Multiple sequence alignment - TraesCS3A01G082800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G082800 chr3A 100.000 4209 0 0 1 4209 53345703 53341495 0.000000e+00 7773.0
1 TraesCS3A01G082800 chr3D 97.169 1448 33 3 1116 2560 42341981 42343423 0.000000e+00 2440.0
2 TraesCS3A01G082800 chr3D 89.970 997 82 6 1 984 42340787 42341778 0.000000e+00 1271.0
3 TraesCS3A01G082800 chr3D 96.657 688 19 2 2846 3531 42343798 42344483 0.000000e+00 1140.0
4 TraesCS3A01G082800 chr3D 94.163 257 15 0 2561 2817 42343465 42343721 3.940000e-105 392.0
5 TraesCS3A01G082800 chr3D 89.076 238 15 2 3775 4007 42344482 42344713 6.890000e-73 285.0
6 TraesCS3A01G082800 chr3D 83.696 92 15 0 1257 1348 534165875 534165966 2.080000e-13 87.9
7 TraesCS3A01G082800 chr3D 90.000 60 4 2 3990 4048 70277719 70277777 4.510000e-10 76.8
8 TraesCS3A01G082800 chr3B 91.548 1479 82 27 2561 4006 65367599 65366131 0.000000e+00 1999.0
9 TraesCS3A01G082800 chr3B 96.252 747 15 7 1057 1800 65369381 65368645 0.000000e+00 1212.0
10 TraesCS3A01G082800 chr3B 87.526 481 57 3 1 480 65370814 65370336 1.710000e-153 553.0
11 TraesCS3A01G082800 chr3B 96.429 280 10 0 2281 2560 65367921 65367642 2.960000e-126 462.0
12 TraesCS3A01G082800 chr3B 92.419 277 8 3 779 1042 65369958 65369682 2.370000e-102 383.0
13 TraesCS3A01G082800 chr3B 86.282 277 28 7 1821 2094 65368591 65368322 4.120000e-75 292.0
14 TraesCS3A01G082800 chr3B 87.778 90 9 2 678 766 65370031 65369943 2.070000e-18 104.0
15 TraesCS3A01G082800 chr3B 83.544 79 10 3 3975 4051 672389209 672389286 2.100000e-08 71.3
16 TraesCS3A01G082800 chr6B 100.000 40 0 0 4012 4051 96671835 96671796 1.620000e-09 75.0
17 TraesCS3A01G082800 chr6B 94.000 50 2 1 4003 4051 597441288 597441239 1.620000e-09 75.0
18 TraesCS3A01G082800 chr6A 100.000 40 0 0 4012 4051 606977772 606977733 1.620000e-09 75.0
19 TraesCS3A01G082800 chr4D 92.308 52 3 1 4001 4051 490940143 490940092 5.840000e-09 73.1
20 TraesCS3A01G082800 chr1A 92.308 52 3 1 4001 4051 484329967 484330018 5.840000e-09 73.1
21 TraesCS3A01G082800 chr6D 90.741 54 3 2 4000 4051 382547314 382547367 2.100000e-08 71.3
22 TraesCS3A01G082800 chr2D 92.157 51 3 1 4002 4051 445894982 445894932 2.100000e-08 71.3
23 TraesCS3A01G082800 chr5A 85.714 63 6 3 3461 3523 216999959 216999900 3.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G082800 chr3A 53341495 53345703 4208 True 7773.0 7773 100.000000 1 4209 1 chr3A.!!$R1 4208
1 TraesCS3A01G082800 chr3D 42340787 42344713 3926 False 1105.6 2440 93.407000 1 4007 5 chr3D.!!$F3 4006
2 TraesCS3A01G082800 chr3B 65366131 65370814 4683 True 715.0 1999 91.176286 1 4006 7 chr3B.!!$R1 4005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 714 0.041926 GGCGACACCAAAACACGTAC 60.042 55.0 0.0 0.0 38.86 3.67 F
676 802 0.103390 TCAGGCGAACAAACGTCTCA 59.897 50.0 0.0 0.0 45.03 3.27 F
1072 1509 0.393132 GAAAGAGAAAGCGGGGGAGG 60.393 60.0 0.0 0.0 0.00 4.30 F
1761 2201 0.676736 CCGGATCTAGTCTTCCTGCC 59.323 60.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 2201 0.941463 AGCAATAGATTCGAGCGCGG 60.941 55.000 10.69 0.0 38.28 6.46 R
2402 3140 1.137675 TCATGTTCATCCTCCGCAGAG 59.862 52.381 0.00 0.0 40.09 3.35 R
2585 3365 1.326328 TGCTGCATTAAACAGTGGCA 58.674 45.000 0.00 0.0 37.47 4.92 R
3714 4555 0.321021 AGGCGCAAATGCATTTCCAA 59.679 45.000 21.70 0.0 42.21 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.260870 TGAAATTATCAAGCGGCAAAACTA 57.739 33.333 1.45 0.00 34.30 2.24
131 132 1.901159 CTGAATGCCCATTTGGTTCCA 59.099 47.619 0.00 0.00 36.04 3.53
133 134 2.911636 TGAATGCCCATTTGGTTCCAAT 59.088 40.909 5.06 0.00 36.04 3.16
136 137 3.971245 TGCCCATTTGGTTCCAATAAC 57.029 42.857 5.06 0.00 36.04 1.89
144 145 2.577700 TGGTTCCAATAACTTGTGCGT 58.422 42.857 0.00 0.00 0.00 5.24
161 163 2.031314 TGCGTCGGAATCTACGAGTTAG 59.969 50.000 11.59 0.00 41.50 2.34
255 257 8.748412 TCAACACCTTCCATCCTAATTATTTTG 58.252 33.333 0.00 0.00 0.00 2.44
274 276 4.919774 TTGACCCATCCTAAGTTAAGCA 57.080 40.909 0.00 0.00 0.00 3.91
275 277 4.919774 TGACCCATCCTAAGTTAAGCAA 57.080 40.909 0.00 0.00 0.00 3.91
290 292 3.022287 CAAGGCACGCAACGACTT 58.978 55.556 0.00 0.00 0.00 3.01
296 298 1.300620 CACGCAACGACTTCCCTGA 60.301 57.895 0.00 0.00 0.00 3.86
301 303 1.540363 GCAACGACTTCCCTGAACTCA 60.540 52.381 0.00 0.00 0.00 3.41
303 305 2.528041 ACGACTTCCCTGAACTCAAC 57.472 50.000 0.00 0.00 0.00 3.18
313 315 0.934496 TGAACTCAACGTTTCCTGCG 59.066 50.000 0.00 0.00 35.56 5.18
327 329 3.669036 CTGCGTGTCGTCTCCCTCG 62.669 68.421 0.00 0.00 0.00 4.63
336 338 0.106335 CGTCTCCCTCGTAGGCTAGA 59.894 60.000 0.00 0.00 32.73 2.43
385 387 4.056050 GCTTTTGAGGTAGAGAACACGAA 58.944 43.478 0.00 0.00 0.00 3.85
458 460 2.729491 GGCCACGCAAGCGAAAAC 60.729 61.111 22.30 7.16 42.83 2.43
461 463 1.657181 CCACGCAAGCGAAAACACC 60.657 57.895 22.30 0.00 42.83 4.16
485 487 2.753043 GACCGGTAGCGAGGGACA 60.753 66.667 17.33 0.00 0.00 4.02
497 499 1.260561 CGAGGGACAACGACAACAAAG 59.739 52.381 0.00 0.00 33.01 2.77
523 525 1.796982 CGGATCTCTCAGAGCAACACG 60.797 57.143 0.00 0.00 30.96 4.49
539 594 3.816697 CGTCTCTACGCGCATAGC 58.183 61.111 5.73 0.00 43.12 2.97
581 636 8.134202 TCTTGATTGAGTTATTCTACAGGTCA 57.866 34.615 0.00 0.00 0.00 4.02
620 714 0.041926 GGCGACACCAAAACACGTAC 60.042 55.000 0.00 0.00 38.86 3.67
631 726 1.754380 AACACGTACTGCAGCCCTCA 61.754 55.000 15.27 0.00 0.00 3.86
637 732 2.449031 TACTGCAGCCCTCACAACGG 62.449 60.000 15.27 0.00 0.00 4.44
648 743 2.009774 CTCACAACGGCCCATTTCTAG 58.990 52.381 0.00 0.00 0.00 2.43
662 757 5.278660 CCCATTTCTAGCAAACATATCAGGC 60.279 44.000 0.00 0.00 0.00 4.85
666 792 4.119862 TCTAGCAAACATATCAGGCGAAC 58.880 43.478 0.00 0.00 0.00 3.95
668 794 3.081061 AGCAAACATATCAGGCGAACAA 58.919 40.909 0.00 0.00 0.00 2.83
676 802 0.103390 TCAGGCGAACAAACGTCTCA 59.897 50.000 0.00 0.00 45.03 3.27
688 814 5.949735 ACAAACGTCTCAATTGAGTTGTTT 58.050 33.333 31.81 31.81 43.72 2.83
