>input_sequence_36176
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------------------------------CCTACCCCCCTCTTCAACGGCTACCAGAAAAACGCCGGAAAAGAAAAGAA
AAAGAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGAGAAAGCGGGGGAGGAGAGGAGACGA
CAAGCCCGAGGCAGGCGCCAGCCAGCGACCGAACCCTAGCTGCCAGCCAGGATGGGCAAGCTCCTCTGCGACTCCTCCTC
CGGCGGCGGCGCCGTCGCCGTCGCGGAGGCGCTCCCGCCCTCCCCCGCCCCGGCCTCGCCGCCGCAGCTCCTCGCCTGGG
CCGCCCCCGAGCCCCCCGCCGGCTGGTCCGCCGTCTGGGCGCTCGACGACCAGCAGCGCCGCCGCCTGCTCCGGATCTGG
GAGCGCGGCGTCGCCTGGAAGCCGCCCCGCCAGGGGGGCGACGGCCCGGATGCCCCCGCCCCCGCCCCCGCCGTCGTCTT
CCGCCTCGACCACGGCGGGGAGGTCGAGTCCGACGGCAACTGCCTCTTCACCGCCGCGCGCAGGGCCGCCGCCGCCAAGG
CCGAGGCGCGCGAGCTCCGGCACCGCGCCGTGCGCCGCTTCGCCGACGTCTACGCCGCGGCCGAGGCCTCCGACAGGGCC
GCGGTCGACGCCGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGGTCAA
GCTGCTCGCGCCCAAGGCCGACCGCGACGCCCTCGACGCCGCCATCCAGGAGCTCGTCGGCATCGGCATCCAAAGGTACC
GTGGCCGCCCCGCCAATCCCGGATCTAGTCTTCCTG---CCCGCGCTCGAATCTATTGCTACCACGCGTGTCTGGATCT-
-----------------------AAAGACACCGTCTTTCCTTG---------GAATCACGCGGAATTCGTCTTCCCGTCT
TGCGTTGATCCGATCCCCTTCTCTGTCGAATGAAACAAGTCTAGTCTTTTGTGCTATCTG--TTTATATTTAGACCTTGC
GTTTCTTGATTCTTTCTTATGTTAATTCGCGCAAGAACACCAATTGATGCAATTTCAATGCGTCATGAAGCTGCGAGAAT
CGCCTCACATGGTGTGTTTGTATTCTAGTACCCCGCATATAAATTGGTCAACGAAGGAATCATGGTTTTACTGTTGCCAC
CCTGGCATGGGCTG---TAGTGGCAAAGTATGGACCTTCCAAGTAGATGATTGATATCCAGCCTGTTAATTATGCTGTAG
TACATTATTTGGTACTA---CTACCATTTATGCTTCTTGCCTGGCACTGGTACAACTG----------------------
--------------------------------------------------------------------------------
-----------TAGTGCATCTCAATT------------------------------------------------------
----------------------------------------------AGAATATCGAGTTGATTTGTTTGGTACCATTATG
CTTCTTGCATGTT--------------------------------------------AATTATATGTGCTTATCTTCTTC
ATTGCCTTGCAGGGAACTGGCAGCTGAGACTATCTACAAGGAGAGATGTATCGCTGTAGACGATGGAGATAGTTGGGCCA
AGTACATGTCCATTTCTGGCTCTGCGGAGGATGAACATGACATAATCACCCTGCAGTACACAGAGGAGGGCTTACTGACC
ATCGATGAGAACCGGGATGGGCGTGCGGCTGCGTTTGGTGATGATATTGCCATCGAGTGCCTCGCCACCGAGTTCAAGAG
AGAAGTTTTCGTGGTAA------------------------------------------TTATGTGATTTCTGTCCATAG
AACTTGCCACTGTTTAATGCAGCATTTTATTTGGTGATCTGATTGGATCTTTTATTTGTGCGGCATTGACAGGTGCAAGC
ACATGGCACTGATGCAATGGTTGATGAGGATAACTGCGTGTTCTTCCTCCCACACCTCCCTAGAGGAGAAATCTGCGATG
TGCCCATCTTTCTATTCATGAAGGGAACAGGTGCGTTGTAGATTGGCAGTCTTGTTGTGCTTTCTTCTGCAAGTCATTAT
ATGTCGGAACATGTTAGCCTTAGC------------------------------------------------TAAAGAAT
GTCTATCTCTTCAGTTTTGTTTCTCGTTTCCCTGTCTAAGTAGAAACCCAAATATTTGCCTGCAGCATGGTGTGGTGCTG
GTGCGGACCATTACGAGCCATTGATCGCCACCGTCCTCCAGCATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGA
AGGGGTTGTTGTTGTAG--TCTTTAGTCGGCGATGCAGTCGAGCCAATTTTGTCACCGGAGCTAGAGTGCCGAATTGTGG
AGCAACATCTATACCCAAGAGGAGAGAGGATAGATGATCTGTCTAACTGTGCATTTGCAGGGTCTTGCCTGCTCCTGAAG
