>input_sequence_83581
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-----------------------------------------------------ATGGGAAATAGCCTCCTATTTGCTGTG
GCCATTGTAGTCATTTATGCCACGGCAGTTGTTGGTGCAGGTTCACGTGTGCCAATAGACATCAACAATCCAGACGTCCA
GCGACTTGGCAGGTGGGCGGTGGCAGAGCACGAGAACCAGGTACAGGACGAGATCAAATTCAACAAAGTTGTGAGAGCCG
AGAGCGACGCCGATTTGGAACTAGGCTTACTCCTCCATCTCTTCATTGACGCAACCAACGGAGATGGCAAGGATGCCAAG
TACGAGGCGGTTGTGGACCAGATTCGCGGG------AAACCCGATCTCTTGGACTTTAAGCCGGTTAACTGA--------
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----------------
>chr3A_1_TraesCS3A01G086600
CCTTACTACTCCCCTACTTATGAGATTGTCGAACTATTTGCATGTATATATACTTGTACATCGATCATGTATATGTATAT
GTATATGATGAACTAGTCACAAAGTCGCCATGTAGTTTCATTATATATCTGGATCCCATATGATATCTTTTTTTTGAACA
CAGTACAGATGCAAGCGCTCATATAAACGCGCATACACTCACCCCTATGAACGCACACACGCACACCCTACCCCTATGAG
CACCTCTGACAGACTGAGCCGGCATATCATCTTGAGATTTTACAAAGTCACCATAGGCACCTCGTAGTCGACGGGAACGT
CTCCTCCCACTAAAAGCGTATCGCCGGAATTCTTGAAATAAATCCAGAATAAATGCAAGCACCAGGACTTGAACCCTGGT
GGGTTGGGATACCACTGTCCACCTAACCATCTCAACCAGAGGTTGGTTCGCGATCCCATATGATATCTAATACACGGATG
CCATGAGATGGGCTTGCAACTATAGGGTATAGCTCCACCACTAAAATAGGTTTGTTTGCTAAAAAAACTAAAATAGGTTG
GTTATAGCCTCA-TATCCGGATCTTGTACGCATTTTAGCTGGAATACAAGCTGTCATGATGGTATGAAAAGATTGTCTG-
AATTGCTAGCTCAATGCATTATTAACCATCAATGCATCCCATAAAATCCTGAGCAGTATTTCTTTTGGACAG-------C
TTTTAACCAAAATTGATCCCAAAAATCATGTCAATCA-TT-TTTTACTAAATTTGAAGAGGTTATATAGAGACGGGGAAG
ATTTGATATGAACTAATGAATCCTTTCCAAAAAAACAAAAACAAATTATATTTGTAGCCATTTGCTAGCAAAGCA-GTTA
GGCCTAGAGCCCTATAAATGCCCCTAATCGTCATGAGTTGCAATACTCAGCACCAAGCTGTCCTCCCACGCCCTTACAGA
CACATATACTACTTGCAATACATAGCACCAAGGCGTGAACCTAAGCCAG-ACCATGGGAAATAGCCTCCTATTTGCTGTG
GCCATTGTAGTCATTTATGCCACGGCAGTTGTTGGTGCAGGTTCACGTGTGCCAATAGACATCAACAATCCAGACGTCCA
GCGACTTGGCAGGTGGGCGGTGGCAGAGCACGAGAACCAGGTACAGGACGAGATCAAATTCAACAAAGTTGTGAGAGCCG
AGAGCGACGCCGATTTGGAACTAGGCTTACTCCTCCATCTCTTCATTGACGCAACCAACGGAGATGGCAAGGATGCCAAG
TACGAGGCGGTTGTGGACCAGATTCGCGGG------AAACCCGATCTCTTGGACTTTAAGCCGGTTAACTGAGC--A---
AAAAAAGCATGATGACCATGTCGATGCAACAATTA-TTATTTGATGCAAATAAGGAATGTCAAGGTGCATTTCGTATAGT
ATGCATGTTTATGGACTCAA-TTTTAATCTTTGGTTGATGTTTCATGGCCATATACATTTTTTCTCCATGAGCGTGTCTC
TTTCTCCTGGATTATCTAGCACATACTTATTTTACTCATTTACTCATTAGAGCAAGTCCAATGCGCCGACCCATTTCGTT
CGCCCATGTTCATTTGGGTCAAAACGGACACAAAAGTTGGCCCAATGCGGCGACCCAAACGGACGCGTCTCCGCTTTTCT
TCCGCCTATCGACTCATTTCCGACCCAAATTTGACCCACATTTGCGTCGGCACGGACACGAAACGGATGCGCGCGACACC
CGCCTACTCC-TCCCCTGGCCCGCCAGTCGGCGGCACAGCCACACCCATTTCT--CCCACTTTCCCAAAAAAACTCCCAC
CCACTTCCGCTCTCGGACAATCGCCATGGACGACGTGCCGACCCTCGACATCGCCG------------------------
