAGATTTGATAT 57.154 34.615 0.00 0.00 0.00 1.63
956 969 4.049186 CACGCCCTTACAGACACATATAC 58.951 47.826 0.00 0.00 0.00 1.47
969 982 8.474831 ACAGACACATATACTACTTGCAATACA 58.525 33.333 0.00 0.00 0.00 2.29
984 997 1.953559 ATACATAGCACCAAGGCGTG 58.046 50.000 0.00 0.00 39.27 5.34
986 999 0.036164 ACATAGCACCAAGGCGTGAA 59.964 50.000 0.76 0.00 39.27 3.18
1044 1058 4.339247 GCTGTGGCCATTGTAGTCATTTAT 59.661 41.667 9.72 0.00 0.00 1.40
1069 1083 1.675720 GGCAGTTGTTGGTGCAGGTT 61.676 55.000 0.00 0.00 41.75 3.50
1081 1095 2.477176 GCAGGTTCACGTGTGCCAA 61.477 57.895 24.73 8.31 34.50 4.52
1110 1124 1.215382 CAATCCAGACGTCCAGCGA 59.785 57.895 13.01 2.85 44.77 4.93
1176 1190 6.263168 AGGACGAGATCAAATTCAACAAAGTT 59.737 34.615 0.00 0.00 0.00 2.66
1202 1216 2.579787 CGAGAGCGACGCCGATTT 60.580 61.111 17.79 0.00 40.82 2.17
1233 1247 4.102367 GGCTTACTCCTCCATCTCTTCATT 59.898 45.833 0.00 0.00 0.00 2.57
1325 1345 1.975680 TCTCTTGGACTTTAAGCCGGT 59.024 47.619 1.90 0.00 0.00 5.28
1379 1405 9.970395 ATGTCGATGCAACAATTATTATTTGAT 57.030 25.926 0.00 0.00 0.00 2.57
1442 1469 9.585099 TGCATGTTTATGGACTCAATTTTAATC 57.415 29.630 0.00 0.00 34.79 1.75
1515 1542 6.266558 TCTCTTTCTCCTGGATTATCTAGCAC 59.733 42.308 0.00 0.00 0.00 4.40
1623 1650 0.950071 CAAAAGTTGGCCCAATGCGG 60.950 55.000 0.00 0.00 42.61 5.69
1642 1669 3.408851 GACCCAAACGGACGCGTC 61.409 66.667 30.67 30.67 34.64 5.19
1688 1715 4.022329 ACTCATTTCCGACCCAAATTTGAC 60.022 41.667 19.86 9.33 0.00 3.18
1721 1748 2.025418 GCACGGACACGAAACGGAT 61.025 57.895 0.00 0.00 44.60 4.18
1798 1828 2.492567 CCCATTTCTCCCACTTTCCCAA 60.493 50.000 0.00 0.00 0.00 4.12
2014 2094 1.612462 CCAGAGGCATGAGCAAGAACA 60.612 52.381 0.00 0.00 44.61 3.18
2061 2141 2.842462 TCTCGGCCACCACACAGT 60.842 61.111 2.24 0.00 0.00 3.55
2068 2148 1.983224 CCACCACACAGTAGGAGGG 59.017 63.158 0.00 0.00 32.67 4.30
2245 2327 4.812476 CACGCAGCCGATTCCCGA 62.812 66.667 0.00 0.00 41.76 5.14
2293 2377 3.854669 CTCCGGGGAATGCTCGCT 61.855 66.667 0.00 0.00 34.94 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.850234 TCTCATAAGTAGGGGAGTAGTAAGG 58.150 44.000 0.00 0.00 0.00 2.69
1 2 8.798402 CAATCTCATAAGTAGGGGAGTAGTAAG 58.202 40.741 0.00 0.00 0.00 2.34
17 18 7.841915 TGCAAATAGTTCGACAATCTCATAA 57.158 32.000 0.00 0.00 0.00 1.90
150 151 5.826601 TGCATCTGTACTGTGTTCAAAAA 57.173 34.783 0.00 0.00 0.00 1.94
151 152 5.733091 GCTTGCATCTGTACTGTGTTCAAAA 60.733 40.000 0.00 0.00 0.00 2.44
152 153 4.261155 GCTTGCATCTGTACTGTGTTCAAA 60.261 41.667 0.00 0.00 0.00 2.69
153 154 3.250762 GCTTGCATCTGTACTGTGTTCAA 59.749 43.478 0.00 0.00 0.00 2.69
154 155 2.807967 GCTTGCATCTGTACTGTGTTCA 59.192 45.455 0.00 0.00 0.00 3.18
155 156 2.159787 CGCTTGCATCTGTACTGTGTTC 60.160 50.000 0.00 0.00 0.00 3.18
156 157 1.800586 CGCTTGCATCTGTACTGTGTT 59.199 47.619 0.00 0.00 0.00 3.32
157 158 1.432514 CGCTTGCATCTGTACTGTGT 58.567 50.000 0.00 0.00 0.00 3.72