958 1108 2.044252 TCGTCTCTTCCTCCCCCG 60.044 66.667 0.00 0.00 0.00 5.73
1042 1193 1.066454 ACCAGAAAAACGCCGGAAAAG 59.934 47.619 5.05 0.00 0.00 2.27
1043 1194 1.335496 CCAGAAAAACGCCGGAAAAGA 59.665 47.619 5.05 0.00 0.00 2.52
1044 1195 2.223618 CCAGAAAAACGCCGGAAAAGAA 60.224 45.455 5.05 0.00 0.00 2.52
1045 1196 3.440228 CAGAAAAACGCCGGAAAAGAAA 58.560 40.909 5.05 0.00 0.00 2.52
1046 1197 3.860536 CAGAAAAACGCCGGAAAAGAAAA 59.139 39.130 5.05 0.00 0.00 2.29
1047 1198 4.026886 CAGAAAAACGCCGGAAAAGAAAAG 60.027 41.667 5.05 0.00 0.00 2.27
1048 1199 3.786516 AAAACGCCGGAAAAGAAAAGA 57.213 38.095 5.05 0.00 0.00 2.52
1049 1200 3.786516 AAACGCCGGAAAAGAAAAGAA 57.213 38.095 5.05 0.00 0.00 2.52
1050 1201 3.786516 AACGCCGGAAAAGAAAAGAAA 57.213 38.095 5.05 0.00 0.00 2.52
1051 1202 3.786516 ACGCCGGAAAAGAAAAGAAAA 57.213 38.095 5.05 0.00 0.00 2.29
1052 1203 4.112716 ACGCCGGAAAAGAAAAGAAAAA 57.887 36.364 5.05 0.00 0.00 1.94
1053 1204 4.109766 ACGCCGGAAAAGAAAAGAAAAAG 58.890 39.130 5.05 0.00 0.00 2.27
1054 1205 4.142337 ACGCCGGAAAAGAAAAGAAAAAGA 60.142 37.500 5.05 0.00 0.00 2.52
1055 1206 4.801516 CGCCGGAAAAGAAAAGAAAAAGAA 59.198 37.500 5.05 0.00 0.00 2.52
1070 1507 1.064825 AAGAAAGAGAAAGCGGGGGA 58.935 50.000 0.00 0.00 0.00 4.81
1071 1508 0.615850 AGAAAGAGAAAGCGGGGGAG 59.384 55.000 0.00 0.00 0.00 4.30
1072 1509 0.393132 GAAAGAGAAAGCGGGGGAGG 60.393 60.000 0.00 0.00 0.00 4.30
1073 1510 0.840722 AAAGAGAAAGCGGGGGAGGA 60.841 55.000 0.00 0.00 0.00 3.71
1761 2201 0.676736 CCGGATCTAGTCTTCCTGCC 59.323 60.000 0.00 0.00 0.00 4.85
1785 2225 2.726760 CGCTCGAATCTATTGCTACCAC 59.273 50.000 0.00 0.00 0.00 4.16
1843 2316 1.447314 ACGCGGAATTCGTCTTCCC 60.447 57.895 12.47 5.63 41.46 3.97
1868 2341 0.880718 GCGTTGATCCGATCCCCTTC 60.881 60.000 5.91 0.00 0.00 3.46
1869 2342 0.753262 CGTTGATCCGATCCCCTTCT 59.247 55.000 5.91 0.00 0.00 2.85
1901 2374 6.119144 TGAAACAAGTCTAGTCTTTTGTGC 57.881 37.500 0.00 0.00 34.28 4.57
1902 2375 5.880332 TGAAACAAGTCTAGTCTTTTGTGCT 59.120 36.000 0.00 0.00 34.28 4.40
1903 2376 7.045416 TGAAACAAGTCTAGTCTTTTGTGCTA 58.955 34.615 0.00 0.00 34.28 3.49
1912 2387 9.372369 GTCTAGTCTTTTGTGCTATCTGTTTAT 57.628 33.333 0.00 0.00 0.00 1.40
1957 2432 6.905076 TGATTCTTTCTTATGTTAATTCGCGC 59.095 34.615 0.00 0.00 0.00 6.86
2000 2475 0.860203 CAATGCGTCATGAAGCTGCG 60.860 55.000 29.44 15.41 36.75 5.18
2222 2816 2.224185 TGGCACTGGTACAACTGTAGTG 60.224 50.000 6.82 6.82 38.70 2.74
2402 3140 3.129287 CCAAGTACATGTCCATTTCTGGC 59.871 47.826 0.00 0.00 42.80 4.85
2585 3365 9.911788 ATTATGTGATTTCTGTCCATAGAACTT 57.088 29.630 0.00 0.00 36.48 2.66
2595 3375 3.821033 GTCCATAGAACTTGCCACTGTTT 59.179 43.478 0.00 0.00 0.00 2.83
2596 3376 5.001232 GTCCATAGAACTTGCCACTGTTTA 58.999 41.667 0.00 0.00 0.00 2.01
2610 3390 5.581874 GCCACTGTTTAATGCAGCATTTTAT 59.418 36.000 25.54 4.13 37.47 1.40
2611 3391 6.092533 GCCACTGTTTAATGCAGCATTTTATT 59.907 34.615 25.54 4.61 37.47 1.40
2614 3394 7.958567 CACTGTTTAATGCAGCATTTTATTTGG 59.041 33.333 25.54 12.22 37.47 3.28
2817 3597 3.216800 TGTGCTTTCTTCTGCAAGTCAT 58.783 40.909 0.00 0.00 41.10 3.06
2821 3601 6.654582 TGTGCTTTCTTCTGCAAGTCATTATA 59.345 34.615 0.00 0.00 41.10 0.98
2824 3604 7.337689 TGCTTTCTTCTGCAAGTCATTATATGT 59.662 33.333 0.00 0.00 36.15 2.29
2825 3605 7.854916 GCTTTCTTCTGCAAGTCATTATATGTC 59.145 37.037 0.00 0.00 33.76 3.06
2830 3610 5.753438 TCTGCAAGTCATTATATGTCGGAAC 59.247 40.000 0.00 0.00 33.76 3.62
2831 3611 5.423886 TGCAAGTCATTATATGTCGGAACA 58.576 37.500 0.00 0.00 40.38 3.18
2842 3622 3.965379 TGTCGGAACATGTTAGCCTTA 57.035 42.857 11.95 0.00 0.00 2.69
2843 3623 3.857052 TGTCGGAACATGTTAGCCTTAG 58.143 45.455 11.95 0.00 0.00 2.18
2844 3624 2.608090 GTCGGAACATGTTAGCCTTAGC 59.392 50.000 11.95 0.00 40.32 3.09
2876 3704 9.566432 AATGTCTATCTCTTCAGTTTTGTTTCT 57.434 29.630 0.00 0.00 0.00 2.52
2877 3705 8.594881 TGTCTATCTCTTCAGTTTTGTTTCTC 57.405 34.615 0.00 0.00 0.00 2.87
2906 3734 6.731919 TCCCTGTCTAAGTAGAAACCCAAATA 59.268 38.462 0.00 0.00 33.47 1.40
3103 3933 5.056480 CCGAATTGTGGAGCAACATCTATA 58.944 41.667 0.00 0.00 40.28 1.31
3112 3942 4.503991 GGAGCAACATCTATACCCAAGAGG 60.504 50.000 0.00 0.00 43.78 3.69
3113 3943 4.298626 AGCAACATCTATACCCAAGAGGA 58.701 43.478 0.00 0.00 39.89 3.71
3180 4010 3.842869 CTCCTGAAGCTGTGTACCC 57.157 57.895 0.00 0.00 0.00 3.69
3198 4029 4.409718 ACCCTTTTTGTATGGCGTTTTT 57.590 36.364 0.00 0.00 0.00 1.94
3311 4144 1.153588 CCATTGTTGGCCGGCATTC 60.154 57.895 30.85 17.36 35.85 2.67
3376 4210 2.336809 CTCGTAGGAGCGGGCATC 59.663 66.667 0.00 0.00 32.61 3.91
3390 4227 1.520342 GCATCTGCTCGGACAGTCC 60.520 63.158 9.92 9.92 38.84 3.85
3410 4247 2.033299 CCGAATGGAACCGATTCATTGG 59.967 50.000 0.00 0.00 36.46 3.16
3437 4277 0.988832 TGGTGTTGGGGTGAGGTATC 59.011 55.000 0.00 0.00 0.00 2.24
3482 4322 2.185387 GCCCCCTGTTCTTGTACTAGA 58.815 52.381 2.68 2.68 0.00 2.43
3551 4391 5.643379 TGCCAATAAGATTGTGAACCTTC 57.357 39.130 0.00 0.00 0.00 3.46
3560 4400 7.528996 AAGATTGTGAACCTTCATTCATCAA 57.471 32.000 0.00 0.00 40.60 2.57
3607 4448 4.473199 CTTCATCATCAAGCTGTGTTGTG 58.527 43.478 0.00 0.00 0.00 3.33
3618 4459 3.067180 AGCTGTGTTGTGGATTTGTTCTG 59.933 43.478 0.00 0.00 0.00 3.02
3619 4460 3.374745 CTGTGTTGTGGATTTGTTCTGC 58.625 45.455 0.00 0.00 0.00 4.26
3626 4467 3.450457 TGTGGATTTGTTCTGCCTGTTTT 59.550 39.130 0.00 0.00 0.00 2.43
3628 4469 3.703556 TGGATTTGTTCTGCCTGTTTTGA 59.296 39.130 0.00 0.00 0.00 2.69
3644 4485 4.782019 TTTTGATGGATCGAAACTTGGG 57.218 40.909 0.00 0.00 35.74 4.12
3729 4570 4.816786 AGTGTTTTGGAAATGCATTTGC 57.183 36.364 30.26 30.26 38.41 3.68
3731 4572 2.032204 TGTTTTGGAAATGCATTTGCGC 60.032 40.909 30.54 22.13 45.83 6.09
3732 4573 1.155042 TTTGGAAATGCATTTGCGCC 58.845 45.000 30.54 23.96 45.83 6.53
3733 4574 0.321021 TTGGAAATGCATTTGCGCCT 59.679 45.000 30.54 8.80 45.83 5.52