CCGGCCTCACCTCCGCCGCCCCTGCC----------AAAGGCAAGCCCCG---------CGCGGCCTGCAAGACCGCGGC
GACGCCAAAGAAGAA----GAAGCGGT---TGACGCCCGAGGAGTGGGCCATGCAGTCGGCCAAGAGGAAGGGCCAGAGG
CATGAGCAAGAACACAAGCTCGAAGCCGCGGCCGCGGCCGCCCTCTCGGCCACCACACAGTAGGAGGGAACTAGTGCCCG
AGTCACCGTGGCAATGAGGGAGGCCCTTCTCTACCTAGGGTCAAACCCTGGCCATCACAGGCTCGTCAGTACCGTTGTGG
CCGCGGCCAACACTGGCTCGTCGGCATTCCCTCGGGTGGTACTGCCAGAGTCACCGCG--CGTGTCTACCACGCAGCCGA
TTCCCGAC--TTCCATGTCTATCCGCAAGCCTCCCGCTTCTCCGGGGAATGCTCGCTGGAGGTGAGCATCATGGCGCTGT
CCACGCCTGTGCCCAT
>chr3B_3
--TTACTACTCCCCTACATATGAGATTGTCGAACTATTTGCACGTATATATACTTGTGCATGGATCATGTATTTGTATAT
GTATATGATGAACTAGTCACAAAGTCGCCGTGTAGTTTCATTATATATCTGTATCCCATATGATATCTG-----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------ATACGCAGATG
CCATGAGATGGGCTTGCAACTACAGGGTATAGCTCCACCACTAAAATAGGTTGGTTTGCTAAAAAAA-TAAAATAGGTTG
GTTATAGCCTCACTATCTGGATCTTGTACGCATATTAGCTGGAATACAAGCTGTCACGACGGTATGAAAAGATTGTCTG-
AATTCCTAGCTCAATGTATTATTAACCATCAATGTGTTCCTTCAAATCCTGAGCAGTATTTCTTTTGGACAGATCACTAT
TTTTAACCAAAATTGATCCCAAAAATCATGTCAATCA-TT-TTTTAGTAAATTTAAAGAGGTTATATAGAGACGGGGAAG
ATTTGGTACGAACTAATGAATCCTTTCCAAAAAA-CAAAAACAAATTCTATTTGTAGCCATTTTCTGGCAAAGCA-GCTA
GGCCTAGAGCCCTATAAATGCCCCTAATCGTCATGAGTTGCAATACTCGGCACCAAGTTGTCCTCCCACGCCCTTACAGA
CACATATAGTACTTGCAATACTTAGCACCAAGGCGTCACCCTAAGCCAG-ACCATGGGAAATAGCCTCCTATTTGTTGTG
GCCATTGTAGTCATTTACGCCACGACAGTTGTTGGTGCAGGTCCACGTGTGCCAGTAGACATCAACAATCCAGACGTCCA
GCGGTTTGGTAGGTGGGCAGTGGACGAGCATGAGAACCAGGTACAGGATGGGATCAAATTCAACAAAGTGGTGAGAGCCG
AGAGCGATGATGATTCGGAACTAGGCTCACTCCTCCATCTCTTCATCGACGCAACCAACGGAGATGGCAAGGATGCCAAG
TACGAGGCAGTTGTGGACCAGATTTGTGGA------AAACCCGATCTCTTGGACTTTAAGCCGGCTAACTGAGC--AG--
AAAAAAGCATGATGATCATGTAGGTGCAACAATTTATTATTTGACACAAATAAGCAATGTCAAGGTGCATTTCGTATAGT
ATGCATGTTTATGGACTCAGTTTTTAATATTTGATTGATGTTTCATGGTCATATACATTTTTTCTCCACGAGTGTGTCTC
TTTCTCGTGGACTATCTAGCATATACTTATTTTACTCATTTACTCATTAGAGCAACTCCAATGCGCCGACCCATTTCGTC
CGCCCGTGTTCATTTGGGTCAAAACGGACACAAAAGTTCGCCCAATGTGCCGACCCAAATGGATGGGTGTCCGCTTTTCG
TCCGCCTGTCGATTCATTCCCGACCCAAATTTGAGCCACATTTGCGTCGGCGCAGACACGAAACGGACGCGAGCGACACC
CTCCTACTCC-TCCCCTGGCCCGCTAGTCAGCGTCACAACCACACCCATTTCT--CCTACTTTCCCA-AAAAACTCCCGC
CCGCTCCCGCTCTCGGCCGCTCGCCATGGACGACGTGCCGACCGTAGACGTCGCCGA-----------------------
-CGGCCTCACCTCCGCCGCATCCGCC----------AAAGGAAAGCCCCG---------CTTGG-CCTGAAGACCACGGC
AGCGCCAAAGAAGAA----GAAGTGGT---TGACGCCCGAGGAGAAGGCCATGCAGTCGGCCAAGAGGAAGGGCCGGAGG
CACAAGCAACAACGCAAACTCGAAGCCGCAACCGCCGCTGCCCTCTCGGCCACCGCACAGCAGGAGGAAACCAGCGCCCG
AGTTGCAGTGGCAATGAGGAGGGCCCTTCTCTACCTAGGGTTAAACCCTGGCCATCACAGGCTCTTCAGTGCCGTTGTGT