CTGTGTACCCTTTTTGTATGGCG-TTTTTTGTTGTTGTA-----------------------------------------
--------------------------------------------------------------------------------
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---------------------
>chr3A_1_TraesCS3A01G082800
AACACAAGTACAATCTCCTCCTAATGAATTGAGACTTGAAATTATCAAGCGGCAAAACTATTTCCTTGATGCGAGCATCG
AATCATCATTAAAGCAACACAAACAATAAATCTGAATGCCCATTTGGTTCCAATAACTTGTGCGTCGGAATCTAC-GAGT
TAGTCTATCAAGAGAAAATAACCAATATTTTTATAGTCTCATATATCTTGTTCATAAACATGGAGTGAAATCAACACCTT
CCATCCTAATTATTTTGACCCATCCTAAGTTAAGCAAGGCACGCAACGACTTCCCTGAACTCAACGTTTCCTGCGTGTCG
TCTCCCTCGTAGGCTAGAGGCAGGAGTCACCTGCTTCTAGATATGCTTTTGAGGTAGAGAACACGAAAAAGATAGAAAAA
GAGATATGTGGAGCCGGCACGCACACATCTATACACATGTGGGGCCACGCAAGCGAAAACACCGTCACTGACCGGTAGCG
AGGGACAACGACAACAAAGCACGTCGGATCTCTCAGAGCAACACGTCTCTACGCGCA-----------------------
------------------------------TAGCAAGTAATGAACATATATCTTGATTGAGTTATTCTACAGGTCAGGCC
A---------------------------------------CGATGACGGTGGATGGCGACACCAAAACACGTAC-TGCAG
CCCTCACAACGGCCCATTTCTAGCAAACATATCAGGCG-------------------------------AACAAACGTCT
CAATTGAGTTGTTTTGGATCTATCTAAAAAAGAAAGGAACCTAACATTTTTGGTTCCTCATAAATCTTGGTCATAACTCA
TAAACATGGAAAGCCCT-AAAAAAACTCATAAACATGGAATGGAGTTAAGTCCATCCATCCC-ATTCATTTCATTATAGG
GAAGAAATGAACACTTTCCATATGCCAATAGCCCGCCAAC-----------GCCA-----------GCGGCAACCAACGG
TAACATCGGCCGCGCGCGCTTCCGGCGGCACAGCGCACTGCTATAACCACTCGTCTCTTCCTCCCCCGGCCGCGACTCCA
CCCCACCCCACCC-CACCCCCACCTACCCCCCTACCCCCCTCTTCAACGGCTACCAGAAAAACGCCGGAAAAGAAAAGAA
AAAGAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGAGAAAGCGGGGGAGGAGAGGAGACGA
CAAGCCCGAGGCAGGCGCCAGCCAGCGACCGAACCCTAGCTGCCAGCCAGGATGGGCAAGCTCCTCTGCGACTCCTCCTC
CGGCGGCGGCGCCGTCGCCGTCGCGGAGGCGCTCCCGCCCTCCCCCGCCCCGGCCTCGCCGCCGCAGCTCCTCGCCTGGG
CCGCCCCCGAGCCCCCCGCCGGCTGGTCCGCCGTCTGGGCGCTCGACGACCAGCAGCGCCGCCGCCTGCTCCGGATCTGG
GAGCGCGGCGTCGCCTGGAAGCCGCCCCGCCAGGGGGGCGACGGCCCGGATGCCCCCGCCCCCGCCCCCGCCGTCGTCTT
CCGCCTCGACCACGGCGGGGAGGTCGAGTCCGACGGCAACTGCCTCTTCACCGCCGCGCGCAGGGCCGCCGCCGCCAAGG
CCGAGGCGCGCGAGCTCCGGCACCGCGCCGTGCGCCGCTTCGCCGACGTCTACGCCGCGGCCGAGGCCTCCGACAGGGCC
GCGGTCGACGCCGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGGTCAA
GCTGCTCGCGCCCAAGGCCGACCGCGACGCCCTCGACGCCGCCATCCAGGAGCTCGTCGGCATCGGCATCCAAAGGTACC
GTGGCCGCCCCGCCAATCCCGGATCTAGTCTTCCTG---CCCGCGCTCGAATCTATTGCTACCACGCGTGTCTGGATCT-
-----------------------AAAGACACCGTCTTTCCTTG---------GAATCACGCGGAATTCGTCTTCCCGTCT
TGCGTTGATCCGATCCCCTTCTCTGTCGAATGAAACAAGTCTAGTCTTTTGTGCTATCTG--TTTATATTTAGACCTTGC
GTTTCTTGATTCTTTCTTATGTTAATTCGCGCAAGAACACCAATTGATGCAATTTCAATGCGTCATGAAGCTGCGAGAAT
CGCCTCACATGGTGTGTTTGTATTCTAGTACCCCGCATATAAATTGGTCAACGAAGGAATCATGGTTTTACTGTTGCCAC
CCTGGCATGGGCTG---TAGTGGCAAAGTATGGACCTTCCAAGTAGATGATTGATATCCAGCCTGTTAATTATGCTGTAG
