>input_sequence_86681
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------------------------------ATGTCGGGCGACTGGGGCCCGGTGCTGATCGCGACGGCCTTCTTCGTGGT
GATGCTGCCGGGGCTGATCTGCGAGATCCCCGGCGGCGGGGGCCGCGGCCGGCCCGAGTTCCACAGCATGCAGACCAACG
GCATCGCCATGTTCGTCCACACCGTCATCTTCTTCGCCTTCTGCGCCATCTTCATGGTCGCCGTCGGCGTCCACGTCTAC
GCCGGCTAA-----------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G083400
AAACAAGGTCAGTAGTTACAGTATGTGTCGGGTAAAATGTGCGTAGTTAACA---GAGGGTTTGGTGTCGAGTCGCGGTA
GCGCGCGCGGTGCTGTGTTGGCTTTTATCTACAAAGCGGGGCGAAAGCCTTCTTTCTGGGTAGTGACTGGTGCAGGAAAG
GAACAAAATCCAGCTTATGTGAGTGTGACCT-------AAAAGGAACAGGAATAAAAACGTCGCTGCTACAGCTTTGGAA
CTGGT-------GTGTGTGTGTAAATTGGTCTGGAAGCAATTCAGAGAATGATGCAGA------GCTGCTGCTGCTTCAG
TGTATCCTTGCATTCAGGCTGCAAGTGATTCAGAGAGTTATTCAGAGAAGGATGCAGAGCTGCTTCAGTG-AAGAGCTGA
GCCTACTCTTGAGAGAGTGAGAGTGATGATATGGTGGACGGTGTCTGTCTTGGCTACTGTAGCTGGCTGGTGTGCTTGTT
GT-TAGCCGTGCTGACAAGTGAGCATGCAGGC----TGCGTCTTTAAGCTTCTGACAGTGACACATTATCTG--CACACG
A--ACACACACATACACCAGTCAAATATACAGTAGTGGTTGGTTAGTAGCAGTAA--AAAGATGACATGTTCAGCTGGTG
GTGTAGTACACGAGGCT-AAGGCAGGATGATG---AGAGACACAAGTGATCTTCTTCCGGACTGCAAATAAGTTGTCTAG
GTCTCACAGGATGTG------GCCT--TTGGGGTCTCAGAAGCCGTGATGTGATGGATGGGTTTTGTTTTGTTGCCTAGG
TCCACCCAACACTTGAACTCGCCTGCTAGTGACAATTTCTCGCCGGCCGGCCG--------CCACGCCCTGGACGGCACG
GCAGCTCGCCCGATCTGGTCACGCCAGACGCCACACTGTCATCACCGTCGTCGTCATCGTCCGGCCAACATCCTATTTAT
AGATGGAAACTTAGCTAGGAGAGCAGCACTGGCATAGAT-------ACACAGAGCTGTT-----GATTGACAGAGGGGCG
CTCGAGCTCACCGTTGATCGGACGAA---CATGTCGGGCGACTGGGGCCCGGTGCTGATCGCGACGGCCTTCTTCGTGGT
GATGCTGCCGGGGCTGATCTGCGAGATCCCCGGCGGCGGGGGCCGCGGCCGGCCCGAGTTCCACAGCATGCAGACCAACG
GCATCGCCATGTTCGTCCACACCGTCATCTTCTTCGCCTTCTGCGCCATCTTCATGGTCGCCGTCGGCGTCCACGTCTAC
GCCGGCTAAACCTCCCGCACTCCACAC-----------ACCACCAGCTAGCTAGTAGTGCTAGTGTGAGCAAGAGATCCA
TCGTGTGTGTTCCATGTTTGTATTTTTTACTCTATTTATAATC---TATATGCTCAGGATTGTCTGTCAGTTCATCAACC
TGTGATTTATTGAATGGTTGATTTGAGCCATACCCCAAAAAATATCTAG-------GTGCAATTCAGTAGCACCAGTCAA
AGAGGGCTAAAATTGATGAGTGAATTTCATCGACCCAAGAAAAAATATCTCAGAAGGAAAAAAGTTCAAAGACAGACCAG
ATTGGCATGTTCCAGTTTCACAGCTTTGATTTTAAAAAAAACTTTGATTTACATGCGAACAGACACATCACAACCAGCTT
TTGTTCCTTCTTCCTTCAGTGGAACCAACAGAGCTTCCACCTCTCTCTACATAATCTAATCATGAGACAACAATTGCAC-
--------TGAACTGCGCTGAATTCCCACAAAATCCAGCACTACCACAAACATCCGGCAGCGAATCAA-----------T
CACCGGCGTCTTCGCAAATGTGGTTATTGCCTCCTGCTG------CTGGAAGGAGAAGAGGCCATCTTTCCCTCGACGTA
CTGAGCGAATTTCACCCTTGGGCCCTGAATCCATTCAAAGACACGATTGTTTAGTTAAACCGACTCCGGCGAGTTCTCAT
GGCAAACCGTTGCACAAGGTAG--GGAGGCCACTCACAGGAATTTTGCAGTGAGAGTTGAGCTCGGCCAGCATCTGCTGC
CGACGCTCCTTGGCCACCTCCTCTACCCGCAACGCCCTCTGGCAAGCTTCCATCTGCTCCTGCTGCAGATTTAACAGAAG