TCGCGGCCAACATGGGCTCATCGGCATTCCCTCGAGTGGTACTACCAGAGTCGCCGTG--CTCATCTACCACATAGCCGA
TTCCCAGC--TTCCATGTCTATCCGCAAGCCTCCCGCTTCTCCTGGGAATGCTCGCCGAAGGTGAGCATCGTGGCGTTGT
CCATGCCTGTTCCCAT
>chr3B_496
--------------------------------------------------------------------------------
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---------------GCAACTACAGTGGATAGCCCCACCACTAAAATAGGCTGGTTTACTAAAGAAACTAAAATAGATTG
GTTATAGCCTCACTATCTCGATCTTGTAGGCCTATTAGCTGGAATACAAGCTGTCACAACGGTATGGAAAGAATTTTTTT
GATTGCTAGCTCAATGTATTATTAACCGTCAATGCATTCTTTCAAATCCTGAGCAGTATTTCTTTTGGACAGATCACTCT
TTTTAACCAAAATTGATCCCAAAAGTCACGTCAATCA-TTTTTTTACTAAATTTAAAGAGGTTATATAGAGAGGGGAAAG
ATTTGATACGAACTAATGAATTCTTTCCAAAAAA----AAAGAAATTCTATTTTTAGCCATTTGTTGGCAAAGCA-GCTA
GGCCTAGAGCAATATAAATGCCCCTAATCGTCATGTGTTATTTCCCCCAAGCAAATACAACTTGCA-----CCTTACAGA
TACAG-----ACTTGCAATACTTAGCACCAAGGCGTCATCCCAAGCCAAAACCATGGGAAATAGCCTCCTATTTGCTGCG
GCCATCGTAGCCATTTGCGCCATAGCGGTTCTTGGTGCAGGTCCA------CCAGTGGACATCAACAATCCACACATTCA
ATGGCTTGGCAGGTGGGCGGTGGAAGAGCACGTCAGGCTGGTACAGGACGAGATCAAATTCAACAAAGTGGTGAGAGCCG
AGAGTGACGATGAGTCGGAACTAGGCGTGCTCCTCCATCTCTTCATCGATGCAACCAACAGAGATGGCAAGGACGCCAAG
TACGAGGCGGTGGTGGACCAGATTTGCGGGATATATAAACCCGGTCTCTTGGAATTTAAGTCGGCTAACTGAGC--AAAA
AAAAAAGCATGATGATCATGTTGATGCAATAATTAATTATTTGACGC-AATAAGCAATGTCTAGGTGCATTTCGTATAGT
ACGAATGTTTGTGGACTCGG-TTTTGTATCT---TTGATGTTTCACAGTCATATAACAAATTTCTCCACGGTCGTGTTTC
TCTCT---------------------------------------------------------------------------
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----------------
>chr3D_496
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---------------GCAACTACAGTGTATAGCTCCATCACTAAAATAGGTTGGTTTGCTAAAGAAACTAAAATAGATTG
GTTATAGCCTCACTATCTGGATCTTGTAGGCCTATTAGCTGGAATACAAGTTGTCACAATGGCATGGAAAGATTTCTTTT
AATTGCTAGCTCAATGTATTATTAAACCTCAATGCATTCTATCAAATCCTGAGCAGTATTTCTTTTGGACAGATCACTCC
TTTTAACCAAAATTGATCCCAAAAATCATGTCAAACATTTTTTTTACTAAATTTAAAGAGGTTATATAGAGACGGAGAAG
ATTTGATACGAACTAATGAATTCTTTTCAAAAAAG------GAAATTCTACTTTTAGCCATTTGTTGGCAAAGCA-GCTA
GGCCTAGAGCAATATAAATGCCCCTAATCGTTATGAGTTATCTCCT-CCAGCAAATACAACTTGCA-----CCTTACAGA
TACAG-----ACTT-CAATACTTAGCACCAAGGCGTCATCCCAAGCAAAAACCATGGGAAATAGCCTCCTATTTGTTGTT
GCCACTGTAGCCATTTGCGCCATGGCGGTTCTTGGTGCGGGTCCA------CCAGTAGACATCAACAATCCACACATCCA
ATGGCTTGGCAGGTGGGCGGTGGAAGAGCACGTCAGGCTGGTACAGGACGGGATCAAATTCAACAAAGTGGTGAGAGCCG
AGAGTGACGATGAGTCGGAACTAGGCGTGCTCCTCCATCTCTTCATCGATGCAACCAACGGAGATGGCAAGGATGCCAAA
TACGAGGCGGTTGCGGACCAGATTCACGGGATATATAAACCCGGTCTCTTGGAATTTAAGCCGGCTAACTGAGC--AAAA
G-AAAGGCATGATGATCATGTTAATGCAATAATTAATTATTTGACGC-AATAAGCAACGTCAAGGTGCATTTCGTATAGT