TACATTATTTGGTACTA---CTACCATTTATGCTTCTTGCCTGGCACTGGTACAACTG----------------------
--------------------------------------------------------------------------------
-----------TAGTGCATCTCAATT------------------------------------------------------
----------------------------------------------AGAATATCGAGTTGATTTGTTTGGTACCATTATG
CTTCTTGCATGTT--------------------------------------------AATTATATGTGCTTATCTTCTTC
ATTGCCTTGCAGGGAACTGGCAGCTGAGACTATCTACAAGGAGAGATGTATCGCTGTAGACGATGGAGATAGTTGGGCCA
AGTACATGTCCATTTCTGGCTCTGCGGAGGATGAACATGACATAATCACCCTGCAGTACACAGAGGAGGGCTTACTGACC
ATCGATGAGAACCGGGATGGGCGTGCGGCTGCGTTTGGTGATGATATTGCCATCGAGTGCCTCGCCACCGAGTTCAAGAG
AGAAGTTTTCGTGGTAA------------------------------------------TTATGTGATTTCTGTCCATAG
AACTTGCCACTGTTTAATGCAGCATTTTATTTGGTGATCTGATTGGATCTTTTATTTGTGCGGCATTGACAGGTGCAAGC
ACATGGCACTGATGCAATGGTTGATGAGGATAACTGCGTGTTCTTCCTCCCACACCTCCCTAGAGGAGAAATCTGCGATG
TGCCCATCTTTCTATTCATGAAGGGAACAGGTGCGTTGTAGATTGGCAGTCTTGTTGTGCTTTCTTCTGCAAGTCATTAT
ATGTCGGAACATGTTAGCCTTAGC------------------------------------------------TAAAGAAT
GTCTATCTCTTCAGTTTTGTTTCTCGTTTCCCTGTCTAAGTAGAAACCCAAATATTTGCCTGCAGCATGGTGTGGTGCTG
GTGCGGACCATTACGAGCCATTGATCGCCACCGTCCTCCAGCATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGA
AGGGGTTGTTGTTGTAG--TCTTTAGTCGGCGATGCAGTCGAGCCAATTTTGTCACCGGAGCTAGAGTGCCGAATTGTGG
AGCAACATCTATACCCAAGAGGAGAGAGGATAGATGATCTGTCTAACTGTGCATTTGCAGGGTCTTGCCTGCTCCTGAAG
CTGTGTACCCTTTTTGTATGGCG-TTTTTTGTTGTTGTATGTTCGTGGTATGGTAGGTTCTGACTGCTGCTAGAGATTGA
GCGAGTGATAGAAACACCGATTCTAGCTTCTTGTTGTTGTGCGCC--ATTGTTGGCCGGCATTCTCCATTTGATTC-TTT
TTGTGAGGGATTCACCATTTGGCGGTTGCTTGCTCGTAGGAGCGGGCATCTGCTCGGACA---GTCCGAATGGAACCGAT
TCATTGG-ATTTTTTTGGTGTTGGGGTGAGGTAT--CTCTTCTAGCCAGCTTTCCCATGTAGCCCCCTGTTCTTGTACTA
GATTTGTTCACAAACATGTGCACAACTGGTACTTGTAATAATGGATGATGCCAATAAGATTGTGAACCTTCATTCATCAA
GAGTGTGACTGAATTTGC-AGTCTGCTTCATCATCAAGCTGTGTTGTGGATTTGTTCTGCCTGTTTTGATGGATCGAAAC
TTGGGTACCATTCTTGATTGATGCTTTTGCTGTTGTTGTGTGCCATTCAATTACATCTGGCACAAAAAAGTGTTTTGGAA
ATGCATTTGCGCCTGCACAATCCAGGAGG--GATTGTTAAAGGTTGTGAACTTTTTTGTGTTTTGATTTCACATGGCGGT
ATATTGCAACCACAAGAGCATATCCCTGCTACCAGTTTGCACGTTGTAGAGTTTGACCATCATTTTTATAGCAGTGTCAC
TATTCGTGCTTTCCCTCTTT-----TTATT-----TAAGAAAAAGCCACCGTGACTTGCTAGCTTTATACTAGTATTAAG
TTAAGCAATCATCCACAATCAATGATAAAATATAATCAAGACAAAGTAGGTGAACTATCTCTACGTCCCAAAATAAGTGT
CTCAACCTTAGTATAACTTTGTAGAGCTACAAAAGGCAAGGAAACGGGGTGGTTGATTCGAGTAGGAATGATCGGAAACC
TCATGTGGAATTGCAGGACTGAGAATCACCCGGTAGCCAAGATCAGCGATGAGATCGTTCCTGGCAGTACTAACTTGGTC
ACAAATGTGCGCACTGGAACT
>chr3D_1
AACATGAGTACAGTCTCTTCCTAATGAATTGAGACTTGAAATTATCAAGCGGCAAAACTTTTTCCTTGATGCGAGCATCG
AATCATCATTGAACCAACACAAACAATAAATCTGAATGCCCATTTAGTTCCTACAATTTGTGCGCCAGAATCTACTGAGT
TAACCTATGAAGAGAAAATAACCAACATTTTTGTGGTCTCATATATCTTGTTCATAAACATGGAGTGAAATCAACACCTT