158 159 0.095935 GCGCTTGCATCTGTACTGTG 59.904 55.000 0.00 0.00 38.92 3.66
159 160 0.036952 AGCGCTTGCATCTGTACTGT 60.037 50.000 2.64 0.00 42.66 3.55
160 161 0.649475 GAGCGCTTGCATCTGTACTG 59.351 55.000 13.26 0.00 42.66 2.74
161 162 0.247460 TGAGCGCTTGCATCTGTACT 59.753 50.000 13.26 0.00 42.66 2.73
162 163 1.293924 ATGAGCGCTTGCATCTGTAC 58.706 50.000 13.26 0.00 42.66 2.90
163 164 2.888834 TATGAGCGCTTGCATCTGTA 57.111 45.000 13.26 0.00 42.66 2.74
164 165 2.251409 ATATGAGCGCTTGCATCTGT 57.749 45.000 13.26 0.00 42.66 3.41
165 166 4.461405 GTTTATATGAGCGCTTGCATCTG 58.539 43.478 13.26 0.00 42.66 2.90
166 167 3.185188 CGTTTATATGAGCGCTTGCATCT 59.815 43.478 13.26 6.79 42.66 2.90
167 168 3.473367 CGTTTATATGAGCGCTTGCATC 58.527 45.455 13.26 0.00 42.66 3.91
168 169 2.349817 GCGTTTATATGAGCGCTTGCAT 60.350 45.455 19.08 14.41 45.48 3.96
169 170 1.003972 GCGTTTATATGAGCGCTTGCA 60.004 47.619 19.08 6.25 45.48 4.08
170 171 1.663494 GCGTTTATATGAGCGCTTGC 58.337 50.000 19.08 0.00 45.48 4.01
171 172 1.924408 CGCGTTTATATGAGCGCTTG 58.076 50.000 22.51 7.90 46.56 4.01
176 177 3.428870 AGTGTATGCGCGTTTATATGAGC 59.571 43.478 7.78 0.00 36.72 4.26
177 178 4.679654 TGAGTGTATGCGCGTTTATATGAG 59.320 41.667 7.78 0.00 0.00 2.90
178 179 4.443063 GTGAGTGTATGCGCGTTTATATGA 59.557 41.667 7.78 0.00 0.00 2.15
179 180 4.376008 GGTGAGTGTATGCGCGTTTATATG 60.376 45.833 7.78 0.00 0.00 1.78
180 181 3.739300 GGTGAGTGTATGCGCGTTTATAT 59.261 43.478 7.78 0.00 0.00 0.86
181 182 3.117794 GGTGAGTGTATGCGCGTTTATA 58.882 45.455 7.78 1.67 0.00 0.98
182 183 1.931172 GGTGAGTGTATGCGCGTTTAT 59.069 47.619 7.78 2.74 0.00 1.40
183 184 1.352114 GGTGAGTGTATGCGCGTTTA 58.648 50.000 7.78 0.00 0.00 2.01
184 185 1.296056 GGGTGAGTGTATGCGCGTTT 61.296 55.000 7.78 0.00 0.00 3.60
185 186 1.740296 GGGTGAGTGTATGCGCGTT 60.740 57.895 7.78 0.00 0.00 4.84
186 187 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
187 188 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
188 189 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
189 190 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
190 191 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
191 192 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
192 193 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
193 194 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
194 195 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
195 196 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
196 197 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
197 198 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
198 199 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
199 200 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
200 201 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
201 202 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
