Multiple sequence alignment - TraesCS3A01G085900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G085900 chr3A 100.000 4718 0 0 1 4718 55506325 55501608 0.000000e+00 8713.0
1 TraesCS3A01G085900 chr3D 89.619 2601 164 53 259 2781 43788515 43791087 0.000000e+00 3210.0
2 TraesCS3A01G085900 chr3D 89.683 1134 81 21 3252 4366 43729185 43728069 0.000000e+00 1413.0
3 TraesCS3A01G085900 chr3D 89.427 558 48 6 3252 3801 43791577 43792131 0.000000e+00 693.0
4 TraesCS3A01G085900 chr3D 90.058 342 30 3 4381 4718 43728084 43727743 1.560000e-119 440.0
5 TraesCS3A01G085900 chr3D 88.782 312 32 3 3808 4117 43730120 43729810 3.450000e-101 379.0
6 TraesCS3A01G085900 chr3D 86.380 279 29 5 3831 4102 43792128 43792404 3.570000e-76 296.0
7 TraesCS3A01G085900 chr3D 100.000 32 0 0 1 32 43788369 43788400 5.100000e-05 60.2
8 TraesCS3A01G085900 chr3D 100.000 28 0 0 4170 4197 43792418 43792445 9.000000e-03 52.8
9 TraesCS3A01G085900 chr3B 95.556 2025 54 16 2372 4366 68349652 68347634 0.000000e+00 3208.0
10 TraesCS3A01G085900 chr3B 89.021 1594 89 33 807 2360 68356356 68354809 0.000000e+00 1895.0
11 TraesCS3A01G085900 chr3B 89.191 1508 92 27 595 2075 68441935 68443398 0.000000e+00 1816.0
12 TraesCS3A01G085900 chr3B 85.930 860 74 22 3252 4095 68444481 68445309 0.000000e+00 874.0
13 TraesCS3A01G085900 chr3B 89.913 575 52 5 2209 2781 68443569 68444139 0.000000e+00 736.0
14 TraesCS3A01G085900 chr3B 90.596 319 27 3 4381 4696 68347649 68347331 2.030000e-113 420.0
15 TraesCS3A01G085900 chr7B 90.030 331 28 5 4392 4717 589693047 589692717 1.570000e-114 424.0
16 TraesCS3A01G085900 chr7B 90.503 179 15 2 4381 4557 589730782 589730960 7.890000e-58 235.0
17 TraesCS3A01G085900 chr7D 88.393 336 29 8 4392 4717 545620577 545620242 3.420000e-106 396.0
18 TraesCS3A01G085900 chr7D 79.741 232 42 4 1274 1504 376555269 376555496 3.780000e-36 163.0
19 TraesCS3A01G085900 chr1A 81.899 337 51 8 1676 2004 314430894 314431228 4.650000e-70 276.0
20 TraesCS3A01G085900 chr1B 80.882 340 55 8 1676 2007 368222505 368222168 4.680000e-65 259.0
21 TraesCS3A01G085900 chr7A 81.481 189 26 6 1274 1459 424311809 424311991 3.800000e-31 147.0
22 TraesCS3A01G085900 chr2A 75.987 304 51 13 3375 3663 515481162 515480866 2.290000e-28 137.0
23 TraesCS3A01G085900 chr4A 98.571 70 1 0 4480 4549 615413139 615413208 1.780000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G085900 chr3A 55501608 55506325 4717 True 8713.0 8713 100.000000 1 4718 1 chr3A.!!$R1 4717
1 TraesCS3A01G085900 chr3D 43788369 43792445 4076 False 862.4 3210 93.085200 1 4197 5 chr3D.!!$F1 4196
2 TraesCS3A01G085900 chr3D 43727743 43730120 2377 True 744.0 1413 89.507667 3252 4718 3 chr3D.!!$R1 1466
3 TraesCS3A01G085900 chr3B 68354809 68356356 1547 True 1895.0 1895 89.021000 807 2360 1 chr3B.!!$R1 1553
4 TraesCS3A01G085900 chr3B 68347331 68349652 2321 True 1814.0 3208 93.076000 2372 4696 2 chr3B.!!$R2 2324
5 TraesCS3A01G085900 chr3B 68441935 68445309 3374 False 1142.0 1816 88.344667 595 4095 3 chr3B.!!$F1 3500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 291 0.175760 TAGCTCGAGTTCCATGGCAC 59.824 55.0 15.13 6.65 0.00 5.01 F
1833 1944 0.035056 CCTTCCTGGTCACCATGGAC 60.035 60.0 21.47 6.93 33.10 4.02 F
1989 2121 0.179111 ATGACCAGTATGACACCGCG 60.179 55.0 0.00 0.00 39.69 6.46 F
2735 2941 1.452145 ATGGTGTTGCACGGTCAACC 61.452 55.0 16.03 6.40 44.15 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2161 0.107654 GGCGTGGAGGAAGCAGTAAT 60.108 55.0 0.0 0.0 0.0 1.89 R
2933 3166 0.108138 CTTCAGTCAGGGGCCGTAAG 60.108 60.0 0.0 0.0 0.0 2.34 R
2936 3169 0.325296 TATCTTCAGTCAGGGGCCGT 60.325 55.0 0.0 0.0 0.0 5.68 R
4226 4533 0.896923 GATTGGTGCATTCTTGGCCA 59.103 50.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 84 2.288666 GTGCGTGAGAGAGAGAGAGAT 58.711 52.381 0.00 0.00 0.00 2.75
98 140 6.204688 CACCAAGTGTGCTTAGTCATAAGAAA 59.795 38.462 0.00 0.00 40.22 2.52
104 146 8.682710 AGTGTGCTTAGTCATAAGAAAACAAAA 58.317 29.630 0.00 0.00 37.27 2.44
105 147 9.296400 GTGTGCTTAGTCATAAGAAAACAAAAA 57.704 29.630 0.00 0.00 40.86 1.94
106 148 9.296400 TGTGCTTAGTCATAAGAAAACAAAAAC 57.704 29.630 0.00 0.00 40.86 2.43
107 149 9.296400 GTGCTTAGTCATAAGAAAACAAAAACA 57.704 29.630 0.00 0.00 40.86 2.83
108 150 9.296400 TGCTTAGTCATAAGAAAACAAAAACAC 57.704 29.630 0.00 0.00 40.86 3.32
114 156 9.567848 GTCATAAGAAAACAAAAACACTGAAGA 57.432 29.630 0.00 0.00 0.00 2.87
119 161 8.466086 AGAAAACAAAAACACTGAAGAATGAC 57.534 30.769 0.00 0.00 0.00 3.06
120 162 8.306761 AGAAAACAAAAACACTGAAGAATGACT 58.693 29.630 0.00 0.00 0.00 3.41
136 178 7.835634 AGAATGACTTCCGTTTCTAGATTTC 57.164 36.000 0.00 0.00 31.27 2.17
138 180 8.750298 AGAATGACTTCCGTTTCTAGATTTCTA 58.250 33.333 0.00 0.00 31.27 2.10
139 181 9.535878 GAATGACTTCCGTTTCTAGATTTCTAT 57.464 33.333 0.00 0.00 0.00 1.98
140 182 9.892130 AATGACTTCCGTTTCTAGATTTCTATT 57.108 29.630 0.00 0.00 0.00 1.73
141 183 9.892130 ATGACTTCCGTTTCTAGATTTCTATTT 57.108 29.630 0.00 0.00 0.00 1.40
144 186 9.720769 ACTTCCGTTTCTAGATTTCTATTTTCA 57.279 29.630 0.00 0.00 0.00 2.69
147 189 9.109393 TCCGTTTCTAGATTTCTATTTTCATGG 57.891 33.333 0.00 0.00 0.00 3.66
148 190 9.109393 CCGTTTCTAGATTTCTATTTTCATGGA 57.891 33.333 0.00 0.00 0.00 3.41
170 212 7.972301 TGGAAAAATACCAATTCATTTGAGGT 58.028 30.769 0.00 0.00 37.53 3.85
172 214 8.314021 GGAAAAATACCAATTCATTTGAGGTCT 58.686 33.333 0.00 0.00 37.53 3.85
173 215 9.143631 GAAAAATACCAATTCATTTGAGGTCTG 57.856 33.333 0.00 0.00 37.53 3.51
175 217 8.421249 AAATACCAATTCATTTGAGGTCTGAA 57.579 30.769 0.00 0.00 37.53 3.02
176 218 5.712152 ACCAATTCATTTGAGGTCTGAAC 57.288 39.130 0.00 0.00 37.53 3.18
177 219 5.139727 ACCAATTCATTTGAGGTCTGAACA 58.860 37.500 0.00 0.00 37.53 3.18
179 221 6.098124 ACCAATTCATTTGAGGTCTGAACAAA 59.902 34.615 0.00 2.31 37.53 2.83
180 222 6.985645 CCAATTCATTTGAGGTCTGAACAAAA 59.014 34.615 0.00 0.00 37.53 2.44
181 223 7.495279 CCAATTCATTTGAGGTCTGAACAAAAA 59.505 33.333 0.00 0.00 37.53 1.94
182 224 9.048446 CAATTCATTTGAGGTCTGAACAAAAAT 57.952 29.630 0.00 0.00 37.53 1.82
185 227 9.748708 TTCATTTGAGGTCTGAACAAAAATAAG 57.251 29.630 0.00 0.00 37.14 1.73
186 228 9.130661 TCATTTGAGGTCTGAACAAAAATAAGA 57.869 29.630 0.00 0.00 37.14 2.10
187 229 9.748708 CATTTGAGGTCTGAACAAAAATAAGAA 57.251 29.630 0.00 0.00 37.14 2.52
189 231 6.970484 TGAGGTCTGAACAAAAATAAGAAGC 58.030 36.000 0.00 0.00 0.00 3.86
190 232 6.772716 TGAGGTCTGAACAAAAATAAGAAGCT 59.227 34.615 0.00 0.00 0.00 3.74
193 235 6.080406 GTCTGAACAAAAATAAGAAGCTCCG 58.920 40.000 0.00 0.00 0.00 4.63
194 236 5.763204 TCTGAACAAAAATAAGAAGCTCCGT 59.237 36.000 0.00 0.00 0.00 4.69
195 237 5.997385 TGAACAAAAATAAGAAGCTCCGTC 58.003 37.500 0.00 0.00 0.00 4.79
196 238 5.529430 TGAACAAAAATAAGAAGCTCCGTCA 59.471 36.000 0.00 0.00 0.00 4.35
197 239 5.358298 ACAAAAATAAGAAGCTCCGTCAC 57.642 39.130 0.00 0.00 0.00 3.67
198 240 5.063880 ACAAAAATAAGAAGCTCCGTCACT 58.936 37.500 0.00 0.00 0.00 3.41
199 241 5.531287 ACAAAAATAAGAAGCTCCGTCACTT 59.469 36.000 0.00 0.00 0.00 3.16
201 243 6.635030 AAAATAAGAAGCTCCGTCACTTTT 57.365 33.333 0.00 0.00 0.00 2.27