CCATCCTAATTATTTTAACCCATCCTAAGTTAAGCGGGGCACACGACGACTGCCCTAGACTCGATGTTTCCTGCTTGTCG
TCTCCCTCTTAGGCTAGGGACAGGAGTCACCTGCTTCTAGAGATGCTTTTGAGGTAGAGAACACGAGAAAGATAGAAAAC
AAGATATGTGAAGCCGGCACGTACACATTTATACACATGCGGGGCCACGCCAGCGAAAAGACAGTCACTGACCGGTAGCG
AGGGACGACGACAACAAAACACGTCGGATCCCTCAGAGCAACACATCTCTACGTGCA-----------------------
------------------------------TAGTAAGTAATGAACATATGTCTTGGTTGAGTTACTCTACGTGTGGGGCT
A---------------------------------------CGATGACAGCGGATGGCGACATCAAAACACTTAT-TGCAG
CCCTCGCAACGACCCATTTCTACCAAACATATCAGGTG-------------------------------AAGAGATGTCC
CGATTGAGTTGTTCTGGATCTATCTAGCG----AAGGAACCTAACA-TTTTTGTTCCTCATAAATCTTGGTCATAACTCA
TAAACATGGAAAGCCCTAAAAAAAACTCATAAACATGGAATGGAATCAAGTCCCTCCATCCC-ATTCATTTCATTATAGG
GAAGAAATGAACACTTTCCATATGCCAATAGCCCGCCAAC-----------GCCAGCGGCCAGCCGGCGGCAACCAACGG
TAACATCGGCCGCGCGCGCGCCCGGCGGCACAGCGCACTGCTATAACCACTCGTCTCTTCCTCCCCCCGCCGCGACCCCA
CCCCACCCCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AACCCTAGCTGCCAGCCAGGATGGGCAAGCTCCTCTGCGACTCCTCCCC
CGGCGGCGGCGCCGTCGCCGTCGCCGAGGCCCTCCCGCCCTCCCCCGCCCCTGCCTCGCCGCCGCAGCTCCTCGCCTGGG
CCGCCCCCGAGCCCCCCGCCGGCTGGTCCGCCGTCTGGGCGCTCGACGACCAGCAGCGCCGCCGCCTGCTCCGGATCTGG
GAGCGCGGCGTCGCCTGGAAGCCGCCCCGCCAGGGGGGCGACGGCCCGGAGGCCCCCGCCCCCGCCCCCGCCGTCGTCTT
CCGCCTCGACCACGGTGGGGAGGTCGAGTCCGACGGCAATTGCCTCTTCACCGCCGCGCGGAGGGCCGCCGCCGCCAAGG
CCGAGGCGCGCGAGCTCCGGCACCGCGCCGTGCGCCGCTTCGCCGACGTCTACGCCGCGGCCGAGGCCTCCGACAGGGGC
GCCGTCGACGCCGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTCCAGGAGGTCAA
GCTGCTCGCGCCCAAGGCCGACCGCGACGCCCTCGACGCCGCCATCCAGGAGCTCGTCGGCATCGGCATCCAAAGGTACC
GTGGCTGCCCCGCCAATCCCGGATCTAGTCTTCCTG---CTCGCGCTCGAATCTATTGCTACCATGCGTGTCTGGATCT-
-----------------------AAAGACACCGTCTTTCCTTG---------GAATCACGCGGAATTCGTCTTCCTGTCT
TGCGTTGATCCGATCCCCTTTGCTGTCGAATGAAACAAGTCTAGTCTTTTGTG---TCTG--TTTACATTTAGACCTTGC
GTTTCTTGATTCTTTCTTATGTCAATTCGCGTAAGAACACCAATTGATGCAATTTCAATGCGTCATGAAGCTGCAAGAAT
CGCCTCACATGGTGTGTTTGTATTCTAGTACCCCGC--ATAAATTGGTCAACGAAGGAATCATGGTTTTACTGTTGCCAC
CCTGGCATGGGCTGATGTAGTGGCAAAGTATGGACCTTCCAAGTAGATGATTGATATCCAGCCTGTTAATTGTGCTGTAG
TACATTTTTTGGTACTA---CTACCATTTATGCTTCTTGCCTGGCACTGGTACAATTG----------------------
--------------------------------------------------------------------------------
-----------TAGTACATCTCAATT------------------------------------------------------
----------------------------------------------AGAATATCGAGTTGATTTTTTTGGTACCATTATG
CTTCTTTCATGTT--------------------------------------------AATTATATGTGCTTATCTTCTTC
ATTGCCTTGCAGGGAACTGGCAGCCGAGACTATCTACAAGGAGAGATGTATCGCTGTCGACGATGGAGATAGTTGGGCCA
AGTACATGTCCATTTCTGGTTCTGCGGAGGATGAACATGACATAATCACCCTGCAGTACACAGAGGAGGGCTTGCTGACC
ATCGATGAGAACCGGGATGGGCGCGCGGCTGCGTTTGGTGATGATATTGCCATCGAGTGCCTTGCCACCGAGTTCAAGAG
AGAAGTTTTCGTGGTAAATTCAATAAACTCGCTGATATGATGTTTTTTTTCC-TCTCATTTCTGTTATTTCTGTCAATAG
