Multiple sequence alignment - TraesCS3A01G079800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G079800 chr3A 100.000 2854 0 0 1 2854 51753842 51750989 0.000000e+00 5271
1 TraesCS3A01G079800 chr3A 93.750 112 5 2 2745 2854 334179805 334179916 1.760000e-37 167
2 TraesCS3A01G079800 chr3A 96.907 97 2 1 505 600 648870435 648870531 8.180000e-36 161
3 TraesCS3A01G079800 chr3D 96.802 1376 15 5 598 1961 31446357 31447715 0.000000e+00 2270
4 TraesCS3A01G079800 chr3D 98.793 497 5 1 2265 2760 31447711 31448207 0.000000e+00 883
5 TraesCS3A01G079800 chr3D 96.750 523 10 1 1 516 31445836 31446358 0.000000e+00 865
6 TraesCS3A01G079800 chr7B 99.682 314 1 0 1957 2270 462882904 462883217 2.470000e-160 575
7 TraesCS3A01G079800 chr7B 97.895 95 1 1 515 608 456359510 456359416 2.280000e-36 163
8 TraesCS3A01G079800 chr7B 92.727 110 4 4 511 618 533547851 533547744 3.810000e-34 156
9 TraesCS3A01G079800 chr4B 99.679 312 1 0 1958 2269 385922671 385922982 3.190000e-159 571
10 TraesCS3A01G079800 chr1A 99.367 316 1 1 1958 2273 261368394 261368708 3.190000e-159 571
11 TraesCS3A01G079800 chr1A 96.040 101 4 0 508 608 547903104 547903004 6.330000e-37 165
12 TraesCS3A01G079800 chr6A 100.000 307 0 0 1960 2266 359050962 359051268 4.130000e-158 568
13 TraesCS3A01G079800 chr6A 98.969 97 1 0 2758 2854 346594860 346594764 1.050000e-39 174
14 TraesCS3A01G079800 chr6A 96.190 105 3 1 501 605 374418818 374418715 1.360000e-38 171
15 TraesCS3A01G079800 chr6A 100.000 91 0 0 512 602 374418718 374418808 4.890000e-38 169
16 TraesCS3A01G079800 chr5B 99.048 315 3 0 1951 2265 641808257 641808571 1.480000e-157 566
17 TraesCS3A01G079800 chr5B 95.413 109 4 1 2746 2854 45810401 45810508 3.780000e-39 172
18 TraesCS3A01G079800 chr2A 98.154 325 4 1 1953 2277 143274944 143274622 1.480000e-157 566
19 TraesCS3A01G079800 chr2B 98.738 317 3 1 1958 2273 441872711 441872395 1.920000e-156 562
20 TraesCS3A01G079800 chr2B 94.231 104 5 1 505 607 129661937 129662040 1.060000e-34 158
21 TraesCS3A01G079800 chr3B 99.032 310 3 0 1960 2269 23694781 23694472 8.930000e-155 556
22 TraesCS3A01G079800 chr3B 97.516 322 7 1 1949 2270 635025711 635026031 1.490000e-152 549
23 TraesCS3A01G079800 chr5A 99.000 100 1 0 2755 2854 493472077 493471978 2.260000e-41 180
24 TraesCS3A01G079800 chr5A 98.020 101 1 1 2754 2854 513875270 513875171 1.050000e-39 174
25 TraesCS3A01G079800 chr4D 99.000 100 1 0 2755 2854 357312000 357312099 2.260000e-41 180
26 TraesCS3A01G079800 chr7D 90.370 135 10 3 2722 2854 579632834 579632701 1.050000e-39 174
27 TraesCS3A01G079800 chr2D 96.190 105 4 0 2750 2854 300705141 300705037 3.780000e-39 172
28 TraesCS3A01G079800 chrUn 95.283 106 5 0 2749 2854 108368376 108368481 4.890000e-38 169
29 TraesCS3A01G079800 chr6B 96.000 100 3 1 514 612 357123617 357123716 8.180000e-36 161
30 TraesCS3A01G079800 chr4A 94.340 106 4 2 513 617 464953607 464953503 8.180000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G079800 chr3A 51750989 51753842 2853 True 5271.000000 5271 100.000000 1 2854 1 chr3A.!!$R1 2853
1 TraesCS3A01G079800 chr3D 31445836 31448207 2371 False 1339.333333 2270 97.448333 1 2760 3 chr3D.!!$F1 2759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 537 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2266 0.11319 AGGCCTCCTTTGGTTTGGAG 59.887 55.0 0.0 0.0 46.91 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.549754 CGTCTCCATCCCAATAATGCAC 59.450 50.000 0.00 0.00 0.00 4.57
232 240 3.123804 CCTAATCCATGTGCGTAGTCAC 58.876 50.000 0.00 0.00 35.67 3.67
238 246 2.163613 CCATGTGCGTAGTCACTACTCA 59.836 50.000 13.21 8.49 37.15 3.41
261 269 0.690762 GCAGGAAGGTTACCCAGTCA 59.309 55.000 0.00 0.00 0.00 3.41
289 297 0.747255 AATCGATCGACCAGGACCTG 59.253 55.000 22.06 15.15 0.00 4.00
341 349 2.433318 GCACCGCTCCTCACTGAC 60.433 66.667 0.00 0.00 0.00 3.51
343 351 1.080230 CACCGCTCCTCACTGACAG 60.080 63.158 0.00 0.00 0.00 3.51
515 523 4.507710 CTTTGCCATGTCAGTAGAAGCTA 58.492 43.478 0.00 0.00 0.00 3.32
516 524 3.526931 TGCCATGTCAGTAGAAGCTAC 57.473 47.619 0.00 0.00 0.00 3.58
517 525 3.099905 TGCCATGTCAGTAGAAGCTACT 58.900 45.455 1.42 1.42 0.00 2.57
518 526 3.131223 TGCCATGTCAGTAGAAGCTACTC 59.869 47.826 4.23 0.00 0.00 2.59
519 527 3.491792 GCCATGTCAGTAGAAGCTACTCC 60.492 52.174 4.23 0.30 0.00 3.85
520 528 3.068873 CCATGTCAGTAGAAGCTACTCCC 59.931 52.174 4.23 0.00 0.00 4.30
521 529 3.741245 TGTCAGTAGAAGCTACTCCCT 57.259 47.619 4.23 0.00 0.00 4.20
522 530 3.622630 TGTCAGTAGAAGCTACTCCCTC 58.377 50.000 4.23 0.00 0.00 4.30
523 531 2.953648 GTCAGTAGAAGCTACTCCCTCC 59.046 54.545 4.23 0.00 0.00 4.30
524 532 1.950909 CAGTAGAAGCTACTCCCTCCG 59.049 57.143 4.23 0.00 0.00 4.63
525 533 1.565288 AGTAGAAGCTACTCCCTCCGT 59.435 52.381 1.42 0.00 0.00 4.69
526 534 2.025131 AGTAGAAGCTACTCCCTCCGTT 60.025 50.000 1.42 0.00 0.00 4.44
527 535 1.476477 AGAAGCTACTCCCTCCGTTC 58.524 55.000 0.00 0.00 0.00 3.95
528 536 0.460722 GAAGCTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
529 537 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
530 538 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
531 539 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
532 540 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
533 541 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
534 542 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
535 543 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
536 544 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
537 545 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
538 546 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
539 547 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
540 548 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
541 549 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
542 550 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
543 551 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
544 552 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
545 553 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