202 244 5.864628 AATAAGAAGCTCCGTCACTTTTC 57.135 39.130 0.00 0.00 0.00 2.29
203 245 3.477210 AAGAAGCTCCGTCACTTTTCT 57.523 42.857 0.00 0.00 0.00 2.52
204 246 4.602340 AAGAAGCTCCGTCACTTTTCTA 57.398 40.909 0.00 0.00 0.00 2.10
205 247 4.602340 AGAAGCTCCGTCACTTTTCTAA 57.398 40.909 0.00 0.00 0.00 2.10
206 248 4.957296 AGAAGCTCCGTCACTTTTCTAAA 58.043 39.130 0.00 0.00 0.00 1.85
209 251 4.957296 AGCTCCGTCACTTTTCTAAAAGA 58.043 39.130 19.33 0.00 46.39 2.52
210 252 5.552178 AGCTCCGTCACTTTTCTAAAAGAT 58.448 37.500 19.33 4.00 46.39 2.40
211 253 5.998363 AGCTCCGTCACTTTTCTAAAAGATT 59.002 36.000 19.33 0.00 46.39 2.40
213 255 7.824779 AGCTCCGTCACTTTTCTAAAAGATTAT 59.175 33.333 19.33 0.00 46.39 1.28
214 256 7.905493 GCTCCGTCACTTTTCTAAAAGATTATG 59.095 37.037 19.33 8.98 46.39 1.90
215 257 9.151471 CTCCGTCACTTTTCTAAAAGATTATGA 57.849 33.333 19.33 10.81 46.39 2.15
217 259 8.936864 CCGTCACTTTTCTAAAAGATTATGAGT 58.063 33.333 19.33 0.00 46.39 3.41
222 264 9.574516 ACTTTTCTAAAAGATTATGAGTGTGGT 57.425 29.630 19.33 0.00 46.39 4.16
246 288 3.459232 TTCATAGCTCGAGTTCCATGG 57.541 47.619 15.13 4.97 0.00 3.66
248 290 1.123077 ATAGCTCGAGTTCCATGGCA 58.877 50.000 15.13 0.00 0.00 4.92
249 291 0.175760 TAGCTCGAGTTCCATGGCAC 59.824 55.000 15.13 6.65 0.00 5.01
250 292 2.109126 GCTCGAGTTCCATGGCACC 61.109 63.158 15.13 2.16 0.00 5.01
251 293 1.450312 CTCGAGTTCCATGGCACCC 60.450 63.158 11.20 0.00 0.00 4.61
252 294 2.438434 CGAGTTCCATGGCACCCC 60.438 66.667 11.20 2.86 0.00 4.95
253 295 2.043953 GAGTTCCATGGCACCCCC 60.044 66.667 11.20 0.00 0.00 5.40
268 310 3.368323 GCACCCCCATGAACAGTAAATTG 60.368 47.826 0.00 0.00 0.00 2.32
278 320 8.981647 CCATGAACAGTAAATTGGAAGAAAAAG 58.018 33.333 0.00 0.00 0.00 2.27
316 359 3.243839 ACTTTGTGGCATTGATTGTGACC 60.244 43.478 0.00 0.00 0.00 4.02
318 361 1.887854 TGTGGCATTGATTGTGACCAG 59.112 47.619 0.00 0.00 0.00 4.00
321 364 2.756207 TGGCATTGATTGTGACCAGATG 59.244 45.455 0.00 0.00 0.00 2.90
323 366 3.181493 GGCATTGATTGTGACCAGATGTC 60.181 47.826 0.00 0.00 44.72 3.06
334 377 4.808077 GACCAGATGTCATATGTGCTTG 57.192 45.455 6.70 0.00 43.85 4.01
335 378 3.548770 ACCAGATGTCATATGTGCTTGG 58.451 45.455 6.70 8.21 0.00 3.61
336 379 3.200605 ACCAGATGTCATATGTGCTTGGA 59.799 43.478 16.88 0.00 0.00 3.53
337 380 4.201657 CCAGATGTCATATGTGCTTGGAA 58.798 43.478 6.70 0.00 0.00 3.53
374 423 0.598562 ATATCCTAGGCGCTCACACG 59.401 55.000 7.64 0.00 0.00 4.49
387 436 4.317291 GCGCTCACACGTAAAATAACAAAG 59.683 41.667 0.00 0.00 34.88 2.77
393 442 8.206325 TCACACGTAAAATAACAAAGTTGGTA 57.794 30.769 0.00 0.00 34.38 3.25
394 443 8.671921 TCACACGTAAAATAACAAAGTTGGTAA 58.328 29.630 0.00 0.00 33.45 2.85
420 469 4.614555 TTTTGTGTGCACTGTTGAGTAG 57.385 40.909 19.41 0.00 0.00 2.57
421 470 3.535280 TTGTGTGCACTGTTGAGTAGA 57.465 42.857 19.41 0.00 0.00 2.59
422 471 3.535280 TGTGTGCACTGTTGAGTAGAA 57.465 42.857 19.41 0.00 0.00 2.10
423 472 3.194861 TGTGTGCACTGTTGAGTAGAAC 58.805 45.455 19.41 3.46 0.00 3.01
490 547 4.524316 TTGGAAGCATGGAAGTCATTTG 57.476 40.909 0.00 0.00 32.92 2.32
500 557 6.432936 CATGGAAGTCATTTGGTCATAATCG 58.567 40.000 0.00 0.00 32.92 3.34
508 565 2.998316 TGGTCATAATCGATGCCACA 57.002 45.000 0.00 0.00 37.04 4.17
527 584 8.498054 TGCCACAAAATTTCAGATTGTTTTTA 57.502 26.923 0.00 0.00 35.22 1.52
528 585 9.118300 TGCCACAAAATTTCAGATTGTTTTTAT 57.882 25.926 0.00 0.00 35.22 1.40
529 586 9.384682 GCCACAAAATTTCAGATTGTTTTTATG 57.615 29.630 0.00 0.00 35.22 1.90
577 634 1.969923 GAGATACCATGGAGCTGAGCT 59.030 52.381 21.47 6.69 43.88 4.09
579 636 3.164268 AGATACCATGGAGCTGAGCTAG 58.836 50.000 21.47 0.00 39.88 3.42
584 641 3.969976 ACCATGGAGCTGAGCTAGATTAA 59.030 43.478 21.47 0.00 39.88 1.40
673 730 3.989817 GCCACATGAATGAACTTTTCCAC 59.010 43.478 0.00 0.00 0.00 4.02
717 775 8.654230 AACTCAATCTCATATGTACACATGAC 57.346 34.615 12.79 0.00 37.15 3.06
852 919 1.069596 CCTTTGTTGGGCTGGCAAC 59.930 57.895 2.88 6.57 0.00 4.17
920 989 2.939756 GCTTTTCCGCCCAAAAGAAAAA 59.060 40.909 15.70 0.00 43.41 1.94
974 1061 2.435059 GCTCGCTTCCCACTCCAC 60.435 66.667 0.00 0.00 0.00 4.02
977 1064 2.232298 CTCGCTTCCCACTCCACTCC 62.232 65.000 0.00 0.00 0.00 3.85
978 1065 2.583441 CGCTTCCCACTCCACTCCA 61.583 63.158 0.00 0.00 0.00 3.86
980 1067 1.484444 GCTTCCCACTCCACTCCACT 61.484 60.000 0.00 0.00 0.00 4.00
982 1069 0.836400 TTCCCACTCCACTCCACTCC 60.836 60.000 0.00 0.00 0.00 3.85
983 1070 1.536418 CCCACTCCACTCCACTCCA 60.536 63.158 0.00 0.00 0.00 3.86
1020 1122 3.591835 GCGCTCCTCCTCCTCTCG 61.592 72.222 0.00 0.00 0.00 4.04
1029 1137 2.784356 CCTCCTCTCGCTGCTCCTG 61.784 68.421 0.00 0.00 0.00 3.86
1094 1202 1.817209 CCTACTTCGACTGGGAGGC 59.183 63.158 0.00 0.00 0.00 4.70
1508 1619 1.588824 ATCGGCGACTGGTACGTCAA 61.589 55.000 13.76 0.00 34.98 3.18
1512 1623 0.240411 GCGACTGGTACGTCAAGTCT 59.760 55.000 17.83 0.00 33.01 3.24
1530 1641 0.612174 CTCACAAGGACCTCCGGAGA 60.612 60.000 33.39 8.60 42.08 3.71
1609 1720 1.597797 CCCCTACCGCTACAACGACA 61.598 60.000 0.00 0.00 34.06 4.35
1707 1818 3.403558 GGGGTCTCCACCAGCCTC 61.404 72.222 0.00 0.00 45.94 4.70
1725 1836 2.305009 CTCAATTTCAGGATCCAGGGC 58.695 52.381 15.82 0.00 0.00 5.19
1833 1944 0.035056 CCTTCCTGGTCACCATGGAC 60.035 60.000 21.47 6.93 33.10 4.02
1986 2118 2.158900 CCCTGATGACCAGTATGACACC 60.159 54.545 0.00 0.00 41.33 4.16
1989 2121 0.179111 ATGACCAGTATGACACCGCG 60.179 55.000 0.00 0.00 39.69 6.46
2026 2158 4.298626 AGCCAGATCCATCAGGTACTTAA 58.701 43.478 0.00 0.00 34.60 1.85
2027 2159 4.910304 AGCCAGATCCATCAGGTACTTAAT 59.090 41.667 0.00 0.00 34.60 1.40
2028 2160 5.370880 AGCCAGATCCATCAGGTACTTAATT 59.629 40.000 0.00 0.00 34.60 1.40
2029 2161 6.558775 AGCCAGATCCATCAGGTACTTAATTA 59.441 38.462 0.00 0.00 34.60 1.40
2062 2194 2.093447 TCCACGCCACATTTTTGGTTTT 60.093 40.909 0.00 0.00 39.09 2.43
2063 2195 2.286563 CCACGCCACATTTTTGGTTTTC 59.713 45.455 0.00 0.00 39.09 2.29
2064 2196 3.194062 CACGCCACATTTTTGGTTTTCT 58.806 40.909 0.00 0.00 39.09 2.52
2089 2250 9.716531 CTCTATTCATATCCTGATGCTGTAAAA 57.283 33.333 0.00 0.00 32.72 1.52
2103 2264 7.486551 TGATGCTGTAAAAGTAAAACACACAAC 59.513 33.333 0.00 0.00 0.00 3.32
2106 2267 6.804783 GCTGTAAAAGTAAAACACACAACTGT 59.195 34.615 0.00 0.00 0.00 3.55
2117 2278 5.446143 ACACACAACTGTTTTGTTTCAGA 57.554 34.783 9.46 0.00 35.84 3.27
2125 2286 4.827284 ACTGTTTTGTTTCAGATAGGTGGG 59.173 41.667 0.00 0.00 35.84 4.61
2149 2310 6.293298 GGATGTCACTGATGATGCTACATTTC 60.293 42.308 0.00 0.00 37.14 2.17
2279 2473 5.142639 CAGGGTTCATTCCATTATGGTGAT 58.857 41.667 11.39 4.29 39.03 3.06
2363 2557 3.324846 TGCGCTCTACTATCAATGGGATT 59.675 43.478 9.73 0.00 37.44 3.01
2402 2596 3.376234 CCACTCCATTGATACTTGCACAG 59.624 47.826 0.00 0.00 0.00 3.66
2637 2843 4.080863 CCTGACCTGCTCTGTTTACCTATT 60.081 45.833 0.00 0.00 0.00 1.73
2638 2844 5.491982 CTGACCTGCTCTGTTTACCTATTT 58.508 41.667 0.00 0.00 0.00 1.40
2735 2941 1.452145 ATGGTGTTGCACGGTCAACC 61.452 55.000 16.03 6.40 44.15 3.77
2887 3120 4.852697 GGGGGAAATCATAGAGGGTAAGAT 59.147 45.833 0.00 0.00 0.00 2.40
2888 3121 6.030082 GGGGGAAATCATAGAGGGTAAGATA 58.970 44.000 0.00 0.00 0.00 1.98