3735 4576 1.698714 GGAAATGCATTTGCGCCTGC 61.699 55.000 28.67 16.91 45.83 4.85
3795 4638 3.379240 TGTGTTTTGATTTCACATGGCG 58.621 40.909 0.00 0.00 37.20 5.69
3826 4669 1.133976 ACCACAAGAGCATATCCCTGC 60.134 52.381 0.00 0.00 42.62 4.85
3878 4721 6.886459 ACCATCATTTTTATAGCAGTGTCACT 59.114 34.615 0.00 0.00 0.00 3.41
3900 4748 6.148811 CACTATTCGTGCTTTCCCTCTTTTTA 59.851 38.462 0.00 0.00 36.72 1.52
3916 4769 8.988934 CCCTCTTTTTATTTAAGAAAAAGCCAC 58.011 33.333 24.23 0.00 46.45 5.01
3924 4777 2.052782 AGAAAAAGCCACCGTGACTT 57.947 45.000 0.00 0.00 0.00 3.01
3937 4790 4.267928 CACCGTGACTTGCTAGCTTTATAC 59.732 45.833 17.23 8.83 0.00 1.47
3938 4791 4.159879 ACCGTGACTTGCTAGCTTTATACT 59.840 41.667 17.23 0.00 0.00 2.12
4007 4860 7.540474 TCAAGACAAAGTAGGTGAACTATCT 57.460 36.000 0.00 0.00 33.43 1.98
4008 4861 7.603651 TCAAGACAAAGTAGGTGAACTATCTC 58.396 38.462 0.00 0.00 33.43 2.75
4009 4862 7.451877 TCAAGACAAAGTAGGTGAACTATCTCT 59.548 37.037 0.00 0.00 33.43 3.10
4010 4863 8.740906 CAAGACAAAGTAGGTGAACTATCTCTA 58.259 37.037 0.00 0.00 33.43 2.43
4011 4864 8.283699 AGACAAAGTAGGTGAACTATCTCTAC 57.716 38.462 0.00 0.00 35.36 2.59
4012 4865 7.066043 AGACAAAGTAGGTGAACTATCTCTACG 59.934 40.741 0.00 0.00 37.71 3.51
4013 4866 6.658391 ACAAAGTAGGTGAACTATCTCTACGT 59.342 38.462 0.00 0.00 37.71 3.57
4014 4867 6.923928 AAGTAGGTGAACTATCTCTACGTC 57.076 41.667 0.00 0.00 37.71 4.34
4015 4868 5.367302 AGTAGGTGAACTATCTCTACGTCC 58.633 45.833 0.00 0.00 37.71 4.79
4016 4869 3.553904 AGGTGAACTATCTCTACGTCCC 58.446 50.000 0.00 0.00 0.00 4.46
4017 4870 3.053842 AGGTGAACTATCTCTACGTCCCA 60.054 47.826 0.00 0.00 0.00 4.37
4018 4871 3.698040 GGTGAACTATCTCTACGTCCCAA 59.302 47.826 0.00 0.00 0.00 4.12
4019 4872 4.159135 GGTGAACTATCTCTACGTCCCAAA 59.841 45.833 0.00 0.00 0.00 3.28
4020 4873 5.337009 GGTGAACTATCTCTACGTCCCAAAA 60.337 44.000 0.00 0.00 0.00 2.44
4021 4874 6.338937 GTGAACTATCTCTACGTCCCAAAAT 58.661 40.000 0.00 0.00 0.00 1.82
4022 4875 7.417116 GGTGAACTATCTCTACGTCCCAAAATA 60.417 40.741 0.00 0.00 0.00 1.40
4023 4876 7.977853 GTGAACTATCTCTACGTCCCAAAATAA 59.022 37.037 0.00 0.00 0.00 1.40
4024 4877 8.195436 TGAACTATCTCTACGTCCCAAAATAAG 58.805 37.037 0.00 0.00 0.00 1.73
4025 4878 7.657023 ACTATCTCTACGTCCCAAAATAAGT 57.343 36.000 0.00 0.00 0.00 2.24
4026 4879 7.490000 ACTATCTCTACGTCCCAAAATAAGTG 58.510 38.462 0.00 0.00 0.00 3.16
4027 4880 5.733620 TCTCTACGTCCCAAAATAAGTGT 57.266 39.130 0.00 0.00 0.00 3.55
4028 4881 5.717119 TCTCTACGTCCCAAAATAAGTGTC 58.283 41.667 0.00 0.00 0.00 3.67
4029 4882 5.479375 TCTCTACGTCCCAAAATAAGTGTCT 59.521 40.000 0.00 0.00 0.00 3.41
4030 4883 5.717119 TCTACGTCCCAAAATAAGTGTCTC 58.283 41.667 0.00 0.00 0.00 3.36
4031 4884 4.345859 ACGTCCCAAAATAAGTGTCTCA 57.654 40.909 0.00 0.00 0.00 3.27
4032 4885 4.710324 ACGTCCCAAAATAAGTGTCTCAA 58.290 39.130 0.00 0.00 0.00 3.02
4033 4886 4.514066 ACGTCCCAAAATAAGTGTCTCAAC 59.486 41.667 0.00 0.00 0.00 3.18
4034 4887 4.083484 CGTCCCAAAATAAGTGTCTCAACC 60.083 45.833 0.00 0.00 0.00 3.77
4035 4888 5.070685 GTCCCAAAATAAGTGTCTCAACCT 58.929 41.667 0.00 0.00 0.00 3.50
4036 4889 5.535030 GTCCCAAAATAAGTGTCTCAACCTT 59.465 40.000 0.00 0.00 0.00 3.50
4037 4890 6.713450 GTCCCAAAATAAGTGTCTCAACCTTA 59.287 38.462 0.00 0.00 0.00 2.69
4038 4891 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
4039 4892 6.715264 CCCAAAATAAGTGTCTCAACCTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
4040 4893 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
4041 4894 9.449719 CCAAAATAAGTGTCTCAACCTTAGTAT 57.550 33.333 0.00 0.00 0.00 2.12
4048 4901 9.490379 AAGTGTCTCAACCTTAGTATAACTTTG 57.510 33.333 0.00 0.00 0.00 2.77
4049 4902 8.648693 AGTGTCTCAACCTTAGTATAACTTTGT 58.351 33.333 0.00 0.00 0.00 2.83
4050 4903 9.918630 GTGTCTCAACCTTAGTATAACTTTGTA 57.081 33.333 0.00 0.00 0.00 2.41
4054 4907 9.303537 CTCAACCTTAGTATAACTTTGTAGAGC 57.696 37.037 0.00 0.00 0.00 4.09
4055 4908 9.032624 TCAACCTTAGTATAACTTTGTAGAGCT 57.967 33.333 0.00 0.00 0.00 4.09
4058 4911 9.471702 ACCTTAGTATAACTTTGTAGAGCTACA 57.528 33.333 6.26 6.26 43.61 2.74
4068 4921 3.674997 TGTAGAGCTACAAAAGGCAAGG 58.325 45.455 7.83 0.00 42.49 3.61
4069 4922 3.326588 TGTAGAGCTACAAAAGGCAAGGA 59.673 43.478 7.83 0.00 42.49 3.36
4070 4923 3.508845 AGAGCTACAAAAGGCAAGGAA 57.491 42.857 0.00 0.00 0.00 3.36
4071 4924 3.832527 AGAGCTACAAAAGGCAAGGAAA 58.167 40.909 0.00 0.00 0.00 3.13
4072 4925 3.570125 AGAGCTACAAAAGGCAAGGAAAC 59.430 43.478 0.00 0.00 0.00 2.78
4073 4926 2.293399 AGCTACAAAAGGCAAGGAAACG 59.707 45.455 0.00 0.00 0.00 3.60
4074 4927 2.607038 GCTACAAAAGGCAAGGAAACGG 60.607 50.000 0.00 0.00 0.00 4.44
4075 4928 0.750249 ACAAAAGGCAAGGAAACGGG 59.250 50.000 0.00 0.00 0.00 5.28
4076 4929 0.033366 CAAAAGGCAAGGAAACGGGG 59.967 55.000 0.00 0.00 0.00 5.73
4077 4930 0.397957 AAAAGGCAAGGAAACGGGGT 60.398 50.000 0.00 0.00 0.00 4.95
4078 4931 1.112916 AAAGGCAAGGAAACGGGGTG 61.113 55.000 0.00 0.00 0.00 4.61
4079 4932 2.989253 GGCAAGGAAACGGGGTGG 60.989 66.667 0.00 0.00 0.00 4.61
4080 4933 2.203437 GCAAGGAAACGGGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
4081 4934 1.830847 GCAAGGAAACGGGGTGGTT 60.831 57.895 0.00 0.00 0.00 3.67
4082 4935 2.037871 CAAGGAAACGGGGTGGTTG 58.962 57.895 0.00 0.00 0.00 3.77
4083 4936 0.466555 CAAGGAAACGGGGTGGTTGA 60.467 55.000 0.00 0.00 0.00 3.18
4084 4937 0.481128 AAGGAAACGGGGTGGTTGAT 59.519 50.000 0.00 0.00 0.00 2.57
4085 4938 0.481128 AGGAAACGGGGTGGTTGATT 59.519 50.000 0.00 0.00 0.00 2.57
4086 4939 0.885879 GGAAACGGGGTGGTTGATTC 59.114 55.000 0.00 0.00 0.00 2.52
4087 4940 0.519961 GAAACGGGGTGGTTGATTCG 59.480 55.000 0.00 0.00 0.00 3.34
4088 4941 0.108963 AAACGGGGTGGTTGATTCGA 59.891 50.000 0.00 0.00 0.00 3.71
4089 4942 0.321298 AACGGGGTGGTTGATTCGAG 60.321 55.000 0.00 0.00 0.00 4.04
4090 4943 1.295423 CGGGGTGGTTGATTCGAGT 59.705 57.895 0.00 0.00 0.00 4.18