202 203 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
203 204 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
204 205 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
205 206 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
206 207 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
207 208 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
208 209 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
209 210 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
212 213 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
213 214 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
214 215 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
215 216 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
216 217 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
217 218 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
218 219 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
219 220 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
220 221 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
221 222 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
222 223 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
223 224 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
224 225 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
225 226 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
226 227 1.133009 AGAGGTGCTCATAGGGGTAGG 60.133 57.143 0.00 0.00 32.06 3.18
227 228 1.967066 CAGAGGTGCTCATAGGGGTAG 59.033 57.143 0.00 0.00 32.06 3.18
228 229 1.573857 TCAGAGGTGCTCATAGGGGTA 59.426 52.381 0.00 0.00 32.06 3.69
229 230 0.339859 TCAGAGGTGCTCATAGGGGT 59.660 55.000 0.00 0.00 32.06 4.95
230 231 0.755686 GTCAGAGGTGCTCATAGGGG 59.244 60.000 0.00 0.00 32.06 4.79
231 232 1.411977 CTGTCAGAGGTGCTCATAGGG 59.588 57.143 0.00 0.00 32.06 3.53
232 233 2.100584 GTCTGTCAGAGGTGCTCATAGG 59.899 54.545 1.75 0.00 32.06 2.57
233 234 3.023119 AGTCTGTCAGAGGTGCTCATAG 58.977 50.000 1.75 0.00 32.06 2.23
234 235 2.757314 CAGTCTGTCAGAGGTGCTCATA 59.243 50.000 1.75 0.00 32.06 2.15
235 236 1.549620 CAGTCTGTCAGAGGTGCTCAT 59.450 52.381 1.75 0.00 32.06 2.90
236 237 0.964700 CAGTCTGTCAGAGGTGCTCA 59.035 55.000 1.75 0.00 32.06 4.26
237 238 1.202114 CTCAGTCTGTCAGAGGTGCTC 59.798 57.143 1.75 0.00 0.00 4.26
238 239 1.255882 CTCAGTCTGTCAGAGGTGCT 58.744 55.000 1.75 0.00 0.00 4.40
239 240 0.389687 GCTCAGTCTGTCAGAGGTGC 60.390 60.000 1.75 7.64 31.57 5.01
240 241 0.246086 GGCTCAGTCTGTCAGAGGTG 59.754 60.000 1.75 4.34 31.57 4.00
241 242 1.247419 CGGCTCAGTCTGTCAGAGGT 61.247 60.000 1.75 0.00 31.57 3.85
242 243 1.510383 CGGCTCAGTCTGTCAGAGG 59.490 63.158 1.75 0.00 31.57 3.69
243 244 1.510383 CCGGCTCAGTCTGTCAGAG 59.490 63.158 1.75 0.00 33.62 3.35
244 245 2.640302 GCCGGCTCAGTCTGTCAGA 61.640 63.158 22.15 0.00 0.00 3.27