2889 3122 6.678857 GGGGGAAATCATAGAGGGTAAGATAT 59.321 42.308 0.00 0.00 0.00 1.63
2890 3123 7.366011 GGGGGAAATCATAGAGGGTAAGATATG 60.366 44.444 0.00 0.00 0.00 1.78
2891 3124 7.182930 GGGGAAATCATAGAGGGTAAGATATGT 59.817 40.741 0.00 0.00 0.00 2.29
2896 3129 9.784531 AATCATAGAGGGTAAGATATGTTTGTG 57.215 33.333 0.00 0.00 0.00 3.33
2897 3130 8.319057 TCATAGAGGGTAAGATATGTTTGTGT 57.681 34.615 0.00 0.00 0.00 3.72
2899 3132 9.396022 CATAGAGGGTAAGATATGTTTGTGTTT 57.604 33.333 0.00 0.00 0.00 2.83
2922 3155 6.753107 TTTTGTAAGCCTGCTAGAATAACC 57.247 37.500 0.00 0.00 0.00 2.85
2926 3159 6.423182 TGTAAGCCTGCTAGAATAACCAAAT 58.577 36.000 0.00 0.00 0.00 2.32
2927 3160 6.889722 TGTAAGCCTGCTAGAATAACCAAATT 59.110 34.615 0.00 0.00 0.00 1.82
2941 3174 9.836076 GAATAACCAAATTATTATCTTACGGCC 57.164 33.333 0.00 0.00 42.47 6.13
2942 3175 6.644248 AACCAAATTATTATCTTACGGCCC 57.356 37.500 0.00 0.00 0.00 5.80
2944 3177 5.163023 ACCAAATTATTATCTTACGGCCCCT 60.163 40.000 0.00 0.00 0.00 4.79
2945 3178 5.183140 CCAAATTATTATCTTACGGCCCCTG 59.817 44.000 0.00 0.00 0.00 4.45
2946 3179 5.836024 AATTATTATCTTACGGCCCCTGA 57.164 39.130 0.00 0.00 0.00 3.86
2947 3180 4.612264 TTATTATCTTACGGCCCCTGAC 57.388 45.455 0.00 0.00 0.00 3.51
2948 3181 2.170012 TTATCTTACGGCCCCTGACT 57.830 50.000 0.00 0.00 0.00 3.41
2949 3182 1.410004 TATCTTACGGCCCCTGACTG 58.590 55.000 0.00 0.00 0.00 3.51
2952 3185 0.108138 CTTACGGCCCCTGACTGAAG 60.108 60.000 0.00 0.00 0.00 3.02
2955 3188 0.325296 ACGGCCCCTGACTGAAGATA 60.325 55.000 0.00 0.00 0.00 1.98
2956 3189 0.830648 CGGCCCCTGACTGAAGATAA 59.169 55.000 0.00 0.00 0.00 1.75
2958 3191 1.559682 GGCCCCTGACTGAAGATAACA 59.440 52.381 0.00 0.00 0.00 2.41
2959 3192 2.420687 GGCCCCTGACTGAAGATAACAG 60.421 54.545 0.00 0.00 40.68 3.16
2961 3194 3.307762 GCCCCTGACTGAAGATAACAGTT 60.308 47.826 0.00 0.00 46.57 3.16
2962 3195 4.081087 GCCCCTGACTGAAGATAACAGTTA 60.081 45.833 0.00 0.00 46.57 2.24
2963 3196 5.396884 GCCCCTGACTGAAGATAACAGTTAT 60.397 44.000 5.43 5.43 46.57 1.89
2964 3197 6.284459 CCCCTGACTGAAGATAACAGTTATC 58.716 44.000 21.50 21.50 46.57 1.75
2967 3200 7.440556 CCCTGACTGAAGATAACAGTTATCATG 59.559 40.741 27.84 18.38 46.57 3.07
2968 3201 7.984050 CCTGACTGAAGATAACAGTTATCATGT 59.016 37.037 27.84 20.60 46.57 3.21
2972 3205 8.535335 ACTGAAGATAACAGTTATCATGTGAGT 58.465 33.333 27.84 19.93 44.69 3.41
2973 3206 8.932945 TGAAGATAACAGTTATCATGTGAGTC 57.067 34.615 27.84 15.81 43.52 3.36
2974 3207 8.753133 TGAAGATAACAGTTATCATGTGAGTCT 58.247 33.333 27.84 8.34 43.52 3.24
2977 3210 9.415008 AGATAACAGTTATCATGTGAGTCTACT 57.585 33.333 27.84 6.57 43.52 2.57
2981 3214 7.347252 ACAGTTATCATGTGAGTCTACTAGGA 58.653 38.462 0.00 0.00 0.00 2.94
2982 3215 7.283580 ACAGTTATCATGTGAGTCTACTAGGAC 59.716 40.741 0.00 0.00 36.56 3.85
2985 3218 8.995220 GTTATCATGTGAGTCTACTAGGACTAG 58.005 40.741 4.86 4.86 45.32 2.57
2988 3221 5.175388 TGTGAGTCTACTAGGACTAGCAA 57.825 43.478 6.28 0.00 45.32 3.91
2989 3222 5.567430 TGTGAGTCTACTAGGACTAGCAAA 58.433 41.667 6.28 0.00 45.32 3.68
2990 3223 5.648526 TGTGAGTCTACTAGGACTAGCAAAG 59.351 44.000 6.28 2.75 45.32 2.77
2994 3227 6.428295 AGTCTACTAGGACTAGCAAAGATGT 58.572 40.000 6.28 0.00 43.76 3.06
2996 3229 7.397761 AGTCTACTAGGACTAGCAAAGATGTTT 59.602 37.037 6.28 0.00 43.76 2.83
2997 3230 7.489757 GTCTACTAGGACTAGCAAAGATGTTTG 59.510 40.741 10.85 10.85 38.49 2.93
3009 3242 5.156355 CAAAGATGTTTGCATGTACCTGAC 58.844 41.667 1.97 0.00 36.86 3.51
3010 3243 4.292186 AGATGTTTGCATGTACCTGACT 57.708 40.909 1.92 0.00 35.07 3.41
3011 3244 4.005650 AGATGTTTGCATGTACCTGACTG 58.994 43.478 1.92 0.00 35.07 3.51
3012 3245 3.483808 TGTTTGCATGTACCTGACTGA 57.516 42.857 1.92 0.00 0.00 3.41
3015 3248 4.065088 GTTTGCATGTACCTGACTGAAGA 58.935 43.478 1.92 0.00 0.00 2.87
3018 3251 4.910195 TGCATGTACCTGACTGAAGAAAT 58.090 39.130 1.92 0.00 0.00 2.17
3019 3252 5.316167 TGCATGTACCTGACTGAAGAAATT 58.684 37.500 1.92 0.00 0.00 1.82
3020 3253 5.181811 TGCATGTACCTGACTGAAGAAATTG 59.818 40.000 1.92 0.00 0.00 2.32
3024 3257 5.758296 TGTACCTGACTGAAGAAATTGTGTC 59.242 40.000 0.00 0.00 0.00 3.67
3026 3259 5.440610 ACCTGACTGAAGAAATTGTGTCTT 58.559 37.500 0.00 0.00 38.05 3.01
3027 3260 5.297776 ACCTGACTGAAGAAATTGTGTCTTG 59.702 40.000 0.00 0.00 35.46 3.02
3028 3261 5.297776 CCTGACTGAAGAAATTGTGTCTTGT 59.702 40.000 0.00 0.00 35.46 3.16
3029 3262 6.483307 CCTGACTGAAGAAATTGTGTCTTGTA 59.517 38.462 0.00 0.00 35.46 2.41
3030 3263 7.173907 CCTGACTGAAGAAATTGTGTCTTGTAT 59.826 37.037 0.00 0.00 35.46 2.29
3031 3264 9.208022 CTGACTGAAGAAATTGTGTCTTGTATA 57.792 33.333 0.00 0.00 35.46 1.47
3033 3266 9.424319 GACTGAAGAAATTGTGTCTTGTATAGA 57.576 33.333 0.00 0.00 35.46 1.98
3034 3267 9.429359 ACTGAAGAAATTGTGTCTTGTATAGAG 57.571 33.333 0.00 0.00 35.46 2.43
3043 3276 9.672673 ATTGTGTCTTGTATAGAGTAAAATGCT 57.327 29.630 0.00 0.00 32.23 3.79
3044 3277 8.479313 TGTGTCTTGTATAGAGTAAAATGCTG 57.521 34.615 0.00 0.00 32.23 4.41
3045 3278 7.064609 TGTGTCTTGTATAGAGTAAAATGCTGC 59.935 37.037 0.00 0.00 32.23 5.25
3046 3279 7.278868 GTGTCTTGTATAGAGTAAAATGCTGCT 59.721 37.037 0.00 0.00 32.23 4.24
3047 3280 7.278646 TGTCTTGTATAGAGTAAAATGCTGCTG 59.721 37.037 0.00 0.00 32.23 4.41
3048 3281 7.492669 GTCTTGTATAGAGTAAAATGCTGCTGA 59.507 37.037 0.00 0.00 32.23 4.26
3050 3283 6.283694 TGTATAGAGTAAAATGCTGCTGAGG 58.716 40.000 0.00 0.00 0.00 3.86
3051 3284 3.710209 AGAGTAAAATGCTGCTGAGGT 57.290 42.857 0.00 0.00 0.00 3.85
3052 3285 4.826274 AGAGTAAAATGCTGCTGAGGTA 57.174 40.909 0.00 0.00 0.00 3.08
3055 3288 5.422331 AGAGTAAAATGCTGCTGAGGTACTA 59.578 40.000 0.00 0.00 41.55 1.82
3056 3289 6.098982 AGAGTAAAATGCTGCTGAGGTACTAT 59.901 38.462 0.00 0.00 41.55 2.12
3057 3290 7.287927 AGAGTAAAATGCTGCTGAGGTACTATA 59.712 37.037 0.00 0.00 41.55 1.31
3059 3292 6.927294 AAAATGCTGCTGAGGTACTATAAC 57.073 37.500 0.00 0.00 41.55 1.89
3061 3294 5.815233 ATGCTGCTGAGGTACTATAACAT 57.185 39.130 0.00 0.00 41.55 2.71
3062 3295 5.614324 TGCTGCTGAGGTACTATAACATT 57.386 39.130 0.00 0.00 41.55 2.71
3063 3296 5.989477 TGCTGCTGAGGTACTATAACATTT 58.011 37.500 0.00 0.00 41.55 2.32
3064 3297 5.817296 TGCTGCTGAGGTACTATAACATTTG 59.183 40.000 0.00 0.00 41.55 2.32
3068 3301 9.113838 CTGCTGAGGTACTATAACATTTGAAAT 57.886 33.333 0.00 0.00 41.55 2.17
3072 3305 9.537192 TGAGGTACTATAACATTTGAAATACGG 57.463 33.333 0.00 0.00 41.55 4.02
3074 3307 9.895138 AGGTACTATAACATTTGAAATACGGTT 57.105 29.630 0.00 0.00 36.02 4.44
3082 3315 7.915293 ACATTTGAAATACGGTTATGTCTGA 57.085 32.000 0.00 0.00 0.00 3.27
3083 3316 8.330466 ACATTTGAAATACGGTTATGTCTGAA 57.670 30.769 0.00 0.00 0.00 3.02
3084 3317 8.450964 ACATTTGAAATACGGTTATGTCTGAAG 58.549 33.333 0.00 0.00 0.00 3.02
3085 3318 8.664798 CATTTGAAATACGGTTATGTCTGAAGA 58.335 33.333 0.00 0.00 0.00 2.87
3087 3320 8.786826 TTGAAATACGGTTATGTCTGAAGATT 57.213 30.769 0.00 0.00 0.00 2.40
3089 3322 7.822334 TGAAATACGGTTATGTCTGAAGATTGT 59.178 33.333 0.00 0.00 0.00 2.71
3092 3325 5.547465 ACGGTTATGTCTGAAGATTGTCAA 58.453 37.500 0.00 0.00 0.00 3.18
3093 3326 5.408604 ACGGTTATGTCTGAAGATTGTCAAC 59.591 40.000 0.00 0.00 0.00 3.18
3094 3327 5.163854 CGGTTATGTCTGAAGATTGTCAACC 60.164 44.000 0.00 0.00 0.00 3.77