4091 4944 0.533491 CGGGGTGGTTGATTCGAGTA 59.467 55.000 0.00 0.00 0.00 2.59
4092 4945 1.470979 CGGGGTGGTTGATTCGAGTAG 60.471 57.143 0.00 0.00 0.00 2.57
4093 4946 1.134491 GGGGTGGTTGATTCGAGTAGG 60.134 57.143 0.00 0.00 0.00 3.18
4094 4947 1.829222 GGGTGGTTGATTCGAGTAGGA 59.171 52.381 0.00 0.00 0.00 2.94
4095 4948 2.235402 GGGTGGTTGATTCGAGTAGGAA 59.765 50.000 0.00 0.00 0.00 3.36
4096 4949 3.118371 GGGTGGTTGATTCGAGTAGGAAT 60.118 47.826 0.00 0.00 39.27 3.01
4097 4950 3.871594 GGTGGTTGATTCGAGTAGGAATG 59.128 47.826 0.00 0.00 36.79 2.67
4098 4951 4.382685 GGTGGTTGATTCGAGTAGGAATGA 60.383 45.833 0.00 0.00 36.79 2.57
4099 4952 5.360591 GTGGTTGATTCGAGTAGGAATGAT 58.639 41.667 0.00 0.00 36.79 2.45
4100 4953 5.463724 GTGGTTGATTCGAGTAGGAATGATC 59.536 44.000 0.00 0.00 36.79 2.92
4101 4954 4.681942 GGTTGATTCGAGTAGGAATGATCG 59.318 45.833 0.00 0.00 36.79 3.69
4102 4955 4.505313 TGATTCGAGTAGGAATGATCGG 57.495 45.455 0.00 0.00 36.79 4.18
4103 4956 4.142038 TGATTCGAGTAGGAATGATCGGA 58.858 43.478 0.00 0.00 36.79 4.55
4104 4957 4.583073 TGATTCGAGTAGGAATGATCGGAA 59.417 41.667 0.00 0.00 36.79 4.30
4105 4958 4.994907 TTCGAGTAGGAATGATCGGAAA 57.005 40.909 0.00 0.00 35.91 3.13
4106 4959 4.303086 TCGAGTAGGAATGATCGGAAAC 57.697 45.455 0.00 0.00 35.91 2.78
4107 4960 3.067742 TCGAGTAGGAATGATCGGAAACC 59.932 47.826 0.00 0.00 35.91 3.27
4108 4961 3.068307 CGAGTAGGAATGATCGGAAACCT 59.932 47.826 0.00 0.00 0.00 3.50
4109 4962 4.623002 GAGTAGGAATGATCGGAAACCTC 58.377 47.826 0.00 0.00 0.00 3.85
4110 4963 4.030913 AGTAGGAATGATCGGAAACCTCA 58.969 43.478 0.00 0.00 0.00 3.86
4111 4964 4.656112 AGTAGGAATGATCGGAAACCTCAT 59.344 41.667 0.00 0.00 32.30 2.90
4112 4965 3.813443 AGGAATGATCGGAAACCTCATG 58.187 45.455 0.00 0.00 31.61 3.07
4113 4966 3.200825 AGGAATGATCGGAAACCTCATGT 59.799 43.478 0.00 0.00 31.61 3.21
4114 4967 3.313526 GGAATGATCGGAAACCTCATGTG 59.686 47.826 0.00 0.00 31.61 3.21
4115 4968 2.401583 TGATCGGAAACCTCATGTGG 57.598 50.000 12.29 12.29 0.00 4.17
4116 4969 1.905894 TGATCGGAAACCTCATGTGGA 59.094 47.619 20.43 0.00 0.00 4.02
4117 4970 2.304470 TGATCGGAAACCTCATGTGGAA 59.696 45.455 20.43 0.00 0.00 3.53
4118 4971 3.054434 TGATCGGAAACCTCATGTGGAAT 60.054 43.478 20.43 8.16 0.00 3.01
4119 4972 3.433306 TCGGAAACCTCATGTGGAATT 57.567 42.857 20.43 13.70 0.00 2.17
4120 4973 3.081061 TCGGAAACCTCATGTGGAATTG 58.919 45.455 20.43 6.22 0.00 2.32
4121 4974 2.415893 CGGAAACCTCATGTGGAATTGC 60.416 50.000 20.43 16.51 0.00 3.56
4122 4975 2.562298 GGAAACCTCATGTGGAATTGCA 59.438 45.455 20.43 0.00 0.00 4.08
4123 4976 3.367703 GGAAACCTCATGTGGAATTGCAG 60.368 47.826 20.43 0.00 0.00 4.41
4124 4977 1.843368 ACCTCATGTGGAATTGCAGG 58.157 50.000 20.43 5.32 0.00 4.85
4125 4978 1.355381 ACCTCATGTGGAATTGCAGGA 59.645 47.619 20.43 0.00 0.00 3.86
4126 4979 1.747355 CCTCATGTGGAATTGCAGGAC 59.253 52.381 8.15 0.00 0.00 3.85
4127 4980 2.619849 CCTCATGTGGAATTGCAGGACT 60.620 50.000 8.15 0.00 0.00 3.85
4128 4981 2.422479 CTCATGTGGAATTGCAGGACTG 59.578 50.000 0.00 0.00 0.00 3.51
4129 4982 2.040145 TCATGTGGAATTGCAGGACTGA 59.960 45.455 0.00 0.00 0.00 3.41
4130 4983 2.189594 TGTGGAATTGCAGGACTGAG 57.810 50.000 0.00 0.00 0.00 3.35
4131 4984 1.699083 TGTGGAATTGCAGGACTGAGA 59.301 47.619 0.00 0.00 0.00 3.27
4132 4985 2.106338 TGTGGAATTGCAGGACTGAGAA 59.894 45.455 0.00 0.00 0.00 2.87
4133 4986 3.245016 TGTGGAATTGCAGGACTGAGAAT 60.245 43.478 0.00 0.00 0.00 2.40
4134 4987 3.376546 GTGGAATTGCAGGACTGAGAATC 59.623 47.826 0.00 0.00 0.00 2.52
4136 4989 3.376546 GGAATTGCAGGACTGAGAATCAC 59.623 47.826 3.00 0.22 42.56 3.06
4137 4990 2.479566 TTGCAGGACTGAGAATCACC 57.520 50.000 3.00 0.00 42.56 4.02
4138 4991 0.615331 TGCAGGACTGAGAATCACCC 59.385 55.000 3.00 0.00 42.56 4.61
4139 4992 0.460987 GCAGGACTGAGAATCACCCG 60.461 60.000 3.00 0.00 42.56 5.28
4140 4993 0.176680 CAGGACTGAGAATCACCCGG 59.823 60.000 0.00 0.00 42.56 5.73
4141 4994 0.252284 AGGACTGAGAATCACCCGGT 60.252 55.000 0.00 0.00 42.56 5.28
4142 4995 1.006758 AGGACTGAGAATCACCCGGTA 59.993 52.381 0.00 0.00 42.56 4.02
4143 4996 1.409427 GGACTGAGAATCACCCGGTAG 59.591 57.143 0.00 0.00 42.56 3.18
4144 4997 0.824759 ACTGAGAATCACCCGGTAGC 59.175 55.000 0.00 0.00 42.56 3.58
4145 4998 0.105039 CTGAGAATCACCCGGTAGCC 59.895 60.000 0.00 0.00 42.56 3.93
4146 4999 0.616395 TGAGAATCACCCGGTAGCCA 60.616 55.000 0.00 0.00 42.56 4.75
4147 5000 0.539986 GAGAATCACCCGGTAGCCAA 59.460 55.000 0.00 0.00 33.17 4.52
4148 5001 0.541863 AGAATCACCCGGTAGCCAAG 59.458 55.000 0.00 0.00 0.00 3.61
4149 5002 0.539986 GAATCACCCGGTAGCCAAGA 59.460 55.000 0.00 0.00 0.00 3.02
4150 5003 1.141053 GAATCACCCGGTAGCCAAGAT 59.859 52.381 0.00 0.00 0.00 2.40
4151 5004 0.759346 ATCACCCGGTAGCCAAGATC 59.241 55.000 0.00 0.00 0.00 2.75
4152 5005 0.616395 TCACCCGGTAGCCAAGATCA 60.616 55.000 0.00 0.00 0.00 2.92
4153 5006 0.179073 CACCCGGTAGCCAAGATCAG 60.179 60.000 0.00 0.00 0.00 2.90
4154 5007 1.227674 CCCGGTAGCCAAGATCAGC 60.228 63.158 0.00 0.00 0.00 4.26
4155 5008 1.592669 CCGGTAGCCAAGATCAGCG 60.593 63.158 0.00 0.00 0.00 5.18
4156 5009 1.437573 CGGTAGCCAAGATCAGCGA 59.562 57.895 0.00 0.00 34.01 4.93
4157 5010 0.032678 CGGTAGCCAAGATCAGCGAT 59.967 55.000 0.00 0.00 34.01 4.58
4158 5011 1.506493 GGTAGCCAAGATCAGCGATG 58.494 55.000 0.00 0.00 0.00 3.84
4159 5012 1.069204 GGTAGCCAAGATCAGCGATGA 59.931 52.381 5.53 5.53 0.00 2.92
4160 5013 2.402305 GTAGCCAAGATCAGCGATGAG 58.598 52.381 10.08 0.00 0.00 2.90
4161 5014 1.117994 AGCCAAGATCAGCGATGAGA 58.882 50.000 10.08 0.00 0.00 3.27
4162 5015 1.693062 AGCCAAGATCAGCGATGAGAT 59.307 47.619 10.08 0.00 0.00 2.75
4163 5016 2.067766 GCCAAGATCAGCGATGAGATC 58.932 52.381 10.08 2.43 40.68 2.75
4174 5027 1.863267 GATGAGATCGTTCCTGGCAG 58.137 55.000 7.75 7.75 0.00 4.85
4175 5028 1.137872 GATGAGATCGTTCCTGGCAGT 59.862 52.381 14.43 0.00 0.00 4.40
4176 5029 1.847328 TGAGATCGTTCCTGGCAGTA 58.153 50.000 14.43 0.00 0.00 2.74