AACTGGCCACAGTTGTATGCAGCATTTTACATGTTGATCTGATTGAATCTTTTATTTGTGCGGCATTGACAGGTGCAAGC
ACATGGCACTGATGCAATGGTTGATGAGGATAACTGCGTGTTCTTCCTCCCTCACCTCCCTAGAGGAGAAATCTGTGATG
TGCCCATCTTTCTATTCATGAAGGGAACAGGTGCGTTGTTGGTTGGCAGTCTTGTTGTGCTTTCTTCTGCAAGTCAGCCT
TAGCTGATGAGTTTTTTTTTTTTGAGGGAAGGCCATCATGGCTAGCTTTATTAGATCAAAAAACAATTACATTAAAGAGT
GTCTATCTCTTCAGTTTTGTTTCCTGTTTCTCTGTCTAAGTAGATACCCAAATCTTTGCCTGCAGCATGGTGTGGTGCTG
GTGCGGACCATTACGAGCCATTGATCGCCACCGTCCTCCAGCATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGA
AGGGGTTGTTGTTGTAG--TCTTTAGTCGGCGATGCAGTCGAGCCAATTTTGTCACCGGAGCTAGAGTGCCGAATTGTGG
AGCAACATCTATGCCCAAGAG--GAGAGGATAGATGATCTGTCTAACTGTGCATTTGCAGGGTCTTGCCTGCTCCTGAAG
CTGTGTACCTTTTTTGTATGGCG-TTTTCTGTTGTTGTATGTTGGTGGTATGGTAGGTTCTGACTGCTGCTAGAGATTGA
GCGAGTGATAGAAACACCGATTCTAGCTTCTTGTTGTTGTGCGCCCCATTGTTGGCCGGCATTTTCCATTTGATTC-TTT
TTGTGAGGGATTCACCATTTGGCGGTTGCCTGCTCGTAGGAGCGAGCATATGCTCGGACA---GTCAGAATGGAACCGAT
TCATTG-AATTTTTTTGGTGTTGGGGTGAGGTAT--TTCTTCTAGCCAGCTTTCCCATGTAGCCCCCTGTTCTTGTACTA
GCTTTGTTCACAAACATGTGTACAACTGGTACTTGTAATAATGGATGATG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGTTTTGATTTCACATGGCCGT
ATATTGCAACCACAAGAGCATATCCTTGATAGCAGTTTGCGCGTTGTGGAGTTTGACCATCATTTTTATAGCAGTGTCAC
GATTTGTGCTTTCCCTCTTTCTTTCTTTTT-----TAAGAAAAAGCCATCGTGACTAGCTAGCTTTATA------TTAAG
TTAAGCAATCATCCACAATCAATGATAAAATATAAACAGGACAAAGTAGGTGGATTATC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3B_1
AACACGAGTACAAGCTCCTCCTGACTAACTGAGACGTG-AATTATCAAGCGGCAATGCTTTTTCCTCGATGCGAGCATCG
AATCATCATTGAAGCAACACAAACAATAACA-TGAATGCCCATTTGGTTCGTACAATTTGTGCGCGGGAACCTATTGAGT
TAATCTATCAAGAGAAAAGAACCAACATTTTTGTGGTCTCATATATCTTGTTCATAAACTTGGAGTGAAATCAACACCTT
CCATCCTAATTATTTTAACCCATCCTAAGTTAAGCGGGCCACGCAACGACTGCCTTGGATTCGATGTTTCCTGCTTGTCG
TCTCCCTCTTAGGCTAGGGGCAGGAGTCACCTGCTTCTAGAGATGCTTTTGAGGTAGAGAACACGAGAAAGATAAAAAAA
AAGAGATGTGAAGCCGGCACGCACACGTCTATCCACATGTGGGGCCACGCCAGCACAAAGATAGTCATTGGCCGGTAGCG
-----------------AACACGTCAGATCTCTCAGAGCAACACATCTCTCTAGTTGCGTACACTTAGAATGTACTCCCT
CCGTCCCATAATATAAGAACGTTTTCTAGTTAGTAAGTAATGAACACATGTCTTGGTTGAGTCACTCTACGGGCGGGGCC
ACGACAATTTTTTTTAGGGAAACGACAAGAAATAGTTGTCCGATGATGGTGGATGGCGACATCAAAACACCTAGGTGGAG
CTCTCGCAACGACCCATTTCTACTAAATATTGCAAGTTAAGAAATGTCTTTTTCTTTTAGGGAAGTTATAAGAGACGTAT
TGATTAAGTTGTTCTGGATCAACCTAGAGAAAAAAAAAACCTAACATTTTTGGTTCCTCATAAATCTTGGTCATGACTCA
TAG-----------------------------ACATGGAATGGAATCAAGTCCCTCCATCCTTATTCATTTCATTATAGG
GAAGAAATGAACACTTTCCATATGCCAATAGCCCGCCAACGCCAGCGGCCGGCCA-----------GCGGCAACCAACGG
TAACATCGGCCGCGCGCGCTCCCGGCGGCACAGCGCACTGCTATAACCACTCGTCTCTTCCTCCCCCCGCCGCGACTCCA
CCCCACCCCACCCCCACCCCCACCTACCCCCCTCCCCCCCTCTTCAACGGCTACCAGAAAAACGCCGGAAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAAAGCGGGGG----GAGGAGACGA
