>input_sequence_28828
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----------------------------------------------------------ATGGCGCTCCTCC---TCCTCT
CGCTGCT------CCTGCTCTGCGCCCGCTCGCCGGAGCCGGCGATGGCGGGCGACCCGTTCGCCTACTTCGACTGGGAG
GCCTCGTACCAGTCGGCCCGCCCGCTGGGCGTCGCGCAGAAGGTCATCGCCATCAACGGCCAGTTCCCGGGGCCGCCGCT
GAACGTGACCACCAACTGGAACGTGGTGGTCAACGTCCGCAACGCCCTCGACGAGCCGCTCCTCCTCACCTGGCACGGCA
TCCAGCACCGCAAGACCCCGTGGCAGGACGGCGTCGCCGGCACCAACTGCCCCATCCCCGCCGGCTGGAACTGGACCTAC
CGCTTCCAGGTCAAGGACCAGGTAGGCAGCTTCTTCTACTCCCCCTCCGCCGCGCCGCTCCACCGCGCCGCCGGCGGCTA
CGGCGGCATCGTCGTCAACAACCGCGACGTCATCCCCATCCCCTTCCCCTTCCCCGA---CGGCGACCTGACGCTCTTCA
TCGGCGACTGGTACGTCAAGTCTCACAAGGACCTCCGGAGATCCCTCGACGCCGGCGCGCCCCTGGGACCTCCCGACGGC
GTGCTCATCAACGGGCTGGGCCCCTACCGCTACAACGACACCCTCGTGCCGCCGGCGATCTCCTACGAGCGGATCAATGT
GGAGCCGGGGAGGACCTACAGGCTGCGGGTGCACAACGTGGGGGTCTCCACCAGCCTCAATTTCAGGATCCAGGGCCACA
GCCTGCTGCTCGTGGAGACCGAGGGCTCATACACCTCGCAGCAGAACTACAGCAACATGGACATCCATGTCGGACAGTCC
TACTCCTTCCTGGTCACCATGGACCAGAACGCCAGCACCGACTACTACGTCGTCGCCAGCGCCCGCTTCGTCGCCGACCC
------------CG---------ACAAGCTCACCGGCGTCGCCATTCTGCACTACTCCAACTCCCAGGGTCCGGCCTCTG
GCCCTCTCCCTGCTGCCCCTGATGACCAGTATGACACCGCGTTCTCCATAAACCAAGCCAGATCCATCAGGTACTTAATT
ATTACTGCTTCCTCCACGCCACATTTTTGGTTTTCTCTAT---TCATATC-------------------------CTGAT
GCTGTAA-AAGTAAAACACACAACTGTTTTGTTTCAGATAGGTGGGATGTCACTGATGATGCTACATTTCGGTTTCTGTT
TGTTTGGAATGTTACTACTGA---------------------------------TGCTGCTGTAAAACACACAATTGTTT
TAATTGTTTCAGGTGGAATGTTACCGCCAGCGGCGCCCGCCCCAACCCGCAGGGTTCATTCCATTATGGTGATATTACCG
TGACCGATGTGTACTTGTTGCAGAGTCGGCCGCCCGAGCTCATAGACGGGCAACTGCGCTCTACTATCAATGGGATTTCT
TACATTGCTCCTTCCACTCCATTGATACTTGCACAGCTATTCAATGTCCCGGGAGTGTTCAAACTGGATTTCCCAAATCA
TCCGATGAATAGACTGCCAAAAGTCGACACCTCGGTTATAAATGGCACCTACAAAGGCTTTATGGAGATTATATTCCAAA
ACAACGCCACGACCGTGCAGAGCTATCACTTGGATGGATATGCATTCTTTGTCGTTGGGTAA-TTCCCTTG---------
-CACTTCCTCTTCTTCATCCTGA-CCTGCTCTGTTTACCTATTTTTTGGGTGGTGGTTCTTATTTCAGGATGGACTATGG
ATTGTGGACCGACAACAGTCGAGGTACCTACAACAAATGGGATGGTGTTGCACGGTCAACCATCCAGGTGCTGAAATTCA
TGTTTTGTTCTCTTTATGGATTTCTATATATTATATGGTCTGGAGAAACCTAA-------------------------GA
AAAATTATACCAAATCTGC-TTAACAA-GACAATCCACAGTAAGTTGTAGTAACGTGGGGGAAATCATAGAGGGTAAGAT
ATGTTTGTGTTTTTTGTAAGCCTGCTAGAATAACCAAATTATTATCTTACGGCCCCTGACTGAAGATAACAGTTATCATG
TGAGTCTACTAGGACTAGCAAAGATGTTTGCATGTACCTGACTGAAGAAATTGTGTCTTGTATAGAGTAAAATGCTGCTG
AGGTACTATAACATTTGAAATACGGTTATGTCTGAAGATTGTCAACCTATCCCCTTGGGCTCAGTAAGTTTGAATTTTCT
ACGGCATAGAAAATCCTAGTTAGCAATTTACAGAGTGATGAACTGCAAGCACTGACAGAAAGTATCTGCATTGTGATTGA
GAAAACCTATCAACGAGGAAGGAAATTTTGAACCTTACCTTAAATTAG--------------------------------
-------TTTTGCATGGGCTTGGTTGATTGATTGGGGAGGTTTTTGGACGAGAATGCAGGTATTCCCCGGTGCTTGGACT
GCTGTGCTCGTGTTCCTGGACAATGCAGGGATATGGAATTTGCGCGTGGAGAACCTGGACAGCTGGTACATGGGCCAAGA
ACTGTACATAAGCGTGGTGAACCCGGAGGAAGACCACAGCGACAAGACTCCGCTTCCTCTTCCGGATAACACAATTTTCT
GCGGCGCGCTCTCGAGCCTACAGAAGTGAGCTTAATATACTCTCT--GTTTCCTTCTTCGTTTGT----GGACA------
GATGCAGAGGAGAGTTACATAACAGGA-GATGCTGTTATATTGCTTGCAGAGAACAGTCTCATAGGTTCCAGTACTCGGG
AGCTTCGCGGGTTGGGAAGACGGTGTCTGCGGCGATGATCTCGACGACATGGTTGGCTGCTACCT----GGTTGCTGTAT
AGATAG--------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3A_1_TraesCS3A01G085900
GAGTACGAGTAGTTTTTTCTTTAAAGTGTGTGTG------------------------------TGCGTGAGAGAGAGAG
AGAT---------AGCGTAGTGTAATAAAAA--TCACCAAGTGTGCTTAGTCATAAGAAAACAAAAACACTGAAGAATGA
CTTCCGTTTCTAGATTTCTATTTTCATGGAAAAATACCAATTCATTTGAGGTCTGAACAAAAATAAGAAGCTCCGTCACT
TTTCTAAAAGATTATGAGTGTGGTTTTTTCATAGCTCGAGTTCCATGGCACCCCCATGAACAGTAAATTGGAAGAAAAAG
-TAGTAAAAATCCGAAACTTTGTGGCATTGATTGTGACCAGATGTCATATGTGCTTGGAAA------TTTTTGTGGACAA
ATAATATCCTAGGCGCTCACACGTAAAATAACAAAGTTGGTAATCAATTTTGTGTGCACTGTTGAGTAGAAC--------
