Multiple sequence alignment - TraesCS3A01G083400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G083400 chr3A 100.000 2219 0 0 1 2219 53567768 53569986 0.000000e+00 4098.0
1 TraesCS3A01G083400 chr3D 88.074 2222 150 59 1 2157 42089323 42087152 0.000000e+00 2529.0
2 TraesCS3A01G083400 chr3D 87.692 65 8 0 1031 1095 184381358 184381294 2.360000e-10 76.8
3 TraesCS3A01G083400 chr3B 85.598 2326 156 80 1 2218 65559121 65561375 0.000000e+00 2274.0
4 TraesCS3A01G083400 chr7A 81.657 169 20 5 13 172 681251642 681251476 1.790000e-26 130.0
5 TraesCS3A01G083400 chr7D 87.692 65 8 0 1031 1095 561529272 561529208 2.360000e-10 76.8
6 TraesCS3A01G083400 chr4D 87.692 65 8 0 1031 1095 46173966 46174030 2.360000e-10 76.8
7 TraesCS3A01G083400 chr4D 92.500 40 1 2 94 133 488483162 488483199 3.080000e-04 56.5
8 TraesCS3A01G083400 chr2D 87.692 65 8 0 1031 1095 5086396 5086332 2.360000e-10 76.8
9 TraesCS3A01G083400 chr5D 96.970 33 0 1 101 133 216979813 216979782 1.000000e-03 54.7
10 TraesCS3A01G083400 chr1D 92.500 40 0 3 94 133 66379401 66379437 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G083400 chr3A 53567768 53569986 2218 False 4098 4098 100.000 1 2219 1 chr3A.!!$F1 2218
1 TraesCS3A01G083400 chr3D 42087152 42089323 2171 True 2529 2529 88.074 1 2157 1 chr3D.!!$R1 2156
2 TraesCS3A01G083400 chr3B 65559121 65561375 2254 False 2274 2274 85.598 1 2218 1 chr3B.!!$F1 2217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 510 0.168348 GCTGACAAGTGAGCATGCAG 59.832 55.0 21.98 5.97 39.66 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 1510 0.324943 TAGCCCTCTTTGACTGGTGC 59.675 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.288948 TGTCGGGTAAAATGTGCGTAGT 60.289 45.455 0.00 0.00 0.00 2.73
143 147 2.303311 AGCCTTCTTTCTGGGTAGTGAC 59.697 50.000 0.00 0.00 31.66 3.67
174 178 6.019108 AGGAAAGGAACAAAATCCAGCTTAT 58.981 36.000 0.00 0.00 42.27 1.73
218 229 3.369756 CAGGAATAAAAACGTCGCTGCTA 59.630 43.478 0.00 0.00 0.00 3.49
256 274 3.629855 TGTGTGTGTGTAAATTGGTCTGG 59.370 43.478 0.00 0.00 0.00 3.86
260 278 3.568007 TGTGTGTAAATTGGTCTGGAAGC 59.432 43.478 0.00 0.00 0.00 3.86
261 279 3.568007 GTGTGTAAATTGGTCTGGAAGCA 59.432 43.478 0.00 0.00 0.00 3.91
346 370 8.469200 AGTGATTCAGAGAGTTATTCAGAGAAG 58.531 37.037 0.00 0.00 0.00 2.85