CAAGCCCGAGGCAGGCGCCAGCCAGCGACCGAACCCTAGCTGCCAGCCAGGATGGGCAAGCTCCTCTGCGAGTCCTCCTC
CGGCGGCGGCGCCGTCGCCGTCGCCGAGGCCCTCCCGCCCTCCCCCGCCCCGGCCTCGCCGCCGCAGCTCCTCGCCTGGG
CCGCCCCCGACCCCCCCGCCGGCTGGTCCGCCGTCTGGGCGCTCGACGACCAGCAGCGCCGCCGCCTGCTCCGGATCTGG
GAGCGCGGCGTCGCCTGGAAGCCGCCCCGCCAGGGGGGCGACGGCCCGGAGGCCCCGC------CCCCCGCCGTCGTCTT
CCGCCTCGACCACGGCGGGGAGGTCGAGTCCGACGGCAACTGCCTCTTCACCGCCGCGCGGAGGGCCGCCGCCGCCAAGG
CCGAGGCGCGCGAGCTCCGGCACCGCGCCGTGCGCCGCTTCGCCGACGTCTACGCCGCGGCCGAGGCCTCCGACAGGGCC
GCGGTCGACGCCGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGGTCAA
GCTGCTCGCGCCCAAGGCCGACCGCGACGCCCTCGACGCCGCCATCCAGGAGCTCGTCGACATCGGCATCCAAAGGTACC
GTGACCGCCCCGCCAATCCCGGATCTAGTAGTCTTCTTCCTCGCGCTCGAATCTGTTGCTACCATGCGTGCCGGGATCTC
AGAAAGGCGTCGCCCTCTCCTTCAAAGACCTCGTCTTTCCCTCCGCTGCCACGAATCACGCGGAATTCGGCTTCCTGTCT
TGCGTTGATCCGATCCCCTTTGCTGTCC-AAGAAAGTTGTCTAGTCTTTTATG---TCTATATTTACATCTTGACCTTGC
GTTTCTTGATTCTTTCTTATGTTAATTCGTGTAGAAACGCCAATTGATGCAATTCCAATGCATCATGAAGCCGCAAGAAT
CGCTTCACATGGTGTCTTAGTAGTATTCTGCCCCGCATG--AATTGGTCAACGAAGGAATCATGGTTTTACTGTTGCCAC
CC-------------------------------------------------TGACATCCAGCCTGTTAATTATGCTGTAG
CACATTATTTGGCACACTACCTACCATTTATGCCGCTTGCCTGGCAATGGTACAATTGCAGTACATCTCTCAGTTTACAA
GTCCTGCGCGTATACCTAGGTTTATACCTAGGTTGCCAATTTTATCACCCTAATATAAACTATATAACACAAAAATTATA
CGGTTTGGAAATAGAACATCTGAATTTTATATTGGTATATTTTTTGAAATACATGACTTGTATTAGATTGGTCAAATTGA
CGACCTAGGGATACGCGCACGCCCTGTAAACTGAGAGAGGGAGTACAGAATATCATGTTGATTTGTAGTGCTAAATTAGA
GTTGCTGTACCCTGTGCAGTTGTGACAGCCCACAGAGGTTGGTCAACTGATCCTCCAAATTGTATGTGCTGATCTTCTTC
ATCGCCTTGCAGGGAACTGGCAGCCGAGACTATCTACAAGGAGAGATGTATTGCTGTAGACGATGGAGATAGTTGGGCCA
AGTACATGTCCATTTCTGGTTCGGCGGAGGATGAGCATGACATAATCACCCTGCAGTACACAGAGGAGGGCTTACTGACC
ATTGATGAGAACCGGGATGGGCGTGCGGCTGCGTTTGGCGATGATATTGCCATCGAGTGCCTCGCCACCGAGTTCAAGAG
AGAAGTTTTCGTGGTAAAGTCAATAAACTCGCTGATATGATGTGTTTATTTTTTCTCAGTTATGTGATTTCTGTCCATAG
AACTGGCCACTGTTGTATGCAGCATTTTACATCTTGGTCTGATTGGATCTTTTATTTGTGCGGCATTGACAGGTACAAGC
ACATGGCACCGATGCAATGGTTGATGAGGATAACTGCGTGTTCTTCCTCCCACACCTCCCTAGAGGAGAAATCTGTGATG
TGCCCATCTTTCTATTCATGAAGGGAACAGGTGCGTTGTAGATTGGCATTCTTGCTGTGCTTTCTTCTGCAAGTCAATAT
GTTAAGGAATGTGTTAGCCTGTTATAGATTGGTATCTATCTCAGTCAGTTGTG---------------------------
--------------------TTTCTGTTTCCCTGTCTAAGTAGAAACCCAAATCTTTACCTGCAGCATGGTGCGGTGCTG
GTGCAGACCATTACGAGCCATTGATCGCCACCGTCCTCCAGCATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGA
GGGGGTTGTTGTTGTAGAGTCTTTAGTCGGCGATGCAGTCGAGCCAATTTTGTCACCGGAGCTAGAGTGCCGAATTGTGG
AGCAACATCTATGCCCAAGAG--GAGAGGATAGATGATCTGTCTAACTGTGCATTTGCAGGGTCTTGCCTGCTCCTGAAG
CTGTGTACCTTTTTTGTATGGCGTTTTTCTGTTGTTGTATGTTCGTGGTATGGTAGGTTCTGACTGCTGCTAGAGATTGA
GCGAGTGATAGAAACACCGATTCTAGCTTCTTGTTGTTGTGCGCCCCATTGTTGGCCGGCATTTTCCATTTCATTCTTTT
TTGTGAGGGATTCACCATTTGTCGGTTGCTTGCTCGTAGGAGCGGGCATATGCTCGGACAACAGTCGGAATGGAACCGAT