245 246 2.125753 GCCGGCTCAGTCTGTCAG 60.126 66.667 22.15 0.00 0.00 3.51
246 247 0.970427 TATGCCGGCTCAGTCTGTCA 60.970 55.000 29.70 2.45 0.00 3.58
247 248 0.390860 ATATGCCGGCTCAGTCTGTC 59.609 55.000 29.70 0.00 0.00 3.51
248 249 0.390860 GATATGCCGGCTCAGTCTGT 59.609 55.000 29.70 4.64 0.00 3.41
249 250 0.390492 TGATATGCCGGCTCAGTCTG 59.610 55.000 29.70 0.00 0.00 3.51
250 251 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
251 252 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
252 253 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
253 254 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
254 255 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
255 256 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
256 257 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
257 258 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
258 259 5.954296 AAAATCTCAAGATGATATGCCGG 57.046 39.130 0.00 0.00 34.49 6.13
259 260 7.425577 TGTAAAATCTCAAGATGATATGCCG 57.574 36.000 0.00 0.00 34.49 5.69
260 261 9.674824 CTTTGTAAAATCTCAAGATGATATGCC 57.325 33.333 0.00 0.00 34.49 4.40
265 266 8.734386 GGTGACTTTGTAAAATCTCAAGATGAT 58.266 33.333 0.00 0.00 34.49 2.45
266 267 7.719193 TGGTGACTTTGTAAAATCTCAAGATGA 59.281 33.333 0.00 0.00 34.49 2.92
267 268 7.874940 TGGTGACTTTGTAAAATCTCAAGATG 58.125 34.615 0.00 0.00 34.49 2.90
268 269 8.641498 ATGGTGACTTTGTAAAATCTCAAGAT 57.359 30.769 0.00 0.00 36.07 2.40
269 270 9.219603 CTATGGTGACTTTGTAAAATCTCAAGA 57.780 33.333 0.00 0.00 0.00 3.02
270 271 8.454106 CCTATGGTGACTTTGTAAAATCTCAAG 58.546 37.037 0.00 0.00 0.00 3.02
271 272 7.094377 GCCTATGGTGACTTTGTAAAATCTCAA 60.094 37.037 0.00 0.00 0.00 3.02
272 273 6.374333 GCCTATGGTGACTTTGTAAAATCTCA 59.626 38.462 0.00 0.00 0.00 3.27
273 274 6.374333 TGCCTATGGTGACTTTGTAAAATCTC 59.626 38.462 0.00 0.00 0.00 2.75
274 275 6.151144 GTGCCTATGGTGACTTTGTAAAATCT 59.849 38.462 0.00 0.00 0.00 2.40
275 276 6.322491 GTGCCTATGGTGACTTTGTAAAATC 58.678 40.000 0.00 0.00 0.00 2.17
276 277 5.185056 GGTGCCTATGGTGACTTTGTAAAAT 59.815 40.000 0.00 0.00 0.00 1.82
277 278 4.521256 GGTGCCTATGGTGACTTTGTAAAA 59.479 41.667 0.00 0.00 0.00 1.52
278 279 4.076394 GGTGCCTATGGTGACTTTGTAAA 58.924 43.478 0.00 0.00 0.00 2.01
279 280 3.329520 AGGTGCCTATGGTGACTTTGTAA 59.670 43.478 0.00 0.00 0.00 2.41
280 281 2.910319 AGGTGCCTATGGTGACTTTGTA 59.090 45.455 0.00 0.00 0.00 2.41
281 282 1.705186 AGGTGCCTATGGTGACTTTGT 59.295 47.619 0.00 0.00 0.00 2.83
282 283 2.359900 GAGGTGCCTATGGTGACTTTG 58.640 52.381 0.00 0.00 0.00 2.77
283 284 1.066143 CGAGGTGCCTATGGTGACTTT 60.066 52.381 0.00 0.00 0.00 2.66
284 285 0.537188 CGAGGTGCCTATGGTGACTT 59.463 55.000 0.00 0.00 0.00 3.01
285 286 0.614979 ACGAGGTGCCTATGGTGACT 60.615 55.000 0.00 0.00 0.00 3.41
286 287 1.067212 CTACGAGGTGCCTATGGTGAC 59.933 57.143 0.00 0.00 0.00 3.67