4177 5030 1.476891 TGAGATCGTTCCTGGCAGTAC 59.523 52.381 14.43 10.09 0.00 2.73
4178 5031 1.751924 GAGATCGTTCCTGGCAGTACT 59.248 52.381 14.43 0.00 0.00 2.73
4179 5032 2.950309 GAGATCGTTCCTGGCAGTACTA 59.050 50.000 14.43 3.86 0.00 1.82
4180 5033 3.362706 AGATCGTTCCTGGCAGTACTAA 58.637 45.455 14.43 0.00 0.00 2.24
4181 5034 3.130693 AGATCGTTCCTGGCAGTACTAAC 59.869 47.826 14.43 10.74 0.00 2.34
4182 5035 2.522185 TCGTTCCTGGCAGTACTAACT 58.478 47.619 14.43 0.00 35.91 2.24
4183 5036 2.895404 TCGTTCCTGGCAGTACTAACTT 59.105 45.455 14.43 0.00 31.97 2.66
4184 5037 2.993899 CGTTCCTGGCAGTACTAACTTG 59.006 50.000 14.43 0.00 31.97 3.16
4185 5038 3.335579 GTTCCTGGCAGTACTAACTTGG 58.664 50.000 14.43 0.00 31.97 3.61
4186 5039 2.616524 TCCTGGCAGTACTAACTTGGT 58.383 47.619 14.43 0.00 31.97 3.67
4187 5040 2.565834 TCCTGGCAGTACTAACTTGGTC 59.434 50.000 14.43 0.00 31.97 4.02
4188 5041 2.301870 CCTGGCAGTACTAACTTGGTCA 59.698 50.000 14.43 0.00 31.97 4.02
4189 5042 3.326747 CTGGCAGTACTAACTTGGTCAC 58.673 50.000 6.28 0.00 31.97 3.67
4190 5043 2.701423 TGGCAGTACTAACTTGGTCACA 59.299 45.455 0.00 0.00 31.97 3.58
4191 5044 3.134985 TGGCAGTACTAACTTGGTCACAA 59.865 43.478 0.00 0.00 31.97 3.33
4192 5045 4.131596 GGCAGTACTAACTTGGTCACAAA 58.868 43.478 0.00 0.00 35.89 2.83
4193 5046 4.760204 GGCAGTACTAACTTGGTCACAAAT 59.240 41.667 0.00 0.00 35.89 2.32
4194 5047 5.334879 GGCAGTACTAACTTGGTCACAAATG 60.335 44.000 0.00 0.00 35.89 2.32
4195 5048 5.238650 GCAGTACTAACTTGGTCACAAATGT 59.761 40.000 0.00 0.00 35.89 2.71
4196 5049 6.658831 CAGTACTAACTTGGTCACAAATGTG 58.341 40.000 7.22 7.22 39.66 3.21
4197 5050 4.568152 ACTAACTTGGTCACAAATGTGC 57.432 40.909 8.67 4.39 45.25 4.57
4198 5051 2.490328 AACTTGGTCACAAATGTGCG 57.510 45.000 8.67 0.00 45.25 5.34
4199 5052 0.030638 ACTTGGTCACAAATGTGCGC 59.969 50.000 8.67 0.00 45.25 6.09
4200 5053 0.030504 CTTGGTCACAAATGTGCGCA 59.969 50.000 5.66 5.66 45.25 6.09
4201 5054 0.248825 TTGGTCACAAATGTGCGCAC 60.249 50.000 33.11 33.11 45.25 5.34
4202 5055 1.100463 TGGTCACAAATGTGCGCACT 61.100 50.000 37.59 22.19 45.25 4.40
4203 5056 0.661187 GGTCACAAATGTGCGCACTG 60.661 55.000 37.59 29.57 45.25 3.66
4204 5057 0.661187 GTCACAAATGTGCGCACTGG 60.661 55.000 37.59 25.62 45.25 4.00
4205 5058 0.817229 TCACAAATGTGCGCACTGGA 60.817 50.000 37.59 23.02 45.25 3.86
4206 5059 0.030504 CACAAATGTGCGCACTGGAA 59.969 50.000 37.59 20.80 39.39 3.53
4207 5060 0.030638 ACAAATGTGCGCACTGGAAC 59.969 50.000 37.59 14.25 0.00 3.62
4208 5061 0.311790 CAAATGTGCGCACTGGAACT 59.688 50.000 37.59 15.70 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.772250 TCAATTCATTAGGAGGAGATTGTACTT 58.228 33.333 0.00 0.00 0.00 2.24
90 91 8.715191 TTCAGATTTATTGTTTGTGTTGCTTT 57.285 26.923 0.00 0.00 0.00 3.51
131 132 3.596214 AGATTCCGACGCACAAGTTATT 58.404 40.909 0.00 0.00 0.00 1.40
133 134 2.736144 AGATTCCGACGCACAAGTTA 57.264 45.000 0.00 0.00 0.00 2.24
136 137 0.914551 CGTAGATTCCGACGCACAAG 59.085 55.000 0.00 0.00 34.88 3.16
144 145 6.519382 TGATAGACTAACTCGTAGATTCCGA 58.481 40.000 0.00 0.00 33.89 4.55
255 257 4.200092 CCTTGCTTAACTTAGGATGGGTC 58.800 47.826 0.00 0.00 30.27 4.46
274 276 2.251642 GGAAGTCGTTGCGTGCCTT 61.252 57.895 0.00 0.00 0.00 4.35
275 277 2.665185 GGAAGTCGTTGCGTGCCT 60.665 61.111 0.00 0.00 0.00 4.75
290 292 1.766496 AGGAAACGTTGAGTTCAGGGA 59.234 47.619 0.00 0.00 43.37 4.20
296 298 0.655733 CACGCAGGAAACGTTGAGTT 59.344 50.000 0.00 0.00 46.76 3.01
301 303 1.485032 GACGACACGCAGGAAACGTT 61.485 55.000 0.00 0.00 42.96 3.99
303 305 1.606350 GAGACGACACGCAGGAAACG 61.606 60.000 0.00 0.00 0.00 3.60
313 315 1.991099 GCCTACGAGGGAGACGACAC 61.991 65.000 0.00 0.00 35.37 3.67
327 329 1.324383 GACTCCTGCCTCTAGCCTAC 58.676 60.000 0.00 0.00 42.71 3.18
360 362 5.047590 TCGTGTTCTCTACCTCAAAAGCATA 60.048 40.000 0.00 0.00 0.00 3.14
399 401 0.601311 GTGCCGGCTCCACATATCTC 60.601 60.000 29.70 0.00 33.50 2.75
449 451 0.655733 CAGTGACGGTGTTTTCGCTT 59.344 50.000 0.00 0.00 29.97 4.68
461 463 2.202440 CGCTACCGGTCAGTGACG 60.202 66.667 12.40 11.81 32.65 4.35
485 487 0.025770 CGACGTGCTTTGTTGTCGTT 59.974 50.000 0.00 0.00 46.56 3.85
497 499 0.028770 CTCTGAGAGATCCGACGTGC 59.971 60.000 2.60 0.00 0.00 5.34
523 525 1.124462 CTTGCTATGCGCGTAGAGAC 58.876 55.000 35.03 20.17 43.27 3.36
532 534 9.091784 AGATATATGTTCATTACTTGCTATGCG 57.908 33.333 0.00 0.00 0.00 4.73
555 610 8.762645 TGACCTGTAGAATAACTCAATCAAGAT 58.237 33.333 0.00 0.00 0.00 2.40
561 616 5.396884 GGCCTGACCTGTAGAATAACTCAAT 60.397 44.000 0.00 0.00 34.51 2.57
570 625 0.541063 TCGTGGCCTGACCTGTAGAA 60.541 55.000 3.32 0.00 40.22 2.10
576 631 2.982130 GTCATCGTGGCCTGACCT 59.018 61.111 10.97 0.00 40.22 3.85
580 635 2.815211 CACCGTCATCGTGGCCTG 60.815 66.667 3.32 0.00 35.01 4.85
581 636 4.082523 CCACCGTCATCGTGGCCT 62.083 66.667 3.32 0.00 33.98 5.19
608 702 0.040425 GGCTGCAGTACGTGTTTTGG 60.040 55.000 16.64 0.00 0.00 3.28
617 711 1.291877 CGTTGTGAGGGCTGCAGTAC 61.292 60.000 16.64 8.81 0.00 2.73
620 714 3.052082 CCGTTGTGAGGGCTGCAG 61.052 66.667 10.11 10.11 0.00 4.41
631 726 0.037590 TGCTAGAAATGGGCCGTTGT 59.962 50.000 12.68 5.29 0.00 3.32
637 732 5.278660 CCTGATATGTTTGCTAGAAATGGGC 60.279 44.000 0.00 0.00 0.00 5.36
648 743 3.485947 TTGTTCGCCTGATATGTTTGC 57.514 42.857 0.00 0.00 0.00 3.68
662 757 4.452890 ACTCAATTGAGACGTTTGTTCG 57.547 40.909 36.15 11.27 44.74 3.95
666 792 6.237542 CCAAAACAACTCAATTGAGACGTTTG 60.238 38.462 34.32 31.11 44.74 2.93
668 794 5.124776 TCCAAAACAACTCAATTGAGACGTT 59.875 36.000 36.15 30.78 44.74 3.99
701 827 9.173021 CCAAAAATGTTAGGTTCCTTTCTTTTT 57.827 29.630 0.00 5.56 0.00 1.94
703 829 7.857456 ACCAAAAATGTTAGGTTCCTTTCTTT 58.143 30.769 0.00 0.00 0.00 2.52
798 925 4.792068 TGAATGGGATGGATGGACTTAAC 58.208 43.478 0.00 0.00 0.00 2.01
800 927 5.668135 AATGAATGGGATGGATGGACTTA 57.332 39.130 0.00 0.00 0.00 2.24
807 934 7.842743 CCCTATAATGAAATGAATGGGATGGAT 59.157 37.037 0.00 0.00 34.34 3.41