3095 3328 5.940470 GGTTATGTCTGAAGATTGTCAACCT 59.060 40.000 0.00 0.00 0.00 3.50
3098 3331 8.821894 GTTATGTCTGAAGATTGTCAACCTATC 58.178 37.037 0.00 0.00 0.00 2.08
3099 3332 5.734720 TGTCTGAAGATTGTCAACCTATCC 58.265 41.667 0.00 0.00 0.00 2.59
3100 3333 5.119694 GTCTGAAGATTGTCAACCTATCCC 58.880 45.833 0.00 0.00 0.00 3.85
3101 3334 4.164221 TCTGAAGATTGTCAACCTATCCCC 59.836 45.833 0.00 0.00 0.00 4.81
3102 3335 4.111577 TGAAGATTGTCAACCTATCCCCT 58.888 43.478 0.00 0.00 0.00 4.79
3103 3336 4.540099 TGAAGATTGTCAACCTATCCCCTT 59.460 41.667 0.00 0.00 0.00 3.95
3104 3337 4.510167 AGATTGTCAACCTATCCCCTTG 57.490 45.455 0.00 0.00 0.00 3.61
3105 3338 3.203040 AGATTGTCAACCTATCCCCTTGG 59.797 47.826 0.00 0.00 0.00 3.61
3106 3339 1.295020 TGTCAACCTATCCCCTTGGG 58.705 55.000 0.00 0.00 46.11 4.12
3107 3340 0.106669 GTCAACCTATCCCCTTGGGC 60.107 60.000 0.00 0.00 43.94 5.36
3108 3341 0.253630 TCAACCTATCCCCTTGGGCT 60.254 55.000 0.00 0.00 43.94 5.19
3109 3342 0.183731 CAACCTATCCCCTTGGGCTC 59.816 60.000 0.00 0.00 43.94 4.70
3110 3343 0.253630 AACCTATCCCCTTGGGCTCA 60.254 55.000 0.00 0.00 43.94 4.26
3111 3344 0.695803 ACCTATCCCCTTGGGCTCAG 60.696 60.000 0.00 0.00 43.94 3.35
3113 3346 1.414538 CCTATCCCCTTGGGCTCAGTA 60.415 57.143 0.00 0.00 43.94 2.74
3115 3348 1.216990 ATCCCCTTGGGCTCAGTAAG 58.783 55.000 0.00 0.00 43.94 2.34
3116 3349 0.178873 TCCCCTTGGGCTCAGTAAGT 60.179 55.000 0.00 0.00 43.94 2.24
3117 3350 0.698818 CCCCTTGGGCTCAGTAAGTT 59.301 55.000 0.00 0.00 35.35 2.66
3118 3351 1.075536 CCCCTTGGGCTCAGTAAGTTT 59.924 52.381 0.00 0.00 35.35 2.66
3119 3352 2.162681 CCCTTGGGCTCAGTAAGTTTG 58.837 52.381 0.00 0.00 0.00 2.93
3122 3355 4.082125 CCTTGGGCTCAGTAAGTTTGAAT 58.918 43.478 0.00 0.00 0.00 2.57
3123 3356 4.524328 CCTTGGGCTCAGTAAGTTTGAATT 59.476 41.667 0.00 0.00 0.00 2.17
3124 3357 5.011023 CCTTGGGCTCAGTAAGTTTGAATTT 59.989 40.000 0.00 0.00 0.00 1.82
3126 3359 6.084326 TGGGCTCAGTAAGTTTGAATTTTC 57.916 37.500 0.00 0.00 0.00 2.29
3128 3361 7.001674 TGGGCTCAGTAAGTTTGAATTTTCTA 58.998 34.615 0.00 0.00 0.00 2.10
3130 3363 7.015877 GGCTCAGTAAGTTTGAATTTTCTACG 58.984 38.462 0.00 0.00 0.00 3.51
3131 3364 7.015877 GCTCAGTAAGTTTGAATTTTCTACGG 58.984 38.462 0.00 0.00 0.00 4.02
3133 3366 6.483974 TCAGTAAGTTTGAATTTTCTACGGCA 59.516 34.615 0.00 0.00 0.00 5.69
3136 3369 8.665685 AGTAAGTTTGAATTTTCTACGGCATAG 58.334 33.333 0.00 0.00 0.00 2.23
3137 3370 7.681939 AAGTTTGAATTTTCTACGGCATAGA 57.318 32.000 0.00 0.00 38.20 1.98
3138 3371 7.681939 AGTTTGAATTTTCTACGGCATAGAA 57.318 32.000 0.00 0.00 46.27 2.10
3151 3384 5.298347 ACGGCATAGAAAATCCTAGTTAGC 58.702 41.667 0.00 0.00 0.00 3.09
3161 3394 9.959721 AGAAAATCCTAGTTAGCAATTTACAGA 57.040 29.630 0.00 0.00 0.00 3.41
3164 3397 8.723942 AATCCTAGTTAGCAATTTACAGAGTG 57.276 34.615 0.00 0.00 0.00 3.51
3165 3398 7.476540 TCCTAGTTAGCAATTTACAGAGTGA 57.523 36.000 0.00 0.00 0.00 3.41
3167 3400 7.981789 TCCTAGTTAGCAATTTACAGAGTGATG 59.018 37.037 0.00 0.00 0.00 3.07
3168 3401 7.981789 CCTAGTTAGCAATTTACAGAGTGATGA 59.018 37.037 0.00 0.00 0.00 2.92
3169 3402 9.371136 CTAGTTAGCAATTTACAGAGTGATGAA 57.629 33.333 0.00 0.00 0.00 2.57
3170 3403 8.034058 AGTTAGCAATTTACAGAGTGATGAAC 57.966 34.615 0.00 0.00 0.00 3.18
3171 3404 7.880195 AGTTAGCAATTTACAGAGTGATGAACT 59.120 33.333 0.00 0.00 43.85 3.01
3172 3405 6.492007 AGCAATTTACAGAGTGATGAACTG 57.508 37.500 0.00 0.00 40.07 3.16
3173 3406 5.091431 GCAATTTACAGAGTGATGAACTGC 58.909 41.667 0.00 0.00 40.07 4.40
3175 3408 6.671190 CAATTTACAGAGTGATGAACTGCAA 58.329 36.000 0.00 0.00 40.07 4.08
3176 3409 5.929697 TTTACAGAGTGATGAACTGCAAG 57.070 39.130 0.00 0.00 40.07 4.01
3177 3410 2.149578 ACAGAGTGATGAACTGCAAGC 58.850 47.619 0.00 0.00 40.07 4.01
3179 3412 2.095869 CAGAGTGATGAACTGCAAGCAC 60.096 50.000 0.00 0.00 40.07 4.40
3181 3414 1.878088 AGTGATGAACTGCAAGCACTG 59.122 47.619 6.24 0.00 41.60 3.66
3182 3415 1.875514 GTGATGAACTGCAAGCACTGA 59.124 47.619 0.00 0.00 37.60 3.41
3183 3416 1.875514 TGATGAACTGCAAGCACTGAC 59.124 47.619 0.00 0.00 37.60 3.51
3187 3420 1.942657 GAACTGCAAGCACTGACAGAA 59.057 47.619 10.08 0.00 37.60 3.02
3190 3423 1.945394 CTGCAAGCACTGACAGAAAGT 59.055 47.619 10.08 0.00 33.51 2.66
3192 3425 3.743521 TGCAAGCACTGACAGAAAGTAT 58.256 40.909 10.08 0.00 0.00 2.12
3193 3426 3.748048 TGCAAGCACTGACAGAAAGTATC 59.252 43.478 10.08 0.00 0.00 2.24
3208 3441 7.317842 AGAAAGTATCTGCATTGTGATTGAG 57.682 36.000 0.00 0.00 36.88 3.02
3209 3442 7.108194 AGAAAGTATCTGCATTGTGATTGAGA 58.892 34.615 0.00 0.00 36.88 3.27
3210 3443 7.609146 AGAAAGTATCTGCATTGTGATTGAGAA 59.391 33.333 0.00 0.00 36.88 2.87
3211 3444 7.692460 AAGTATCTGCATTGTGATTGAGAAA 57.308 32.000 0.00 0.00 0.00 2.52
3213 3446 7.533426 AGTATCTGCATTGTGATTGAGAAAAC 58.467 34.615 0.00 0.00 0.00 2.43
3214 3447 5.125100 TCTGCATTGTGATTGAGAAAACC 57.875 39.130 0.00 0.00 0.00 3.27
3215 3448 4.828939 TCTGCATTGTGATTGAGAAAACCT 59.171 37.500 0.00 0.00 0.00 3.50
3216 3449 6.003326 TCTGCATTGTGATTGAGAAAACCTA 58.997 36.000 0.00 0.00 0.00 3.08
3217 3450 6.660521 TCTGCATTGTGATTGAGAAAACCTAT 59.339 34.615 0.00 0.00 0.00 2.57
3219 3452 6.433716 TGCATTGTGATTGAGAAAACCTATCA 59.566 34.615 0.00 0.00 0.00 2.15
3221 3454 7.274250 GCATTGTGATTGAGAAAACCTATCAAC 59.726 37.037 0.00 0.00 35.89 3.18
3222 3455 6.480524 TGTGATTGAGAAAACCTATCAACG 57.519 37.500 0.00 0.00 35.89 4.10
3225 3458 5.874810 TGATTGAGAAAACCTATCAACGAGG 59.125 40.000 0.00 0.00 35.89 4.63
3229 3462 4.833390 AGAAAACCTATCAACGAGGAAGG 58.167 43.478 0.00 0.00 37.53 3.46
3232 3465 4.903045 AACCTATCAACGAGGAAGGAAA 57.097 40.909 0.00 0.00 37.53 3.13
3236 3469 6.246163 ACCTATCAACGAGGAAGGAAATTTT 58.754 36.000 0.00 0.00 37.53 1.82
3237 3470 6.151144 ACCTATCAACGAGGAAGGAAATTTTG 59.849 38.462 0.00 0.00 37.53 2.44
3238 3471 6.374333 CCTATCAACGAGGAAGGAAATTTTGA 59.626 38.462 0.00 0.00 35.99 2.69
3242 3475 4.470602 ACGAGGAAGGAAATTTTGAACCT 58.529 39.130 0.00 0.07 0.00 3.50
3244 3477 6.066032 ACGAGGAAGGAAATTTTGAACCTTA 58.934 36.000 8.47 0.00 41.90 2.69
3247 3480 6.382087 AGGAAGGAAATTTTGAACCTTACCT 58.618 36.000 12.77 13.90 42.46 3.08
3248 3481 6.844388 AGGAAGGAAATTTTGAACCTTACCTT 59.156 34.615 12.77 7.97 42.46 3.50
3267 3539 5.487433 ACCTTAAATTAGTTTTGCATGGGC 58.513 37.500 0.00 0.00 41.68 5.36
3737 4026 4.543590 AGACGAAGACATTGAATGGACT 57.456 40.909 10.27 5.80 33.60 3.85
3911 4202 7.836183 AGTACATGGAGCAGGAGAAAATTAATT 59.164 33.333 0.00 0.00 0.00 1.40
3979 4277 1.067199 GCTTCAAATTCGCCGCAGTG 61.067 55.000 0.00 0.00 0.00 3.66
3983 4281 0.519519 CAAATTCGCCGCAGTGGTTA 59.480 50.000 0.89 0.00 41.21 2.85
4035 4338 2.510411 CACGGGCAGGCATATGGA 59.490 61.111 4.56 0.00 0.00 3.41
4095 4398 6.151985 AGTTGTAATGTGTTTGAAGTTGGACA 59.848 34.615 0.00 0.00 0.00 4.02
4220 4527 5.104569 TGCCAATCTGTGATCTACCAACATA 60.105 40.000 0.00 0.00 0.00 2.29
4226 4533 7.290110 TCTGTGATCTACCAACATATCGAAT 57.710 36.000 0.00 0.00 0.00 3.34
4253 4560 0.327924 AATGCACCAATCGGGAGACA 59.672 50.000 0.00 0.00 44.82 3.41
4260 4567 4.213482 GCACCAATCGGGAGACATTTATAC 59.787 45.833 0.00 0.00 44.82 1.47