287 288 1.341679 ACTACGAGGTGCCTATGGTGA 60.342 52.381 0.00 0.00 0.00 4.02
288 289 1.067212 GACTACGAGGTGCCTATGGTG 59.933 57.143 0.00 0.00 0.00 4.17
289 290 1.400737 GACTACGAGGTGCCTATGGT 58.599 55.000 0.00 0.00 0.00 3.55
290 291 0.311165 CGACTACGAGGTGCCTATGG 59.689 60.000 0.00 0.00 42.66 2.74
291 292 1.306148 TCGACTACGAGGTGCCTATG 58.694 55.000 0.00 0.00 43.81 2.23
292 293 3.794737 TCGACTACGAGGTGCCTAT 57.205 52.632 0.00 0.00 43.81 2.57
302 303 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
314 315 3.586892 CTTTTAGTGGGAGGAGACGTTC 58.413 50.000 0.00 0.00 0.00 3.95
315 316 2.289506 GCTTTTAGTGGGAGGAGACGTT 60.290 50.000 0.00 0.00 0.00 3.99
316 317 1.275573 GCTTTTAGTGGGAGGAGACGT 59.724 52.381 0.00 0.00 0.00 4.34
317 318 1.736032 CGCTTTTAGTGGGAGGAGACG 60.736 57.143 0.00 0.00 0.00 4.18
318 319 1.275573 ACGCTTTTAGTGGGAGGAGAC 59.724 52.381 0.00 0.00 0.00 3.36
319 320 1.640917 ACGCTTTTAGTGGGAGGAGA 58.359 50.000 0.00 0.00 0.00 3.71
320 321 3.718815 GATACGCTTTTAGTGGGAGGAG 58.281 50.000 0.00 0.00 0.00 3.69
321 322 2.100252 CGATACGCTTTTAGTGGGAGGA 59.900 50.000 0.00 0.00 0.00 3.71
322 323 2.470821 CGATACGCTTTTAGTGGGAGG 58.529 52.381 0.00 0.00 0.00 4.30
336 337 1.847818 TCAAGAATTCCGGCGATACG 58.152 50.000 9.30 0.00 0.00 3.06
337 338 4.813296 ATTTCAAGAATTCCGGCGATAC 57.187 40.909 9.30 0.00 0.00 2.24
338 339 6.928979 TTTATTTCAAGAATTCCGGCGATA 57.071 33.333 9.30 0.00 0.00 2.92
339 340 5.828299 TTTATTTCAAGAATTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
340 341 5.220970 GGATTTATTTCAAGAATTCCGGCGA 60.221 40.000 9.30 0.00 0.00 5.54
341 342 4.976116 GGATTTATTTCAAGAATTCCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
342 343 5.901552 TGGATTTATTTCAAGAATTCCGGC 58.098 37.500 0.65 0.00 34.21 6.13
343 344 7.333528 TCTGGATTTATTTCAAGAATTCCGG 57.666 36.000 0.65 0.00 37.37 5.14
353 354 9.316730 GCTTGCATTTATTCTGGATTTATTTCA 57.683 29.630 0.00 0.00 0.00 2.69
354 355 9.316730 TGCTTGCATTTATTCTGGATTTATTTC 57.683 29.630 0.00 0.00 0.00 2.17
355 356 9.101655 GTGCTTGCATTTATTCTGGATTTATTT 57.898 29.630 0.00 0.00 0.00 1.40
356 357 7.712205 GGTGCTTGCATTTATTCTGGATTTATT 59.288 33.333 0.00 0.00 0.00 1.40
357 358 7.147689 TGGTGCTTGCATTTATTCTGGATTTAT 60.148 33.333 0.00 0.00 0.00 1.40
358 359 6.154192 TGGTGCTTGCATTTATTCTGGATTTA 59.846 34.615 0.00 0.00 0.00 1.40
359 360 5.046448 TGGTGCTTGCATTTATTCTGGATTT 60.046 36.000 0.00 0.00 0.00 2.17
360 361 4.467082 TGGTGCTTGCATTTATTCTGGATT 59.533 37.500 0.00 0.00 0.00 3.01
361 362 4.025360 TGGTGCTTGCATTTATTCTGGAT 58.975 39.130 0.00 0.00 0.00 3.41
362 363 3.429492 TGGTGCTTGCATTTATTCTGGA 58.571 40.909 0.00 0.00 0.00 3.86
363 364 3.429822 CCTGGTGCTTGCATTTATTCTGG 60.430 47.826 0.00 0.00 0.00 3.86
364 365 3.444742 TCCTGGTGCTTGCATTTATTCTG 59.555 43.478 0.00 0.00 0.00 3.02
365 366 3.445096 GTCCTGGTGCTTGCATTTATTCT 59.555 43.478 0.00 0.00 0.00 2.40