TTTTTTTTGTCTTGAGCTCGTCGGACGTCATATGGGCACCAAATTTTGGAAGCATGGAAGTCATTTGGTCATAATCGATG
CCACAAAATTTCAGATTGTTTTTATGTTGTTACTTGTTTTTTTACTGTTCATGGAGATACCATGGAGCTGAGCTAGATTA
AAAATCTCTGAAAAGAATATTTGTTATTCTAACTCGCTATTTTATTATTTATTTTTCTTCCACCCAGGCCACATGAATGA
ACTTTTCCACAGATATTTTATGGAATATAACTCAA-TCTCATATGTACACATGACATTTTTTTTGGATTTTTTAAAACTA
TATCCAACTCAATTCAAAATTTCTAAAATAAAAAAGTG----TTTTTTAGGTAAATAAAAAA-GAGTGTGTGCCCCTCCC
CCGCAGAGC----ATAAAGTCCTTTGTTGGGCTGGCAACCAGCAGATGGGCTGGTTTCCGGGGGAAAGCAGAACG--GCA
TCTTCCTGCTTTTCCGCCCAAAAGAAAAAAAAAGTGC-------------TTTCCGCCC-----CCTTTCCCCATCTTCC
TCTGCTCGCTTCCCACTCCACTCCACTCCAC---------TCTGAGCC---GGCAGCAATGGCGCTCCTCC---TCCTCT
CGCTGCT------CCTGCTCTGCGCCCGCTCGCCGGAGCCGGCGATGGCGGGCGACCCGTTCGCCTACTTCGACTGGGAG
GCCTCGTACCAGTCGGCCCGCCCGCTGGGCGTCGCGCAGAAGGTCATCGCCATCAACGGCCAGTTCCCGGGGCCGCCGCT
GAACGTGACCACCAACTGGAACGTGGTGGTCAACGTCCGCAACGCCCTCGACGAGCCGCTCCTCCTCACCTGGCACGGCA
TCCAGCACCGCAAGACCCCGTGGCAGGACGGCGTCGCCGGCACCAACTGCCCCATCCCCGCCGGCTGGAACTGGACCTAC
CGCTTCCAGGTCAAGGACCAGGTAGGCAGCTTCTTCTACTCCCCCTCCGCCGCGCCGCTCCACCGCGCCGCCGGCGGCTA
CGGCGGCATCGTCGTCAACAACCGCGACGTCATCCCCATCCCCTTCCCCTTCCCCGA---CGGCGACCTGACGCTCTTCA
TCGGCGACTGGTACGTCAAGTCTCACAAGGACCTCCGGAGATCCCTCGACGCCGGCGCGCCCCTGGGACCTCCCGACGGC
GTGCTCATCAACGGGCTGGGCCCCTACCGCTACAACGACACCCTCGTGCCGCCGGCGATCTCCTACGAGCGGATCAATGT
GGAGCCGGGGAGGACCTACAGGCTGCGGGTGCACAACGTGGGGGTCTCCACCAGCCTCAATTTCAGGATCCAGGGCCACA
GCCTGCTGCTCGTGGAGACCGAGGGCTCATACACCTCGCAGCAGAACTACAGCAACATGGACATCCATGTCGGACAGTCC
TACTCCTTCCTGGTCACCATGGACCAGAACGCCAGCACCGACTACTACGTCGTCGCCAGCGCCCGCTTCGTCGCCGACCC
------------CG---------ACAAGCTCACCGGCGTCGCCATTCTGCACTACTCCAACTCCCAGGGTCCGGCCTCTG
GCCCTCTCCCTGCTGCCCCTGATGACCAGTATGACACCGCGTTCTCCATAAACCAAGCCAGATCCATCAGGTACTTAATT
ATTACTGCTTCCTCCACGCCACATTTTTGGTTTTCTCTAT---TCATATC-------------------------CTGAT
GCTGTAA-AAGTAAAACACACAACTGTTTTGTTTCAGATAGGTGGGATGTCACTGATGATGCTACATTTCGGTTTCTGTT
TGTTTGGAATGTTACTACTGA---------------------------------TGCTGCTGTAAAACACACAATTGTTT
TAATTGTTTCAGGTGGAATGTTACCGCCAGCGGCGCCCGCCCCAACCCGCAGGGTTCATTCCATTATGGTGATATTACCG
TGACCGATGTGTACTTGTTGCAGAGTCGGCCGCCCGAGCTCATAGACGGGCAACTGCGCTCTACTATCAATGGGATTTCT
TACATTGCTCCTTCCACTCCATTGATACTTGCACAGCTATTCAATGTCCCGGGAGTGTTCAAACTGGATTTCCCAAATCA
TCCGATGAATAGACTGCCAAAAGTCGACACCTCGGTTATAAATGGCACCTACAAAGGCTTTATGGAGATTATATTCCAAA
ACAACGCCACGACCGTGCAGAGCTATCACTTGGATGGATATGCATTCTTTGTCGTTGGGTAA-TTCCCTTG---------
-CACTTCCTCTTCTTCATCCTGA-CCTGCTCTGTTTACCTATTTTTTGGGTGGTGGTTCTTATTTCAGGATGGACTATGG
ATTGTGGACCGACAACAGTCGAGGTACCTACAACAAATGGGATGGTGTTGCACGGTCAACCATCCAGGTGCTGAAATTCA
TGTTTTGTTCTCTTTATGGATTTCTATATATTATATGGTCTGGAGAAACCTAA-------------------------GA
AAAATTATACCAAATCTGC-TTAACAA-GACAATCCACAGTAAGTTGTAGTAACGTGGGGGAAATCATAGAGGGTAAGAT
ATGTTTGTGTTTTTTGTAAGCCTGCTAGAATAACCAAATTATTATCTTACGGCCCCTGACTGAAGATAACAGTTATCATG
TGAGTCTACTAGGACTAGCAAAGATGTTTGCATGTACCTGACTGAAGAAATTGTGTCTTGTATAGAGTAAAATGCTGCTG
AGGTACTATAACATTTGAAATACGGTTATGTCTGAAGATTGTCAACCTATCCCCTTGGGCTCAGTAAGTTTGAATTTTCT
ACGGCATAGAAAATCCTAGTTAGCAATTTACAGAGTGATGAACTGCAAGCACTGACAGAAAGTATCTGCATTGTGATTGA
GAAAACCTATCAACGAGGAAGGAAATTTTGAACCTTACCTTAAATTAG--------------------------------
-------TTTTGCATGGGCTTGGTTGATTGATTGGGGAGGTTTTTGGACGAGAATGCAGGTATTCCCCGGTGCTTGGACT
GCTGTGCTCGTGTTCCTGGACAATGCAGGGATATGGAATTTGCGCGTGGAGAACCTGGACAGCTGGTACATGGGCCAAGA
ACTGTACATAAGCGTGGTGAACCCGGAGGAAGACCACAGCGACAAGACTCCGCTTCCTCTTCCGGATAACACAATTTTCT
GCGGCGCGCTCTCGAGCCTACAGAAGTGAGCTTAATATACTCTCT--GTTTCCTTCTTCGTTTGT----GGACA------
GATGCAGAGGAGAGTTACATAACAGGA-GATGCTGTTATATTGCTTGCAGAGAACAGTCTCATAGGTTCCAGTACTCGGG
AGCTTCGCGGGTTGGGAAGACGGTGTCTGCGGCGATGATCTCGACGACATGGTTGGCTGCTACCT----GGTTGCTGTAT