4292 4599 4.189231 ACCTTTGTATACAAGATCGGCAC 58.811 43.478 17.36 0.00 37.15 5.01
4304 4611 5.824624 ACAAGATCGGCACAATCTCATTATT 59.175 36.000 0.00 0.00 0.00 1.40
4308 4615 4.512484 TCGGCACAATCTCATTATTGACA 58.488 39.130 3.73 0.00 38.84 3.58
4336 4643 3.258123 TGATCTTTGGGCCTACAAAAAGC 59.742 43.478 4.53 0.00 39.60 3.51
4350 4657 3.381908 ACAAAAAGCATTACCCGTTGTGA 59.618 39.130 0.00 0.00 0.00 3.58
4351 4658 3.915437 AAAAGCATTACCCGTTGTGAG 57.085 42.857 0.00 0.00 0.00 3.51
4352 4659 2.851263 AAGCATTACCCGTTGTGAGA 57.149 45.000 0.00 0.00 0.00 3.27
4353 4660 2.851263 AGCATTACCCGTTGTGAGAA 57.149 45.000 0.00 0.00 0.00 2.87
4354 4661 2.423577 AGCATTACCCGTTGTGAGAAC 58.576 47.619 0.00 0.00 0.00 3.01
4355 4662 2.038557 AGCATTACCCGTTGTGAGAACT 59.961 45.455 0.00 0.00 0.00 3.01
4356 4663 2.812011 GCATTACCCGTTGTGAGAACTT 59.188 45.455 0.00 0.00 0.00 2.66
4357 4664 3.998341 GCATTACCCGTTGTGAGAACTTA 59.002 43.478 0.00 0.00 0.00 2.24
4358 4665 4.634443 GCATTACCCGTTGTGAGAACTTAT 59.366 41.667 0.00 0.00 0.00 1.73
4359 4666 5.813672 GCATTACCCGTTGTGAGAACTTATA 59.186 40.000 0.00 0.00 0.00 0.98
4360 4667 6.018994 GCATTACCCGTTGTGAGAACTTATAG 60.019 42.308 0.00 0.00 0.00 1.31
4361 4668 6.594788 TTACCCGTTGTGAGAACTTATAGT 57.405 37.500 0.00 0.00 0.00 2.12
4362 4669 5.479124 ACCCGTTGTGAGAACTTATAGTT 57.521 39.130 0.00 0.00 41.95 2.24
4431 4738 7.658179 TTATGTTGCTCTAAGTTGAGTTCTG 57.342 36.000 0.00 0.00 36.51 3.02
4456 4763 6.294397 GGATGATGGAAAATGGAGTTGCTATC 60.294 42.308 0.00 0.00 0.00 2.08
4464 4772 6.610741 AAATGGAGTTGCTATCTTTCGATC 57.389 37.500 0.00 0.00 0.00 3.69
4468 4776 4.025313 GGAGTTGCTATCTTTCGATCTTGC 60.025 45.833 0.00 0.00 0.00 4.01
4640 4951 5.628797 TGGATGATCTGGCATACTGTAAA 57.371 39.130 0.00 0.00 30.19 2.01
4679 4990 3.998913 TGGTGGATCTGCTACATGAAA 57.001 42.857 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 84 8.774890 TTGGTGATTTTTATTACACTACGCTA 57.225 30.769 0.00 0.00 34.28 4.26
122 164 9.109393 TCCATGAAAATAGAAATCTAGAAACGG 57.891 33.333 0.00 0.00 0.00 4.44
143 185 8.885722 CCTCAAATGAATTGGTATTTTTCCATG 58.114 33.333 0.00 0.00 39.62 3.66
144 186 8.605065 ACCTCAAATGAATTGGTATTTTTCCAT 58.395 29.630 0.00 0.00 39.62 3.41
145 187 7.972301 ACCTCAAATGAATTGGTATTTTTCCA 58.028 30.769 0.00 0.00 39.62 3.53
146 188 8.314021 AGACCTCAAATGAATTGGTATTTTTCC 58.686 33.333 0.00 0.00 39.62 3.13
147 189 9.143631 CAGACCTCAAATGAATTGGTATTTTTC 57.856 33.333 0.00 0.00 39.62 2.29
148 190 8.869109 TCAGACCTCAAATGAATTGGTATTTTT 58.131 29.630 0.00 0.00 39.62 1.94
149 191 8.421249 TCAGACCTCAAATGAATTGGTATTTT 57.579 30.769 0.00 0.00 39.62 1.82
150 192 8.306761 GTTCAGACCTCAAATGAATTGGTATTT 58.693 33.333 0.00 0.00 39.62 1.40
151 193 7.451255 TGTTCAGACCTCAAATGAATTGGTATT 59.549 33.333 0.00 0.00 39.62 1.89
153 195 6.303054 TGTTCAGACCTCAAATGAATTGGTA 58.697 36.000 0.00 0.00 39.62 3.25
154 196 5.139727 TGTTCAGACCTCAAATGAATTGGT 58.860 37.500 0.00 0.00 39.62 3.67
155 197 5.710513 TGTTCAGACCTCAAATGAATTGG 57.289 39.130 0.00 0.00 39.62 3.16
156 198 8.422973 TTTTTGTTCAGACCTCAAATGAATTG 57.577 30.769 0.00 0.00 40.58 2.32
159 201 9.748708 CTTATTTTTGTTCAGACCTCAAATGAA 57.251 29.630 0.00 0.00 32.41 2.57
162 204 9.971922 CTTCTTATTTTTGTTCAGACCTCAAAT 57.028 29.630 0.00 0.00 32.41 2.32
163 205 7.920682 GCTTCTTATTTTTGTTCAGACCTCAAA 59.079 33.333 0.00 0.00 0.00 2.69
165 207 6.772716 AGCTTCTTATTTTTGTTCAGACCTCA 59.227 34.615 0.00 0.00 0.00 3.86
166 208 7.208225 AGCTTCTTATTTTTGTTCAGACCTC 57.792 36.000 0.00 0.00 0.00 3.85
167 209 6.207614 GGAGCTTCTTATTTTTGTTCAGACCT 59.792 38.462 0.00 0.00 0.00 3.85
170 212 5.763204 ACGGAGCTTCTTATTTTTGTTCAGA 59.237 36.000 0.00 0.00 0.00 3.27
172 214 5.529430 TGACGGAGCTTCTTATTTTTGTTCA 59.471 36.000 0.00 0.00 0.00 3.18
173 215 5.851703 GTGACGGAGCTTCTTATTTTTGTTC 59.148 40.000 0.00 0.00 0.00 3.18
175 217 5.063880 AGTGACGGAGCTTCTTATTTTTGT 58.936 37.500 0.00 0.00 0.00 2.83
176 218 5.613358 AGTGACGGAGCTTCTTATTTTTG 57.387 39.130 0.00 0.00 0.00 2.44
177 219 6.635030 AAAGTGACGGAGCTTCTTATTTTT 57.365 33.333 0.00 0.00 0.00 1.94
179 221 5.998363 AGAAAAGTGACGGAGCTTCTTATTT 59.002 36.000 0.00 0.00 0.00 1.40
180 222 5.552178 AGAAAAGTGACGGAGCTTCTTATT 58.448 37.500 0.00 0.00 0.00 1.40
181 223 5.153950 AGAAAAGTGACGGAGCTTCTTAT 57.846 39.130 0.00 0.00 0.00 1.73
182 224 4.602340 AGAAAAGTGACGGAGCTTCTTA 57.398 40.909 0.00 0.00 0.00 2.10
183 225 3.477210 AGAAAAGTGACGGAGCTTCTT 57.523 42.857 0.00 0.00 0.00 2.52
185 227 5.465724 TCTTTTAGAAAAGTGACGGAGCTTC 59.534 40.000 13.10 0.00 44.37 3.86
186 228 5.365619 TCTTTTAGAAAAGTGACGGAGCTT 58.634 37.500 13.10 0.00 44.37 3.74
187 229 4.957296 TCTTTTAGAAAAGTGACGGAGCT 58.043 39.130 13.10 0.00 44.37 4.09
189 231 9.151471 TCATAATCTTTTAGAAAAGTGACGGAG 57.849 33.333 13.10 2.13 44.37 4.63
190 232 9.151471 CTCATAATCTTTTAGAAAAGTGACGGA 57.849 33.333 13.10 7.44 44.37 4.69
195 237 9.831737 CCACACTCATAATCTTTTAGAAAAGTG 57.168 33.333 13.10 6.26 44.37 3.16
196 238 9.574516 ACCACACTCATAATCTTTTAGAAAAGT 57.425 29.630 13.10 0.18 44.37 2.66
223 265 4.635765 CCATGGAACTCGAGCTATGAAAAA 59.364 41.667 13.61 0.00 0.00 1.94
224 266 4.191544 CCATGGAACTCGAGCTATGAAAA 58.808 43.478 13.61 0.00 0.00 2.29
227 269 1.069204 GCCATGGAACTCGAGCTATGA 59.931 52.381 18.40 0.00 0.00 2.15
228 270 1.202568 TGCCATGGAACTCGAGCTATG 60.203 52.381 18.40 10.59 0.00 2.23
229 271 1.123077 TGCCATGGAACTCGAGCTAT 58.877 50.000 18.40 0.00 0.00 2.97
230 272 0.175760 GTGCCATGGAACTCGAGCTA 59.824 55.000 18.40 0.00 0.00 3.32
231 273 1.078848 GTGCCATGGAACTCGAGCT 60.079 57.895 18.40 0.00 0.00 4.09
233 275 1.450312 GGGTGCCATGGAACTCGAG 60.450 63.158 22.74 11.84 0.00 4.04
234 276 2.668632 GGGTGCCATGGAACTCGA 59.331 61.111 22.74 0.00 0.00 4.04
235 277 2.438434 GGGGTGCCATGGAACTCG 60.438 66.667 22.74 0.00 0.00 4.18
236 278 2.043953 GGGGGTGCCATGGAACTC 60.044 66.667 22.74 19.34 0.00 3.01
237 279 2.248374 ATGGGGGTGCCATGGAACT 61.248 57.895 22.74 0.00 0.00 3.01
239 281 1.808854 TTCATGGGGGTGCCATGGAA 61.809 55.000 18.40 0.00 43.49 3.53
241 283 2.059786 GTTCATGGGGGTGCCATGG 61.060 63.158 7.63 7.63 43.49 3.66
242 284 1.305129 TGTTCATGGGGGTGCCATG 60.305 57.895 0.00 0.00 44.34 3.66
243 285 1.000739 CTGTTCATGGGGGTGCCAT 59.999 57.895 0.00 0.00 0.00 4.40
244 286 1.136961 TACTGTTCATGGGGGTGCCA 61.137 55.000 0.00 0.00 0.00 4.92
246 288 1.917872 TTTACTGTTCATGGGGGTGC 58.082 50.000 0.00 0.00 0.00 5.01
248 290 3.076785 TCCAATTTACTGTTCATGGGGGT 59.923 43.478 0.00 0.00 0.00 4.95
249 291 3.707316 TCCAATTTACTGTTCATGGGGG 58.293 45.455 0.00 0.00 0.00 5.40
250 292 5.016173 TCTTCCAATTTACTGTTCATGGGG 58.984 41.667 0.00 0.00 0.00 4.96
251 293 6.588719 TTCTTCCAATTTACTGTTCATGGG 57.411 37.500 0.00 0.00 0.00 4.00
252 294 8.885494 TTTTTCTTCCAATTTACTGTTCATGG 57.115 30.769 0.00 0.00 0.00 3.66
253 295 9.533253 ACTTTTTCTTCCAATTTACTGTTCATG 57.467 29.630 0.00 0.00 0.00 3.07
268 310 9.955208 TTTCGGATTTTTACTACTTTTTCTTCC 57.045 29.630 0.00 0.00 0.00 3.46
278 320 6.361481 GCCACAAAGTTTCGGATTTTTACTAC 59.639 38.462 4.99 0.00 0.00 2.73
290 333 4.050553 ACAATCAATGCCACAAAGTTTCG 58.949 39.130 0.00 0.00 0.00 3.46