546 554 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
547 555 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
548 556 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
549 557 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
550 558 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
551 559 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
552 560 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
553 561 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
554 562 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
555 563 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
556 564 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
557 565 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
558 566 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
559 567 7.970102 AGATGACCCAACTTTGTACTAACTTA 58.030 34.615 0.00 0.00 0.00 2.24
560 568 8.095169 AGATGACCCAACTTTGTACTAACTTAG 58.905 37.037 0.00 0.00 0.00 2.18
561 569 7.128234 TGACCCAACTTTGTACTAACTTAGT 57.872 36.000 6.68 6.68 42.68 2.24
562 570 8.248904 TGACCCAACTTTGTACTAACTTAGTA 57.751 34.615 4.76 4.76 40.14 1.82
575 583 7.128234 ACTAACTTAGTACAAAGTTGGGTCA 57.872 36.000 14.60 0.00 46.44 4.02
576 584 7.742767 ACTAACTTAGTACAAAGTTGGGTCAT 58.257 34.615 14.60 0.00 46.44 3.06
577 585 7.876582 ACTAACTTAGTACAAAGTTGGGTCATC 59.123 37.037 14.60 0.00 46.44 2.92
578 586 6.435292 ACTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 36.26 2.90
579 587 7.549147 ACTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 36.26 1.98
580 588 8.147244 ACTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 36.26 1.98
581 589 8.603304 ACTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 36.26 1.73
582 590 9.449719 CTTAGTACAAAGTTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
583 591 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
584 592 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
585 593 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
586 594 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
587 595 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
588 596 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
589 597 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
590 598 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
591 599 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
592 600 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
593 601 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
594 602 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
595 603 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
596 604 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
597 605 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
640 648 1.813786 CACCCTAGCCTAGATAGTCGC 59.186 57.143 0.00 0.00 0.00 5.19
641 649 1.706305 ACCCTAGCCTAGATAGTCGCT 59.294 52.381 0.00 0.00 35.34 4.93
642 650 2.088423 CCCTAGCCTAGATAGTCGCTG 58.912 57.143 0.00 0.00 32.76 5.18
643 651 2.088423 CCTAGCCTAGATAGTCGCTGG 58.912 57.143 0.00 0.00 32.76 4.85
644 652 2.290387 CCTAGCCTAGATAGTCGCTGGA 60.290 54.545 0.00 0.00 32.06 3.86
645 653 1.904287 AGCCTAGATAGTCGCTGGAG 58.096 55.000 0.00 0.00 0.00 3.86
646 654 1.144093 AGCCTAGATAGTCGCTGGAGT 59.856 52.381 0.00 0.00 0.00 3.85
647 655 2.372504 AGCCTAGATAGTCGCTGGAGTA 59.627 50.000 0.00 0.00 32.79 2.59
648 656 2.745281 GCCTAGATAGTCGCTGGAGTAG 59.255 54.545 0.00 0.00 31.80 2.57
649 657 3.807913 GCCTAGATAGTCGCTGGAGTAGT 60.808 52.174 0.00 0.00 31.80 2.73
650 658 4.563168 GCCTAGATAGTCGCTGGAGTAGTA 60.563 50.000 0.00 0.00 31.80 1.82
651 659 4.931002 CCTAGATAGTCGCTGGAGTAGTAC 59.069 50.000 0.00 0.00 31.80 2.73
652 660 4.418973 AGATAGTCGCTGGAGTAGTACA 57.581 45.455 2.52 0.00 31.80 2.90
842 850 1.851304 TCCTGTTTTCCCATCCATGC 58.149 50.000 0.00 0.00 0.00 4.06
843 851 1.076841 TCCTGTTTTCCCATCCATGCA 59.923 47.619 0.00 0.00 0.00 3.96
844 852 2.112998 CCTGTTTTCCCATCCATGCAT 58.887 47.619 0.00 0.00 0.00 3.96
845 853 2.159014 CCTGTTTTCCCATCCATGCATG 60.159 50.000 20.19 20.19 0.00 4.06
1172 1180 1.527736 TCATGTTGTTTCGCGTGTACC 59.472 47.619 5.77 0.00 0.00 3.34
1178 1186 0.638746 GTTTCGCGTGTACCGATGAG 59.361 55.000 5.77 0.00 39.56 2.90
1186 1194 2.858344 CGTGTACCGATGAGTGAAATCC 59.142 50.000 0.00 0.00 39.56 3.01
1242 1250 2.316687 GTGCGCATAGTTCGTCGC 59.683 61.111 15.91 0.00 46.78 5.19
1432 1440 1.442526 CTGGTCTGGCCGAATCATGC 61.443 60.000 0.00 0.00 41.21 4.06
1729 1737 3.139397 ACATGGTAAACCCTCAAGTTGGA 59.861 43.478 2.34 0.00 34.29 3.53
1831 1851 0.812811 TCGATCCATGAGCTGCTTGC 60.813 55.000 2.53 0.00 43.29 4.01
1864 1884 1.134226 GCAACATGAAGCAGTGCAAC 58.866 50.000 19.20 11.09 0.00 4.17
1923 1943 5.359009 TGATGATCTCTTTCCCAAAATGCTC 59.641 40.000 0.00 0.00 0.00 4.26
1962 1982 7.344095 TGGACACTTAGATACTTACTTAGGC 57.656 40.000 0.00 0.00 0.00 3.93
1963 1983 6.323225 TGGACACTTAGATACTTACTTAGGCC 59.677 42.308 0.00 0.00 0.00 5.19
1964 1984 6.550481 GGACACTTAGATACTTACTTAGGCCT 59.450 42.308 11.78 11.78 0.00 5.19
1965 1985 7.255555 GGACACTTAGATACTTACTTAGGCCTC 60.256 44.444 9.68 0.00 0.00 4.70
1966 1986 6.550481 ACACTTAGATACTTACTTAGGCCTCC 59.450 42.308 9.68 0.00 0.00 4.30
1967 1987 6.778559 CACTTAGATACTTACTTAGGCCTCCT 59.221 42.308 9.68 0.00 37.71 3.69
1968 1988 7.288158 CACTTAGATACTTACTTAGGCCTCCTT 59.712 40.741 9.68 0.00 34.61 3.36
1969 1989 7.845289 ACTTAGATACTTACTTAGGCCTCCTTT 59.155 37.037 9.68 0.00 34.61 3.11
1970 1990 6.487299 AGATACTTACTTAGGCCTCCTTTG 57.513 41.667 9.68 0.00 34.61 2.77
1971 1991 5.367060 AGATACTTACTTAGGCCTCCTTTGG 59.633 44.000 9.68 0.00 34.61 3.28
1972 1992 3.257578 ACTTACTTAGGCCTCCTTTGGT 58.742 45.455 9.68 0.00 34.61 3.67
1973 1993 3.656264 ACTTACTTAGGCCTCCTTTGGTT 59.344 43.478 9.68 0.00 34.61 3.67
1974 1994 2.881111 ACTTAGGCCTCCTTTGGTTC 57.119 50.000 9.68 0.00 34.61 3.62
1975 1995 2.062636 ACTTAGGCCTCCTTTGGTTCA 58.937 47.619 9.68 0.00 34.61 3.18
1976 1996 2.649816 ACTTAGGCCTCCTTTGGTTCAT 59.350 45.455 9.68 0.00 34.61 2.57