1042 1193 6.199154 CCCGCTTTCTCTTTCTTTTTCTTTTC 59.801 38.462 0.00 0.00 0.00 2.29
1043 1194 6.042777 CCCGCTTTCTCTTTCTTTTTCTTTT 58.957 36.000 0.00 0.00 0.00 2.27
1044 1195 5.451937 CCCCGCTTTCTCTTTCTTTTTCTTT 60.452 40.000 0.00 0.00 0.00 2.52
1045 1196 4.038042 CCCCGCTTTCTCTTTCTTTTTCTT 59.962 41.667 0.00 0.00 0.00 2.52
1046 1197 3.570125 CCCCGCTTTCTCTTTCTTTTTCT 59.430 43.478 0.00 0.00 0.00 2.52
1047 1198 3.305403 CCCCCGCTTTCTCTTTCTTTTTC 60.305 47.826 0.00 0.00 0.00 2.29
1048 1199 2.628178 CCCCCGCTTTCTCTTTCTTTTT 59.372 45.455 0.00 0.00 0.00 1.94
1049 1200 2.158519 TCCCCCGCTTTCTCTTTCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
1050 1201 1.423921 TCCCCCGCTTTCTCTTTCTTT 59.576 47.619 0.00 0.00 0.00 2.52
1051 1202 1.003696 CTCCCCCGCTTTCTCTTTCTT 59.996 52.381 0.00 0.00 0.00 2.52
1052 1203 0.615850 CTCCCCCGCTTTCTCTTTCT 59.384 55.000 0.00 0.00 0.00 2.52
1053 1204 0.393132 CCTCCCCCGCTTTCTCTTTC 60.393 60.000 0.00 0.00 0.00 2.62
1054 1205 0.840722 TCCTCCCCCGCTTTCTCTTT 60.841 55.000 0.00 0.00 0.00 2.52
1055 1206 1.229529 TCCTCCCCCGCTTTCTCTT 60.230 57.895 0.00 0.00 0.00 2.85
1070 1507 0.968393 GGCTTGTCGTCTCCTCTCCT 60.968 60.000 0.00 0.00 0.00 3.69
1071 1508 1.513622 GGCTTGTCGTCTCCTCTCC 59.486 63.158 0.00 0.00 0.00 3.71
1072 1509 1.513622 GGGCTTGTCGTCTCCTCTC 59.486 63.158 0.00 0.00 0.00 3.20
1073 1510 2.344203 CGGGCTTGTCGTCTCCTCT 61.344 63.158 0.00 0.00 0.00 3.69
1761 2201 0.941463 AGCAATAGATTCGAGCGCGG 60.941 55.000 10.69 0.00 38.28 6.46
1785 2225 2.186076 GTCTTTAGATCCAGACACGCG 58.814 52.381 3.53 3.53 39.49 6.01
1868 2341 6.153067 ACTAGACTTGTTTCATTCGACAGAG 58.847 40.000 0.00 0.00 0.00 3.35
1869 2342 6.016192 AGACTAGACTTGTTTCATTCGACAGA 60.016 38.462 0.00 0.00 0.00 3.41
1901 2374 9.477484 ACGCAAGGTCTAAATATAAACAGATAG 57.523 33.333 0.00 0.00 46.39 2.08
1902 2375 9.826574 AACGCAAGGTCTAAATATAAACAGATA 57.173 29.630 0.00 0.00 46.39 1.98
1903 2376 8.732746 AACGCAAGGTCTAAATATAAACAGAT 57.267 30.769 0.00 0.00 46.39 2.90
1912 2387 7.606456 AGAATCAAGAAACGCAAGGTCTAAATA 59.394 33.333 0.00 0.00 46.39 1.40
1957 2432 6.203145 TGAAATTGCATCAATTGGTGTTCTTG 59.797 34.615 19.61 0.00 42.32 3.02
2000 2475 1.293924 CACCATGTGAGGCGATTCTC 58.706 55.000 0.00 0.00 35.23 2.87
2215 2696 8.858186 CGATATTCTAATTGAGATGCACTACAG 58.142 37.037 0.00 0.00 32.88 2.74
2222 2816 8.526218 TCAACTCGATATTCTAATTGAGATGC 57.474 34.615 7.86 0.00 38.84 3.91
2327 3065 6.905736 ACATCTCTCCTTGTAGATAGTCTCA 58.094 40.000 0.00 0.00 31.25 3.27
2402 3140 1.137675 TCATGTTCATCCTCCGCAGAG 59.862 52.381 0.00 0.00 40.09 3.35
2585 3365 1.326328 TGCTGCATTAAACAGTGGCA 58.674 45.000 0.00 0.00 37.47 4.92
2595 3375 7.707464 CAGATCACCAAATAAAATGCTGCATTA 59.293 33.333 26.48 13.72 32.43 1.90
2596 3376 6.537301 CAGATCACCAAATAAAATGCTGCATT 59.463 34.615 21.48 21.48 35.39 3.56
2610 3390 8.827832 ATAAAAGATCCAATCAGATCACCAAA 57.172 30.769 0.00 0.00 44.32 3.28
2611 3391 8.827832 AATAAAAGATCCAATCAGATCACCAA 57.172 30.769 0.00 0.00 44.32 3.67
2614 3394 9.512435 CACAAATAAAAGATCCAATCAGATCAC 57.488 33.333 0.00 0.00 44.32 3.06
2817 3597 6.169557 AGGCTAACATGTTCCGACATATAA 57.830 37.500 15.85 0.00 44.55 0.98
2821 3601 5.216363 GCTAAGGCTAACATGTTCCGACAT 61.216 45.833 15.85 5.52 40.14 3.06
2824 3604 2.901249 GCTAAGGCTAACATGTTCCGA 58.099 47.619 15.85 4.32 35.22 4.55
2842 3622 8.305046 ACTGAAGAGATAGACATTCTTTAGCT 57.695 34.615 0.00 0.00 37.80 3.32
2843 3623 8.940768 AACTGAAGAGATAGACATTCTTTAGC 57.059 34.615 5.49 0.00 37.80 3.09
2851 3679 9.213799 GAGAAACAAAACTGAAGAGATAGACAT 57.786 33.333 0.00 0.00 0.00 3.06
2876 3704 5.279156 GGTTTCTACTTAGACAGGGAAACGA 60.279 44.000 0.00 0.00 43.19 3.85
2877 3705 4.928020 GGTTTCTACTTAGACAGGGAAACG 59.072 45.833 0.00 0.00 43.19 3.60
3103 3933 3.135279 TCTATCCTCTCTCCTCTTGGGT 58.865 50.000 0.00 0.00 36.25 4.51
3112 3942 8.103305 AGTTAGACAGATCATCTATCCTCTCTC 58.897 40.741 7.37 0.00 34.90 3.20
3113 3943 7.884877 CAGTTAGACAGATCATCTATCCTCTCT 59.115 40.741 7.37 0.00 34.90 3.10
3198 4029 5.049336 CCATACCACGAACATACAACAACAA 60.049 40.000 0.00 0.00 0.00 2.83
3311 4144 6.015180 TCCCTCACAAAAAGAATCAAATGGAG 60.015 38.462 0.00 0.00 0.00 3.86
3390 4227 2.942376 TCCAATGAATCGGTTCCATTCG 59.058 45.455 5.84 0.00 33.57 3.34
3437 4277 1.556911 TGGGAAAGCTGGCTAGAAGAG 59.443 52.381 0.00 0.00 0.00 2.85
3551 4391 6.738832 ATTCAGTCACACTCTTGATGAATG 57.261 37.500 0.00 0.00 39.24 2.67
3560 4400 3.813443 ACTGCAAATTCAGTCACACTCT 58.187 40.909 0.00 0.00 43.28 3.24
3607 4448 4.320608 TCAAAACAGGCAGAACAAATCC 57.679 40.909 0.00 0.00 0.00 3.01
3618 4459 3.191371 AGTTTCGATCCATCAAAACAGGC 59.809 43.478 6.02 0.00 36.44 4.85
3619 4460 5.156355 CAAGTTTCGATCCATCAAAACAGG 58.844 41.667 6.02 0.00 36.44 4.00
3626 4467 3.370103 GGTACCCAAGTTTCGATCCATCA 60.370 47.826 0.00 0.00 0.00 3.07
3628 4469 2.574369 TGGTACCCAAGTTTCGATCCAT 59.426 45.455 10.07 0.00 0.00 3.41
3644 4485 6.035327 GCAAAAGCATCAATCAAGAATGGTAC 59.965 38.462 0.00 0.00 0.00 3.34
3709 4550 3.543670 CGCAAATGCATTTCCAAAACAC 58.456 40.909 21.70 3.87 42.21 3.32
3710 4551 2.032204 GCGCAAATGCATTTCCAAAACA 60.032 40.909 21.70 0.00 42.21 2.83
3711 4552 2.573282 GCGCAAATGCATTTCCAAAAC 58.427 42.857 21.70 6.71 42.21 2.43
3713 4554 1.155042 GGCGCAAATGCATTTCCAAA 58.845 45.000 21.70 0.00 42.21 3.28
3714 4555 0.321021 AGGCGCAAATGCATTTCCAA 59.679 45.000 21.70 0.00 42.21 3.53
3717 4558 1.711500 GCAGGCGCAAATGCATTTC 59.289 52.632 21.70 14.78 42.11 2.17
3732 4573 1.993653 TCCCTCCTGGATTGTGCAG 59.006 57.895 0.00 0.00 38.61 4.41
3733 4574 4.248908 TCCCTCCTGGATTGTGCA 57.751 55.556 0.00 0.00 38.61 4.57
3741 4582 3.739401 ACCTTTAACAATCCCTCCTGG 57.261 47.619 0.00 0.00 0.00 4.45
3742 4583 4.218417 CACAACCTTTAACAATCCCTCCTG 59.782 45.833 0.00 0.00 0.00 3.86
3743 4584 4.105697 TCACAACCTTTAACAATCCCTCCT 59.894 41.667 0.00 0.00 0.00 3.69
3744 4585 4.403734 TCACAACCTTTAACAATCCCTCC 58.596 43.478 0.00 0.00 0.00 4.30