316 359 5.823209 TTTCCAAGCACATATGACATCTG 57.177 39.130 10.38 0.00 0.00 2.90
318 361 8.385111 CAAAAATTTCCAAGCACATATGACATC 58.615 33.333 10.38 0.00 0.00 3.06
321 364 7.360269 CCACAAAAATTTCCAAGCACATATGAC 60.360 37.037 10.38 0.79 0.00 3.06
323 366 6.649973 TCCACAAAAATTTCCAAGCACATATG 59.350 34.615 0.00 0.00 0.00 1.78
324 367 6.650390 GTCCACAAAAATTTCCAAGCACATAT 59.350 34.615 0.00 0.00 0.00 1.78
325 368 5.988561 GTCCACAAAAATTTCCAAGCACATA 59.011 36.000 0.00 0.00 0.00 2.29
326 369 4.815846 GTCCACAAAAATTTCCAAGCACAT 59.184 37.500 0.00 0.00 0.00 3.21
327 370 4.187694 GTCCACAAAAATTTCCAAGCACA 58.812 39.130 0.00 0.00 0.00 4.57
328 371 4.187694 TGTCCACAAAAATTTCCAAGCAC 58.812 39.130 0.00 0.00 0.00 4.40
330 373 5.809719 TTTGTCCACAAAAATTTCCAAGC 57.190 34.783 2.29 0.00 42.26 4.01
359 408 0.108992 TTTACGTGTGAGCGCCTAGG 60.109 55.000 2.29 3.67 34.88 3.02
387 436 5.752955 AGTGCACACAAAATTGATTACCAAC 59.247 36.000 21.04 0.00 37.63 3.77
393 442 5.417811 TCAACAGTGCACACAAAATTGATT 58.582 33.333 21.04 1.49 0.00 2.57
394 443 5.008619 TCAACAGTGCACACAAAATTGAT 57.991 34.783 21.04 0.00 0.00 2.57
399 448 4.257731 TCTACTCAACAGTGCACACAAAA 58.742 39.130 21.04 0.08 33.62 2.44
445 502 1.594293 GGTGCCCATATGACGTCCG 60.594 63.158 14.12 0.00 0.00 4.79
480 537 6.138761 GCATCGATTATGACCAAATGACTTC 58.861 40.000 0.00 0.00 37.86 3.01
490 547 4.630894 TTTTGTGGCATCGATTATGACC 57.369 40.909 0.00 0.00 43.79 4.02
500 557 6.790285 AACAATCTGAAATTTTGTGGCATC 57.210 33.333 0.00 0.00 34.04 3.91
560 617 3.251016 TCTAGCTCAGCTCCATGGTAT 57.749 47.619 12.58 0.00 40.44 2.73
564 621 6.932356 TTTTTAATCTAGCTCAGCTCCATG 57.068 37.500 0.00 0.00 40.44 3.66
651 708 3.989817 GTGGAAAAGTTCATTCATGTGGC 59.010 43.478 0.00 0.00 0.00 5.01
820 883 4.479619 CAACAAAGGACTTTATGCTCTGC 58.520 43.478 0.00 0.00 0.00 4.26
865 932 2.116556 GCTTTCCCCCGGAAACCA 59.883 61.111 0.73 0.00 45.42 3.67
928 997 2.362503 GGGAAAGGGGGCGGAAAG 60.363 66.667 0.00 0.00 0.00 2.62
974 1061 1.896694 GGCTCAGAGTGGAGTGGAG 59.103 63.158 0.00 0.00 37.24 3.86
977 1064 2.575993 CCGGCTCAGAGTGGAGTG 59.424 66.667 5.17 0.00 37.24 3.51
978 1065 3.386237 GCCGGCTCAGAGTGGAGT 61.386 66.667 22.15 0.00 37.24 3.85
980 1067 3.385384 CTGCCGGCTCAGAGTGGA 61.385 66.667 29.70 1.91 36.19 4.02
982 1069 3.889134 TTGCTGCCGGCTCAGAGTG 62.889 63.158 29.70 9.67 42.39 3.51
983 1070 2.964310 ATTGCTGCCGGCTCAGAGT 61.964 57.895 29.70 12.01 42.39 3.24
1094 1202 3.834799 GGGCCGACTGGTACGAGG 61.835 72.222 9.86 0.00 37.67 4.63
1252 1360 2.045926 GGTCTTGCGGTGCTGGAT 60.046 61.111 0.00 0.00 0.00 3.41
1356 1464 1.199615 GGGAGTAGAAGAAGCTGCCT 58.800 55.000 0.00 0.00 37.68 4.75
1508 1619 2.659800 CGGAGGTCCTTGTGAGACT 58.340 57.895 0.00 0.00 34.56 3.24
1630 1741 1.067060 CACATTGATCCGCTCGTAGGA 59.933 52.381 0.00 0.00 42.69 2.94
1656 1767 2.066999 CAGCCTGTAGGTCCTCCCC 61.067 68.421 0.00 0.00 37.57 4.81
1707 1818 1.342275 TGGCCCTGGATCCTGAAATTG 60.342 52.381 19.59 2.83 0.00 2.32
1833 1944 4.680237 TCGGTGCTGGCGTTCTGG 62.680 66.667 0.00 0.00 0.00 3.86
1986 2118 1.202031 GCTTGGTTTATGGAGAACGCG 60.202 52.381 3.53 3.53 0.00 6.01
1989 2121 3.686016 TCTGGCTTGGTTTATGGAGAAC 58.314 45.455 0.00 0.00 0.00 3.01
2026 2158 3.467803 GCGTGGAGGAAGCAGTAATAAT 58.532 45.455 0.00 0.00 0.00 1.28
2027 2159 2.419574 GGCGTGGAGGAAGCAGTAATAA 60.420 50.000 0.00 0.00 0.00 1.40
2028 2160 1.138266 GGCGTGGAGGAAGCAGTAATA 59.862 52.381 0.00 0.00 0.00 0.98
2029 2161 0.107654 GGCGTGGAGGAAGCAGTAAT 60.108 55.000 0.00 0.00 0.00 1.89
2062 2194 8.655935 TTACAGCATCAGGATATGAATAGAGA 57.344 34.615 0.00 0.00 42.53 3.10
2063 2195 9.716531 TTTTACAGCATCAGGATATGAATAGAG 57.283 33.333 0.00 0.00 42.53 2.43
2064 2196 9.716531 CTTTTACAGCATCAGGATATGAATAGA 57.283 33.333 0.00 0.00 42.53 1.98
2103 2264 5.070001 TCCCACCTATCTGAAACAAAACAG 58.930 41.667 0.00 0.00 35.72 3.16
2106 2267 5.640147 ACATCCCACCTATCTGAAACAAAA 58.360 37.500 0.00 0.00 0.00 2.44
2117 2278 3.657610 TCATCAGTGACATCCCACCTAT 58.342 45.455 0.00 0.00 37.76 2.57
2125 2286 6.563567 CGAAATGTAGCATCATCAGTGACATC 60.564 42.308 0.00 0.00 37.14 3.06
2149 2310 4.429108 ACATTCCAAACAAACAGAAACCG 58.571 39.130 0.00 0.00 0.00 4.44
2206 2400 7.522399 CGGTAACATTCCACCTGAAACAATTAA 60.522 37.037 0.00 0.00 36.33 1.40
2207 2401 6.072397 CGGTAACATTCCACCTGAAACAATTA 60.072 38.462 0.00 0.00 36.33 1.40
2208 2402 5.278758 CGGTAACATTCCACCTGAAACAATT 60.279 40.000 0.00 0.00 36.33 2.32
2209 2403 4.217550 CGGTAACATTCCACCTGAAACAAT 59.782 41.667 0.00 0.00 36.33 2.71
2279 2473 3.947196 AGTACACATCGGTCACGGTAATA 59.053 43.478 0.00 0.00 41.39 0.98
2363 2557 4.565652 GGAGTGGAAGGAGCAATGTAAGAA 60.566 45.833 0.00 0.00 0.00 2.52
2402 2596 1.141053 ACTCCCGGGACATTGAATAGC 59.859 52.381 22.63 0.00 0.00 2.97
2637 2843 5.425539 TGAAATAAGAACCACCACCCAAAAA 59.574 36.000 0.00 0.00 0.00 1.94
2638 2844 4.962995 TGAAATAAGAACCACCACCCAAAA 59.037 37.500 0.00 0.00 0.00 2.44
2641 2847 3.499563 CCTGAAATAAGAACCACCACCCA 60.500 47.826 0.00 0.00 0.00 4.51
2643 2849 4.028993 TCCTGAAATAAGAACCACCACC 57.971 45.455 0.00 0.00 0.00 4.61
2735 2941 3.446161 ACATGAATTTCAGCACCTGGATG 59.554 43.478 0.00 0.00 31.51 3.51
2899 3132 6.242396 TGGTTATTCTAGCAGGCTTACAAAA 58.758 36.000 0.00 0.00 0.00 2.44
2903 3136 6.944234 ATTTGGTTATTCTAGCAGGCTTAC 57.056 37.500 0.00 0.00 0.00 2.34
2906 3139 9.813826 ATAATAATTTGGTTATTCTAGCAGGCT 57.186 29.630 0.00 0.00 41.08 4.58
2915 3148 9.836076 GGCCGTAAGATAATAATTTGGTTATTC 57.164 33.333 0.00 0.00 40.72 1.75
2916 3149 8.799367 GGGCCGTAAGATAATAATTTGGTTATT 58.201 33.333 0.00 0.00 42.09 1.40
2918 3151 6.716173 GGGGCCGTAAGATAATAATTTGGTTA 59.284 38.462 0.00 0.00 43.02 2.85
2921 3154 5.183140 CAGGGGCCGTAAGATAATAATTTGG 59.817 44.000 0.00 0.00 43.02 3.28
2922 3155 6.001460 TCAGGGGCCGTAAGATAATAATTTG 58.999 40.000 0.00 0.00 43.02 2.32
2926 3159 4.039973 CAGTCAGGGGCCGTAAGATAATAA 59.960 45.833 0.00 0.00 43.02 1.40
2927 3160 3.576982 CAGTCAGGGGCCGTAAGATAATA 59.423 47.826 0.00 0.00 43.02 0.98
2933 3166 0.108138 CTTCAGTCAGGGGCCGTAAG 60.108 60.000 0.00 0.00 0.00 2.34
2934 3167 0.543410 TCTTCAGTCAGGGGCCGTAA 60.543 55.000 0.00 0.00 0.00 3.18
2936 3169 0.325296 TATCTTCAGTCAGGGGCCGT 60.325 55.000 0.00 0.00 0.00 5.68
2937 3170 0.830648 TTATCTTCAGTCAGGGGCCG 59.169 55.000 0.00 0.00 0.00 6.13
2938 3171 1.559682 TGTTATCTTCAGTCAGGGGCC 59.440 52.381 0.00 0.00 0.00 5.80
2939 3172 2.237392 ACTGTTATCTTCAGTCAGGGGC 59.763 50.000 0.00 0.00 41.52 5.80
2941 3174 6.878317 TGATAACTGTTATCTTCAGTCAGGG 58.122 40.000 30.18 0.00 44.03 4.45
2942 3175 7.984050 ACATGATAACTGTTATCTTCAGTCAGG 59.016 37.037 30.18 19.11 44.03 3.86
2944 3177 8.531146 TCACATGATAACTGTTATCTTCAGTCA 58.469 33.333 30.18 17.07 44.03 3.41
2945 3178 8.932945 TCACATGATAACTGTTATCTTCAGTC 57.067 34.615 30.18 12.92 44.03 3.51
2946 3179 8.535335 ACTCACATGATAACTGTTATCTTCAGT 58.465 33.333 30.18 22.58 46.30 3.41
2947 3180 8.939201 ACTCACATGATAACTGTTATCTTCAG 57.061 34.615 30.18 22.15 41.99 3.02
2948 3181 8.753133 AGACTCACATGATAACTGTTATCTTCA 58.247 33.333 30.18 18.79 41.99 3.02
2955 3188 7.834681 TCCTAGTAGACTCACATGATAACTGTT 59.165 37.037 0.00 0.00 0.00 3.16