ACGCATGTTTATGGACTCGA-TTTTAAATCT---TTGATGTTTCATGGTCATATAAAAAATCTCTCCACGGTCGTGTCTC
TCTCTTCAAGATTACCTA--------------------------------------------------------------
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----------------
>chr3A_834
--------------------------------------------------------------------------------
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--------------------------------------------ATTCTATTTTCAGCCATTTTGTTAACAAAACTGCTA
GGCCTAGAGCAATATAAATGCCCCTAATCGTCATGTATTACCT--CCCCAGCAAATACAACTTGCA-----CCTTACAGA
TATAG-----ACTTGCAATAGTTAGCACCAAGGCGTCATCCCAAGCCAG-ACCATGGGAAATAGCCTCCTATTTGCTGTG
GCCATTGTAGCCATTTACGCCATGGCGGTTCTTGGTGCAGGTCCA------CCAGTAGACATCAACAATCCACACATCCA
ATGGCTTGGCAGGTAGGCGGTGGAAGAGCACGTCAGACTAGTACAGGA-GGGATCAAGTTCAACAAAGTGGTGAGAGCCG
AGAGTGACGATGAGTCGGAACTAGGCGTGCTCCTCCACCTCTTCATCGATGCAACCAACCGAAATGGCAAGGATGCCAAG
TACGAGGCGGTTGTAGACCAGCTTCGCGGGATATATAAACCCGGTCTCTTGAAATTTAAGCCGGCTAGTTGAGAAAA---
AAAAAAGCACGATGATCATGCTGATGCAATAATTAATTATTTGACGC-AATAAGCAACGTCTATGTGCATTTCGTATAGT
ACGGAAGTTTATGGACTTGA-TTTTGTATCT---TTGATGTTTCATAGCCATATAAAAAATTTCTCCACAGTCATGTCTC
TCTTTTCTAGATTACCTAG-------------------------------------------------------------
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----------------
>chr5A_1533
TTTCTC--------------------------------------------------------------------------
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----------------------------------------------TTAGAGCAACTCCAACGCGCCGACTCATTTCATC
TGCGCGTATTTGTTTCGATC-AAAAGGACACAAAAGTCGGTTCAACGCGCCGATCCAAATGGAAGTGCGTCTGTCTTTTG
TCCCTTAA---ACTTATTCCCGGCCTAAATTTGAGTCTTATTTGCGCCGACGCGGACATGAAACGGACGCGCCCGACGCC
CGCCTACTT--TCCCCTGGTTCGTCAGTCGGCGGCACAGCCACCACCATTTCGC-CCCACTTTCCCA-AAA-ACTCCCGC
CCGCTCGCGCTCCCGTTCGCTAGCGATGGACGACGTGCCGACCCTCGACGCCGCCATCGGCCTCGCCTC---------GT
CCGGCCTCACCTTCGTCACCTCCACC----------AAAGGCAAGCCCTG---------CGCGCCC-ACAAAACTGAGGC
GCCACCC---AAGAA----GAAGTAGT---TGACGCCCAAACAGCGGGGCATGCAATCAGCCAAGAGGAAGGGGCGGAGG
CATACGTAGGACCGCAAGCTCGAAGCCGCGGCCGCCGCCGCCCTCTCCGCCGCCGCACAGCAGGAGGAAACCAATGCTCG
AGTCACCGAGGCAACGAGGGAGGCCCTGCTCTACCTAGGGTTAAACCCTGGCCATCACCAGCTCGTCAGCGTCGTCGTGG
CCGCGACCACCATAGGCTCGTCGGCATTTCCTCGGGTGGGACTGCCAAAGTCACCGCG--CGCGTCTGCCACACAGCCGA
TTCCCGGC--TTCCATGTCTATCCGCAAGCCTCCCGCTTCTCCGGGGAATGCTCGCCGGAGGTGAGC-------------
----------------
>chr4A_1537
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------------------------------------------CTCTTTAGAGCAACTTCGACGCGCCGATCCATTTCGTC
CGCGTGTGTCCGTTTGGGTCACCGCAGACAGAAAAGTCGGCCCAACGCACCGACCCAAACAGACAGGCATCCCCTTTTTG