381 406 1.821753 TCAGTGAAGAGCTGAGCCTAC 59.178 52.381 0.00 0.00 37.98 3.18
451 476 2.348998 GTAGCTGGCTGGTGTGCT 59.651 61.111 6.33 0.00 39.30 4.40
484 510 0.168348 GCTGACAAGTGAGCATGCAG 59.832 55.000 21.98 5.97 39.66 4.41
529 561 2.993220 GTGACACATTATCTGCACACGA 59.007 45.455 0.00 0.00 0.00 4.35
571 605 8.818860 AGTCAAATATACAGTAGTGGTTGGTTA 58.181 33.333 1.92 0.00 0.00 2.85
579 613 4.021368 CAGTAGTGGTTGGTTAGTAGCAGT 60.021 45.833 0.00 0.00 32.55 4.40
611 647 1.128200 TGTTCAGCTGGTGGTGTAGT 58.872 50.000 15.13 0.00 41.91 2.73
659 699 3.919216 AGACACAAGTGATCTTCTTCCG 58.081 45.455 7.28 0.00 0.00 4.30
689 729 6.091441 GCAAATAAGTTGTCTAGGTCTCACAG 59.909 42.308 0.00 0.00 39.63 3.66
732 780 0.179037 AGCCGTGATGTGATGGATGG 60.179 55.000 0.00 0.00 0.00 3.51
750 798 4.443598 GGATGGGTTTTGTTTTGTTGCCTA 60.444 41.667 0.00 0.00 0.00 3.93
781 829 1.337260 ACACTTGAACTCGCCTGCTAG 60.337 52.381 0.00 0.00 0.00 3.42
887 943 2.643790 CGTCGTCGTCATCGTCCG 60.644 66.667 0.00 0.00 38.33 4.79
896 952 1.153449 TCATCGTCCGGCCAACATC 60.153 57.895 2.24 0.00 0.00 3.06
915 971 9.799106 CCAACATCCTATTTATAGATGGAAACT 57.201 33.333 4.44 0.00 32.05 2.66
940 996 0.979709 AGGAGAGCAGCACTGGCATA 60.980 55.000 0.00 0.00 44.61 3.14
941 997 0.532417 GGAGAGCAGCACTGGCATAG 60.532 60.000 0.00 0.00 44.61 2.23
942 998 0.463204 GAGAGCAGCACTGGCATAGA 59.537 55.000 0.00 0.00 44.61 1.98
947 1010 1.869767 GCAGCACTGGCATAGATACAC 59.130 52.381 0.00 0.00 44.61 2.90
954 1017 3.069300 ACTGGCATAGATACACAGAGCTG 59.931 47.826 0.00 0.00 33.57 4.24
959 1027 5.295950 GCATAGATACACAGAGCTGTTGAT 58.704 41.667 0.00 0.00 42.83 2.57
960 1028 5.757320 GCATAGATACACAGAGCTGTTGATT 59.243 40.000 0.00 0.00 42.83 2.57
963 1031 5.174395 AGATACACAGAGCTGTTGATTGAC 58.826 41.667 0.00 0.00 42.83 3.18
964 1032 3.198409 ACACAGAGCTGTTGATTGACA 57.802 42.857 0.00 0.00 42.83 3.58
971 1039 3.650647 TGTTGATTGACAGAGGGGC 57.349 52.632 0.00 0.00 0.00 5.80
972 1040 0.321564 TGTTGATTGACAGAGGGGCG 60.322 55.000 0.00 0.00 0.00 6.13
973 1041 1.377202 TTGATTGACAGAGGGGCGC 60.377 57.895 0.00 0.00 0.00 6.53
974 1042 1.841302 TTGATTGACAGAGGGGCGCT 61.841 55.000 7.64 2.69 0.00 5.92
975 1043 1.522580 GATTGACAGAGGGGCGCTC 60.523 63.158 22.73 22.73 0.00 5.03
976 1044 3.376935 ATTGACAGAGGGGCGCTCG 62.377 63.158 23.65 19.99 0.00 5.03