AGATAGACGAAGACATTGAATGGACTTGCTTTGTGGAAAAGGAGTACAGAAGGAGAAGAGATCATACAGTGGCAGTGCAG
AGACAGGAGTATTACATATGGTGGAGGAAGGGCTCCTGGGAGGGATGCTTGATTTTTTTGTTAGGTTCAAGTGATGAATG
CCCCC--AATTGTAGAGTACATGGAGCAGGAGAAAATTAATTATTCCATTCAAGATGTGCAGTA-------CTAGTTTTT
GTGCGTATGTGTTTACCGCTTCAAATTCGCCGCAGTGGTTATCAGCTTGGATTTGGACCGGAAGTCGGTCCCGGGCACGG
GCAGGCAT-----ATGGATACCAATTTGGTCTCCTGAATGAAGAGGGGAGGAAGTTGTAATGTGTTTGAAGTTGGACAGA
AAAGTGGACTTTTCCCAAATTGAAATGGCTGAGATGCAGTAGCGTGTGTCTTGCATTTTGTGATGCGATAATTTGTGATT
ATATATGCAAGCAGGC----ACTGCCAATCTGTGATCTACCAACATATCGAATGGCCAAGAATGCACCAATCGGGAGACA
TTTATACGGTTAGAATACCTTTGTATACAAGATCGGCACAATCTCATTATTGACAATCTGTGATCTTTGGGCCTACAAAA
AGCATTACCCGTTGTGAGAACTTATAGTTCACAGTTCAAAAAAAAAAGAACTTATAGTTCACCTGCATCTTTTTTATGTT
GCTCTAAGTTGAGTTCTGGATGATGGAAAATGGAGTTGCTATC-TTTCGATCTTGCAAAGAATATTTATTTCTATGTTAC
CGAGTC-AGGACTCTTAAAATGTGTAACTACAATTAGTGTCAGTTGACAAAAAGAAAAATTGCATATCAACTTAAAAATA
CACATTCCAAACATTAGTGTCAAGTAAAAAAA--CACAATTTTAAGTTTGGATGATCTGGCATACTGTAAATTTTTGACG
ATTAAGTTTTGGTGGATCTGCTACATGAAAAAAAGTTTTATCCCTAGCTTTTTAGAGGATGGAGGATA
>chr3D_1
GAGTACGAGTAGTTTTTTCTTTAAAGTGTGTGCGCGTGTGTATGCGTGTGGGTGCGCACGTGCATGCGTGAGAGAGAGAG
AGAGAGAGAGATGAGCGTAGTGTAATAAAAAAGTCACCAAGTGTGCTTAGTCATAAGAAGACAAAT--------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ACAGTAAATTTGAAGAAAAAA
ATAGTGAAAATCTGAAACTTTGTGGCATTGATTGTGACAAACTTTGTGTAATTAAAAAGTCACCAAGTTTTTGTGGACAA
ATAATATTCTAGGCGCTCATACATAAAATAACAAAATTGGTGCTCAAACTTGTGTGCACTGTTGAGTGTTGAGTAGAACT
TTTTTTTTGTCTTGAGCTCGTGGGACGTCATATGGGCACCAAATTTTGGAAGCACGAAAGTCATTTTGTCATAATCAATG
CCACGAAATTTCAGATTGTTTTTTATTTTGTTAC--TTTTTTTACTGTTCTTGGAGGTACGATGGAGCCGAGCCACATTA
CAAATCTCTGAAAAGATTATTTGTTATTCTGACTCGCTA-TTTATTATTTATTTTCTTCCGCCAGACCACATATGAATGA
ACTTTTTCAAAGATATTTTTTGGAATATAACTC-A-TCTAATATGTACACATGATATTTTGTTTGGATTTTTTAAAATTA
TATCCAACTCAATTTGAAATTTCTAAAATAAAAAAAGAGTGTTTTTTTAGGTAAATAAAAAAAGAGTGTGTGCCCCTCCC
CCTCAGAGC----ATAAAGTCCTTTGTTGGGCTGGCGAACAGCAGATGGGCCGGGTTCTGGGGGAAAGCAGAACGAAGCA
TCTTCCTGCTTTTGCGCCCAAAAGAAAAGAGAA------AAAAACCTGCTTTTCCGGCCCC-TTCCTTCCCCCATCTTCC
TCTGTTCGCTCCCCACTCCAGT----ACTCCACTCTGAGGTCTGAGCAGGGGGCAGCAATGGCGCTCCTCCACCTCCTCT
CCCTGCTCCTGCTCCTACTCTGC---------GCGGAGCCGGCGCTGGCGGGGGACCCCTTCGCCTACTTCGACTGGGAG
GTCGCCTACCAGTCGGCCCGCCCGCTGGGCGTCGCGCAGAAGGTCATCGCCATCAACGGCCAGTTCCCGGGGCCGCCGTT
GAACGTGACCACCAACTGGAACGTGGTGGTCAACGTCCGCAACGCCCTCGACGAGCCGCTCCTCCTCACCTGGCACGGCC
TCCAGCACCGCAAGAACTCATGGCAGGACGGCGTCACCGGCACCAACTGCCCCATCCCCGCCGGCTGGAACTGGACCTAC
CAATTCCAGGTCAAGGACCAGGTCGGCAGCTTCTTCTACTCCCCCTCCGCCTTGCCGCTCCACCGCGCCGCCGGCGGCTA
CGGCGGCATCGTCGTCAACAACCGCGACGTCGTCCCCATCCCCTTCCCCTTCCCCGACGGCGGCGACCTCACGCTCTTCA
TCGGCGACTGGTACCTCAGGTCCCACAAGGATCTCCGGAGGTCCCTCGACGCCGGCACGCCCCTGGGGGCCCCCGACGGC
GTGCTCATCAACGGGCTCGGCCCCTACCGCTACAACGACTCCCTCGTGCCGCCGGCGATCGCCTACGAGCGGATCAATGT
GGAGCCCGGGAGGACCTACAGGCTGCGGGTGCACAACGTGGGGGTCTCCACCAGCCTGAATTTCAGGATCCAGGGACACA
GCCTGCTGCTCGTGGAAACCGAGGGCTCCTACACCTCGCAGCAGAACTACAGCAACATGGATATTCATGTTGGACAGTCA
TACTCCTTCCTGGTCACCATGGATCAGAATGCCAGCACCGACTACTATGTCGTCGCCAGTGCCCGAT---TCGTCACCGA
CCCCGGCGCCGTCG---------ATAAGCTCACCGGCGTCGCCATTCTACATTACTCCAACTCCCAGGGTCCGGCCTCTG
GCCCTCTCCCTGCTGCCCCTGATGACCAGTATGACACTGCATTCTCCATAAACCAAGCCAGGTCCATCAGGTACTTAC--
-TTACTGCTTCCTCCACGCCACATTTTC-GTTTGTACTATTCATCATATC-------------------------CTGAT
GCTGTAA-A-GTAAAACACACAATTG-TTTGTTTCAGGTAGGTGGAATGTCACTGATGATGCTACATTTTGGTTTGTTTT
TGTTTGGAATGTTACTACTGATG-------------------------------TGCTGCTGTAAAACACACAATTGTT-
---TTGTTTCAGGTGGAATGTTACCGCCAGCGGTGCCCGCCCCAACCCGCAGGGTTCATTCCATTATGGTGACATTACCG
TGACCGATGTGTATCTGTTGCAGAGTCAGCCGCCCGAGCTCATAGACGGGCAACTGCGTTCTACTATCAATGGGATCTCT
TACATTGCTCCATCCACTCCATTGATACTTGCACAATTATTCAATGTCCCCGGAGTGTTCAAACTGGATTTCCCAAATCA