TGTTTCTTCAGTACTGACATTTTTTAAAACAGAAAATTCAAATATATTGCAAGTTACAGTAATGCTACAGGCAGCTAA-A
TCTTCAGACAGGATTCCCATCCATGATGAGTAAACAGCCAAAATAAATTGTAAGCTGAGAAAGGACAGGTCAGGTTACAG
GCATTGCACTCCCAGGTTC
>chr3D_1
AAACAAGGTCAGTAGTTACAGCATGTGTCGGGCAAAATGAGTGTAGGTCACAAAGAAGGGTTTGGTGTCGAGTCGTGGTA
GCGAGCCC--TGCTGTGTTGGCTTTTATCTACAAAGCGGGGCGAAAGCCTGCTTTCTGGGTAGTGAGTGGCGCAGAAAGG
GAACAAAATCCAGCTTAGGTGAGTGTGACCTCGTCTCGAAAAGGAACAGGAATAAAAACGTCGCTGCTCCAGCTTTGGAA
CTGGC-----------GTGTGTAAATTGATATGAAAGTGATTCAGATAATAATGCAGAGCTGCTGCTGCTGCTGCTTCAG
TGTAGCCTTGCATTCAGGCTGCAAGTGATTCAGAGAGTTATTCAGAGAATGATGCAGAGCTGCTTCGGTGAAAGAGCTGA
GCCTAGTCTTGAGAGAGCCAGAGTGAGGATATGGTGGACGGTGTCTGTCTTGGCTACTGTAGCTGGCTGGTGTGCCTGTT
GTGTAGCCGTACTGACAAGTGAGCATGCATGCAGGCTGCGTCGTTAAGCTTCTGACAGTGACACATTATCTG--CACACG
GACACACACACATACACCAGTCAAATATACAGTAGTGGTTGGTAC-TAACAGGAA--AAAGATGACACGTTCAGCTGGTG
GTGTAGCACACGAGGCT-AAGGCAGAATTATCAGAAGAAACACAGGTGATCTTCCTCCAGACTGCAAAAAAGTTGTCTAG
GTCTCACAAGATGTT------GCAGCCTTGGGGTCTCAGAAGCCGTGATATGATGGATGCGTTTTGTTTTGTTGCCCCGG
TCCACTCAACACTTGAACTCGCCTGCTAATGACAATTTCTCGCCGGCCGGCCGGCCGGCCCTC-CTCCCCGGACGGCACG
GCAGCTCGACTGATCTGGTCACGGTC-ACGCCACACTATCATCACCGTCGTCGTCATCGTCTCGCCAACA-TCTATTTAT
AGATGGAAACCTAGCTGGGAGAGCAGCACTAGCATTAGTAAGACGGACAGAGAGCTCTT-----GAGGGAGGGGCGGC--
-----GCTCACCGTTGATCGGA-----TCCATGTCGGGCGACTGGGGCCCGGTGCTGATCGCGACGGCCTTCTTCGTGGT
GATGCTGCCGGGGCTCATCTGCGAGATCCCCGGCGGCGGGGGGCGCGGCCGGCCCGAGTTCCACAGCATGAAGACCAACG
GCATCGCCATGTTCGTCCACACCGTCATCTTCTTCGCCTTCTGCGCCATCTTCATGGTCGCCGTCGGCGTCCACGTCTAC
GCCGGCTAGCCCTCCGGCGCCATACATACTACAGCAAGACCACCAGCTAGCT---------------------------A
TCGTGTGTGTTCCATGTTTGATTTTTTTTCTCTCTTCTTTTATCTA-ATATGCTCAGGATTGTCTGTCAGTTCATCAACC
TGTGATTTATTGAATGGTTGATTTGAGCCATACCGCAAAAAATACCCAAAAAACAAGAAATTCAT--------CAGTGAA
AGAGGGCTAAAATTGCTGAGTGGATTTCATCG---CAAGAAAAAATATCTAAGAAAAAAAATG----------AGACAAG
ATTGGCATGTTCCAGTTTCACAGCTTTGATTTAGGAAAAAACTTTGATTTACATGCGAACAGACACATCACAACCAGCTT
TTGTTCCTTCTTCCTTCAGTGGAACCAACAGAGCTTCCACCTCTCTCTACATAATTTAATCATGAGACAACAATTGCAT-
--------TGAACTGCGTTGAATTCCCACAAAATTCAGGGCTACCACAGACATCCCGCAGCGAATCAATCACCGGTCAGT
CACCGGCGTCTTCACAAATGGGGTTATTGCCTCCTGCTGCTGCTGCTGGAAGGAGAAGTGGCCATCTTTCCCTCGACGTA
CTGAGCGAATTTCACCCTTGGGCCCTGAATTCATCCAAAGACACAATTGTTTAGTTAAACCGACTCCGGCAAGTTCTCAT
GCCAAACCGTTGCACAAGGTAG--GGAGGCCACTCACAGGAATTTTGCAGTGAGAGTTGAGCTCAGCCAGCATCTGCTGC
CGACGCTCCTTGGCCACCTCCTCTACCCACAACGCCCTCTCGCAAGCTTCCATCTGCTCCTGCTGCAGATTTAACAGAAA
TGTTTCTTCAGTACTGAGATTTTCTTTTAAACAAAAGGCAAGTATATTGCAAGTCACAGTAATGCTACAGGCAGCTAAAA
TCTTCAAACAGGATTCTCAATGAAGATGAGTTAACAG-------------------------------------------
-------------------
>chr3B_1