TCCGCCTGCCGACCCATTCGCGGCCCAAATTTGAGTCTCATTTGCATTGGTGCGGATACGAAATGGACACGCGCGATGCG
CGCCTACTCC-TCCCCCTGGCCGCCAGTCGGTGGCGCAGCTACCACCATTTCCC-TCCACTTCTCCA-AAACCCTCCCAC
CCTCTCGCGCTCCAGGCCGCTCGCCATGGACGACGTGCCGACCCTCGATGCCGCCACCAGCCTCGCCTC---------GT
CCAGCCTCACCTCCGCCGCCTCCGCC----------AAAGGTAAGCCCCG---------CGCGCCCCACAAGACCGCCGT
GCCACCA---AAGAAGAAGAAAGTAGC---TGACGGCCGAGGAGCGGGTCGTGCAGTCGACCAAGAGTAAGGGCTGGAGG
CACGCGCGGGACACAAGGGACGAACCGGTGGCCGTTACCGCCCTCACTGCCGCCACACGGGAGGAGGAAACCAACGCCCG
AGTCACCACGGAAATGAGGGAGGCCCTGATCTACCTAGGGTTAAACCCTGGCCAGCACGGGCTGGTCAGCGCCGCCGTGG
CCGCGACCAGCACGGACTCATCGGCATTTTCACGAATGGTGCTGCCAGAGTCACC--AGGTGCGTCTGCCACATAGCCGA
TTCCCGGC--TTCCGCGTCTACCCGC------------------------------------------------------
----------------
>chr7D_1540
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---------------------------------------------ATAAGAGCAACTCCAACACGCCGATCCATTTCGTC
CTCGCATGTCCGTTTGAGTCAAAACGGACACAAAAATCGGCCCAACGCATCAACCCAAGCGGACGCGCGTCCGCTTTCCG
TCCGCCTGGTGACCCATTCATGGCCCAAATTTGGGCCTCAATTGCGTCGGCGCGGACACAAAGCATACGCGCGCGACGCG
CGCCTACTCC-TCCCCTGGCCCACTAGTCGGTGGCACAGCGACCATCA-TTCCC-TCCACTTTTCTA-AAACACTCCCGC
CCGCACGCGCTTCCGGTCGCTCGCCATGGACGCCGT---------------CGCCGCCGGCCTCGCCTCCTGCGCCTCGT
TCG---------GCCTCACCTTCATCGCCTCCGCCAAAAGGCAAGCCCCG---------TGCGCCCCGCAAGACCGCGGC
GCCGCCC---AAGAA----AAAGCAGC---TGACGCCCGAGGAGCGGGGCATGCAGTCGACCAAGAGCAAGGGCCAGAGG
CACGCGCAGGACACAAAGATCAAAGCAGCGGCCGTCGCCGCCCTCTCTGCCGCCGCATAGCAGGAGGAAACCAATGCCCG
AGTCGCTGCGGCAACGAGGGAGACCATGCTCTACCTAGGGTTAAACCCTGGCCAGCACGGGCTCGTCAGCGCCACTGTGG
CTGCGGCCAGCACCGGCTCGTCGGCATTTCCTCGGATGGTGCTGCCAGAGTCGCC--GCGCGTGTCTGCCACGCAGCCAA
TTCCTGCC--TTCCATGTCTATCCGCAAGCCTCCCGCTTCTCCGGGGAATACTCACCGGAGGTGAGCGTGGTGGCACCGG
CCACGCCCGCGCCC--
>chr2D_1541
--------------------------------------------------------------------------------
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----------------------------------------------TTAGAGCAACTCCAACGCGGGTACCCATTTCGTC
TGCGTGTGTCCGTTTGGGTCACCGCGGACAAAAAAGTTGGTCCAATGGGCCGACCCAAACGGACGTGCGTCTGCTTTTCA
TCCGCCTGCTGACCAATTTCTGGCCCAAATTTGGGCCTCATTTACGTCGGCGCAGACACGAAGTGGAATGTCGCGACGCG
CGCCTACTCCTCCCCCTGGCCCGCCAGTCGGTGGCAAATCGACCACCA-CTTCCCTCCA-CTTTCCC-AAAACCTCCCGC
CCGCTCGCGCTCCCACCCACTCACCATGGACGACGA------CCTCGATGCCGCTGCCGGCCTCGCCTCCT-CGCCTAGT
CCGGCCTCACCTCTGACCCCTCCGGC----------AAAGGCAAGCCACG---------CACCCCCCGCAAGACCGCCGC
CGCGCCC---AAGAA----GAAGAAGCAGCTCACGCCCGAGGAGCGGGCCGTGCAGTCGGCCAAGAGAAAGGGCCGGAGG
CACGCGGCGAACGCAAAGGACGAAGCAGCGGCCGTCGCCACCCTCACCGTCGCCGCACAGCAGGAAGAAACCAATGCCCG