366 367 3.445096 AGTCCTGGTGCTTGCATTTATTC 59.555 43.478 0.00 0.00 0.00 1.75
367 368 3.434309 AGTCCTGGTGCTTGCATTTATT 58.566 40.909 0.00 0.00 0.00 1.40
368 369 3.091633 AGTCCTGGTGCTTGCATTTAT 57.908 42.857 0.00 0.00 0.00 1.40
369 370 2.557924 CAAGTCCTGGTGCTTGCATTTA 59.442 45.455 16.21 0.00 36.17 1.40
370 371 1.342174 CAAGTCCTGGTGCTTGCATTT 59.658 47.619 16.21 0.00 36.17 2.32
371 372 0.963962 CAAGTCCTGGTGCTTGCATT 59.036 50.000 16.21 0.00 36.17 3.56
372 373 0.111061 TCAAGTCCTGGTGCTTGCAT 59.889 50.000 20.58 0.00 41.15 3.96
373 374 0.106769 TTCAAGTCCTGGTGCTTGCA 60.107 50.000 20.58 12.56 41.15 4.08
374 375 0.312102 GTTCAAGTCCTGGTGCTTGC 59.688 55.000 20.58 10.19 41.15 4.01
375 376 0.954452 GGTTCAAGTCCTGGTGCTTG 59.046 55.000 19.84 19.84 42.32 4.01
376 377 0.178990 GGGTTCAAGTCCTGGTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
377 378 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
378 379 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
379 380 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
383 384 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
384 385 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
394 395 1.211567 TGGTATCCCAACCCACCAGG 61.212 60.000 0.00 0.00 37.98 4.45
395 396 0.034477 GTGGTATCCCAACCCACCAG 60.034 60.000 0.00 0.00 44.15 4.00
396 397 2.080201 GTGGTATCCCAACCCACCA 58.920 57.895 0.00 0.00 44.15 4.17
399 400 0.988832 GACAGTGGTATCCCAACCCA 59.011 55.000 0.00 0.00 44.15 4.51
400 401 0.255033 GGACAGTGGTATCCCAACCC 59.745 60.000 0.00 0.00 44.15 4.11
401 402 0.988832 TGGACAGTGGTATCCCAACC 59.011 55.000 0.00 0.00 44.15 3.77
402 403 1.339727 GGTGGACAGTGGTATCCCAAC 60.340 57.143 0.00 0.00 44.15 3.77
403 404 0.988832 GGTGGACAGTGGTATCCCAA 59.011 55.000 0.00 0.00 44.15 4.12
404 405 0.118346 AGGTGGACAGTGGTATCCCA 59.882 55.000 0.00 0.00 38.87 4.37
405 406 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
406 407 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
407 408 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
408 409 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
409 410 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
410 411 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
411 412 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
412 413 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
413 414 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
414 415 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
415 416 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
416 417 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
417 418 2.571653 CTGGTTGAGATGGTTAGGTGGA 59.428 50.000 0.00 0.00 0.00 4.02
418 419 2.571653 TCTGGTTGAGATGGTTAGGTGG 59.428 50.000 0.00 0.00 0.00 4.61
419 420 3.369892 CCTCTGGTTGAGATGGTTAGGTG 60.370 52.174 0.00 0.00 45.39 4.00