TCCGATGAACAGACTGCCAAAAGTCGACACCTCGGTTATAAATGGAACCTACAAAGGCTTTATGGAGATCATATTCCAAA
ACAACGCCACAACAGTGCAGAGCTATCACTTGGATGGATATGCATTCTTTGTCGTTGGGTAA-TTATCTTGCAACACCTT
TCATTTCCTCTTCTTCATCCAGA-TCTTCTTTGCTTAACTATGGTTGGTTATTCTCAT----TTTCAGGATGGACTATGG
ATTGTGGACTGACAACAGTCGAGGTACCTACAACAAATGGGATGGTGTTGCACGGTCAACAATCCAGGTGCTGAAATTCA
TGCCTTATTGTCCTTATGGATATCTACTTTACTTTGTGGATTATGTCTATTATACATAGTAGTAGTCAACAGAAACCCGA
GAAATTATACCATATCTGT-TTTAGAATGACAGTTTATAGAAGGTAGTTGTAACCTGGGGGGAACCATTTTTGTTAGTAG
TAAAAGTATGAGCTTTTAGTAAGCTTGCTAGAATTAAAAAACTAT---GTTTTGGTCCTTCTAATATTTTCTAGGAGATT
CGCGG-AATGGCAGATAAAAGCTATGGCGTGAGTCTATTCG------CAGAGTTGTTTATGTGTGCCTGACTGAAGAAAA
TGTGTCATGTATAGAGTAATCACATTAAGCAAAATTCTTAGGCACATCATTTGAAATAATATGTGGATGGCTAAACACAT
TCAAACAATCCTTTTTGGCTTAGTAATTTTC--------ATGGCATTGAAAAATCTGTA-------------AGTGATGA
ACTGAAAACATTAACAGACAGTTGCATTGCTTCCAGCCAGGGAACTGCTATATCTGAACTTTGA---------------T
GTATTATTTTTTTATGGGATCCGTTGATTGATTTGGGAGGTTTGTGGATGAGAATGCAGGTATTCCCGGGCGCTTGGACT
GCTGTGCTTGTGTTCCTTGACAATGCAGGGATATGGAATTTGCGCGTGGAGAACCTGGACAGCTGGTACATGGGGCAAGA
ACTGTACATAAGCGTGGTGAACCCGGAGGAGGACCACAGCGACAAGACGCCGCTTCCTCTACCAGATAACACAATTTTCT
GCGGCGCGCTCTCGAGCCTACAGAAGTGAGCTTAATTTACTCTCTCTGTTTCCTTTTTTGTTTGT----GGCAAGGAATG
GATGCAGAGGAGAGCAATATAACGGTA-GGA--TGTTGTATTGCTTGCAGAGAACAATCTCATAGGTTCCAGTACTCTGG
AGCTTCGCAGGTTGGGAAGACGGTGTCCACAGCGATGATCTCGATGACATGGTTGGCTGCTACCT----GGTTGCTATAT
AGATAGACGAAGACACTGCATGGACCTGTTTTGTGGAAATGAGGAAAGG-AGGAGAGAAAATCATACAGTGGCAGTGCAG
AGACAGGAGGATGTTTTT----------------------------------TTTTGG-GTTAGTTTAAAGCAATGGATG
CCCCC--AATTGTAGAGTAGATGGAGTAGGAGGAAATTAATCATCCCATTCAAGATGTGTAGTGCTACTAGCTAGTTTTT
GTGTGTATGTGTTTACTGCTTCAAATTCATCGCAGTCGTTGCCAGCTTGGATTTGGACCGGAAGTCGGTCCCGGGCACGG
GCACGCAT-----ATGGGTACCAACTTGGTCTCCTGAATGTAGAGGGGAGGAAGTTGTCATGTGTTTGAAATTGGACTGA
AAAGGAGTATCTTGCA------------------------------------------------------TTTTGTGATT
ATATATGCAAGCAGGC----ACT---------------------------------------------------------
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>chr3B_595
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----------AAAAGATTATTTGTTATTCTAACTCGCCA-------ATTTATTTTTCTTCCACCCAGACCACATGAATGG
ACTTTCCGT-AGATACTTTATGAAATATAACTC-ACTCTAATACATACACGTGATATTTTTTTTGGATTTTTTTAAC---
TATCCAACTCAATTTGAAATTTCTGAAATAAAAAAGATCATGCA------------------------TGTGCCCCTCCC
CCTCAGAGC----ATAAAGTCCTTTGTTGGGCTGGCAGTCAGCAGATGGGCCGGGTTCTGTGGGAAAGCAGAACGAAGCA
TCTTCCTGCTTTTCCTCCCAAAAGAAAAGAAAA------AAAGAAAAAACTGCT------------TTTCCCCATCTTCC
TCTGTTTGCTTCACACTCCAGTCTCCACTCCACTCTGAGGTCTGAGCC---GGCAGCAATGGCGCTCCTCCACCTCCTCT
CCCTGCT------GCTACTCTGC---------CCGGAGCCGGCGCTGGCGGGGGACCCGTTCGCCTACTTCGACTGGGAG
GTCACGTACCAGTCGGCCCGCCCGCTGGGCGTGGCGCAGAAGGTCATCGCCATCAACGGCCAGTTCCCGGGGCCGCCGCT
GAACGTGACCACCAACTGGAACGTGGTGGTGAACGTCCGCAACGCCCTCGACGAGCCGCTCCTCCTCACCTGGCACGGCC
TCCAGCATCGCAAGACCCCGTGGCAGGACGGCGTGGCCGGCACCAACTGCCCCATCCCCGCCGGCTGGAACTGGACCTAC
CAATTCCAGGTCAAGGACCAGGTCGGGAGCTTCTTCTACTCCCCCTCGGCCGCGCCGCTCCACCGCGCCGCCGGCGGGTA
CGGCGGCATCGTCGTCAACAACCGCGACGTCATCCCCATCCCCTTCCCCTTCCCGGACGGCGGCGACCTCACGCTCTTCA
TCGGCGACTGGTACGTCAGGTCCCACAAGGACCTCCGCAGGTCCCTCGACGCCGGCGCGCCCCTGGGGCCCCCCGACGGC
GTGCTCGTCAACGGCCTGGGGCCCTACCGCTACAACGACTCCCTCGTCCCGCCGGCGATCACCTACGAGAGGATCAATGT
GGAGCCCGGGAGGACCTACAGGCTGCGGGTGCACAACGTGGGGGTCTCCACCAGCCTGAATTTCAGGATCCAGGGACACA
GCCTGCTGCTCGTGGAGACCGAGGGCTCATACACCTCGCAGCAGAACTACAGCAACATGGACATCCATGTCGGTCAGTCC
TACTCCTTCCTGGTCACCATGGATCAGAACGCCAGCACCGACTACTACGTAGTCGCCAGCGCCCGCTTCGTCGTCGCCGA
CCCCGGTGCCGTCG---------ATAAGCTCACCGGCGTCGCCATTCTGCACTACTCCAACTCCCAGGGTCCGGCCTCTG
GCCCTCTCCCTGCTGCCCCTGATGACCAGTATGACACTGCATTCTCCATAAACCAAGCCAGATCCATCAGG----TAC--
-TTACTGCTTCCTCCACGCCACATTTTTGGTTTGTACTAT---TCATATATCATGTTTGTTTGTACAATTCATATCTGAT