AGTCGCGGCGGCAACGAGGGAGGCCCTGATCTACCTAGGGTTAAACCCTG-CCATCACGGGCTCGTCAACACCGCCGTTG
CGGTGGCTAGCATGGTCTCGTCTGCATTTCATCGGATGATGCTGCCAGAGTCGCC--GCGCGCGTCTTCCATGCACCCGA
TTCCCGGCGCTCCCACGTCTATCCGCAGGCCTCCCGCTTCTCCGGGGAATGCTCGCCGGAGGTGAG--------------
----------------
>chr4B_1541
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----------------------------------------------TTAGAGCAACTCCAACGTGCCGACCCATTTCGTC
CGCGCGTGTCCGTTTGGGTCAAAATGGACACAAAAGTCGGCCCAACGCATCGACCCAAACAGACGCGCGTCCGCTTTTCG
TCCGCCGGGTGACTCATTCCTAGCCCAAATTTGGGCCTCATTTGCGTCGACGTGGACACGAAGCG---------GACGTG
CGCCTAATCCTCCCCCTGGCCCGCCAGTTGGTGGCACAGCGACCACCA-TTTCCCTCCA-TTTTCCA-AAACACTCCCGC
CAGCTTGCGCTCCCGGCCGCTTGCCATGGACGATGTGCCGACCCTCGATGCCGCCG------------------------
CCGGCCTCCCCTCTGTCACCTCTGCC----------AAAGGCAAGCCCCG---------CGCGCCCCGCAGGACCGCGAC
GCCGCCC---CAGAA----GAAGCAGT---TGATGCCCGAGGAGCGGGCCATGCAGTCGGCCAAGAGGAAGGGCTGGAGG
CACATGCAGAATGCAAAGCTCGAAGCAGCGGCCGTCGCCGCCCTCTCCGCCGCCGCACAGCAGGAGGAAACCAATGCCCG
AGTCGCTGCAGCAACGAGGGAGGCCCTGCTCTACCTAGGGTTAGACCCTGGCCAGCACGGGCTCGTC-------------
--------------------------------------------------------------------------------
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----------------
>chr3D_1543
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------------------------------------------------AGAGCAACTCCAAAGTGCCGACCTATTTTGTT
CGCGCGTGTCCGTTTGGGTCACCGCGGACAGAAAAGTTGGCCCAACGCACCAACCCAAACGGACGCGCGTCCGCTTTTCA
TCCGTCTGCCGACCCATTCCTGACCCAAATTTGAGTCTCATTTGCGTCGGCGCTGGTA-GAAACGGACGCGCGGGGCGCT
CGCCTACTCC-CCCCATGGCCCGCCAGTCGGTGGCATAGCGACCACCA-TTTCCCACCACTTTCCCA-AAACCCTCCCGC
CCGCTCGCGCTCCCGGCA-------ATGGACGACGTGCCGACCCTCGATGCCGCCACTAGCCTCG---------CCTCGT
CTGGCCTCACCTTCGTCGCCTCCGCC----------AAAGGCAAGCCCCGTGCGGCCTGCGCGCCCCGCAAGACCGCGGC
GCAACCC---AAGAA----GAAGAAGC---TGACGCCCGAGGAGCGGGCCATGCAGTCGGCCAAGAGGAAGGGCCGGAGG
CACGCGCAAGATGCAAGGGACGAAGCGGCGGCCGTCGCCACCCTCACCGCCGCCACATAGCAGGAGGAAACCAATGCCTG
AGTCACCGCGACAATGAGGGAGGCCCTGATCTACCTAGGGTTAAACCCTAGCCAGCACGGGCTCGTCAGCACCGTCGTGG
CCACGGCCAGCACGGGCTCGTCGGCATTTCCTTGGATGGTGCTGCCAGATTCACCCTG--CGCGTCTGCCACGCAACCGA
TTCCCGGC--TTCCATGTCTATCCACAAGCCTCCCATTTCTCAGGGGAATGCTCGCCGGAGGTGAGTGTGATGGCGCCGT
CCACGCCCGTGCCC--
>chr6A_1543
--------------------------------------------------------------------------------
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------------------------------------------------AGAGCAACTCTAACACGCCGACCCACTTCGTC
CGCGCGTGTCCGCTTGGATCGTCGCAGACAGAAAAGTTGGCCCATCGCGCCGACCTAAACGGACGCGCGTCCGCCTTTCG
TCCGCCTCCCAATTCTTTATCGACCAAAATTTGAGTCTGAATTGCGTCCGCGCGGACACGAAACGAACGCGTGCAACACG