TCATTGAAATTTTTTTGGTGTTGGGGTGAGGTATATTTCTACTAGCCAGCTTTCCCATGTAGCTCCCTGTTCTTGTACTA
GCTTTGTTCACAAACATGTGCACAACTGGTACTTGTAATAATGGATGATGCCAATAAGATTGTGAACCTTAATTCATCAG
GAGTGTGACTGAATTTGCAAGTCTGCTTCATCATCAAGCTGTGTTGTCGATTTGTTCTTACTGTTTCGGTGGATCGAAAC
TTGGTTACCATTCTTGATTGATGCTTTTGCTGTTGTTGTGTGCCATTCAATTACATCTGGTACAAAAAAAAATGGTGAAC
CGTGATCCAGGAGGGGTTGCAGTTACCAGCAGATTGCTAAAGGTTGTGAACTTTTT-GTGTTTTGATTTCACATGGCCTT
ATGTTGCAAGCACAAGAGCATATCCCTGATATCAGTTTGCACGTTGTAGAGTTTGACCATCATTTTTATAGCAGTGTCAC
GATTCGTGCTTTTCCTCTTTCTTTCTTTTTTAAGATAAGAAAAAGCCATCGTGACTAGCTAGCTTTATATGAGTATTAAG
TTAAGCAATCATCCACAATCAATGATAAAATATAATCAGGACAAAGTAGGTGGATTAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>SNPs
-----S-----------------------------------------------------S--------------------
----------S----------------------------------------S-S--S-------S---------------
--S----------------------S------S-S---------------------------------------------
----------------S------------------SS--------------S-----S----S-S---------S-----
--------S--------S-----------------------S------------------------S-------------
S---------S---------------------------------------S--------S--S-----------------
------S-----------S-------------------------S--------S--------------------------
---------------------------------S---------------S-----S--------S-----S---SS----
-------------------------------------------------------------S--------S--S------
-----S-----S----------S-------------S----------------------------------S-S------
-S-----------S------------S-S--S------------------------------------------------
--------------------------------------------S-S------S--------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------------------------S------------
---------------------------------S--------------------------------------SSSSSSSS
SSSSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSSS----------
--------------------------------------------------------------------------------
------------------------S-----S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S-----------------------S---------------
---------------------------------------------------------------------------S----
--------------------SS-------------------------------SSS----------S-------------
-------------------------------S------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------SS-------------SS--S----------------------------------------------
---------------------------------------------------------------------------S----
----------------------------------------------------------------------------S---
S--SS----SS----------SSS------------------------------------------------------S-
-----------------------SS----------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S--------SS---------------------------------------------------------