3745 4586 5.535030 AGTTCACAACCTTTAACAATCCCTC 59.465 40.000 0.00 0.00 0.00 4.30
3746 4587 5.454966 AGTTCACAACCTTTAACAATCCCT 58.545 37.500 0.00 0.00 0.00 4.20
3747 4588 5.784578 AGTTCACAACCTTTAACAATCCC 57.215 39.130 0.00 0.00 0.00 3.85
3774 4617 3.379240 CGCCATGTGAAATCAAAACACA 58.621 40.909 0.00 0.00 46.04 3.72
3795 4638 3.694072 TGCTCTTGTGGTTGCAATATACC 59.306 43.478 0.59 0.00 32.12 2.73
3826 4669 3.386486 TCTACAACGTGCAAACTGGTAG 58.614 45.455 0.00 0.00 0.00 3.18
3829 4672 2.210116 ACTCTACAACGTGCAAACTGG 58.790 47.619 0.00 0.00 0.00 4.00
3878 4721 7.696992 AATAAAAAGAGGGAAAGCACGAATA 57.303 32.000 0.00 0.00 0.00 1.75
3900 4748 4.583073 AGTCACGGTGGCTTTTTCTTAAAT 59.417 37.500 9.93 0.00 0.00 1.40
3916 4769 4.683832 AGTATAAAGCTAGCAAGTCACGG 58.316 43.478 18.83 0.00 0.00 4.94
3986 4839 7.066043 CGTAGAGATAGTTCACCTACTTTGTCT 59.934 40.741 0.00 0.00 35.20 3.41
4000 4853 7.980099 CACTTATTTTGGGACGTAGAGATAGTT 59.020 37.037 0.00 0.00 0.00 2.24
4002 4855 7.490000 ACACTTATTTTGGGACGTAGAGATAG 58.510 38.462 0.00 0.00 0.00 2.08
4007 4860 5.244402 TGAGACACTTATTTTGGGACGTAGA 59.756 40.000 0.00 0.00 0.00 2.59
4008 4861 5.475719 TGAGACACTTATTTTGGGACGTAG 58.524 41.667 0.00 0.00 0.00 3.51
4009 4862 5.471556 TGAGACACTTATTTTGGGACGTA 57.528 39.130 0.00 0.00 0.00 3.57
4010 4863 4.345859 TGAGACACTTATTTTGGGACGT 57.654 40.909 0.00 0.00 0.00 4.34
4011 4864 4.083484 GGTTGAGACACTTATTTTGGGACG 60.083 45.833 0.00 0.00 0.00 4.79
4012 4865 5.070685 AGGTTGAGACACTTATTTTGGGAC 58.929 41.667 0.00 0.00 0.00 4.46
4013 4866 5.319043 AGGTTGAGACACTTATTTTGGGA 57.681 39.130 0.00 0.00 0.00 4.37
4014 4867 6.715264 ACTAAGGTTGAGACACTTATTTTGGG 59.285 38.462 0.00 0.00 0.00 4.12
4015 4868 7.745620 ACTAAGGTTGAGACACTTATTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
4022 4875 9.490379 CAAAGTTATACTAAGGTTGAGACACTT 57.510 33.333 0.00 0.00 0.00 3.16
4023 4876 8.648693 ACAAAGTTATACTAAGGTTGAGACACT 58.351 33.333 0.00 0.00 0.00 3.55
4024 4877 8.828688 ACAAAGTTATACTAAGGTTGAGACAC 57.171 34.615 0.00 0.00 0.00 3.67
4028 4881 9.303537 GCTCTACAAAGTTATACTAAGGTTGAG 57.696 37.037 0.00 0.00 33.41 3.02
4029 4882 9.032624 AGCTCTACAAAGTTATACTAAGGTTGA 57.967 33.333 0.00 0.00 0.00 3.18
4032 4885 9.471702 TGTAGCTCTACAAAGTTATACTAAGGT 57.528 33.333 7.24 0.00 42.49 3.50
4047 4900 3.326588 TCCTTGCCTTTTGTAGCTCTACA 59.673 43.478 5.69 5.69 43.61 2.74
4048 4901 3.939066 TCCTTGCCTTTTGTAGCTCTAC 58.061 45.455 0.00 0.27 36.63 2.59
4049 4902 4.634012 TTCCTTGCCTTTTGTAGCTCTA 57.366 40.909 0.00 0.00 0.00 2.43
4050 4903 3.508845 TTCCTTGCCTTTTGTAGCTCT 57.491 42.857 0.00 0.00 0.00 4.09
4051 4904 3.609409 CGTTTCCTTGCCTTTTGTAGCTC 60.609 47.826 0.00 0.00 0.00 4.09
4052 4905 2.293399 CGTTTCCTTGCCTTTTGTAGCT 59.707 45.455 0.00 0.00 0.00 3.32
4053 4906 2.607038 CCGTTTCCTTGCCTTTTGTAGC 60.607 50.000 0.00 0.00 0.00 3.58
4054 4907 2.030274 CCCGTTTCCTTGCCTTTTGTAG 60.030 50.000 0.00 0.00 0.00 2.74
4055 4908 1.957877 CCCGTTTCCTTGCCTTTTGTA 59.042 47.619 0.00 0.00 0.00 2.41
4056 4909 0.750249 CCCGTTTCCTTGCCTTTTGT 59.250 50.000 0.00 0.00 0.00 2.83
4057 4910 0.033366 CCCCGTTTCCTTGCCTTTTG 59.967 55.000 0.00 0.00 0.00 2.44
4058 4911 0.397957 ACCCCGTTTCCTTGCCTTTT 60.398 50.000 0.00 0.00 0.00 2.27
4059 4912 1.112916 CACCCCGTTTCCTTGCCTTT 61.113 55.000 0.00 0.00 0.00 3.11
4060 4913 1.530655 CACCCCGTTTCCTTGCCTT 60.531 57.895 0.00 0.00 0.00 4.35
4061 4914 2.115266 CACCCCGTTTCCTTGCCT 59.885 61.111 0.00 0.00 0.00 4.75
4062 4915 2.989253 CCACCCCGTTTCCTTGCC 60.989 66.667 0.00 0.00 0.00 4.52
4063 4916 1.830847 AACCACCCCGTTTCCTTGC 60.831 57.895 0.00 0.00 0.00 4.01
4064 4917 0.466555 TCAACCACCCCGTTTCCTTG 60.467 55.000 0.00 0.00 0.00 3.61
4065 4918 0.481128 ATCAACCACCCCGTTTCCTT 59.519 50.000 0.00 0.00 0.00 3.36
4066 4919 0.481128 AATCAACCACCCCGTTTCCT 59.519 50.000 0.00 0.00 0.00 3.36
4067 4920 0.885879 GAATCAACCACCCCGTTTCC 59.114 55.000 0.00 0.00 0.00 3.13
4068 4921 0.519961 CGAATCAACCACCCCGTTTC 59.480 55.000 0.00 0.00 0.00 2.78
4069 4922 0.108963 TCGAATCAACCACCCCGTTT 59.891 50.000 0.00 0.00 0.00 3.60
4070 4923 0.321298 CTCGAATCAACCACCCCGTT 60.321 55.000 0.00 0.00 0.00 4.44
4071 4924 1.295423 CTCGAATCAACCACCCCGT 59.705 57.895 0.00 0.00 0.00 5.28
4072 4925 0.533491 TACTCGAATCAACCACCCCG 59.467 55.000 0.00 0.00 0.00 5.73
4073 4926 1.134491 CCTACTCGAATCAACCACCCC 60.134 57.143 0.00 0.00 0.00 4.95
4074 4927 1.829222 TCCTACTCGAATCAACCACCC 59.171 52.381 0.00 0.00 0.00 4.61
4075 4928 3.604875 TTCCTACTCGAATCAACCACC 57.395 47.619 0.00 0.00 0.00 4.61
4076 4929 4.755411 TCATTCCTACTCGAATCAACCAC 58.245 43.478 0.00 0.00 29.85 4.16
4077 4930 5.601662 GATCATTCCTACTCGAATCAACCA 58.398 41.667 0.00 0.00 29.85 3.67
4078 4931 4.681942 CGATCATTCCTACTCGAATCAACC 59.318 45.833 0.00 0.00 33.07 3.77
4079 4932 4.681942 CCGATCATTCCTACTCGAATCAAC 59.318 45.833 0.00 0.00 33.07 3.18
4080 4933 4.583073 TCCGATCATTCCTACTCGAATCAA 59.417 41.667 0.00 0.00 33.07 2.57
4081 4934 4.142038 TCCGATCATTCCTACTCGAATCA 58.858 43.478 0.00 0.00 33.07 2.57
4082 4935 4.768130 TCCGATCATTCCTACTCGAATC 57.232 45.455 0.00 0.00 33.07 2.52
4083 4936 5.290386 GTTTCCGATCATTCCTACTCGAAT 58.710 41.667 0.00 0.00 33.07 3.34
4084 4937 4.441079 GGTTTCCGATCATTCCTACTCGAA 60.441 45.833 0.00 0.00 33.07 3.71
4085 4938 3.067742 GGTTTCCGATCATTCCTACTCGA 59.932 47.826 0.00 0.00 33.07 4.04
4086 4939 3.068307 AGGTTTCCGATCATTCCTACTCG 59.932 47.826 0.00 0.00 0.00 4.18
4087 4940 4.099573 TGAGGTTTCCGATCATTCCTACTC 59.900 45.833 0.00 0.00 0.00 2.59
4088 4941 4.030913 TGAGGTTTCCGATCATTCCTACT 58.969 43.478 0.00 0.00 0.00 2.57
4089 4942 4.402056 TGAGGTTTCCGATCATTCCTAC 57.598 45.455 0.00 0.00 0.00 3.18
4090 4943 4.408921 ACATGAGGTTTCCGATCATTCCTA 59.591 41.667 0.00 0.00 31.38 2.94
4091 4944 3.200825 ACATGAGGTTTCCGATCATTCCT 59.799 43.478 0.00 0.00 31.38 3.36