CGCCTACTCC-TCCCCTGGCCCGCCAGTCGGTAGCACAACGACCACCA-TTTCCCTCCACTTTCCCA-AAACCATTCCGC
CCGCTCGCGCTCCCGGCCGCTTGCCATGGACGACACGCTGACCCTCGATGCCGCCGCCGGCCTCGCCTCCATCGGC----
CTGGCCTCACCTCCGTTGCCTCCGCC----------AAAGGCAAGCCCCG---------CGC-CCCTGCAAGACCGCTGC
ACCGCCC---AAGAA----GAAGAAGCAACTGACGCGCAAAGAGCGGGCCATGCAGTCGGCCAAGAGGAAGGACCGGAGG
CGCGCGACGGACATAAGGGGCGAAGCAGCGGCCGTCGTCGCCCTCTTCGTCGCCGCACAGCAGGAGGAAACCAATGCCCG
AGTCGCCGCGGCAACGAGGAAGGCCCGT-TCTACCTAGGGTTAAACCCTGGCTAGCACGGGCTCGTCAGCGTCGCGGTGG
CCGCGGCCAGCACGGGCTCGTCGGCATTTCCTCAGATGGTGCTGCCATAGTCGCC--G--CGCGTCTGCCACGCAGCCCA
TTCCCGGC--TTCCACGCCTATCTGCAAGCCTTCCGCTTCTCCGAGGAATGCTCGCCGGAGGTGAGCATGGTGGCGCTGT
CCACGGCCGCGCCC--
>chr4D_1545
--------------------------------------------------------------------------------
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--------------------------------------------------AGCAACTCCAATGCACCGACTCATTTCGTC
CGCACGTGTGCGTTTGGGTCGCCGCAGACAGAAAAGTCGGCCGAACGCGCCGACCCAAACGGACGAGCGTCCACTTTTCG
TCCGCCCGCCGACCCATTCCCGGCCCAA-TTTGAGTCTCGTTTGCGTCGACACGGACACGAAACGGACGAGCACGACGCG
TGCCTACTCCTCCCCCTGGCCCGCCAGTCGGTGGCACATCGACCACCA-TTTTCCTCCACCTTCCCA-AAACCCTCCCAC
CCGCTCGCGCTCCCAGCCGCTCGCCATGGACGACGCGCCGACCCTCGATGCCGCCGCCTGCATCGCCTCCCTCGCCTCGT
CGG---------TCCTCGCCTCCGCC----------AAAGGCAAGCCCGG---------TGAGCCCTGCAAGACCGCATC
GCTGCCC---AAGTA----GAAT---CAGCTGACGCCCGATGAGTGGGCCTTGCAGTCGGCCAAGCGGAAGGGCCGGAGG
CACGCACAGGACGCAAGAGACGAAGCGGCAGCCGTTGCCGCCCTCTCCGTCACCGCACAACAAGAGGAAAATAATGCTCG
AGTCGCCGCGGCAAGGAGCGAGGCCCTGATCTACCTAAGGTTAAACCCTCGCCAGTACGGGATCATCTGTGTCGTCCTGG
CCGTGGCCAGCACGGGCTAGTCGGCATTTCCTCGGATGGTGCTGCCATAGTCGCC--ACGCGCGTTTGCCACGCATCTGA
TTCCTGGC--TTCCACGTCTATCTACAAGCCTCCCGCTTCTCCGGGGAATGCTCGCCGGAGGCAAGCGTGGTGGCGCCAT
CCACG-----------
>chr5D_1606
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-------------------------------AAAAATCGGCCCAACGCTCCGACCCAAACGGACGCGCGTCTGCTTTTCG
TCCGTCTGGCGACCCATTCCTAGCTCAAATTTGAGCCACATTTGCTTCGACGCAGATACGAAGCGGGCG---------CG
CGCCTACTCCTTCTCCTGGCCCGCTAGTTGGTGGCACAACGACCACCA-TTTCCCTCCACTTTCCCA-AAACACTTCCGC
CCACTCGCGCTCCCAGCCGCTCGCCATGGACGACGCGCCGACTGTCGATGCCGCCGCCGGCCTCGCCTCCCTCGCCTCGT
CCGGCCTCACCTTCGTCGCCTCCGCC----------AAAGGCAAGCCCTG---------CGCGCCCCGCAAGACCGCAGC
GCCGCCC---AAGAA----GAAGCAGC---TCACGCCTGTGGGGCGGGCCGTGCAGTTAGCCAAGAGGAAGGGCCGGAGG
CACGCGCAAGACGCAATGGACGAAGCAGCGGCCATCGCTGCCCTCTCTGCCGCCTCACAGCAGGAGGAAACTAATGCCCG
GGTCGCCGCGGCAACGAGGGAGGCCCTGCTCTACCTAGGGTTAAACCTTGGCCAGCACGGGCTTGTCAGCGCCACCGTGG
TCGCGGCCAGCATGGGCTCGTCGACATTTCCTCAAATGGTGCTGCCAGAGTCACC--GTGCGCGTCTGCCACATAGCCGA