1120 1191 2.401766 CCCGAGTTCCACAGCATGC 61.402 63.158 10.51 10.51 42.53 4.06
1218 1289 2.486504 CACGTCTACGCCGGCTAA 59.513 61.111 26.68 11.40 44.43 3.09
1219 1290 1.153978 CACGTCTACGCCGGCTAAA 60.154 57.895 26.68 8.55 44.43 1.85
1225 1296 2.639883 CTACGCCGGCTAAACCTCCC 62.640 65.000 26.68 0.00 35.61 4.30
1228 1299 4.090588 CCGGCTAAACCTCCCGCA 62.091 66.667 0.00 0.00 40.65 5.69
1230 1301 2.669240 GGCTAAACCTCCCGCACT 59.331 61.111 0.00 0.00 34.51 4.40
1231 1302 1.449778 GGCTAAACCTCCCGCACTC 60.450 63.158 0.00 0.00 34.51 3.51
1232 1303 1.449778 GCTAAACCTCCCGCACTCC 60.450 63.158 0.00 0.00 0.00 3.85
1236 1307 2.676163 AAACCTCCCGCACTCCACAC 62.676 60.000 0.00 0.00 0.00 3.82
1251 1333 0.608130 CACACACCACCAGCTAGCTA 59.392 55.000 18.86 0.00 0.00 3.32
1252 1334 0.898320 ACACACCACCAGCTAGCTAG 59.102 55.000 18.86 16.84 0.00 3.42
1253 1335 0.898320 CACACCACCAGCTAGCTAGT 59.102 55.000 18.86 14.34 0.00 2.57
1254 1336 2.100197 CACACCACCAGCTAGCTAGTA 58.900 52.381 18.86 0.00 0.00 1.82
1255 1337 2.099921 CACACCACCAGCTAGCTAGTAG 59.900 54.545 18.86 12.29 0.00 2.57
1256 1338 2.291670 ACACCACCAGCTAGCTAGTAGT 60.292 50.000 18.86 13.03 0.00 2.73
1257 1339 2.099921 CACCACCAGCTAGCTAGTAGTG 59.900 54.545 22.36 22.36 0.00 2.74
1258 1340 1.067821 CCACCAGCTAGCTAGTAGTGC 59.932 57.143 18.86 8.17 0.00 4.40
1259 1341 2.028130 CACCAGCTAGCTAGTAGTGCT 58.972 52.381 18.86 10.43 43.79 4.40
1260 1342 3.215151 CACCAGCTAGCTAGTAGTGCTA 58.785 50.000 18.86 3.39 41.46 3.49
1268 1350 2.685897 AGCTAGTAGTGCTAGTGTGAGC 59.314 50.000 15.62 3.99 46.81 4.26
1277 1359 2.820330 GCTAGTGTGAGCAAGAGATCC 58.180 52.381 0.00 0.00 42.36 3.36
1299 1381 2.360844 TCGTGTGTGTTCCATGTTTGT 58.639 42.857 0.00 0.00 0.00 2.83
1300 1382 3.532542 TCGTGTGTGTTCCATGTTTGTA 58.467 40.909 0.00 0.00 0.00 2.41
1444 1536 4.766891 CCAGTCAAAGAGGGCTAAAATTGA 59.233 41.667 0.00 0.00 0.00 2.57
1451 1543 5.441718 AGAGGGCTAAAATTGATGAGTGA 57.558 39.130 0.00 0.00 0.00 3.41
1541 1633 5.596836 TCCAGTTTCACAGCTTTGATTTT 57.403 34.783 2.84 0.00 0.00 1.82
1644 1736 5.538433 AGCTTCCACCTCTCTCTACATAATC 59.462 44.000 0.00 0.00 0.00 1.75
1667 1759 6.845302 TCTAATCATGAGACAACAATTGCAC 58.155 36.000 5.05 0.00 0.00 4.57
1694 1795 2.262211 GCGCTGAATTCCCACAAAATC 58.738 47.619 0.00 0.00 0.00 2.17