1977 1997 3.850173 ACTTAGGCCTCCTTTGGTTCATA 59.150 43.478 9.68 0.00 34.61 2.15
1978 1998 4.080299 ACTTAGGCCTCCTTTGGTTCATAG 60.080 45.833 9.68 0.00 34.61 2.23
1979 1999 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
1980 2000 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
1981 2001 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
1982 2002 3.373110 GGCCTCCTTTGGTTCATAGGATT 60.373 47.826 0.00 0.00 39.94 3.01
1983 2003 3.633986 GCCTCCTTTGGTTCATAGGATTG 59.366 47.826 7.38 4.49 39.94 2.67
1984 2004 4.210331 CCTCCTTTGGTTCATAGGATTGG 58.790 47.826 7.38 3.85 39.94 3.16
1985 2005 4.079787 CCTCCTTTGGTTCATAGGATTGGA 60.080 45.833 7.38 0.00 39.94 3.53
1986 2006 5.509498 CTCCTTTGGTTCATAGGATTGGAA 58.491 41.667 7.38 0.00 39.94 3.53
1987 2007 5.898120 TCCTTTGGTTCATAGGATTGGAAA 58.102 37.500 3.54 0.00 36.84 3.13
1988 2008 6.318913 TCCTTTGGTTCATAGGATTGGAAAA 58.681 36.000 3.54 0.00 36.84 2.29
1989 2009 6.959366 TCCTTTGGTTCATAGGATTGGAAAAT 59.041 34.615 3.54 0.00 36.84 1.82
1990 2010 7.124147 TCCTTTGGTTCATAGGATTGGAAAATC 59.876 37.037 3.54 0.00 36.84 2.17
1991 2011 7.093377 CCTTTGGTTCATAGGATTGGAAAATCA 60.093 37.037 0.00 0.00 35.14 2.57
1992 2012 7.976414 TTGGTTCATAGGATTGGAAAATCAT 57.024 32.000 1.28 0.00 0.00 2.45
1993 2013 9.486123 TTTGGTTCATAGGATTGGAAAATCATA 57.514 29.630 1.28 0.00 31.19 2.15
1994 2014 8.696043 TGGTTCATAGGATTGGAAAATCATAG 57.304 34.615 1.28 0.00 30.31 2.23
1995 2015 7.725397 TGGTTCATAGGATTGGAAAATCATAGG 59.275 37.037 1.28 0.58 30.31 2.57
1996 2016 7.944554 GGTTCATAGGATTGGAAAATCATAGGA 59.055 37.037 4.08 4.08 35.40 2.94
1997 2017 9.354673 GTTCATAGGATTGGAAAATCATAGGAA 57.645 33.333 13.10 13.10 41.07 3.36
2002 2022 8.293027 AGGATTGGAAAATCATAGGAATAGGA 57.707 34.615 1.28 0.00 0.00 2.94
2003 2023 8.736675 AGGATTGGAAAATCATAGGAATAGGAA 58.263 33.333 1.28 0.00 0.00 3.36
2004 2024 9.367160 GGATTGGAAAATCATAGGAATAGGAAA 57.633 33.333 1.28 0.00 0.00 3.13
2006 2026 9.942526 ATTGGAAAATCATAGGAATAGGAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
2007 2027 8.980481 TGGAAAATCATAGGAATAGGAAAGTC 57.020 34.615 0.00 0.00 0.00 3.01
2008 2028 8.556589 TGGAAAATCATAGGAATAGGAAAGTCA 58.443 33.333 0.00 0.00 0.00 3.41
2009 2029 9.579932 GGAAAATCATAGGAATAGGAAAGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
2013 2033 9.621239 AATCATAGGAATAGGAAAGTCATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
2014 2034 9.621239 ATCATAGGAATAGGAAAGTCATAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
2015 2035 9.447279 TCATAGGAATAGGAAAGTCATAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
2018 2038 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
2019 2039 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
2020 2040 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
2022 2042 9.790344 AATAGGAAAGTCATAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
2023 2043 7.443302 AGGAAAGTCATAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
2024 2044 7.278875 AGGAAAGTCATAGGAAATGAGATGAC 58.721 38.462 5.86 5.86 45.57 3.06
2025 2045 7.050377 GGAAAGTCATAGGAAATGAGATGACA 58.950 38.462 14.37 0.00 46.94 3.58
2026 2046 7.718753 GGAAAGTCATAGGAAATGAGATGACAT 59.281 37.037 14.37 1.96 46.94 3.06
2027 2047 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
2028 2048 5.996513 AGTCATAGGAAATGAGATGACATGC 59.003 40.000 14.37 0.00 46.94 4.06
2029 2049 5.761726 GTCATAGGAAATGAGATGACATGCA 59.238 40.000 8.58 0.00 44.91 3.96
2030 2050 6.430308 GTCATAGGAAATGAGATGACATGCAT 59.570 38.462 8.58 0.00 44.91 3.96
2043 2063 6.819397 ATGACATGCATCTCAAATCCTATG 57.181 37.500 8.81 0.00 28.85 2.23
2044 2064 4.517832 TGACATGCATCTCAAATCCTATGC 59.482 41.667 1.73 0.00 43.92 3.14
2066 2086 7.502120 TGCATAGGAATAGAAAAAGAGATGC 57.498 36.000 0.00 0.00 37.16 3.91
2067 2087 6.488006 TGCATAGGAATAGAAAAAGAGATGCC 59.512 38.462 0.00 0.00 36.09 4.40
2068 2088 6.072230 GCATAGGAATAGAAAAAGAGATGCCC 60.072 42.308 0.00 0.00 31.89 5.36
2069 2089 5.723860 AGGAATAGAAAAAGAGATGCCCT 57.276 39.130 0.00 0.00 0.00 5.19
2070 2090 6.084749 AGGAATAGAAAAAGAGATGCCCTT 57.915 37.500 0.00 0.00 0.00 3.95
2071 2091 6.497640 AGGAATAGAAAAAGAGATGCCCTTT 58.502 36.000 0.00 0.00 35.55 3.11
2072 2092 6.379417 AGGAATAGAAAAAGAGATGCCCTTTG 59.621 38.462 0.00 0.00 34.42 2.77
2073 2093 6.378280 GGAATAGAAAAAGAGATGCCCTTTGA 59.622 38.462 0.00 0.00 34.42 2.69
2074 2094 7.069208 GGAATAGAAAAAGAGATGCCCTTTGAT 59.931 37.037 0.00 0.00 34.42 2.57
2075 2095 7.968014 ATAGAAAAAGAGATGCCCTTTGATT 57.032 32.000 0.00 0.00 34.42 2.57
2076 2096 6.278172 AGAAAAAGAGATGCCCTTTGATTC 57.722 37.500 0.00 0.00 34.42 2.52
2077 2097 5.776716 AGAAAAAGAGATGCCCTTTGATTCA 59.223 36.000 0.00 0.00 34.42 2.57
2078 2098 5.397142 AAAAGAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.42 3.18
2079 2099 3.726557 AGAGATGCCCTTTGATTCACA 57.273 42.857 0.00 0.00 0.00 3.58
2080 2100 3.350833 AGAGATGCCCTTTGATTCACAC 58.649 45.455 0.00 0.00 0.00 3.82
2081 2101 2.424956 GAGATGCCCTTTGATTCACACC 59.575 50.000 0.00 0.00 0.00 4.16
2082 2102 2.170166 GATGCCCTTTGATTCACACCA 58.830 47.619 0.00 0.00 0.00 4.17
2083 2103 2.307496 TGCCCTTTGATTCACACCAT 57.693 45.000 0.00 0.00 0.00 3.55
2084 2104 3.448093 TGCCCTTTGATTCACACCATA 57.552 42.857 0.00 0.00 0.00 2.74
2085 2105 3.355378 TGCCCTTTGATTCACACCATAG 58.645 45.455 0.00 0.00 0.00 2.23
2086 2106 2.689983 GCCCTTTGATTCACACCATAGG 59.310 50.000 0.00 0.00 33.22 2.57
2087 2107 3.624707 GCCCTTTGATTCACACCATAGGA 60.625 47.826 0.00 0.00 34.69 2.94
2088 2108 4.796606 CCCTTTGATTCACACCATAGGAT 58.203 43.478 0.00 0.00 34.69 3.24
2089 2109 5.203528 CCCTTTGATTCACACCATAGGATT 58.796 41.667 0.00 0.00 34.69 3.01
2090 2110 5.658190 CCCTTTGATTCACACCATAGGATTT 59.342 40.000 0.00 0.00 34.69 2.17
2091 2111 6.155049 CCCTTTGATTCACACCATAGGATTTT 59.845 38.462 0.00 0.00 34.69 1.82
2092 2112 7.310609 CCCTTTGATTCACACCATAGGATTTTT 60.311 37.037 0.00 0.00 34.69 1.94
2113 2133 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
2114 2134 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
2115 2135 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