GTTTGTTTGTAA---------AATTG-TTTGTTTCAGGTAGGTGGAATGTCACTGATG---CCACATTTTGGTTTCTGTT
CATTTGGAATGTTACTGATGCTACATTTTGTTTTGTGTTCATTTGAAATGTTACTGATGCTGTAAAACGCACAA------
---TTGTTCCAGGTGGAATGTCGCCGCGAGCGGTGCCCGCCCCAACCCGCAGGGTTCATTCCATTATGGTGACATTACCG
TGACTGATGTGTACTTGTTGCAGAGCCGGCCGCCCGAGCTCATCGACGGGCAACTGCGTTCTACTATCAATGGGATCTCT
TACATTGCTCCATCTACTCCATTGATACTTGCACAACTATTCAATGTCCCTGGAGTGTTCAAGTTGGATTTTCCAAATCA
TCCGATGAACAGACTGCCAAAAGTTGACACCTCGGTTATAAATTGCACCTACAAAGGCTTTATGGAGATTATATTCCAAA
ACAACGCCACAACCGTGCAGAGCTATCACTTGGATGGATATGCATTCTTCGTCGTTGGGTAAATTCTCTTG---------
-CATTTCCTCTTCTCCGTCAAATCTGTTTTTTTTTTACTTATGGTAGGTGTTTCTCCT----TTTCAGGATGGACTATGG
ACTGTGGACTGACAATAGTCGGGGTACCTACAACAAATGGGATGGAGTTGCACGGTCAACAATCCAGGTGCTGAAATTCA
TGTCTTATTGTCCTTATGGATATCTACTTTCCTTTATGGATGATGTCTATTATATATAGA---AGTCAACAGAAACCCGA
GAAAGTATACCATATCTGTTTTAGCAT-GACAGTTAATAGAAGGTAGTTGTAACCTGGGGTGAGCCATTTTTGCCAGTAG
TAAAAGTATGAGCTTTTAGTAAGCTTGCTAGAATTAAAAAACTAT---GTTCTGGTCCTTCTAATATTTGCTAGGAGATT
CGCGG-AATGGCAGATAAAAGCTATGACGTGAGTCTATTCA------CAGAGTTGTTTATGTCTGCCTGACTGAAGAAAA
TGTGTCA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACAGAAAGTTACATTGCTCCCAGCCCGGGAGCTGCTCTATCTGAACTTTGA---------------T
GTATTAGTCTTTCATGGGATTCGTTGATTGATTTGGGAGGTTTCTGGACGAGGATGCAGGTATTCCCCGGCGCTTGGACT
GCTGTGCTTGTGTTCCTGGACAACGCAGGGATATGGAATCTGCGCGTGGAGAACCTGGACAGCTGGTACCTGGGCCAAGA
ACTGTACATAAGCGTGGTGAACCCGGAGGAGGACCACAGCGACAAGACGCCGCTTCCTCTACCAGATAACACAATTTTCT
GCGGCGCGCTCTCGAGTCTACAGAAGTGAGCTTAATTTACTCTCT--GTTTCCA-TTTTGTTAGT----GGCAAGGAATG
GATGCAGAGGAGAGTAATGTAACGGTAGGATGTTGTTCTATTGCTTGCAGAGAACAATCTCATAGGTTCCAGTACTCGGG
AGCTTCGCGGGTTGGGAAGACGGTGTCCGCGGTGATGATCTCGATTGCATGGCTGGCTGCTAGCTACCTGGTTGATATAT
AGATAGACGAAGACACTGAATGGACATGTTTTGTGGA------------AAGTAGAAGAAATCAT--AGTGGCAGTGCAG
AAACAGGAGGATAG-ATATGGTGGAGGATGGGCTCATGGGAGGGATGCTTGATTTTTG-GTTAGGTTAAAGTGATGAATG
CCCCC--AATTGTAGAGTAGAAGGAATAGGAGGAAATTAATCATTCCATTCA---------------------AGTTTTT
GTGTGTATGTGTTTACTGCTTCAAATGCGCCGCAGTCGTTGTCAGCTTGGATCTGGACTGGAAGTCGGTCCCGGGCACGG
GCAGGCATTTCATATGGGTACCAACTTGGTCTTCTCAACGGATAGGGGAGGAATCTGTACCGTGTTTGAAATTTGAC---
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>chr3B_807
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--------------------------------------------------------------------TGTGCCCCTCCT
CCTCGGAGGATATATAAAGTCCTTTGTTGGGCTGGCGAACAGCAGATGGGCCGGGTTCCGGGGGAAAGCAGAACGAA-CA
TCTTCCTGCTTTTTTGCCCAAAAGAAAAGTAAAGTAAAAAAAAAACTGCTTTTCCGCCCCCGTTTCTTTCCCCATCTTCC
TCCTCTGTTCGCA---------CTCCACTCCACTCTGAGGTCTGAGCC---GGCGGCAATGGCGCTCCTCCACCTCCTCT
CCCTGCT------CCTACTCTGC---------CCGGAGCCGGCGCTGGCGGGGGACCCGTTCGCCTACTTCGACTGGGAG
GTCTCGTACCAGTCGGCCCGCCCGCTGGGCGTGGCGCAGAAGGTCATCGCCATCAACGGCCAGTTCCCGGGGCCGCCGCT
GAACGTGACCACCAACTGGAACGTGGTGGTGAACGTCCACAACGCCCTCGACGAGCCGCTCCTCCTCACCTGGCACGGCC
TCCAGCATCGCAAGAACTCGTGGCAGGACGGCGTCGCCGGCACCAATTGCCCCATCCCCGCCGGCTGGAACTGGACCTAC
CGCTTCCAGGTCAAGGACCAGGTCGGCAGCTTCTTCTACTCCCCCTCGGCCGCGGCGCTCCACCGCGCCGCCGGCGGGTA
CGGCGGCATCGTCGTCAACAACCGCGACGTCATCCCCATCCCCTTCCCCTTCCCGGACGGCGGCGACCTCACGCTCTTCA
TCGGCGACTGGTACGTCAGGTCCCACAAGGACCTCCGCAGGTCCCTGGACTCCGGCGCGCCCCTGGGGCCCCCCGACGGC
GTGCTCGTCAACGGGCTGGGGCCCTACCGCTACAACGACTCCATCGTGCCGCCGGCGATCACCTACGAGAGGATCAATGT
CGAGCCTGGGAGGACCTACAGGCTGCGGGTGCACAACGTGGGGGTCTCCACCAGCCTGAATTTCAGGATCCAGGGACACA
GCCTGCTGCTCGTGGAGACCGAGGGCTCCTACACCTCGCAGCAGAACTACAGCAACATGGACATCCATGTCGGTCAGTCC
TACTCCTTCCTGGTCACCATGGATCAGAACGCCAGCACCGACTACTACGTCGTCGCCAGCGCCCGCTTCGTCGCCGACCC
------------CGGCGCCGTCAATAAGCTCACTGGCGTGGCCATTCTGCATTACTCCAACTTCCAGGGCCCGGCCTCTG
GCCCTCTCCCTCCTCCCCCTGACGACCAGTATGACACTGCATTCTCCATAAACCAAGCCAGATCCATCAGG----TAC--