1699 1800 3.237746 TGAATTCCCACAAAATCCAGCA 58.762 40.909 2.27 0.00 0.00 4.41
1833 1951 1.380380 CACCCTTGGGCCCTGAATC 60.380 63.158 25.70 0.00 0.00 2.52
1847 1965 3.127548 CCCTGAATCCATTCAAAGACACG 59.872 47.826 3.64 0.00 45.26 4.49
2040 2160 4.005650 TCCTGCTGCAGATTTAACAGAAG 58.994 43.478 30.10 9.27 36.91 2.85
2126 2247 3.559242 GCTACAGGCAGCTAAATCTTCAG 59.441 47.826 0.00 0.00 41.35 3.02
2136 2257 5.526846 CAGCTAAATCTTCAGACAGGATTCC 59.473 44.000 0.00 0.00 0.00 3.01
2157 2278 3.567164 CCCATCCATGATGAGTAAACAGC 59.433 47.826 5.67 0.00 42.09 4.40
2169 2290 9.421806 TGATGAGTAAACAGCCAAAATAAATTG 57.578 29.630 0.00 0.00 0.00 2.32
2184 2305 9.912634 CAAAATAAATTGTAAGCTGAGAAAGGA 57.087 29.630 0.00 0.00 0.00 3.36
2189 2310 2.972713 TGTAAGCTGAGAAAGGACAGGT 59.027 45.455 0.00 0.00 44.83 4.00
2193 2314 1.338579 GCTGAGAAAGGACAGGTCAGG 60.339 57.143 1.41 0.00 36.05 3.86
2218 2339 1.598701 GGCATTGCACTCCCAGGTTC 61.599 60.000 11.39 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.673862 CGCACATTTTACCCGACACATA 59.326 45.455 0.00 0.00 0.00 2.29
39 40 3.395639 CAAACCCTCTGTTAACTACGCA 58.604 45.455 7.22 0.00 35.67 5.24
46 47 2.435069 TCGACACCAAACCCTCTGTTAA 59.565 45.455 0.00 0.00 35.67 2.01
83 87 2.627510 AAAAGCCAACACAGCACCGC 62.628 55.000 0.00 0.00 0.00 5.68
85 89 2.558359 AGATAAAAGCCAACACAGCACC 59.442 45.455 0.00 0.00 0.00 5.01
86 90 3.923017 AGATAAAAGCCAACACAGCAC 57.077 42.857 0.00 0.00 0.00 4.40
127 131 2.632996 CACCAGTCACTACCCAGAAAGA 59.367 50.000 0.00 0.00 0.00 2.52
143 147 1.691196 TTGTTCCTTTCCTGCACCAG 58.309 50.000 0.00 0.00 0.00 4.00
174 178 4.080807 TGTTCCTTTTAGGTCACACTCACA 60.081 41.667 0.00 0.00 36.53 3.58
218 229 1.340991 ACACACCAGTTCCAAAGCTGT 60.341 47.619 0.00 0.00 0.00 4.40
256 274 5.066117 TCTGCATCATTCTCTGAATTGCTTC 59.934 40.000 14.18 0.00 39.55 3.86
260 278 4.576873 AGCTCTGCATCATTCTCTGAATTG 59.423 41.667 0.00 0.00 37.44 2.32
261 279 4.576873 CAGCTCTGCATCATTCTCTGAATT 59.423 41.667 0.00 0.00 37.44 2.17
394 419 3.305676 CCGTCCACCATATCATCACTCTC 60.306 52.174 0.00 0.00 0.00 3.20
402 427 1.480545 CAGACACCGTCCACCATATCA 59.519 52.381 0.00 0.00 32.18 2.15
451 476 0.941542 GTCAGCACGGCTAACAACAA 59.058 50.000 0.00 0.00 36.40 2.83
484 510 1.129437 CAGAAGCTTAAAGACGCAGCC 59.871 52.381 0.00 0.00 33.73 4.85