420 421 2.840651 CCTCTGGTTGAGATGGTTAGGT 59.159 50.000 0.00 0.00 45.39 3.08
421 422 2.840651 ACCTCTGGTTGAGATGGTTAGG 59.159 50.000 0.00 0.00 45.39 2.69
422 423 4.559862 AACCTCTGGTTGAGATGGTTAG 57.440 45.455 0.71 0.00 45.07 2.34
436 437 1.084370 GGATCGCGAACCAACCTCTG 61.084 60.000 28.33 0.00 0.00 3.35
437 438 1.218316 GGATCGCGAACCAACCTCT 59.782 57.895 28.33 1.02 0.00 3.69
438 439 1.814169 GGGATCGCGAACCAACCTC 60.814 63.158 32.68 15.59 0.00 3.85
439 440 1.910580 ATGGGATCGCGAACCAACCT 61.911 55.000 32.68 17.39 37.89 3.50
440 441 0.179067 TATGGGATCGCGAACCAACC 60.179 55.000 32.68 20.71 37.89 3.77
441 442 1.531149 CATATGGGATCGCGAACCAAC 59.469 52.381 32.68 19.01 37.89 3.77
442 443 1.414550 TCATATGGGATCGCGAACCAA 59.585 47.619 32.68 25.19 37.89 3.67
443 444 1.044611 TCATATGGGATCGCGAACCA 58.955 50.000 32.68 31.27 38.88 3.67
444 445 2.386661 ATCATATGGGATCGCGAACC 57.613 50.000 25.82 25.82 0.00 3.62
445 446 4.938080 AGATATCATATGGGATCGCGAAC 58.062 43.478 15.24 11.28 0.00 3.95
446 447 6.709018 TTAGATATCATATGGGATCGCGAA 57.291 37.500 15.24 0.00 0.00 4.70
447 448 6.901081 ATTAGATATCATATGGGATCGCGA 57.099 37.500 13.09 13.09 0.00 5.87
448 449 7.539022 GTGTATTAGATATCATATGGGATCGCG 59.461 40.741 0.00 0.00 0.00 5.87
449 450 7.539022 CGTGTATTAGATATCATATGGGATCGC 59.461 40.741 5.32 2.14 0.00 4.58
450 451 8.023706 CCGTGTATTAGATATCATATGGGATCG 58.976 40.741 5.32 0.07 0.00 3.69
451 452 9.078990 TCCGTGTATTAGATATCATATGGGATC 57.921 37.037 5.32 6.30 0.00 3.36
452 453 9.607333 ATCCGTGTATTAGATATCATATGGGAT 57.393 33.333 5.32 6.22 0.00 3.85
453 454 8.860088 CATCCGTGTATTAGATATCATATGGGA 58.140 37.037 5.32 4.43 0.00 4.37
454 455 7.600375 GCATCCGTGTATTAGATATCATATGGG 59.400 40.741 5.32 0.00 0.00 4.00
455 456 7.600375 GGCATCCGTGTATTAGATATCATATGG 59.400 40.741 5.32 0.00 0.00 2.74
456 457 8.143835 TGGCATCCGTGTATTAGATATCATATG 58.856 37.037 5.32 0.00 0.00 1.78
457 458 8.250143 TGGCATCCGTGTATTAGATATCATAT 57.750 34.615 5.32 0.37 0.00 1.78
458 459 7.654022 TGGCATCCGTGTATTAGATATCATA 57.346 36.000 5.32 0.00 0.00 2.15
459 460 6.544928 TGGCATCCGTGTATTAGATATCAT 57.455 37.500 5.32 0.00 0.00 2.45
460 461 5.993748 TGGCATCCGTGTATTAGATATCA 57.006 39.130 5.32 0.00 0.00 2.15
461 462 6.573434 TCATGGCATCCGTGTATTAGATATC 58.427 40.000 0.00 0.00 41.03 1.63
462 463 6.381133 TCTCATGGCATCCGTGTATTAGATAT 59.619 38.462 0.00 0.00 41.03 1.63
463 464 5.714806 TCTCATGGCATCCGTGTATTAGATA 59.285 40.000 0.00 0.00 41.03 1.98
464 465 4.528206 TCTCATGGCATCCGTGTATTAGAT 59.472 41.667 0.00 0.00 41.03 1.98
465 466 3.895041 TCTCATGGCATCCGTGTATTAGA 59.105 43.478 0.00 0.00 41.03 2.10
466 467 4.257267 TCTCATGGCATCCGTGTATTAG 57.743 45.455 0.00 0.00 41.03 1.73
467 468 4.563374 CCATCTCATGGCATCCGTGTATTA 60.563 45.833 0.00 0.00 44.70 0.98
468 469 3.405831 CATCTCATGGCATCCGTGTATT 58.594 45.455 0.00 0.00 41.03 1.89
502 503 4.819702 TTAGTGGTGGAGCTATACCCTA 57.180 45.455 14.45 12.16 36.10 3.53