2956 3189 7.283580 GTCCTAGTAGACTCACATGATAACTGT 59.716 40.741 0.00 0.00 33.79 3.55
2958 3191 7.579105 AGTCCTAGTAGACTCACATGATAACT 58.421 38.462 0.00 0.00 43.76 2.24
2959 3192 7.811117 AGTCCTAGTAGACTCACATGATAAC 57.189 40.000 0.00 0.00 43.76 1.89
2960 3193 7.662258 GCTAGTCCTAGTAGACTCACATGATAA 59.338 40.741 0.00 0.00 43.76 1.75
2961 3194 7.162761 GCTAGTCCTAGTAGACTCACATGATA 58.837 42.308 0.00 0.00 43.76 2.15
2962 3195 6.001460 GCTAGTCCTAGTAGACTCACATGAT 58.999 44.000 0.00 0.00 43.76 2.45
2963 3196 5.104485 TGCTAGTCCTAGTAGACTCACATGA 60.104 44.000 0.00 0.00 43.76 3.07
2964 3197 5.126779 TGCTAGTCCTAGTAGACTCACATG 58.873 45.833 5.07 0.00 43.76 3.21
2967 3200 5.881443 TCTTTGCTAGTCCTAGTAGACTCAC 59.119 44.000 5.07 1.14 43.76 3.51
2968 3201 6.063496 TCTTTGCTAGTCCTAGTAGACTCA 57.937 41.667 5.07 0.00 43.76 3.41
2972 3205 7.548097 CAAACATCTTTGCTAGTCCTAGTAGA 58.452 38.462 0.00 4.87 35.65 2.59
2973 3206 7.763172 CAAACATCTTTGCTAGTCCTAGTAG 57.237 40.000 3.45 0.00 35.65 2.57
2988 3221 4.456911 CAGTCAGGTACATGCAAACATCTT 59.543 41.667 1.79 0.00 32.87 2.40
2989 3222 4.005650 CAGTCAGGTACATGCAAACATCT 58.994 43.478 1.79 0.00 32.87 2.90
2990 3223 4.002982 TCAGTCAGGTACATGCAAACATC 58.997 43.478 1.79 0.00 32.87 3.06
2994 3227 4.350368 TCTTCAGTCAGGTACATGCAAA 57.650 40.909 1.79 0.00 0.00 3.68
2996 3229 4.350368 TTTCTTCAGTCAGGTACATGCA 57.650 40.909 1.79 0.00 0.00 3.96
2997 3230 5.182001 ACAATTTCTTCAGTCAGGTACATGC 59.818 40.000 1.79 0.00 0.00 4.06
2998 3231 6.205464 ACACAATTTCTTCAGTCAGGTACATG 59.795 38.462 0.00 0.00 0.00 3.21
3000 3233 5.680619 ACACAATTTCTTCAGTCAGGTACA 58.319 37.500 0.00 0.00 0.00 2.90
3001 3234 5.992217 AGACACAATTTCTTCAGTCAGGTAC 59.008 40.000 0.00 0.00 0.00 3.34
3002 3235 6.174720 AGACACAATTTCTTCAGTCAGGTA 57.825 37.500 0.00 0.00 0.00 3.08
3003 3236 5.041191 AGACACAATTTCTTCAGTCAGGT 57.959 39.130 0.00 0.00 0.00 4.00
3004 3237 5.297776 ACAAGACACAATTTCTTCAGTCAGG 59.702 40.000 0.00 0.00 30.56 3.86
3007 3240 9.424319 TCTATACAAGACACAATTTCTTCAGTC 57.576 33.333 0.00 0.00 30.56 3.51
3009 3242 9.429359 ACTCTATACAAGACACAATTTCTTCAG 57.571 33.333 0.00 0.00 30.56 3.02
3018 3251 8.935844 CAGCATTTTACTCTATACAAGACACAA 58.064 33.333 0.00 0.00 0.00 3.33
3019 3252 7.064609 GCAGCATTTTACTCTATACAAGACACA 59.935 37.037 0.00 0.00 0.00 3.72
3020 3253 7.278868 AGCAGCATTTTACTCTATACAAGACAC 59.721 37.037 0.00 0.00 0.00 3.67
3024 3257 7.042187 CCTCAGCAGCATTTTACTCTATACAAG 60.042 40.741 0.00 0.00 0.00 3.16
3026 3259 6.127054 ACCTCAGCAGCATTTTACTCTATACA 60.127 38.462 0.00 0.00 0.00 2.29
3027 3260 6.284459 ACCTCAGCAGCATTTTACTCTATAC 58.716 40.000 0.00 0.00 0.00 1.47
3028 3261 6.485830 ACCTCAGCAGCATTTTACTCTATA 57.514 37.500 0.00 0.00 0.00 1.31
3029 3262 5.365021 ACCTCAGCAGCATTTTACTCTAT 57.635 39.130 0.00 0.00 0.00 1.98
3030 3263 4.826274 ACCTCAGCAGCATTTTACTCTA 57.174 40.909 0.00 0.00 0.00 2.43
3031 3264 3.710209 ACCTCAGCAGCATTTTACTCT 57.290 42.857 0.00 0.00 0.00 3.24
3033 3266 4.559862 AGTACCTCAGCAGCATTTTACT 57.440 40.909 0.00 0.00 0.00 2.24
3034 3267 7.494625 TGTTATAGTACCTCAGCAGCATTTTAC 59.505 37.037 0.00 0.00 0.00 2.01
3036 3269 6.414732 TGTTATAGTACCTCAGCAGCATTTT 58.585 36.000 0.00 0.00 0.00 1.82
3038 3271 5.614324 TGTTATAGTACCTCAGCAGCATT 57.386 39.130 0.00 0.00 0.00 3.56
3039 3272 5.815233 ATGTTATAGTACCTCAGCAGCAT 57.185 39.130 0.00 0.00 0.00 3.79
3040 3273 5.614324 AATGTTATAGTACCTCAGCAGCA 57.386 39.130 0.00 0.00 0.00 4.41
3041 3274 6.049149 TCAAATGTTATAGTACCTCAGCAGC 58.951 40.000 0.00 0.00 0.00 5.25
3042 3275 8.492673 TTTCAAATGTTATAGTACCTCAGCAG 57.507 34.615 0.00 0.00 0.00 4.24
3046 3279 9.537192 CCGTATTTCAAATGTTATAGTACCTCA 57.463 33.333 0.00 0.00 0.00 3.86
3047 3280 9.538508 ACCGTATTTCAAATGTTATAGTACCTC 57.461 33.333 0.00 0.00 0.00 3.85
3048 3281 9.895138 AACCGTATTTCAAATGTTATAGTACCT 57.105 29.630 0.00 0.00 0.00 3.08
3056 3289 9.438228 TCAGACATAACCGTATTTCAAATGTTA 57.562 29.630 0.00 0.00 0.00 2.41
3057 3290 8.330466 TCAGACATAACCGTATTTCAAATGTT 57.670 30.769 0.00 0.00 0.00 2.71
3059 3292 8.664798 TCTTCAGACATAACCGTATTTCAAATG 58.335 33.333 0.00 0.00 0.00 2.32
3061 3294 8.786826 ATCTTCAGACATAACCGTATTTCAAA 57.213 30.769 0.00 0.00 0.00 2.69
3062 3295 8.664798 CAATCTTCAGACATAACCGTATTTCAA 58.335 33.333 0.00 0.00 0.00 2.69
3063 3296 7.822334 ACAATCTTCAGACATAACCGTATTTCA 59.178 33.333 0.00 0.00 0.00 2.69
3064 3297 8.197988 ACAATCTTCAGACATAACCGTATTTC 57.802 34.615 0.00 0.00 0.00 2.17
3068 3301 6.275494 TGACAATCTTCAGACATAACCGTA 57.725 37.500 0.00 0.00 0.00 4.02
3071 3304 5.940470 AGGTTGACAATCTTCAGACATAACC 59.060 40.000 0.00 0.00 35.33 2.85
3072 3305 8.723942 ATAGGTTGACAATCTTCAGACATAAC 57.276 34.615 6.22 0.00 0.00 1.89
3074 3307 7.419057 GGGATAGGTTGACAATCTTCAGACATA 60.419 40.741 6.22 0.00 0.00 2.29
3076 3309 5.338381 GGGATAGGTTGACAATCTTCAGACA 60.338 44.000 6.22 0.00 0.00 3.41
3077 3310 5.119694 GGGATAGGTTGACAATCTTCAGAC 58.880 45.833 6.22 0.00 0.00 3.51
3078 3311 4.164221 GGGGATAGGTTGACAATCTTCAGA 59.836 45.833 6.22 0.00 0.00 3.27
3079 3312 4.164988 AGGGGATAGGTTGACAATCTTCAG 59.835 45.833 6.22 0.00 0.00 3.02
3081 3314 4.779993 AGGGGATAGGTTGACAATCTTC 57.220 45.455 6.22 4.47 0.00 2.87
3082 3315 4.325344 CCAAGGGGATAGGTTGACAATCTT 60.325 45.833 6.22 0.00 35.59 2.40
3083 3316 3.203040 CCAAGGGGATAGGTTGACAATCT 59.797 47.826 6.17 6.17 35.59 2.40
3084 3317 3.555966 CCAAGGGGATAGGTTGACAATC 58.444 50.000 0.00 0.00 35.59 2.67
3085 3318 3.669939 CCAAGGGGATAGGTTGACAAT 57.330 47.619 0.00 0.00 35.59 2.71
3089 3322 2.254787 GAGCCCAAGGGGATAGGTTGA 61.255 57.143 5.24 0.00 44.02 3.18
3092 3325 0.695803 CTGAGCCCAAGGGGATAGGT 60.696 60.000 5.24 0.00 44.02 3.08
3093 3326 0.695803 ACTGAGCCCAAGGGGATAGG 60.696 60.000 5.24 0.00 44.02 2.57
3094 3327 2.103153 TACTGAGCCCAAGGGGATAG 57.897 55.000 5.24 2.19 44.02 2.08
3095 3328 2.293586 ACTTACTGAGCCCAAGGGGATA 60.294 50.000 5.24 0.00 44.02 2.59
3099 3332 2.162681 CAAACTTACTGAGCCCAAGGG 58.837 52.381 0.00 0.00 38.57 3.95
3100 3333 3.140325 TCAAACTTACTGAGCCCAAGG 57.860 47.619 0.00 0.00 0.00 3.61
3101 3334 5.712152 AATTCAAACTTACTGAGCCCAAG 57.288 39.130 0.00 0.00 0.00 3.61
3102 3335 6.323739 AGAAAATTCAAACTTACTGAGCCCAA 59.676 34.615 0.00 0.00 0.00 4.12
3103 3336 5.833131 AGAAAATTCAAACTTACTGAGCCCA 59.167 36.000 0.00 0.00 0.00 5.36
3104 3337 6.332735 AGAAAATTCAAACTTACTGAGCCC 57.667 37.500 0.00 0.00 0.00 5.19
3105 3338 7.015877 CGTAGAAAATTCAAACTTACTGAGCC 58.984 38.462 0.00 0.00 0.00 4.70
3106 3339 7.015877 CCGTAGAAAATTCAAACTTACTGAGC 58.984 38.462 0.00 0.00 0.00 4.26
3107 3340 7.015877 GCCGTAGAAAATTCAAACTTACTGAG 58.984 38.462 0.00 0.00 0.00 3.35
3108 3341 6.483974 TGCCGTAGAAAATTCAAACTTACTGA 59.516 34.615 0.00 0.00 0.00 3.41
3109 3342 6.664515 TGCCGTAGAAAATTCAAACTTACTG 58.335 36.000 0.00 0.00 0.00 2.74
3110 3343 6.870971 TGCCGTAGAAAATTCAAACTTACT 57.129 33.333 0.00 0.00 0.00 2.24
3111 3344 8.662141 TCTATGCCGTAGAAAATTCAAACTTAC 58.338 33.333 0.00 0.00 36.50 2.34
3113 3346 7.681939 TCTATGCCGTAGAAAATTCAAACTT 57.318 32.000 0.00 0.00 36.50 2.66
3124 3357 6.726490 ACTAGGATTTTCTATGCCGTAGAA 57.274 37.500 2.19 2.19 45.41 2.10