-TTACTGCTTCCTCCACGCCACATTTTTGGTTTGTGATAT---------------------------ATTCATATCTGAT
GCTGTAAAA-GTAAAGCACACAATTG-TTTGTTTCAGGTAGGTGGAATGTAACTGATG---CTACATTCTGGTTTGTGTT
CATCTGGAATGTTACTGATG------------------------------------------------------TTGTT-
---TTGTTTCAGGTGGAATGTTACCGCCAGCGGCGCCCGCCCCAATCCGCAGGGTTCATTCCATTATGGCGACATTACGG
TGACCGATGTGTACTTGTTGCAGAGTCGGCCGCCCGAGCTCATAGACGGGCAACTGCGTTCTACTATCAATGG-------
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>chr3B_2372
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----TTGCTCCTTCCACTCCATTGATACTTGCACAACTATTCAATGTCCCGGGAGTTTTCAAATTGGATTTCCCTAATCA
TCCGATGAATAGACTGCCAAAAGTCGACACATCGGTTATAAATGGCACCTACAAAGGCTTTATGGAGATTATATTCCAAA
ACAACGCCACGACCGTGCAGAGCTATCACTTGGATGGATATGCATTCTTTGTTGTTGGGTAA-TTCCCTTG---------
-CGCTTCCTCTTCTTCATCCTGA-CCTGCTCTGTTTACTTATGGGTGGC--GGTGGTTCTTATTTCAGGATGGACTATGG
ATTGTGGACCGACAACAGTCGAGGTACCTACAACAAATGGGATGGTGTTGCACGGTCAACAATCCAGGTGCTGAAATTCA
TGTTTTGTTCTCTTTATGGATTTCTATATATTATATGGTCTGGAAAAACCTAA-------------------------GA
AAAATTATACCAAATCTGC-TTAACAA-GACAATCCACAGTAAGTTGTAGTAACGTGGGGGAAATCATAGAGGGTAAG--
-ATATGTTTGTGTTTTTTGTAAGCCTGCTAGAATAACCAAATTATTATCTTACGGCCCCTGTAATATTTCTTGGGAGATT
AAAGGAAATGGCAGATACCAGTTATCATGTGAGTCTACTAGGACTAGCAAAGATGTTTGTATGTACCTGACTGAAGAAAT
TGTGTCTTGTATAGAGTAAAATGCTGCTGAGGTACTATAA-------CATTTGAAATATGGTTATGT---CTGAAGATTG
TCAACCTATCCCCTTGGGCTCAGTAATTTTGAATTTTCTATGGCATAGAAAATCTTAGTTAGCAATTTACAGAGTGATGA
ACTGCAAGCACTGACAGAAAGTATCTGCATTGTGATTGAGAAAACCTATCAACGAGGAAGGAAATTTTGAACCTTACCTT
GAATTAGTTTTGCATGGGTTTGGTTGATTGATTGGGGAGGTTTTTGGACGAGAATGCAGGTATTCCCCGGTGCTTGGACT
GCTGTGCTCGTGTTCCTGGACAATGCAGGGATATGGAATTTGCGCCTGGAGAACCTGGACAGCTGGTACATGGGCCAAGA
ACTGTACATAAGCGTGGTGAACCCAGAGGAAGACCACAGCGACAAGACTCCGCTTCCTCTTCCGGATAACACAATTTTCT
GCGGCGCGCTCTCGAGCCTACAGAAGTGAGCTTAATATACTCTCT--GTTTCCTTCTTCGTTTGT----GGACA------
GATGCAGAGGAGAGTTACATAACAGGA-GATGCTGTTATATTGCTTGCAGAGAACAGTCTCATAGGTTCCAGTACTCGGG
AGCTTCACGGGTTGGGAAGACGGTGTCTGCGGCGATGATCTCGACGACATGGTTGGCTGCTACCT----GGTTGCTGTAT
AGATAGACGAAGACATTGAATGGACCTGCTTTGTGGAAAAGGAGTACAGAAGGAGAAGAGATCATACAGTGGCAGTGCAG
AGACAGGAGTATTACATA---TGGAGGAAGGGCTCCTGGGAGGGATGCTTGATTTTTTTGTTAGGTTCAAGTGATGAATG
-CCCC--AATTGTAGAGTACATGGAGCAGGAGAAAATTAATCATTCCATTCAAGATGTGCAGTA-------CTAGTTTTT
GTGCGTATGTGTTTACCACTTCAAATTCGTCGCAGTCGTTGTCACCTTGGATTTGGACCGGAAGTCGGTCCCGGGCACTG
GCAGGCAT-----ATGGGTACCAACTTGGTCTCCTGAATGAAGAGGGGAGGAAGTTGTAATGTGTTTGAAATTGGACTGA
AAAGTGGACTTTTTTCAAATTGAAATGGCTGAGATGCAGTAGTGTGTGTCTTGCATTTTGTGATGTGATAATTTGTGATT
ATATATGCAAGCAGGCCCTAACTGACAATCTGTGATCTACCAACATGTCCAACGGCCAAGAATGCACCAATCGGGAGACC
TTTATAAGGTTAGAATACCTTTGTATGCAAGATTGGCATAATCTCATTGTCGACGATCTGTGACCTTTGGGCCTACAAAA
AGAATTACCCGTTGTG------------------------------AGAACTTATAGTTCACCTACATCTTTCTTATGTT
GCTCCAAGTTGAGTTCTAGATGATGGAAAATGGAGTTGCTATAATTTCGATTTTGTAAAGAAAATTTATTTCTAGGTTTA
CGGAGCTAGGACTCTTAAAATGTGCAACTACAATTAGTGTCAGTTGACAGAAAGAAAATTTGCATATCAGCTTAAAAATA
GGCATTCCAAACATTAGTGTCAAGTAAAAAAAA-CACAATGTTAAGTTTGAATGAACTGGCATACTGTGATTTTTTTACG
ATTAAGTTTTGGTGGATCTGCTACATGAAGAAAAGTTTAATGCCTA----------------------
>chr3D_3252
ATATGGTGGAGGATGGGCTCCTGGGATTTTGTTTTGTGTGTGTGTGTTAGGTTAAAGCGATGGATGCCCCCAATTGTAGA
GTACATGGAGCAGGAGGAAATTAATCATTCCATTCAAGATGTGCAGTACTAGTTTTTGTGTGTATGTGTTTACTGCTTCA
AATTTGTCACAGTCGTTGTCAGCTTGGATTTGGACCGGAAGTCCGTCCCGGGCACAGGCAGGCGTATGGGTACCAATCTG
GTCTCCTGAATGAAGAGGGGAGGAGGTTGTCATGTGTTTGATATTGGACTGAAAAGTGGACTTTTCTCAAAGAAAAACGT
TTCATAAAGGGGGACATGTTTTTGAGGTAGAAAAACGTTTCACCTTGACACGACGTATGTAAGTGTTGATCCGCTTGGTT
CATTGACGGAGCACTACCCCTTTTTTAATATAGAATCTTTTTTATCGATCATTTCCTCTCTTTTTTGATGGGATGGGTGC
GGGTCTCGATTGATCGCTAGCTCGTGGTCAAGCCTTTGTAAGTTACACGCGTCATTCCTCAATTGATCACAATGCTAACT