493 523 4.765273 TGTGTCACTGTCAGAAGCTTAAA 58.235 39.130 6.91 0.00 0.00 1.52
529 561 3.552132 TGACTGGTGTATGTGTGTGTT 57.448 42.857 0.00 0.00 0.00 3.32
571 605 7.661437 TGAACATGTCATCTTTTTACTGCTACT 59.339 33.333 0.00 0.00 0.00 2.57
575 609 5.570589 GCTGAACATGTCATCTTTTTACTGC 59.429 40.000 0.00 0.00 35.07 4.40
579 613 5.769662 ACCAGCTGAACATGTCATCTTTTTA 59.230 36.000 17.39 0.00 35.07 1.52
611 647 0.323999 TCCTGCCTTAGCCTCGTGTA 60.324 55.000 0.00 0.00 38.69 2.90
659 699 5.246307 ACCTAGACAACTTATTTGCAGTCC 58.754 41.667 0.00 0.00 39.01 3.85
689 729 1.682344 GACCCCAAAGGCCACATCC 60.682 63.158 5.01 0.00 40.58 3.51
695 735 0.322906 CTTCTGAGACCCCAAAGGCC 60.323 60.000 0.00 0.00 40.58 5.19
732 780 4.116961 GACCTAGGCAACAAAACAAAACC 58.883 43.478 9.30 0.00 41.41 3.27
750 798 0.923358 TTCAAGTGTTGGGTGGACCT 59.077 50.000 0.00 0.00 41.11 3.85
781 829 1.134694 GCCGGCGAGAAATTGTCAC 59.865 57.895 12.58 0.00 0.00 3.67
887 943 6.721318 TCCATCTATAAATAGGATGTTGGCC 58.279 40.000 0.00 0.00 0.00 5.36
935 991 3.742433 ACAGCTCTGTGTATCTATGCC 57.258 47.619 1.15 0.00 43.11 4.40
940 996 5.174395 GTCAATCAACAGCTCTGTGTATCT 58.826 41.667 2.97 0.00 44.13 1.98
941 997 4.931601 TGTCAATCAACAGCTCTGTGTATC 59.068 41.667 2.97 0.00 44.13 2.24
942 998 4.898320 TGTCAATCAACAGCTCTGTGTAT 58.102 39.130 2.97 0.00 44.13 2.29
947 1010 3.001414 CCTCTGTCAATCAACAGCTCTG 58.999 50.000 0.00 0.00 45.12 3.35
954 1017 1.648467 GCGCCCCTCTGTCAATCAAC 61.648 60.000 0.00 0.00 0.00 3.18
959 1027 4.069232 CGAGCGCCCCTCTGTCAA 62.069 66.667 2.29 0.00 38.49 3.18
972 1040 1.142778 GATCAACGGTGAGCTCGAGC 61.143 60.000 30.01 30.01 37.20 5.03
973 1041 0.863538 CGATCAACGGTGAGCTCGAG 60.864 60.000 19.16 8.45 38.14 4.04
974 1042 1.136774 CGATCAACGGTGAGCTCGA 59.863 57.895 19.16 0.00 38.14 4.04
975 1043 3.680525 CGATCAACGGTGAGCTCG 58.319 61.111 17.74 14.49 38.05 5.03
995 1063 2.126071 AGTCGCCCGACATGTTCG 60.126 61.111 21.14 5.25 46.76 3.95
996 1064 2.100631 CCAGTCGCCCGACATGTTC 61.101 63.158 21.14 0.00 46.76 3.18
997 1065 2.047274 CCAGTCGCCCGACATGTT 60.047 61.111 21.14 0.00 46.76 2.71
998 1066 4.082523 CCCAGTCGCCCGACATGT 62.083 66.667 21.14 0.00 46.76 3.21
1120 1191 3.499737 GGCGATGCCGTTGGTCTG 61.500 66.667 0.00 0.00 39.62 3.51
1218 1289 2.847234 TGTGGAGTGCGGGAGGTT 60.847 61.111 0.00 0.00 0.00 3.50