576 578 3.555956 AGCTAAAATGCGTACAAGATCCG 59.444 43.478 0.00 0.00 38.13 4.18
592 594 4.905429 TGACAGCTTGTATTCCAGCTAAA 58.095 39.130 0.00 0.00 35.68 1.85
615 617 8.812513 ATTCAGACAATCTTTTCATACCATCA 57.187 30.769 0.00 0.00 0.00 3.07
654 657 6.995364 TGGGATGCATTGATGGTTAATAATG 58.005 36.000 0.00 0.00 34.51 1.90
675 678 6.966534 AAATACTGCTCAGGATTTTATGGG 57.033 37.500 12.95 0.00 46.86 4.00
763 775 5.568392 TCCCCGTCTCTATATAACCTCTTC 58.432 45.833 0.00 0.00 0.00 2.87
855 867 1.909302 TCTAGGCCTAACTGCTTTGCT 59.091 47.619 14.85 0.00 0.00 3.91
956 969 5.008019 CCTTGGTGCTATGTATTGCAAGTAG 59.992 44.000 4.94 6.00 39.99 2.57
969 982 0.676782 GGTTCACGCCTTGGTGCTAT 60.677 55.000 0.00 0.00 37.83 2.97
984 997 1.408822 CCCATGGTCTGGCTTAGGTTC 60.409 57.143 11.73 0.00 44.46 3.62
986 999 0.253160 TCCCATGGTCTGGCTTAGGT 60.253 55.000 11.73 0.00 44.46 3.08
1069 1083 2.028567 TGATGTCTATTGGCACACGTGA 60.029 45.455 25.01 0.00 39.29 4.35
1081 1095 5.344743 ACGTCTGGATTGTTGATGTCTAT 57.655 39.130 0.00 0.00 0.00 1.98
1130 1144 0.888619 TACCTGGTTCTCGTGCTCTG 59.111 55.000 3.84 0.00 0.00 3.35
1176 1190 2.359975 TCGCTCTCGGCTCTCACA 60.360 61.111 0.00 0.00 39.13 3.58
1196 1210 4.120589 GAGTAAGCCTAGTTCCAAATCGG 58.879 47.826 0.00 0.00 0.00 4.18
1197 1211 4.120589 GGAGTAAGCCTAGTTCCAAATCG 58.879 47.826 0.00 0.00 0.00 3.34
1202 1216 2.043939 TGGAGGAGTAAGCCTAGTTCCA 59.956 50.000 0.00 0.00 38.73 3.53
1233 1247 0.948623 CATCTCCGTTGGTTGCGTCA 60.949 55.000 0.00 0.00 0.00 4.35
1351 1376 8.481641 CAAATAATAATTGTTGCATCGACATGG 58.518 33.333 0.00 0.00 0.00 3.66
1379 1405 4.321899 GCACCTTGACATTCCTTATTTGCA 60.322 41.667 0.00 0.00 0.00 4.08
1389 1415 3.559238 ACGAAATGCACCTTGACATTC 57.441 42.857 0.00 0.00 35.49 2.67
1442 1469 3.244146 TGGCCATGAAACATCAACCAAAG 60.244 43.478 0.00 0.00 0.00 2.77
1447 1474 6.389830 TGTATATGGCCATGAAACATCAAC 57.610 37.500 29.04 9.58 0.00 3.18
1482 1509 1.270826 CAGGAGAAAGAGACACGCTCA 59.729 52.381 0.00 0.00 46.45 4.26
1642 1669 0.108329 TAGGCGGAAGAAAAGCGGAG 60.108 55.000 0.00 0.00 0.00 4.63
1688 1715 3.361158 TGCCGACGCAAATGTGGG 61.361 61.111 0.00 0.00 43.74 4.61
1827 1857 1.809619 CGTCGTCCATGGCGATTGT 60.810 57.895 26.40 0.00 40.59 2.71
1830 1860 2.202743 CACGTCGTCCATGGCGAT 60.203 61.111 26.40 14.06 40.59 4.58
1929 2002 0.868406 CGCTTCTTCTTCTTTGGCGT 59.132 50.000 0.00 0.00 37.03 5.68
2061 2141 0.396695 CGGGCACTAGTTCCCTCCTA 60.397 60.000 25.61 0.00 40.41 2.94
2068 2148 0.108756 GGTGACTCGGGCACTAGTTC 60.109 60.000 9.35 0.00 36.53 3.01
2122 2202 1.252904 CCTGTGATGGCCAGGGTTTG 61.253 60.000 13.05 0.00 44.77 2.93
2174 2254 4.467084 GGGAATGCCGACGAGCCA 62.467 66.667 0.00 0.00 33.83 4.75
2245 2327 2.743183 GCTTGCGGATAGACATGGAAGT 60.743 50.000 0.00 0.00 33.03 3.01
2293 2377 1.225426 GCCATGATGCTCACCTCCA 59.775 57.895 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.