AGTAGAATGCCCGTGCGTTGTAAGCTCGCTAAC-----------------------------------------------
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TAAAAGTATGAGCTTTTAGTAAGCTTGCTAGAATTAAAAAA--ACTATGTTCTGGTCCTTCTAATATTTGCTAGGAGATT
CGC-G-AATGGCGGATAAAAGCTATGGCGTGAGTCTATTCA------CAGAATTGTTTATGTGTGCCTGACTGAAGAAAA
TGTGTCATGTATAGAGTAATCACATTAAGCAAAATTCTTAGGCACATAATTTTAAATAATATGTGGATGGCTAAAGACAG
TCAACCAATCCTTTTTGGCTTAGTAATTTTC--------ATGGCATTGAAAATTCTGTA-------------AGTGATGA
ACTGAAAACATTAACAGACAGTTACATTAACAGACAGTGA--------------TGAACTTTCA---------------T
GTATTAGTTTTTTATGGGATTGGTTGATTAATTTGGAGG---TTTGTACGAGAATGCAGGTATTCCCAGGTGCTTGGACT
GCTGTGCTCGTGTTCCTGGACAAGGCAGGGATATGGAATCTGCGCGTGGAGAACCTGGACAGCTGGTACATGGGGCAAGA
ACTGTTCATAAGCGTGGTGAACCCGGAGGAGGACCACAGCGACAAGACGCCGCTTCCTCTACCAGATAACACAATTTTCT
GCGGCGCGCTCTCGAGCCTACAGAAGTGAGCTTAATTTACTCTCTCTGTTTCCTTTTTTGTTTGTGGCAGGCATGGAATG
GGTGCAGAGGAGAGTAGTGTAACAGTAGGATGTTGTTCTATTGCTTGCAGGGAACAATCTCATAGGTTCCAGTAATCGGG
AGCTTCGAGGGTTGGGAAGATGGTTTCCGCGGTGATGATCTCGATGGCATGGTTGGCTGCTACCT----GGTTGCTGTAT
AGATAGATGAAGACACTGAATGGACCTGCTTTGTGGA------------AAGGAGAAGAAATCATACAGTGGCAATGCAG
AGACAGGAGGATAG-ATATGGTGGAGGATGGGCTCCTGGGAGGGATGCTTGATTTTTG-GTTAGGTTAAAGTGGTGGATG
-CCCCCCAATTGTAGAATAGATATAGTAGGAGGAAATTAATCATTCCATTCAAGATGTGCAGTA-------CTAGTTTTT
GTGTGTATGTGTCTACTGGTTCAAATTCGCCGCAGTCGTTGTCAGCTTGGATTTGGACTGGAAGTCGGTCCCGGGCACGG
GCAGGCATTTCATATGGGTACGGATTTGGTCTCCTGAATGAAGAGGGGAGGAAGTTGTAATGTGTTTGAAGTTGGACTGA
AAAGCGGACTTTTCTCAAATTGAAATGGCTGAGATGCAGTAGCGTGTGTCTTGCATTTTGTGATGTGAATTTTTGTGATT
ATATATGCAAGCAGGC----ACTGACAATCTGTGATCTACCAACATGTCGAACGGCCAATAATGCACCAATCGGGAGACC
TTTATAAGGTTAGAATACCTTTGTATACAAGATCAGCATAATCTCATTATCGACGATCTGTGATCTTTGGGCCTACAAAA
AGAATTACCCGTTGTG------------------------------AGAACTTATAGTTCACCTACATCTTTCTTATGTT
GCTCCAAGTTGAGTTCTAGATGATGGAAAATGGAATTGCTATAATTTTGATTTTGTAAAGAAAAATTATTTTTATGTTTA
CGGAGCTAGGACTCTTAAAATGTGTAACTACAATTAGTGCCAGTTAACAGAAAGAAAAATTGCATATCAGCTTAAAAATA
GACATTCCAAACATTAGTGTCGAGTAAAAAAAAACACAATGTTAAGTTTGGATGAACTGGCATACTGTAATTTTTTGATG
ATTAAGTTTTGGTCGATCTGCTACATGAGGAAAAGTTTAATCCCTAGCATTTTAGAGGATGGAGGATA
>SNPs
--------------------------------------------------------------------------------
---S-------------------------------------------------------S-----SSSSS-SSS-SS-S-
SS-SS--SS-SSSSS--S-SSSS-SSSSSSSSS-SSSS--S--SS-SSS--S-SS-SSS-SSSSS-SSS-SS--SSSSSS
S-SSSSSS-SSSS-SSS-S-S--SSS--SSSSS-SSSSS-S-SSSS-S-SSSSSSS--S----------S---------S
------------S-------------------------S-S--S-SSSSSS-S-S-SSSS--------------------
-------S--------------S------------S-----SS----S--------------------SSSS--------
---------------------S----------------------------------S---------S---------S---
----S------------------SSS--S----SSS--------------S-----S---S-------S----S-S----
S---------------S----------------------S---------------------------S------------
---------S-----------------------S-----S--------------S----------------------S--
--------------SS--------------------SS------------------------------------------
--S-----------------------------------S------------S--S-------------------------
----------------------------S------SS-------------------------------------------
--------------------S--SS-S-SS--------------------------------------------------
-S--------------S------SSSSSSSSS------------S-------S---------------------------
-S------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
---------------------------------------------------------------------S----------
------------------S---S-----------------S--------------------------S--S---------
---------------------------------------S--------------------S-------------------
------S--------------------------------------------------S-----------------S----