2116 2136 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
2117 2137 6.115446 TCCATTGAGTCTAGGCTAATGTTTG 58.885 40.000 17.62 8.79 0.00 2.93
2118 2138 5.882557 CCATTGAGTCTAGGCTAATGTTTGT 59.117 40.000 17.62 0.00 0.00 2.83
2119 2139 6.375455 CCATTGAGTCTAGGCTAATGTTTGTT 59.625 38.462 17.62 0.00 0.00 2.83
2120 2140 7.094205 CCATTGAGTCTAGGCTAATGTTTGTTT 60.094 37.037 17.62 0.00 0.00 2.83
2121 2141 7.817418 TTGAGTCTAGGCTAATGTTTGTTTT 57.183 32.000 0.00 0.00 0.00 2.43
2122 2142 7.435068 TGAGTCTAGGCTAATGTTTGTTTTC 57.565 36.000 0.00 0.00 0.00 2.29
2123 2143 6.430000 TGAGTCTAGGCTAATGTTTGTTTTCC 59.570 38.462 0.00 0.00 0.00 3.13
2124 2144 6.543735 AGTCTAGGCTAATGTTTGTTTTCCT 58.456 36.000 0.00 0.00 0.00 3.36
2125 2145 7.686434 AGTCTAGGCTAATGTTTGTTTTCCTA 58.314 34.615 0.00 0.00 0.00 2.94
2126 2146 8.329502 AGTCTAGGCTAATGTTTGTTTTCCTAT 58.670 33.333 0.00 0.00 0.00 2.57
2127 2147 8.398665 GTCTAGGCTAATGTTTGTTTTCCTATG 58.601 37.037 0.00 0.00 0.00 2.23
2128 2148 8.325787 TCTAGGCTAATGTTTGTTTTCCTATGA 58.674 33.333 0.00 0.00 0.00 2.15
2129 2149 7.775053 AGGCTAATGTTTGTTTTCCTATGAA 57.225 32.000 0.00 0.00 0.00 2.57
2130 2150 8.189119 AGGCTAATGTTTGTTTTCCTATGAAA 57.811 30.769 0.00 0.00 38.69 2.69
2131 2151 8.815912 AGGCTAATGTTTGTTTTCCTATGAAAT 58.184 29.630 0.00 0.00 40.08 2.17
2132 2152 8.872845 GGCTAATGTTTGTTTTCCTATGAAATG 58.127 33.333 0.00 0.00 40.08 2.32
2133 2153 9.423061 GCTAATGTTTGTTTTCCTATGAAATGT 57.577 29.630 0.00 0.00 40.08 2.71
2135 2155 8.606040 AATGTTTGTTTTCCTATGAAATGTGG 57.394 30.769 0.00 0.00 40.08 4.17
2136 2156 7.353414 TGTTTGTTTTCCTATGAAATGTGGA 57.647 32.000 0.00 0.00 40.08 4.02
2137 2157 7.432869 TGTTTGTTTTCCTATGAAATGTGGAG 58.567 34.615 0.00 0.00 40.08 3.86
2138 2158 6.588719 TTGTTTTCCTATGAAATGTGGAGG 57.411 37.500 0.00 0.00 40.08 4.30
2139 2159 5.886609 TGTTTTCCTATGAAATGTGGAGGA 58.113 37.500 0.00 0.00 40.08 3.71
2140 2160 6.493166 TGTTTTCCTATGAAATGTGGAGGAT 58.507 36.000 0.00 0.00 40.08 3.24
2141 2161 7.638444 TGTTTTCCTATGAAATGTGGAGGATA 58.362 34.615 0.00 0.00 40.08 2.59
2142 2162 7.775093 TGTTTTCCTATGAAATGTGGAGGATAG 59.225 37.037 0.00 0.00 40.08 2.08
2143 2163 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
2144 2164 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
2145 2165 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
2146 2166 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
2147 2167 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
2148 2168 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
2149 2169 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
2150 2170 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
2151 2171 7.056635 TGAAATGTGGAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
2188 2208 7.232118 AGGATTTCATTCCTACAAACCAAAG 57.768 36.000 0.00 0.00 44.50 2.77
2189 2209 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
2190 2210 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
2191 2211 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
2192 2212 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
2193 2213 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
2194 2214 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
2195 2215 4.008074 TCCTACAAACCAAAGAGCTCTG 57.992 45.455 19.06 7.57 0.00 3.35
2196 2216 3.646162 TCCTACAAACCAAAGAGCTCTGA 59.354 43.478 19.06 2.19 0.00 3.27
2197 2217 4.102524 TCCTACAAACCAAAGAGCTCTGAA 59.897 41.667 19.06 0.00 0.00 3.02
2198 2218 4.453819 CCTACAAACCAAAGAGCTCTGAAG 59.546 45.833 19.06 11.19 0.00 3.02
2199 2219 3.217626 ACAAACCAAAGAGCTCTGAAGG 58.782 45.455 19.06 20.58 0.00 3.46
2200 2220 3.117888 ACAAACCAAAGAGCTCTGAAGGA 60.118 43.478 27.00 0.00 0.00 3.36
2201 2221 3.864789 AACCAAAGAGCTCTGAAGGAA 57.135 42.857 27.00 0.00 0.00 3.36
2202 2222 4.379302 AACCAAAGAGCTCTGAAGGAAT 57.621 40.909 27.00 16.39 0.00 3.01
2203 2223 4.379302 ACCAAAGAGCTCTGAAGGAATT 57.621 40.909 27.00 11.51 0.00 2.17
2204 2224 4.734266 ACCAAAGAGCTCTGAAGGAATTT 58.266 39.130 27.00 10.86 0.00 1.82
2205 2225 5.143369 ACCAAAGAGCTCTGAAGGAATTTT 58.857 37.500 27.00 10.23 0.00 1.82
2206 2226 5.600069 ACCAAAGAGCTCTGAAGGAATTTTT 59.400 36.000 27.00 9.59 0.00 1.94
2207 2227 6.155136 CCAAAGAGCTCTGAAGGAATTTTTC 58.845 40.000 19.06 0.00 0.00 2.29
2254 2274 9.817809 GAAAATCCTATAAAATTCCTCCAAACC 57.182 33.333 0.00 0.00 0.00 3.27
2255 2275 8.909423 AAATCCTATAAAATTCCTCCAAACCA 57.091 30.769 0.00 0.00 0.00 3.67
2256 2276 8.909423 AATCCTATAAAATTCCTCCAAACCAA 57.091 30.769 0.00 0.00 0.00 3.67
2257 2277 8.909423 ATCCTATAAAATTCCTCCAAACCAAA 57.091 30.769 0.00 0.00 0.00 3.28
2258 2278 8.361169 TCCTATAAAATTCCTCCAAACCAAAG 57.639 34.615 0.00 0.00 0.00 2.77
2259 2279 7.398904 TCCTATAAAATTCCTCCAAACCAAAGG 59.601 37.037 0.00 0.00 0.00 3.11
2260 2280 7.398904 CCTATAAAATTCCTCCAAACCAAAGGA 59.601 37.037 0.00 0.00 37.42 3.36
2264 2284 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
2265 2285 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
2267 2287 1.783979 TCCAAACCAAAGGAGGCCTTA 59.216 47.619 6.77 0.00 43.92 2.69
2268 2288 2.171003 CCAAACCAAAGGAGGCCTTAG 58.829 52.381 6.77 0.00 43.92 2.18
2458 2478 6.265196 TGGTACGGTATCAATCCTACGTTTAT 59.735 38.462 0.00 0.00 35.97 1.40
2546 2566 8.438676 ACTAATTTAGTTGATGTACCAGCATC 57.561 34.615 3.16 0.00 43.97 3.91
2593 2613 5.236047 GCAAAAACATGCACTCCATTTTGTA 59.764 36.000 18.25 0.00 45.70 2.41
2768 2789 9.948964 AATTTTATTAGTTTGTACTACCTCCGT 57.051 29.630 0.00 0.00 36.61 4.69
2769 2790 9.948964 ATTTTATTAGTTTGTACTACCTCCGTT 57.051 29.630 0.00 0.00 36.61 4.44
2770 2791 8.986477 TTTATTAGTTTGTACTACCTCCGTTC 57.014 34.615 0.00 0.00 36.61 3.95
2771 2792 3.949842 AGTTTGTACTACCTCCGTTCC 57.050 47.619 0.00 0.00 31.21 3.62
2772 2793 3.504375 AGTTTGTACTACCTCCGTTCCT 58.496 45.455 0.00 0.00 31.21 3.36
2773 2794 4.666512 AGTTTGTACTACCTCCGTTCCTA 58.333 43.478 0.00 0.00 31.21 2.94
2774 2795 5.079643 AGTTTGTACTACCTCCGTTCCTAA 58.920 41.667 0.00 0.00 31.21 2.69
2775 2796 5.539955 AGTTTGTACTACCTCCGTTCCTAAA 59.460 40.000 0.00 0.00 31.21 1.85
2776 2797 6.212187 AGTTTGTACTACCTCCGTTCCTAAAT 59.788 38.462 0.00 0.00 31.21 1.40