3126 3359 6.586844 GCTAACTAGGATTTTCTATGCCGTAG 59.413 42.308 0.00 0.00 0.00 3.51
3128 3361 5.163343 TGCTAACTAGGATTTTCTATGCCGT 60.163 40.000 0.00 0.00 0.00 5.68
3130 3363 7.751768 ATTGCTAACTAGGATTTTCTATGCC 57.248 36.000 0.00 0.00 0.00 4.40
3137 3370 9.740710 ACTCTGTAAATTGCTAACTAGGATTTT 57.259 29.630 0.00 4.33 33.74 1.82
3138 3371 9.167311 CACTCTGTAAATTGCTAACTAGGATTT 57.833 33.333 0.00 0.00 0.00 2.17
3139 3372 8.540388 TCACTCTGTAAATTGCTAACTAGGATT 58.460 33.333 0.00 0.00 0.00 3.01
3140 3373 8.079211 TCACTCTGTAAATTGCTAACTAGGAT 57.921 34.615 0.00 0.00 0.00 3.24
3142 3375 7.981789 TCATCACTCTGTAAATTGCTAACTAGG 59.018 37.037 0.00 0.00 0.00 3.02
3143 3376 8.932945 TCATCACTCTGTAAATTGCTAACTAG 57.067 34.615 0.00 0.00 0.00 2.57
3144 3377 9.151471 GTTCATCACTCTGTAAATTGCTAACTA 57.849 33.333 0.00 0.00 0.00 2.24
3145 3378 7.880195 AGTTCATCACTCTGTAAATTGCTAACT 59.120 33.333 0.00 0.00 0.00 2.24
3146 3379 7.959651 CAGTTCATCACTCTGTAAATTGCTAAC 59.040 37.037 0.00 0.00 30.92 2.34
3151 3384 6.245115 TGCAGTTCATCACTCTGTAAATTG 57.755 37.500 0.00 0.00 30.92 2.32
3157 3390 2.149578 GCTTGCAGTTCATCACTCTGT 58.850 47.619 0.00 0.00 30.92 3.41
3160 3393 2.095869 CAGTGCTTGCAGTTCATCACTC 60.096 50.000 0.00 0.00 37.02 3.51
3161 3394 1.878088 CAGTGCTTGCAGTTCATCACT 59.122 47.619 0.00 0.00 38.53 3.41
3162 3395 1.875514 TCAGTGCTTGCAGTTCATCAC 59.124 47.619 0.00 0.00 0.00 3.06
3164 3397 1.875514 TGTCAGTGCTTGCAGTTCATC 59.124 47.619 0.00 0.00 0.00 2.92
3165 3398 1.878088 CTGTCAGTGCTTGCAGTTCAT 59.122 47.619 0.00 0.00 0.00 2.57
3167 3400 1.586422 TCTGTCAGTGCTTGCAGTTC 58.414 50.000 0.00 0.00 34.56 3.01
3168 3401 2.042686 TTCTGTCAGTGCTTGCAGTT 57.957 45.000 0.00 0.00 34.56 3.16
3169 3402 1.945394 CTTTCTGTCAGTGCTTGCAGT 59.055 47.619 0.00 0.00 34.56 4.40
3170 3403 1.945394 ACTTTCTGTCAGTGCTTGCAG 59.055 47.619 0.00 0.00 34.37 4.41
3171 3404 2.042686 ACTTTCTGTCAGTGCTTGCA 57.957 45.000 0.00 0.00 0.00 4.08
3172 3405 3.999663 AGATACTTTCTGTCAGTGCTTGC 59.000 43.478 0.00 0.00 31.79 4.01
3173 3406 5.527511 CAGATACTTTCTGTCAGTGCTTG 57.472 43.478 0.00 0.00 45.79 4.01
3187 3420 7.692460 TTTCTCAATCACAATGCAGATACTT 57.308 32.000 0.00 0.00 0.00 2.24
3190 3423 6.660521 AGGTTTTCTCAATCACAATGCAGATA 59.339 34.615 0.00 0.00 0.00 1.98
3192 3425 4.828939 AGGTTTTCTCAATCACAATGCAGA 59.171 37.500 0.00 0.00 0.00 4.26
3193 3426 5.130292 AGGTTTTCTCAATCACAATGCAG 57.870 39.130 0.00 0.00 0.00 4.41
3195 3428 6.855836 TGATAGGTTTTCTCAATCACAATGC 58.144 36.000 0.00 0.00 0.00 3.56
3196 3429 7.482743 CGTTGATAGGTTTTCTCAATCACAATG 59.517 37.037 0.00 0.00 32.05 2.82
3197 3430 7.390440 TCGTTGATAGGTTTTCTCAATCACAAT 59.610 33.333 0.00 0.00 32.05 2.71
3198 3431 6.708502 TCGTTGATAGGTTTTCTCAATCACAA 59.291 34.615 0.00 0.00 32.05 3.33
3199 3432 6.227522 TCGTTGATAGGTTTTCTCAATCACA 58.772 36.000 0.00 0.00 32.05 3.58
3200 3433 6.183360 CCTCGTTGATAGGTTTTCTCAATCAC 60.183 42.308 0.00 0.00 32.05 3.06
3201 3434 5.874810 CCTCGTTGATAGGTTTTCTCAATCA 59.125 40.000 0.00 0.00 32.05 2.57
3202 3435 6.106673 TCCTCGTTGATAGGTTTTCTCAATC 58.893 40.000 0.00 0.00 35.48 2.67
3203 3436 6.049955 TCCTCGTTGATAGGTTTTCTCAAT 57.950 37.500 0.00 0.00 35.48 2.57
3204 3437 5.477607 TCCTCGTTGATAGGTTTTCTCAA 57.522 39.130 0.00 0.00 35.48 3.02
3208 3441 4.828829 TCCTTCCTCGTTGATAGGTTTTC 58.171 43.478 0.00 0.00 35.48 2.29
3209 3442 4.903045 TCCTTCCTCGTTGATAGGTTTT 57.097 40.909 0.00 0.00 35.48 2.43
3210 3443 4.903045 TTCCTTCCTCGTTGATAGGTTT 57.097 40.909 0.00 0.00 35.48 3.27
3211 3444 4.903045 TTTCCTTCCTCGTTGATAGGTT 57.097 40.909 0.00 0.00 35.48 3.50
3213 3446 6.374333 TCAAAATTTCCTTCCTCGTTGATAGG 59.626 38.462 0.00 0.00 35.26 2.57
3214 3447 7.377766 TCAAAATTTCCTTCCTCGTTGATAG 57.622 36.000 0.00 0.00 0.00 2.08
3215 3448 7.308951 GGTTCAAAATTTCCTTCCTCGTTGATA 60.309 37.037 0.00 0.00 0.00 2.15
3216 3449 6.447162 GTTCAAAATTTCCTTCCTCGTTGAT 58.553 36.000 0.00 0.00 0.00 2.57
3217 3450 5.221165 GGTTCAAAATTTCCTTCCTCGTTGA 60.221 40.000 0.00 0.00 0.00 3.18
3219 3452 4.893524 AGGTTCAAAATTTCCTTCCTCGTT 59.106 37.500 0.00 0.00 0.00 3.85
3221 3454 5.453567 AAGGTTCAAAATTTCCTTCCTCG 57.546 39.130 3.62 0.00 35.70 4.63
3222 3455 6.493802 AGGTAAGGTTCAAAATTTCCTTCCTC 59.506 38.462 11.15 5.42 40.26 3.71
3236 3469 8.915036 TGCAAAACTAATTTAAGGTAAGGTTCA 58.085 29.630 0.00 0.00 0.00 3.18
3237 3470 9.923143 ATGCAAAACTAATTTAAGGTAAGGTTC 57.077 29.630 0.00 0.00 0.00 3.62
3238 3471 9.705290 CATGCAAAACTAATTTAAGGTAAGGTT 57.295 29.630 0.00 0.00 0.00 3.50
3242 3475 7.038658 AGCCCATGCAAAACTAATTTAAGGTAA 60.039 33.333 0.00 0.00 41.13 2.85
3244 3477 5.248248 AGCCCATGCAAAACTAATTTAAGGT 59.752 36.000 0.00 0.00 41.13 3.50
3247 3480 5.936956 CCAAGCCCATGCAAAACTAATTTAA 59.063 36.000 0.00 0.00 41.13 1.52
3248 3481 5.012561 ACCAAGCCCATGCAAAACTAATTTA 59.987 36.000 0.00 0.00 41.13 1.40
3252 3485 2.324541 ACCAAGCCCATGCAAAACTAA 58.675 42.857 0.00 0.00 41.13 2.24
3254 3487 1.130777 AACCAAGCCCATGCAAAACT 58.869 45.000 0.00 0.00 41.13 2.66
3255 3488 1.202627 TCAACCAAGCCCATGCAAAAC 60.203 47.619 0.00 0.00 41.13 2.43
3267 3539 2.762327 CCTCCCCAATCAATCAACCAAG 59.238 50.000 0.00 0.00 0.00 3.61
3737 4026 4.274147 TGTACTCCTTTTCCACAAAGCAA 58.726 39.130 0.00 0.00 0.00 3.91
3911 4202 6.653020 AGTACTGCACATCTTGAATGGAATA 58.347 36.000 0.00 0.00 0.00 1.75
3979 4277 3.381590 GGTCCAAATCCAAGCTGATAACC 59.618 47.826 0.00 0.00 0.00 2.85
3983 4281 1.683011 CCGGTCCAAATCCAAGCTGAT 60.683 52.381 0.00 0.00 0.00 2.90
4198 4505 6.367149 CGATATGTTGGTAGATCACAGATTGG 59.633 42.308 0.00 0.00 0.00 3.16
4220 4527 1.406539 GTGCATTCTTGGCCATTCGAT 59.593 47.619 6.09 0.00 0.00 3.59
4226 4533 0.896923 GATTGGTGCATTCTTGGCCA 59.103 50.000 0.00 0.00 0.00 5.36
4260 4567 9.760077 ATCTTGTATACAAAGGTATTCTAACCG 57.240 33.333 18.55 3.11 44.77 4.44
4292 4599 9.880064 GATCACAGATTGTCAATAATGAGATTG 57.120 33.333 17.02 7.73 35.88 2.67
4304 4611 3.084039 GCCCAAAGATCACAGATTGTCA 58.916 45.455 0.00 0.00 0.00 3.58
4308 4615 3.266772 TGTAGGCCCAAAGATCACAGATT 59.733 43.478 0.00 0.00 0.00 2.40
4336 4643 7.039882 ACTATAAGTTCTCACAACGGGTAATG 58.960 38.462 0.00 0.00 0.00 1.90
4406 4713 7.173218 CCAGAACTCAACTTAGAGCAACATAAA 59.827 37.037 0.00 0.00 39.26 1.40
4418 4725 6.373005 TTCCATCATCCAGAACTCAACTTA 57.627 37.500 0.00 0.00 0.00 2.24
4431 4738 3.703052 AGCAACTCCATTTTCCATCATCC 59.297 43.478 0.00 0.00 0.00 3.51
4475 4783 9.976511 CCTGACTCGGTAACATAGAAATAAATA 57.023 33.333 0.00 0.00 0.00 1.40
4495 4803 7.736893 AGTTACACATTTTAAGAGTCCTGACT 58.263 34.615 0.00 0.00 45.84 3.41
4496 4804 7.964604 AGTTACACATTTTAAGAGTCCTGAC 57.035 36.000 0.00 0.00 0.00 3.51
4497 4805 8.644216 TGTAGTTACACATTTTAAGAGTCCTGA 58.356 33.333 0.00 0.00 0.00 3.86
4572 4881 6.738114 ACTTGACACTAATGTTTGGAATGTG 58.262 36.000 0.00 0.00 39.95 3.21
4610 4921 7.067372 CAGTATGCCAGATCATCCAAACTTAAA 59.933 37.037 0.00 0.00 0.00 1.52
4625 4936 6.428465 TCGTCAAAAATTTACAGTATGCCAGA 59.572 34.615 0.00 0.00 42.53 3.86
4640 4951 7.493367 TCCACCAAAACTTAATCGTCAAAAAT 58.507 30.769 0.00 0.00 0.00 1.82
4688 4999 6.390504 TCCATCCTCTAAAAAGCTAGGGATA 58.609 40.000 0.00 0.00 32.30 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.