1219 1290 3.626924 GTGTGGAGTGCGGGAGGT 61.627 66.667 0.00 0.00 0.00 3.85
1225 1296 2.972505 GGTGGTGTGTGGAGTGCG 60.973 66.667 0.00 0.00 0.00 5.34
1228 1299 0.762842 TAGCTGGTGGTGTGTGGAGT 60.763 55.000 0.00 0.00 0.00 3.85
1230 1301 2.057830 CTAGCTGGTGGTGTGTGGA 58.942 57.895 0.00 0.00 0.00 4.02
1231 1302 1.672356 GCTAGCTGGTGGTGTGTGG 60.672 63.158 7.70 0.00 0.00 4.17
1232 1303 0.608130 TAGCTAGCTGGTGGTGTGTG 59.392 55.000 27.68 0.00 0.00 3.82
1236 1307 2.379972 ACTACTAGCTAGCTGGTGGTG 58.620 52.381 37.46 28.27 44.62 4.17
1257 1339 2.167281 TGGATCTCTTGCTCACACTAGC 59.833 50.000 0.00 0.00 43.08 3.42
1258 1340 4.619973 GATGGATCTCTTGCTCACACTAG 58.380 47.826 0.00 0.00 0.00 2.57
1259 1341 3.067320 CGATGGATCTCTTGCTCACACTA 59.933 47.826 0.00 0.00 0.00 2.74
1260 1342 2.159128 CGATGGATCTCTTGCTCACACT 60.159 50.000 0.00 0.00 0.00 3.55
1261 1343 2.200067 CGATGGATCTCTTGCTCACAC 58.800 52.381 0.00 0.00 0.00 3.82
1262 1344 1.827344 ACGATGGATCTCTTGCTCACA 59.173 47.619 0.00 0.00 0.00 3.58
1263 1345 2.200067 CACGATGGATCTCTTGCTCAC 58.800 52.381 0.00 0.00 0.00 3.51
1264 1346 1.827344 ACACGATGGATCTCTTGCTCA 59.173 47.619 0.00 0.00 0.00 4.26
1265 1347 2.200067 CACACGATGGATCTCTTGCTC 58.800 52.381 0.00 0.00 0.00 4.26
1266 1348 1.552337 ACACACGATGGATCTCTTGCT 59.448 47.619 0.00 0.00 0.00 3.91
1267 1349 1.662629 CACACACGATGGATCTCTTGC 59.337 52.381 0.00 0.00 0.00 4.01
1268 1350 2.964740 ACACACACGATGGATCTCTTG 58.035 47.619 0.00 0.00 0.00 3.02
1269 1351 3.589988 GAACACACACGATGGATCTCTT 58.410 45.455 0.00 0.00 0.00 2.85
1270 1352 2.093973 GGAACACACACGATGGATCTCT 60.094 50.000 0.00 0.00 0.00 3.10
1271 1353 2.271800 GGAACACACACGATGGATCTC 58.728 52.381 0.00 0.00 0.00 2.75
1272 1354 1.623311 TGGAACACACACGATGGATCT 59.377 47.619 0.00 0.00 0.00 2.75
1273 1355 2.093306 TGGAACACACACGATGGATC 57.907 50.000 0.00 0.00 0.00 3.36
1316 1398 9.044646 ACAGACAATCCTGAGCATATAGATTAT 57.955 33.333 0.00 0.00 37.59 1.28
1318 1400 7.015974 TGACAGACAATCCTGAGCATATAGATT 59.984 37.037 0.00 0.00 37.59 2.40
1319 1401 6.496218 TGACAGACAATCCTGAGCATATAGAT 59.504 38.462 0.00 0.00 37.59 1.98
1320 1402 5.835280 TGACAGACAATCCTGAGCATATAGA 59.165 40.000 0.00 0.00 37.59 1.98
1321 1403 6.094193 TGACAGACAATCCTGAGCATATAG 57.906 41.667 0.00 0.00 37.59 1.31
1414 1506 1.625818 CCCTCTTTGACTGGTGCTACT 59.374 52.381 0.00 0.00 0.00 2.57