2777 2798 7.397192 AGTTTGTACTACCTCCGTTCCTAAATA 59.603 37.037 0.00 0.00 31.21 1.40
2778 2799 7.902920 TTGTACTACCTCCGTTCCTAAATAT 57.097 36.000 0.00 0.00 0.00 1.28
2779 2800 7.902920 TGTACTACCTCCGTTCCTAAATATT 57.097 36.000 0.00 0.00 0.00 1.28
2780 2801 8.310122 TGTACTACCTCCGTTCCTAAATATTT 57.690 34.615 5.89 5.89 0.00 1.40
2781 2802 8.199449 TGTACTACCTCCGTTCCTAAATATTTG 58.801 37.037 11.05 1.40 0.00 2.32
2782 2803 7.191593 ACTACCTCCGTTCCTAAATATTTGT 57.808 36.000 11.05 0.00 0.00 2.83
2783 2804 7.270779 ACTACCTCCGTTCCTAAATATTTGTC 58.729 38.462 11.05 0.00 0.00 3.18
2784 2805 6.309389 ACCTCCGTTCCTAAATATTTGTCT 57.691 37.500 11.05 0.00 0.00 3.41
2785 2806 6.718294 ACCTCCGTTCCTAAATATTTGTCTT 58.282 36.000 11.05 0.00 0.00 3.01
2786 2807 7.173032 ACCTCCGTTCCTAAATATTTGTCTTT 58.827 34.615 11.05 0.00 0.00 2.52
2787 2808 7.336176 ACCTCCGTTCCTAAATATTTGTCTTTC 59.664 37.037 11.05 0.00 0.00 2.62
2788 2809 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2789 2810 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2790 2811 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2791 2812 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2804 2825 8.924511 TTGTCTTTCTAGAGATTTCAAATGGT 57.075 30.769 0.00 0.00 0.00 3.55
2805 2826 8.924511 TGTCTTTCTAGAGATTTCAAATGGTT 57.075 30.769 0.00 0.00 0.00 3.67
2808 2829 9.449719 TCTTTCTAGAGATTTCAAATGGTTACC 57.550 33.333 0.00 0.00 0.00 2.85
2809 2830 9.231297 CTTTCTAGAGATTTCAAATGGTTACCA 57.769 33.333 6.53 6.53 38.19 3.25
2810 2831 8.561738 TTCTAGAGATTTCAAATGGTTACCAC 57.438 34.615 6.10 0.00 35.80 4.16
2811 2832 7.685481 TCTAGAGATTTCAAATGGTTACCACA 58.315 34.615 6.10 0.00 35.80 4.17
2812 2833 8.328758 TCTAGAGATTTCAAATGGTTACCACAT 58.671 33.333 6.10 0.00 35.80 3.21
2813 2834 9.613428 CTAGAGATTTCAAATGGTTACCACATA 57.387 33.333 6.10 0.00 35.80 2.29
2814 2835 8.281212 AGAGATTTCAAATGGTTACCACATAC 57.719 34.615 6.10 0.00 35.80 2.39
2815 2836 7.065803 AGAGATTTCAAATGGTTACCACATACG 59.934 37.037 6.10 0.00 35.80 3.06
2816 2837 5.630661 TTTCAAATGGTTACCACATACGG 57.369 39.130 6.10 0.00 35.80 4.02
2817 2838 4.554960 TCAAATGGTTACCACATACGGA 57.445 40.909 6.10 0.00 35.80 4.69
2818 2839 5.105567 TCAAATGGTTACCACATACGGAT 57.894 39.130 6.10 0.00 35.80 4.18
2819 2840 4.878971 TCAAATGGTTACCACATACGGATG 59.121 41.667 6.10 5.94 35.80 3.51
2821 2842 5.617528 AATGGTTACCACATACGGATGTA 57.382 39.130 14.23 0.00 44.82 2.29
2822 2843 5.818678 ATGGTTACCACATACGGATGTAT 57.181 39.130 14.23 7.46 44.82 2.29
2823 2844 6.921486 ATGGTTACCACATACGGATGTATA 57.079 37.500 14.23 6.38 44.82 1.47
2824 2845 6.921486 TGGTTACCACATACGGATGTATAT 57.079 37.500 14.23 4.37 44.82 0.86
2825 2846 8.598202 ATGGTTACCACATACGGATGTATATA 57.402 34.615 14.23 3.33 44.82 0.86
2826 2847 8.058667 TGGTTACCACATACGGATGTATATAG 57.941 38.462 14.23 0.00 44.82 1.31
2827 2848 7.889600 TGGTTACCACATACGGATGTATATAGA 59.110 37.037 14.23 0.00 44.82 1.98
2828 2849 8.186821 GGTTACCACATACGGATGTATATAGAC 58.813 40.741 14.23 7.65 44.82 2.59
2829 2850 8.733458 GTTACCACATACGGATGTATATAGACA 58.267 37.037 14.23 2.07 44.82 3.41
2830 2851 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2832 2853 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.540267 ACTGAGACAGAGACGAAGGG 58.460 55.000 5.76 0.00 35.18 3.95
232 240 4.098196 GGTAACCTTCCTGCTACTGAGTAG 59.902 50.000 15.12 15.12 38.97 2.57
261 269 1.535437 GGTCGATCGATTTGCTACGGT 60.535 52.381 22.50 0.00 0.00 4.83
289 297 0.037975 CATGGTTTGAACTGCAGGCC 60.038 55.000 19.93 9.66 0.00 5.19
386 394 1.677552 GCGGAGAAGGGTTGGAGAA 59.322 57.895 0.00 0.00 0.00 2.87
434 442 3.186909 GCAAGAGCACGATACATGTGTA 58.813 45.455 9.11 0.00 41.58 2.90
515 523 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
516 524 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
517 525 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
518 526 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
519 527 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
520 528 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
521 529 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
522 530 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
523 531 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
524 532 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
525 533 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
526 534 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
527 535 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
528 536 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
529 537 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
530 538 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
531 539 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
532 540 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
533 541 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
534 542 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
535 543 7.876582 ACTAAGTTAGTACAAAGTTGGGTCATC 59.123 37.037 14.00 0.00 37.23 2.92
536 544 7.742767 ACTAAGTTAGTACAAAGTTGGGTCAT 58.257 34.615 14.00 0.00 37.23 3.06
537 545 7.128234 ACTAAGTTAGTACAAAGTTGGGTCA 57.872 36.000 14.00 0.00 37.23 4.02
550 558 8.248904 TGACCCAACTTTGTACTAAGTTAGTA 57.751 34.615 27.33 17.12 44.33 1.82
551 559 7.128234 TGACCCAACTTTGTACTAAGTTAGT 57.872 36.000 27.33 25.69 44.33 2.24
552 560 8.095169 AGATGACCCAACTTTGTACTAAGTTAG 58.905 37.037 27.33 23.50 44.33 2.34
553 561 7.970102 AGATGACCCAACTTTGTACTAAGTTA 58.030 34.615 27.33 16.34 44.33 2.24
554 562 6.838382 AGATGACCCAACTTTGTACTAAGTT 58.162 36.000 23.96 23.96 46.42 2.66
555 563 6.435292 AGATGACCCAACTTTGTACTAAGT 57.565 37.500 15.68 15.68 39.97 2.24
556 564 9.449719 AAATAGATGACCCAACTTTGTACTAAG 57.550 33.333 14.42 14.42 0.00 2.18
557 565 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
558 566 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
559 567 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
560 568 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