AAACAAGGTCAGTAGTTACAGCGTGTGTGGTGTAAAATGAGCTCAGGTAACAAAGGAGGGTTTGGTGTCGAGTCGCGGT-
-----------GCTGTGTTGGACTTTATCTACAAAGCGGGGCGAAAGCCTGCTTTCTGAGTAGCGAGTGCTGCAGGAAAG
GAACAAAATCCAGCTTAGGTGAGTGTGACCTCGTGTC-AAAAGCAACATACAGGAAGAATTGTGTGCTCGGGGGAGGGGG
TGTGTCTGTGCGGTGTCTCTGTAAATTGGTCTGAAAGTGATTCAGAGAATGATGCAGAGCAGCTGCTGCTTGTGCTTCAG
TCAATCCTTGCATTCAGGCTGCAAGTG------------ATTCAGAGAATGATGCGGAGCTGCTTCAGTGAA-GAGCTGA
GCCTGGTCTTCAGAGTCTCACAGTGAGGATGTGGTGGACGGTGTCTGTCTTGGCTACTGTAGCTGGCCGGTGTGCCTGAT
GTGTAGCCGTGCTGACAAGTGAGCATACATGCAGGCTGCGTCGTTAAGCTTCTGACAGTGACATACAATCTGCACACACA
CACACACATACATACACCAGTCAAGTGTACAGTGGTTAGTTAGTGGCATCAGGAAACACAGATCACATGTTCAGCTGGTG
TAGTACACGAGGCAACGCAAGGCAAGATGATG---AGAGACACAAGTGATCTTCTTCCAGACTGCAAATAAGTTGCCTAG
GTCTCACAAGATGTAGTGGTAGCCT--TTGGGGTCTCAGAAGCCGTGATGTGATGGATGCGTTTTGTTTTGTTGCCTCGG
TCCACCCAACACT-GAGCTCGCCTGCTAATGACAATTCCTCGCCGGCCGGCCGGCCGGCCGCCACTCCCTGGACGGCACG
GCAGCTCGCCCGATCTGGTCACGCCAGACGCCACACTGTCATCACCGTCGTCGTCATCGTCCCGCCAACGTTCTATTTAT
AGATGGAAACCTAGCTAGGAGAGCAGCACTAGCATTAGTAAGAGTGTAAGACAGAGTTCTTGAGGAGAGAGGGGCGGC--
-----GCTCACCGTTGATCGGATCGTCTCCATGTCGGGCGACTGGGGCCCGGTGCTGATCGCGACGGCCTTCTTCGTGGT
GATGCTGCCGGGGCTCATCTGCGAGATCCCCGGCGGCGGGGGGCGCGGCCGGCCCGAGTTCCACAGCATGAAGACCAACG
GCATCGCCATGTTCGTCCACACCGTCATCTTCTTCGCCTTCTGCGCCATCTTCATGGTCGCCGTCGGCGTCCACGTCTAC
GCCGGCTAGCCCTCCGGCGCCATACATTCTACCACAAGACCACCGGCTAGCT---------------------------A
TCGTGTGTGTTCCATGTTTGATTTTTTT-CTCTCTTTTTTTATCCATATATGCTCAGGATTGTCTGTCAGCTCATCAACC
TGTGATTTATTGAATGGTTGATTTGAGCCGTACCCCCAAAAAATACCAAAAAAAAAGTGCAATTCGGTATCACCAGTCAA
AGAGGGCTAAAATTGCTGAGTGGATTTCATCGACCCAAGAAAAAAAATCTAAGAAAAAAAC-G----------AGACCAG
ATTGGCATGTTCAAGTTTCACAGCTTTGATTT-AAAAAAAACTTTGATTTACATGC-AACAGACACATCACAACCAGCTT
TTGTTCCTTCTTCCTTGAGTGGAACCAACAGAGCTTCCACC--TCTCTACATAATTTAATCATGAGACAACAATTGCATA
ATTTGCATTGAGCTGCGCTGAATTCCCACAAAATTCAGCGCTACCACAAACATCCGGCAGGGAATCAATCACCGGTCGGT
CACCGGCGTCTTCGCAAATGGGGTTATTGCCTCCTGCTGCTGCTGCTGGAAGGAGAAGAGGCCATCTTTCCCTCGACGTA
CTGAGCGAATTTCACCCTTGGGCCCTGAATTCATTCAAAGACACAGTTGCTTAGTTAAACCGACTCCATCGAGTTCTCAT
GGCAAACCGTTGCGCAAGGTAGAGGGAGGCCACTCACAGGAATTTTGCAGTGAGAGTTGAGCTCAGCCAGCATCTGCTGC
CGGCGCTCCTTGGCCACCTCCTCTACCCGCAACGCCCTCTGGCAAGCTTCCATCTGCTCCTGCTGCATATTTAACAGAAA
TGTTTCTTCAGTACTGAGGTTTTTTTTTTTT-AAAAGGCAAATATATTGCAAGTCACAGTGATGCTACAGGCAGCTAAAA
TCTTCAAACAGGATTCTCATCCATGATGAGTTAACAGGCAAAATAAATTATAAGCTGAGAAAGGGCAGGCCAGATTACAG
GCATTGCACTCCCAGGTT-
>SNPs
---------------------S-----------------S------S---------------------------------
---S--S-SS----------------------------------------S---------------S-------------
-----------------S--------------------------------------------------S-----------