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------------------S-------------------------------------------------------
-------------------------------------S--S------------------------------------SSS
S--------------------------------SSS--------------------------------------------
---------S-------------S--S----------S-------S-----------------------S----------
-------------------------------------------------------------------------------S
SSS---------------------------------------------------------------------S-------
----------------------------------------------------------S-----------------S---
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------SS--S-S-------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSSS-SS-SS-S---S--SSSSSS--SSS-S--SS---SS-----SS-SSSS-SS-SSSSSS--S--SS-SSSSSSS--S
S---SSS-SSSS-SS--S--SSS---S-SSS-SSSSS--S-SSSS--S--SSS---S-SSSSSS-SS-S-SSSSSSSSSS
S-SSS--SSS-S-SSSS---S--SS-S-SSSS-SSSSS-S-S--SSSS--SSSSSSSSSSSSSS-S-SSSSS--SSS-S-
S-SS-S--SSSSS-SSSSS----S-----S--SSS-SS-SSSSSSS-SSS-S-SSS---S--S-SS-SSSSSSSSSS---
SSSS-SSSSS-S-SS--S---S--S---SSS---S-S--SS---S-SS--------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------S---S---------------------------------------
-----------------S-----------------------------------------------------------S--
-----------------------------------------------------------------S--------------
------------------------S---------------------S-----S--------------------------S
------S-------------------------------S-----------S---S-------------------------
--S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------S-------
----S------------S------------------------S--------S---S------S---------------SS
--SSS--------------------------------------------S-------------------S----------
S---------------------------------------S--------------S--------------S---------
-----------------------------S--------S---------S-------------------
>forward_291
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-------------------------------TAGCTCGAGTTCCATGGCAC-----------------------------
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>reverse_2161
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ATTACTGCTTCCTCCACGCC------------------------------------------------------------
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>forward_1944
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----CCTTCCTGGTCACCATGGAC--------------------------------------------------------
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>reverse_3166
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---------------------------------------------CTTACGGCCCCTGACTGAAG---------------
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>forward_2121
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---------------------ATGACCAGTATGACACCGCG---------------------------------------
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>reverse_3169
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------------------------------------------------ACGGCCCCTGACTGAAGATA------------
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>forward_2941
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-----------------------------------------ATGGTGTTGCACGGTCAACC-------------------
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>reverse_4533
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----------------------------------------------------TGGCCAAGAATGCACCAATC--------
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--------------------------------------------------------------------