561 569 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
562 570 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
563 571 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
564 572 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
565 573 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
566 574 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
567 575 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
568 576 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
569 577 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
570 578 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
571 579 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
572 580 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
573 581 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
574 582 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
575 583 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
576 584 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
577 585 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
578 586 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
579 587 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
580 588 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
581 589 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
582 590 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
583 591 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
584 592 1.320507 CTAGCTACTCCCTCCGTTCC 58.679 60.000 0.00 0.00 0.00 3.62
585 593 0.669619 GCTAGCTACTCCCTCCGTTC 59.330 60.000 7.70 0.00 0.00 3.95
586 594 0.033405 TGCTAGCTACTCCCTCCGTT 60.033 55.000 17.23 0.00 0.00 4.44
587 595 0.033405 TTGCTAGCTACTCCCTCCGT 60.033 55.000 17.23 0.00 0.00 4.69
588 596 0.671251 CTTGCTAGCTACTCCCTCCG 59.329 60.000 17.23 0.00 0.00 4.63
589 597 0.391228 GCTTGCTAGCTACTCCCTCC 59.609 60.000 17.23 0.00 44.27 4.30
590 598 3.978460 GCTTGCTAGCTACTCCCTC 57.022 57.895 17.23 0.00 44.27 4.30
640 648 4.438880 CCGACAACATCTGTACTACTCCAG 60.439 50.000 0.00 0.00 38.84 3.86
641 649 3.442625 CCGACAACATCTGTACTACTCCA 59.557 47.826 0.00 0.00 38.84 3.86
642 650 3.181489 CCCGACAACATCTGTACTACTCC 60.181 52.174 0.00 0.00 38.84 3.85
643 651 3.734293 GCCCGACAACATCTGTACTACTC 60.734 52.174 0.00 0.00 38.84 2.59
644 652 2.165845 GCCCGACAACATCTGTACTACT 59.834 50.000 0.00 0.00 38.84 2.57
645 653 2.537401 GCCCGACAACATCTGTACTAC 58.463 52.381 0.00 0.00 38.84 2.73
646 654 1.479323 GGCCCGACAACATCTGTACTA 59.521 52.381 0.00 0.00 38.84 1.82
647 655 0.249398 GGCCCGACAACATCTGTACT 59.751 55.000 0.00 0.00 38.84 2.73
648 656 0.036765 TGGCCCGACAACATCTGTAC 60.037 55.000 0.00 0.00 38.84 2.90
649 657 0.908910 ATGGCCCGACAACATCTGTA 59.091 50.000 0.00 0.00 38.84 2.74
650 658 0.677731 CATGGCCCGACAACATCTGT 60.678 55.000 0.00 0.00 42.61 3.41
651 659 1.378882 CCATGGCCCGACAACATCTG 61.379 60.000 0.00 0.00 0.00 2.90
652 660 1.077501 CCATGGCCCGACAACATCT 60.078 57.895 0.00 0.00 0.00 2.90
681 689 2.079158 TGCAAAGAGATTGAAGAGGCG 58.921 47.619 0.00 0.00 41.85 5.52
842 850 4.872691 GGTGAGGTGTCTATCTGTTTCATG 59.127 45.833 0.00 0.00 0.00 3.07
843 851 4.780021 AGGTGAGGTGTCTATCTGTTTCAT 59.220 41.667 0.00 0.00 0.00 2.57
844 852 4.021104 CAGGTGAGGTGTCTATCTGTTTCA 60.021 45.833 0.00 0.00 0.00 2.69
845 853 4.220821 TCAGGTGAGGTGTCTATCTGTTTC 59.779 45.833 0.00 0.00 0.00 2.78
1126 1134 0.865769 GTTATTATGAGGCACGCCCG 59.134 55.000 3.95 0.00 39.21 6.13
1172 1180 2.547211 GCATCCAGGATTTCACTCATCG 59.453 50.000 0.00 0.00 0.00 3.84
1178 1186 5.189180 AGAAGTAAGCATCCAGGATTTCAC 58.811 41.667 0.00 0.00 0.00 3.18
1186 1194 2.768527 TCCCAGAGAAGTAAGCATCCAG 59.231 50.000 0.00 0.00 0.00 3.86
1242 1250 0.165944 GGTCTTTGATGTCGTTGCCG 59.834 55.000 0.00 0.00 0.00 5.69
1273 1281 0.249120 CTAGACATGCGTTGGACCCA 59.751 55.000 0.00 0.00 0.00 4.51
1708 1716 3.761897 TCCAACTTGAGGGTTTACCATG 58.238 45.455 0.69 0.00 43.89 3.66
1818 1838 0.311165 GCTATGGCAAGCAGCTCATG 59.689 55.000 14.15 0.00 44.79 3.07
1864 1884 4.256920 ACTTCTCATTGATTCGAACCCTG 58.743 43.478 0.00 0.00 0.00 4.45
1923 1943 4.019174 AGTGTCCATTATTGCTGGAAAGG 58.981 43.478 0.00 0.00 44.19 3.11
1961 1981 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
1962 1982 4.079787 TCCAATCCTATGAACCAAAGGAGG 60.080 45.833 0.00 0.00 42.53 4.30
1963 1983 5.116084 TCCAATCCTATGAACCAAAGGAG 57.884 43.478 0.00 0.00 42.53 3.69
1964 1984 5.528600 TTCCAATCCTATGAACCAAAGGA 57.471 39.130 0.00 0.00 43.38 3.36
1965 1985 6.603940 TTTTCCAATCCTATGAACCAAAGG 57.396 37.500 0.00 0.00 0.00 3.11
1966 1986 7.839907 TGATTTTCCAATCCTATGAACCAAAG 58.160 34.615 0.00 0.00 38.50 2.77
1967 1987 7.789202 TGATTTTCCAATCCTATGAACCAAA 57.211 32.000 0.00 0.00 38.50 3.28
1968 1988 7.976414 ATGATTTTCCAATCCTATGAACCAA 57.024 32.000 0.00 0.00 38.50 3.67
1969 1989 7.725397 CCTATGATTTTCCAATCCTATGAACCA 59.275 37.037 0.00 0.00 38.50 3.67
1970 1990 7.944554 TCCTATGATTTTCCAATCCTATGAACC 59.055 37.037 0.00 0.00 38.50 3.62
1971 1991 8.924511 TCCTATGATTTTCCAATCCTATGAAC 57.075 34.615 0.00 0.00 38.50 3.18
1976 1996 9.405369 TCCTATTCCTATGATTTTCCAATCCTA 57.595 33.333 0.00 0.00 38.50 2.94
1977 1997 8.293027 TCCTATTCCTATGATTTTCCAATCCT 57.707 34.615 0.00 0.00 38.50 3.24
1978 1998 8.940397 TTCCTATTCCTATGATTTTCCAATCC 57.060 34.615 0.00 0.00 38.50 3.01
1980 2000 9.942526 ACTTTCCTATTCCTATGATTTTCCAAT 57.057 29.630 0.00 0.00 0.00 3.16
1981 2001 9.408648 GACTTTCCTATTCCTATGATTTTCCAA 57.591 33.333 0.00 0.00 0.00 3.53
1982 2002 8.556589 TGACTTTCCTATTCCTATGATTTTCCA 58.443 33.333 0.00 0.00 0.00 3.53
1983 2003 8.980481 TGACTTTCCTATTCCTATGATTTTCC 57.020 34.615 0.00 0.00 0.00 3.13
1987 2007 9.621239 TCCTATGACTTTCCTATTCCTATGATT 57.379 33.333 0.00 0.00 0.00 2.57
1988 2008 9.621239 TTCCTATGACTTTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
1989 2009 9.447279 TTTCCTATGACTTTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
1992 2012 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
1993 2013 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
1994 2014 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