---------------------------------S---SS-----------------------------------------
-------------------------------------------------S------------------------------
-----S------------S-------S------------------------------------------------S----
-----------------------------S------------S-------------------------------------
S-------------------------------------------S---S---S---------------------------
------S---------------------------------------------------S---------------------
--------S-----S--------------------------------------------S-----------------S--
----------------------------S------------------------------------S--------------
--------------------------------------------------------------S--------S--------
----------S-------------------S----SSS-----------S------S---------SS--SS-SS--SSS
SSSSS-----------------SSSS------------------------------------------------------
---------------S--------------------------S---------------------------S---------
--------------------------------------------------------------------------------
--------SS-----S--S-SSS---S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------------SS------S----S---S-SSSS-------------------------------------
--------------------------------------------S-S-S----------------S---S----------
---------------S------S---------------------------S----SS----SSSSSSSSSSSS-------
--------------------------------S-----------------------------------------------
-------------------------------------------------------S----------------------S-
----------------------------------S----S----------------------------------------
--------------------S-----------------------------------------------------------
------------------------------S-------------S-----------------------------------
----------------------------------------------------------------S---------------
-------------------------------------------------------------------------------S
-----------------S-------SSS-S-S----SS----------------S-------------------------
------S---------S--------------S-----S-----------S--------------S----S---S------
------------------S
>forward_510
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----------GCTGACAAGTGAGCATGCAG--------------------------------------------------
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>reverse_1510
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---------------------------------------------------------------------GCACCAGTCAA
AGAGGGCTA-----------------------------------------------------------------------
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