---------S------------------S---------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------------------------------S----------------S-------------
------S-----------------------------S-------------------------------------------
-S--------------------------------------------------------------------S--------S
-----------------------------------------------S----------SS------S-S-----------
----S-------------------------------------------------------S--------SSS-SS--S-S
SSSS--SSSS-SSS-SSSSSSSSSSSSS--------S-------------------S--------------------S--
----------------------------S--S------------------------------------------------
S--------------------------S--------------------S-------S------------SS---------
--------------------------------------S-------------S-S----SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_714
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GGCGACACCAAAACACGTAC------
--------------------------------------------------------------------------------
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>reverse_2201
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----------------------------------------CCGCGCTCGAATCTATTGCT--------------------
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---------------------
>forward_802
--------------------------------------------------------------------------------
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--------------------------------------------------------------TCAGGCGAACAAACGTCT
CA------------------------------------------------------------------------------
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>reverse_3140
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-------------------CTCTGCGGAGGATGAACATGA----------------------------------------
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>forward_1509
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-------------------------------------------------GAAAGAGAAAGCGGGGGAGG-----------
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>reverse_3365
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----TGCCACTGTTTAATGCAGCA--------------------------------------------------------
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>forward_2201
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---------------------CCGGATCTAGTCTTCCTGCC---------------------------------------
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>reverse_4555
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--------------------------------------------------------------------------TTGGAA
ATGCATTTGCGCCT------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------