1996 2016 9.790344 CATCTCATTTCCTATGACTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
1997 2017 9.163894 TCATCTCATTTCCTATGACTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
1998 2018 8.424918 GTCATCTCATTTCCTATGACTTTCCTA 58.575 37.037 0.00 0.00 43.07 2.94
1999 2019 7.092712 TGTCATCTCATTTCCTATGACTTTCCT 60.093 37.037 13.59 0.00 45.40 3.36
2000 2020 7.050377 TGTCATCTCATTTCCTATGACTTTCC 58.950 38.462 13.59 0.00 45.40 3.13
2001 2021 8.557864 CATGTCATCTCATTTCCTATGACTTTC 58.442 37.037 13.59 0.00 45.40 2.62
2002 2022 7.013083 GCATGTCATCTCATTTCCTATGACTTT 59.987 37.037 13.59 1.75 45.40 2.66
2003 2023 6.485984 GCATGTCATCTCATTTCCTATGACTT 59.514 38.462 13.59 6.42 45.40 3.01
2004 2024 5.996513 GCATGTCATCTCATTTCCTATGACT 59.003 40.000 13.59 0.19 45.40 3.41
2005 2025 5.761726 TGCATGTCATCTCATTTCCTATGAC 59.238 40.000 7.23 7.23 45.40 3.06
2006 2026 5.932455 TGCATGTCATCTCATTTCCTATGA 58.068 37.500 0.00 0.00 0.00 2.15
2007 2027 6.819397 ATGCATGTCATCTCATTTCCTATG 57.181 37.500 0.00 0.00 0.00 2.23
2020 2040 5.183331 GCATAGGATTTGAGATGCATGTCAT 59.817 40.000 25.41 13.07 43.36 3.06
2021 2041 4.517832 GCATAGGATTTGAGATGCATGTCA 59.482 41.667 21.70 21.70 43.36 3.58
2022 2042 5.044428 GCATAGGATTTGAGATGCATGTC 57.956 43.478 16.63 16.63 43.36 3.06
2040 2060 9.224267 GCATCTCTTTTTCTATTCCTATGCATA 57.776 33.333 6.20 6.20 36.79 3.14
2041 2061 7.176340 GGCATCTCTTTTTCTATTCCTATGCAT 59.824 37.037 3.79 3.79 38.14 3.96
2042 2062 6.488006 GGCATCTCTTTTTCTATTCCTATGCA 59.512 38.462 0.00 0.00 38.14 3.96
2043 2063 6.072230 GGGCATCTCTTTTTCTATTCCTATGC 60.072 42.308 0.00 0.00 36.22 3.14
2044 2064 7.230027 AGGGCATCTCTTTTTCTATTCCTATG 58.770 38.462 0.00 0.00 0.00 2.23
2045 2065 7.399674 AGGGCATCTCTTTTTCTATTCCTAT 57.600 36.000 0.00 0.00 0.00 2.57
2046 2066 6.831664 AGGGCATCTCTTTTTCTATTCCTA 57.168 37.500 0.00 0.00 0.00 2.94
2047 2067 5.723860 AGGGCATCTCTTTTTCTATTCCT 57.276 39.130 0.00 0.00 0.00 3.36
2048 2068 6.378280 TCAAAGGGCATCTCTTTTTCTATTCC 59.622 38.462 0.00 0.00 32.72 3.01
2049 2069 7.396540 TCAAAGGGCATCTCTTTTTCTATTC 57.603 36.000 0.00 0.00 32.72 1.75
2050 2070 7.968014 ATCAAAGGGCATCTCTTTTTCTATT 57.032 32.000 0.00 0.00 32.72 1.73
2051 2071 7.616935 TGAATCAAAGGGCATCTCTTTTTCTAT 59.383 33.333 5.65 0.00 32.72 1.98
2052 2072 6.947733 TGAATCAAAGGGCATCTCTTTTTCTA 59.052 34.615 5.65 0.00 32.72 2.10
2053 2073 5.776716 TGAATCAAAGGGCATCTCTTTTTCT 59.223 36.000 5.65 0.00 32.72 2.52
2054 2074 5.866092 GTGAATCAAAGGGCATCTCTTTTTC 59.134 40.000 0.00 0.00 32.72 2.29
2055 2075 5.305128 TGTGAATCAAAGGGCATCTCTTTTT 59.695 36.000 0.00 0.00 32.72 1.94
2056 2076 4.834496 TGTGAATCAAAGGGCATCTCTTTT 59.166 37.500 0.00 0.00 32.72 2.27
2057 2077 4.219288 GTGTGAATCAAAGGGCATCTCTTT 59.781 41.667 0.00 0.00 35.09 2.52
2058 2078 3.760684 GTGTGAATCAAAGGGCATCTCTT 59.239 43.478 0.00 0.00 0.00 2.85
2059 2079 3.350833 GTGTGAATCAAAGGGCATCTCT 58.649 45.455 0.00 0.00 0.00 3.10
2060 2080 2.424956 GGTGTGAATCAAAGGGCATCTC 59.575 50.000 0.00 0.00 0.00 2.75
2061 2081 2.225091 TGGTGTGAATCAAAGGGCATCT 60.225 45.455 0.00 0.00 0.00 2.90
2062 2082 2.170166 TGGTGTGAATCAAAGGGCATC 58.830 47.619 0.00 0.00 0.00 3.91
2063 2083 2.307496 TGGTGTGAATCAAAGGGCAT 57.693 45.000 0.00 0.00 0.00 4.40
2064 2084 2.307496 ATGGTGTGAATCAAAGGGCA 57.693 45.000 0.00 0.00 0.00 5.36
2065 2085 2.689983 CCTATGGTGTGAATCAAAGGGC 59.310 50.000 0.00 0.00 0.00 5.19
2066 2086 4.235079 TCCTATGGTGTGAATCAAAGGG 57.765 45.455 0.00 0.00 0.00 3.95
2067 2087 6.780457 AAATCCTATGGTGTGAATCAAAGG 57.220 37.500 0.00 0.00 0.00 3.11
2089 2109 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
2090 2110 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
2091 2111 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
2092 2112 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
2093 2113 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
2094 2114 5.882557 ACAAACATTAGCCTAGACTCAATGG 59.117 40.000 0.00 0.00 32.20 3.16
2095 2115 6.992063 ACAAACATTAGCCTAGACTCAATG 57.008 37.500 0.00 0.00 33.75 2.82
2096 2116 8.409358 AAAACAAACATTAGCCTAGACTCAAT 57.591 30.769 0.00 0.00 0.00 2.57
2097 2117 7.040686 GGAAAACAAACATTAGCCTAGACTCAA 60.041 37.037 0.00 0.00 0.00 3.02
2098 2118 6.430000 GGAAAACAAACATTAGCCTAGACTCA 59.570 38.462 0.00 0.00 0.00 3.41
2099 2119 6.655425 AGGAAAACAAACATTAGCCTAGACTC 59.345 38.462 0.00 0.00 0.00 3.36
2100 2120 6.543735 AGGAAAACAAACATTAGCCTAGACT 58.456 36.000 0.00 0.00 0.00 3.24
2101 2121 6.819397 AGGAAAACAAACATTAGCCTAGAC 57.181 37.500 0.00 0.00 0.00 2.59
2102 2122 8.325787 TCATAGGAAAACAAACATTAGCCTAGA 58.674 33.333 0.00 0.00 31.03 2.43
2103 2123 8.506168 TCATAGGAAAACAAACATTAGCCTAG 57.494 34.615 0.00 0.00 31.03 3.02
2104 2124 8.871629 TTCATAGGAAAACAAACATTAGCCTA 57.128 30.769 0.00 0.00 0.00 3.93
2105 2125 7.775053 TTCATAGGAAAACAAACATTAGCCT 57.225 32.000 0.00 0.00 0.00 4.58
2106 2126 8.872845 CATTTCATAGGAAAACAAACATTAGCC 58.127 33.333 6.65 0.00 45.52 3.93
2107 2127 9.423061 ACATTTCATAGGAAAACAAACATTAGC 57.577 29.630 6.65 0.00 45.52 3.09
2109 2129 9.703892 CCACATTTCATAGGAAAACAAACATTA 57.296 29.630 6.65 0.00 45.52 1.90
2110 2130 8.428063 TCCACATTTCATAGGAAAACAAACATT 58.572 29.630 6.65 0.00 45.52 2.71
2111 2131 7.961351 TCCACATTTCATAGGAAAACAAACAT 58.039 30.769 6.65 0.00 45.52 2.71
2112 2132 7.353414 TCCACATTTCATAGGAAAACAAACA 57.647 32.000 6.65 0.00 45.52 2.83
2113 2133 6.868339 CCTCCACATTTCATAGGAAAACAAAC 59.132 38.462 6.65 0.00 45.52 2.93
2114 2134 6.780031 TCCTCCACATTTCATAGGAAAACAAA 59.220 34.615 6.65 0.00 45.52 2.83
2115 2135 6.310941 TCCTCCACATTTCATAGGAAAACAA 58.689 36.000 6.65 0.00 45.52 2.83
2116 2136 5.886609 TCCTCCACATTTCATAGGAAAACA 58.113 37.500 6.65 0.00 45.52 2.83
2117 2137 7.229506 CCTATCCTCCACATTTCATAGGAAAAC 59.770 40.741 6.65 0.00 45.52 2.43
2118 2138 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
2119 2139 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
2120 2140 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
2121 2141 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
2122 2142 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