1418 1510 0.324943 TAGCCCTCTTTGACTGGTGC 59.675 55.000 0.00 0.00 0.00 5.01
1444 1536 4.220693 TGGGTCGATGAAATTCACTCAT 57.779 40.909 0.00 0.00 36.21 2.90
1490 1582 4.823989 CCAATCTGGTCTGTCTTTGAACTT 59.176 41.667 0.00 0.00 31.35 2.66
1491 1583 4.392940 CCAATCTGGTCTGTCTTTGAACT 58.607 43.478 0.00 0.00 31.35 3.01
1492 1584 3.057946 GCCAATCTGGTCTGTCTTTGAAC 60.058 47.826 0.00 0.00 40.46 3.18
1493 1585 3.149196 GCCAATCTGGTCTGTCTTTGAA 58.851 45.455 0.00 0.00 40.46 2.69
1494 1586 2.106338 TGCCAATCTGGTCTGTCTTTGA 59.894 45.455 0.00 0.00 40.46 2.69
1495 1587 2.507484 TGCCAATCTGGTCTGTCTTTG 58.493 47.619 0.00 0.00 40.46 2.77
1496 1588 2.957402 TGCCAATCTGGTCTGTCTTT 57.043 45.000 0.00 0.00 40.46 2.52
1497 1589 2.040813 ACATGCCAATCTGGTCTGTCTT 59.959 45.455 0.00 0.00 40.46 3.01
1498 1590 1.632409 ACATGCCAATCTGGTCTGTCT 59.368 47.619 0.00 0.00 40.46 3.41
1499 1591 2.119801 ACATGCCAATCTGGTCTGTC 57.880 50.000 0.00 0.00 40.46 3.51
1500 1592 2.440409 GAACATGCCAATCTGGTCTGT 58.560 47.619 0.00 0.00 40.46 3.41
1501 1593 1.747355 GGAACATGCCAATCTGGTCTG 59.253 52.381 0.00 0.00 40.46 3.51
1644 1736 6.745907 CAGTGCAATTGTTGTCTCATGATTAG 59.254 38.462 7.40 0.00 0.00 1.73
1667 1759 0.449388 GGGAATTCAGCGCAGTTCAG 59.551 55.000 11.47 0.00 0.00 3.02
1694 1795 1.812571 GGATGTTTGTGGTAGTGCTGG 59.187 52.381 0.00 0.00 0.00 4.85
1699 1800 0.398696 TGCCGGATGTTTGTGGTAGT 59.601 50.000 5.05 0.00 0.00 2.73
1833 1951 6.668323 ACTAAACAATCGTGTCTTTGAATGG 58.332 36.000 0.00 0.00 36.80 3.16
1847 1965 5.850931 CGGAGTCGGTTTAACTAAACAATC 58.149 41.667 12.99 3.99 45.50 2.67
2126 2247 3.073503 TCATCATGGATGGGAATCCTGTC 59.926 47.826 0.00 0.00 40.15 3.51
2136 2257 3.567164 GGCTGTTTACTCATCATGGATGG 59.433 47.826 6.39 0.90 40.15 3.51
2151 2272 7.930865 TCAGCTTACAATTTATTTTGGCTGTTT 59.069 29.630 0.00 0.00 38.95 2.83
2157 2278 9.143631 CCTTTCTCAGCTTACAATTTATTTTGG 57.856 33.333 0.00 0.00 0.00 3.28
2169 2290 3.006967 TGACCTGTCCTTTCTCAGCTTAC 59.993 47.826 0.00 0.00 0.00 2.34
2184 2305 1.362224 ATGCCTGTAACCTGACCTGT 58.638 50.000 0.00 0.00 0.00 4.00
2189 2310 1.073763 AGTGCAATGCCTGTAACCTGA 59.926 47.619 1.53 0.00 0.00 3.86
2193 2314 0.811281 GGGAGTGCAATGCCTGTAAC 59.189 55.000 18.18 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.