4092 4945 3.313526 CACATGAGGTTTCCGATCATTCC 59.686 47.826 0.00 0.00 31.38 3.01
4093 4946 3.313526 CCACATGAGGTTTCCGATCATTC 59.686 47.826 0.00 0.00 31.38 2.67
4094 4947 3.054434 TCCACATGAGGTTTCCGATCATT 60.054 43.478 9.16 0.00 31.38 2.57
4095 4948 2.505407 TCCACATGAGGTTTCCGATCAT 59.495 45.455 9.16 0.00 34.02 2.45
4096 4949 1.905894 TCCACATGAGGTTTCCGATCA 59.094 47.619 9.16 0.00 0.00 2.92
4097 4950 2.691409 TCCACATGAGGTTTCCGATC 57.309 50.000 9.16 0.00 0.00 3.69
4098 4951 3.652057 ATTCCACATGAGGTTTCCGAT 57.348 42.857 9.16 0.00 0.00 4.18
4099 4952 3.081061 CAATTCCACATGAGGTTTCCGA 58.919 45.455 9.16 0.00 0.00 4.55
4100 4953 2.415893 GCAATTCCACATGAGGTTTCCG 60.416 50.000 9.16 0.00 0.00 4.30
4101 4954 2.562298 TGCAATTCCACATGAGGTTTCC 59.438 45.455 9.16 0.00 0.00 3.13
4102 4955 3.367703 CCTGCAATTCCACATGAGGTTTC 60.368 47.826 9.16 0.00 0.00 2.78
4103 4956 2.564062 CCTGCAATTCCACATGAGGTTT 59.436 45.455 9.16 2.14 0.00 3.27
4104 4957 2.173519 CCTGCAATTCCACATGAGGTT 58.826 47.619 9.16 0.00 0.00 3.50
4105 4958 1.355381 TCCTGCAATTCCACATGAGGT 59.645 47.619 9.16 0.00 0.00 3.85
4106 4959 1.747355 GTCCTGCAATTCCACATGAGG 59.253 52.381 2.20 2.20 0.00 3.86
4107 4960 2.422479 CAGTCCTGCAATTCCACATGAG 59.578 50.000 0.00 0.00 0.00 2.90
4108 4961 2.040145 TCAGTCCTGCAATTCCACATGA 59.960 45.455 0.00 0.00 0.00 3.07
4109 4962 2.422479 CTCAGTCCTGCAATTCCACATG 59.578 50.000 0.00 0.00 0.00 3.21
4110 4963 2.306805 TCTCAGTCCTGCAATTCCACAT 59.693 45.455 0.00 0.00 0.00 3.21
4111 4964 1.699083 TCTCAGTCCTGCAATTCCACA 59.301 47.619 0.00 0.00 0.00 4.17
4112 4965 2.479566 TCTCAGTCCTGCAATTCCAC 57.520 50.000 0.00 0.00 0.00 4.02
4113 4966 3.009363 TGATTCTCAGTCCTGCAATTCCA 59.991 43.478 0.00 0.00 0.00 3.53
4114 4967 3.376546 GTGATTCTCAGTCCTGCAATTCC 59.623 47.826 0.00 0.00 0.00 3.01
4115 4968 3.376546 GGTGATTCTCAGTCCTGCAATTC 59.623 47.826 0.00 0.00 0.00 2.17
4116 4969 3.350833 GGTGATTCTCAGTCCTGCAATT 58.649 45.455 0.00 0.00 0.00 2.32
4117 4970 2.356535 GGGTGATTCTCAGTCCTGCAAT 60.357 50.000 0.00 0.00 0.00 3.56
4118 4971 1.003580 GGGTGATTCTCAGTCCTGCAA 59.996 52.381 0.00 0.00 0.00 4.08
4119 4972 0.615331 GGGTGATTCTCAGTCCTGCA 59.385 55.000 0.00 0.00 0.00 4.41
4120 4973 0.460987 CGGGTGATTCTCAGTCCTGC 60.461 60.000 0.00 0.00 0.00 4.85
4121 4974 0.176680 CCGGGTGATTCTCAGTCCTG 59.823 60.000 0.00 0.00 0.00 3.86
4122 4975 0.252284 ACCGGGTGATTCTCAGTCCT 60.252 55.000 6.32 0.00 0.00 3.85
4123 4976 1.409427 CTACCGGGTGATTCTCAGTCC 59.591 57.143 10.66 0.00 0.00 3.85
4124 4977 1.202428 GCTACCGGGTGATTCTCAGTC 60.202 57.143 10.66 0.00 0.00 3.51
4125 4978 0.824759 GCTACCGGGTGATTCTCAGT 59.175 55.000 10.66 0.00 0.00 3.41
4126 4979 0.105039 GGCTACCGGGTGATTCTCAG 59.895 60.000 10.66 0.00 0.00 3.35
4127 4980 0.616395 TGGCTACCGGGTGATTCTCA 60.616 55.000 10.66 0.00 0.00 3.27
4128 4981 0.539986 TTGGCTACCGGGTGATTCTC 59.460 55.000 10.66 0.00 0.00 2.87
4129 4982 0.541863 CTTGGCTACCGGGTGATTCT 59.458 55.000 10.66 0.00 0.00 2.40
4130 4983 0.539986 TCTTGGCTACCGGGTGATTC 59.460 55.000 10.66 0.00 0.00 2.52
4131 4984 1.141053 GATCTTGGCTACCGGGTGATT 59.859 52.381 10.66 0.00 0.00 2.57
4132 4985 0.759346 GATCTTGGCTACCGGGTGAT 59.241 55.000 10.66 2.25 0.00 3.06
4133 4986 0.616395 TGATCTTGGCTACCGGGTGA 60.616 55.000 10.66 0.00 0.00 4.02
4134 4987 0.179073 CTGATCTTGGCTACCGGGTG 60.179 60.000 10.66 0.00 0.00 4.61
4135 4988 1.972660 GCTGATCTTGGCTACCGGGT 61.973 60.000 6.32 4.46 0.00 5.28
4136 4989 1.227674 GCTGATCTTGGCTACCGGG 60.228 63.158 6.32 0.00 0.00 5.73
4137 4990 1.592669 CGCTGATCTTGGCTACCGG 60.593 63.158 0.00 0.00 0.00 5.28
4138 4991 0.032678 ATCGCTGATCTTGGCTACCG 59.967 55.000 0.00 0.00 0.00 4.02
4139 4992 1.069204 TCATCGCTGATCTTGGCTACC 59.931 52.381 0.00 0.00 0.00 3.18
4140 4993 2.035193 TCTCATCGCTGATCTTGGCTAC 59.965 50.000 0.00 0.00 0.00 3.58
4141 4994 2.310538 TCTCATCGCTGATCTTGGCTA 58.689 47.619 0.00 0.00 0.00 3.93
4142 4995 1.117994 TCTCATCGCTGATCTTGGCT 58.882 50.000 0.00 0.00 0.00 4.75
4143 4996 2.067766 GATCTCATCGCTGATCTTGGC 58.932 52.381 0.00 0.00 36.92 4.52
4144 4997 2.326664 CGATCTCATCGCTGATCTTGG 58.673 52.381 0.00 0.00 46.55 3.61
4155 5008 1.137872 ACTGCCAGGAACGATCTCATC 59.862 52.381 0.00 0.00 0.00 2.92
4156 5009 1.198713 ACTGCCAGGAACGATCTCAT 58.801 50.000 0.00 0.00 0.00 2.90
4157 5010 1.476891 GTACTGCCAGGAACGATCTCA 59.523 52.381 0.00 0.00 0.00 3.27
4158 5011 1.751924 AGTACTGCCAGGAACGATCTC 59.248 52.381 0.00 0.00 0.00 2.75
4159 5012 1.853963 AGTACTGCCAGGAACGATCT 58.146 50.000 0.00 0.00 0.00 2.75
4160 5013 3.130693 AGTTAGTACTGCCAGGAACGATC 59.869 47.826 5.39 0.00 31.99 3.69
4161 5014 3.097614 AGTTAGTACTGCCAGGAACGAT 58.902 45.455 5.39 0.00 31.99 3.73
4162 5015 2.522185 AGTTAGTACTGCCAGGAACGA 58.478 47.619 5.39 0.00 31.99 3.85
4163 5016 2.993899 CAAGTTAGTACTGCCAGGAACG 59.006 50.000 5.39 0.00 34.01 3.95
4164 5017 3.244457 ACCAAGTTAGTACTGCCAGGAAC 60.244 47.826 5.39 0.43 34.01 3.62
4165 5018 2.976882 ACCAAGTTAGTACTGCCAGGAA 59.023 45.455 5.39 0.00 34.01 3.36
4166 5019 2.565834 GACCAAGTTAGTACTGCCAGGA 59.434 50.000 5.39 0.00 34.01 3.86
4167 5020 2.301870 TGACCAAGTTAGTACTGCCAGG 59.698 50.000 5.39 3.77 34.01 4.45
4168 5021 3.244078 TGTGACCAAGTTAGTACTGCCAG 60.244 47.826 5.39 0.00 34.01 4.85
4169 5022 2.701423 TGTGACCAAGTTAGTACTGCCA 59.299 45.455 5.39 0.00 34.01 4.92
4170 5023 3.396260 TGTGACCAAGTTAGTACTGCC 57.604 47.619 5.39 0.00 34.01 4.85
4171 5024 5.238650 ACATTTGTGACCAAGTTAGTACTGC 59.761 40.000 5.39 0.00 34.01 4.40
4172 5025 6.861065 ACATTTGTGACCAAGTTAGTACTG 57.139 37.500 5.39 0.00 34.01 2.74
4188 5041 0.030638 GTTCCAGTGCGCACATTTGT 59.969 50.000 39.21 18.32 0.00 2.83
4189 5042 0.311790 AGTTCCAGTGCGCACATTTG 59.688 50.000 39.21 28.35 0.00 2.32
4190 5043 2.719376 AGTTCCAGTGCGCACATTT 58.281 47.368 39.21 19.13 0.00 2.32
4191 5044 4.481195 AGTTCCAGTGCGCACATT 57.519 50.000 39.21 19.92 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.