TTCCCGGC--TTCCACGTCTATCCGCAAGCCTCCCGCTTCTCCGGGGAATGCTCACCGAAGGTGAGC-------------
----------------
>SNPs
SS---------------S------------------------S--------------S---S----------S-------
-----------------------------S---------------------S----------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S----
----------------------S-----------------------------S---------------------------
-----------------S---------------S----------------------S-----------------------
----------------S--------------------S----S-------------------------------------
------------------------------------------------------S-------------------------
--------S-------------------------S------------S------------------S----------S--
--------------------------------------------------------------------------------
--------S------------S--------------S-S-----------------------------------------
-----------------S------------------------S-----------S-------------------------
---S-------------------S---------------------------------------------S----------
---------SS----S------------------------------S---------------------------------
----------------------------------------------------------------S---------------
---------------S-----S----------------------S---------S-------------------------
----------------------------S----S----------------------------------S-----------
---------------------S---------------------------------S------------------------
-------------------------------------------------S------------------S----------S
----------------------------------S--------------------------------S------------
-------------------------------------------------------------------S------------
----------------S--S-----------------------------S------------------------------
--------------------S-----------------------------------------------------------
-S------------------------------------------------------------------------------
-------------S---------------------S------------------------S------S------------
-----------------------------------------S--------------------------------------
-------------S------------------------------------------------------------------
------S-------------------------------------------------S-----------------------
----------------
>forward_999
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACATAGCACCAAGGCGTGAA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_2148
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GAACTAGTGCCCG
AGTCACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