2123 2143 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
2124 2144 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
2125 2145 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
2126 2146 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
2127 2147 6.488344 GGAATTCTTCCTATCCTCCACATTTC 59.512 42.308 5.23 0.00 46.57 2.17
2128 2148 6.368805 GGAATTCTTCCTATCCTCCACATTT 58.631 40.000 5.23 0.00 46.57 2.32
2129 2149 5.946486 GGAATTCTTCCTATCCTCCACATT 58.054 41.667 5.23 0.00 46.57 2.71
2130 2150 5.574970 GGAATTCTTCCTATCCTCCACAT 57.425 43.478 5.23 0.00 46.57 3.21
2150 2170 7.037297 GGAATGAAATCCTATTCCTATGGAGGA 60.037 40.741 8.37 0.00 45.66 3.71
2151 2171 7.115414 GGAATGAAATCCTATTCCTATGGAGG 58.885 42.308 8.37 0.00 45.66 4.30
2165 2185 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
2166 2186 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
2167 2187 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
2168 2188 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
2169 2189 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
2170 2190 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
2171 2191 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
2172 2192 5.006386 CAGAGCTCTTTGGTTTGTAGGAAT 58.994 41.667 15.27 0.00 0.00 3.01
2173 2193 4.102524 TCAGAGCTCTTTGGTTTGTAGGAA 59.897 41.667 15.27 0.00 31.30 3.36
2174 2194 3.646162 TCAGAGCTCTTTGGTTTGTAGGA 59.354 43.478 15.27 0.20 31.30 2.94
2175 2195 4.008074 TCAGAGCTCTTTGGTTTGTAGG 57.992 45.455 15.27 0.00 31.30 3.18
2176 2196 4.453819 CCTTCAGAGCTCTTTGGTTTGTAG 59.546 45.833 15.27 5.08 31.30 2.74
2177 2197 4.102524 TCCTTCAGAGCTCTTTGGTTTGTA 59.897 41.667 15.27 0.00 31.30 2.41
2178 2198 3.117888 TCCTTCAGAGCTCTTTGGTTTGT 60.118 43.478 15.27 0.00 31.30 2.83
2179 2199 3.480470 TCCTTCAGAGCTCTTTGGTTTG 58.520 45.455 15.27 1.50 0.00 2.93
2180 2200 3.864789 TCCTTCAGAGCTCTTTGGTTT 57.135 42.857 15.27 0.00 0.00 3.27
2181 2201 3.864789 TTCCTTCAGAGCTCTTTGGTT 57.135 42.857 15.27 0.00 0.00 3.67
2182 2202 4.379302 AATTCCTTCAGAGCTCTTTGGT 57.621 40.909 15.27 0.00 0.00 3.67
2183 2203 5.718724 AAAATTCCTTCAGAGCTCTTTGG 57.281 39.130 15.27 15.93 0.00 3.28
2184 2204 6.155136 GGAAAAATTCCTTCAGAGCTCTTTG 58.845 40.000 15.27 4.87 46.57 2.77
2185 2205 6.338214 GGAAAAATTCCTTCAGAGCTCTTT 57.662 37.500 15.27 1.02 46.57 2.52
2186 2206 5.973899 GGAAAAATTCCTTCAGAGCTCTT 57.026 39.130 15.27 0.00 46.57 2.85
2228 2248 9.817809 GGTTTGGAGGAATTTTATAGGATTTTC 57.182 33.333 0.00 0.00 0.00 2.29
2229 2249 9.332713 TGGTTTGGAGGAATTTTATAGGATTTT 57.667 29.630 0.00 0.00 0.00 1.82
2230 2250 8.909423 TGGTTTGGAGGAATTTTATAGGATTT 57.091 30.769 0.00 0.00 0.00 2.17
2231 2251 8.909423 TTGGTTTGGAGGAATTTTATAGGATT 57.091 30.769 0.00 0.00 0.00 3.01
2232 2252 8.909423 TTTGGTTTGGAGGAATTTTATAGGAT 57.091 30.769 0.00 0.00 0.00 3.24
2233 2253 7.398904 CCTTTGGTTTGGAGGAATTTTATAGGA 59.601 37.037 0.00 0.00 32.11 2.94
2234 2254 7.398904 TCCTTTGGTTTGGAGGAATTTTATAGG 59.601 37.037 0.00 0.00 36.67 2.57
2235 2255 8.361169 TCCTTTGGTTTGGAGGAATTTTATAG 57.639 34.615 0.00 0.00 36.67 1.31
2236 2256 8.361169 CTCCTTTGGTTTGGAGGAATTTTATA 57.639 34.615 0.00 0.00 44.44 0.98
2237 2257 7.244886 CTCCTTTGGTTTGGAGGAATTTTAT 57.755 36.000 0.00 0.00 44.44 1.40
2238 2258 6.664428 CTCCTTTGGTTTGGAGGAATTTTA 57.336 37.500 0.00 0.00 44.44 1.52
2239 2259 5.551305 CTCCTTTGGTTTGGAGGAATTTT 57.449 39.130 0.00 0.00 44.44 1.82
2246 2266 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2247 2267 0.560688 AAGGCCTCCTTTGGTTTGGA 59.439 50.000 5.23 0.00 41.69 3.53
2248 2268 2.171003 CTAAGGCCTCCTTTGGTTTGG 58.829 52.381 5.23 0.00 41.69 3.28
2249 2269 2.876581 ACTAAGGCCTCCTTTGGTTTG 58.123 47.619 5.23 0.00 41.69 2.93
2250 2270 3.656264 ACTACTAAGGCCTCCTTTGGTTT 59.344 43.478 5.23 0.00 41.69 3.27
2251 2271 3.257578 ACTACTAAGGCCTCCTTTGGTT 58.742 45.455 5.23 0.00 41.69 3.67
2252 2272 2.917205 ACTACTAAGGCCTCCTTTGGT 58.083 47.619 5.23 0.00 41.69 3.67
2253 2273 3.370633 GGAACTACTAAGGCCTCCTTTGG 60.371 52.174 5.23 0.00 41.69 3.28
2254 2274 3.263425 TGGAACTACTAAGGCCTCCTTTG 59.737 47.826 5.23 4.60 41.69 2.77
2255 2275 3.527937 TGGAACTACTAAGGCCTCCTTT 58.472 45.455 5.23 0.00 41.69 3.11
2256 2276 3.200958 TGGAACTACTAAGGCCTCCTT 57.799 47.619 5.23 3.40 46.63 3.36
2257 2277 2.942604 TGGAACTACTAAGGCCTCCT 57.057 50.000 5.23 0.00 33.87 3.69
2258 2278 3.454812 TGAATGGAACTACTAAGGCCTCC 59.545 47.826 5.23 0.00 0.00 4.30
2259 2279 4.755266 TGAATGGAACTACTAAGGCCTC 57.245 45.455 5.23 0.00 0.00 4.70
2260 2280 5.717119 ATTGAATGGAACTACTAAGGCCT 57.283 39.130 0.00 0.00 0.00 5.19
2261 2281 7.875327 TTAATTGAATGGAACTACTAAGGCC 57.125 36.000 0.00 0.00 0.00 5.19
2262 2282 9.736023 CAATTAATTGAATGGAACTACTAAGGC 57.264 33.333 21.35 0.00 40.14 4.35
2263 2283 9.736023 GCAATTAATTGAATGGAACTACTAAGG 57.264 33.333 28.33 0.00 40.14 2.69
2267 2287 9.686683 AGTAGCAATTAATTGAATGGAACTACT 57.313 29.630 28.33 25.08 40.14 2.57
2458 2478 5.076182 TGATTTGTGGGATCAGCTAAAACA 58.924 37.500 0.00 0.00 0.00 2.83
2760 2781 7.427989 AGACAAATATTTAGGAACGGAGGTA 57.572 36.000 0.00 0.00 0.00 3.08
2761 2782 6.309389 AGACAAATATTTAGGAACGGAGGT 57.691 37.500 0.00 0.00 0.00 3.85
2762 2783 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2763 2784 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2764 2785 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2765 2786 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2778 2799 9.354673 ACCATTTGAAATCTCTAGAAAGACAAA 57.645 29.630 0.00 4.41 0.00 2.83
2779 2800 8.924511 ACCATTTGAAATCTCTAGAAAGACAA 57.075 30.769 0.00 0.00 0.00 3.18
2780 2801 8.924511 AACCATTTGAAATCTCTAGAAAGACA 57.075 30.769 0.00 0.00 0.00 3.41
2782 2803 9.449719 GGTAACCATTTGAAATCTCTAGAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
2783 2804 9.231297 TGGTAACCATTTGAAATCTCTAGAAAG 57.769 33.333 0.00 0.00 0.00 2.62
2784 2805 9.010029 GTGGTAACCATTTGAAATCTCTAGAAA 57.990 33.333 0.00 0.00 35.28 2.52
2785 2806 8.160765 TGTGGTAACCATTTGAAATCTCTAGAA 58.839 33.333 0.00 0.00 35.28 2.10
2786 2807 7.685481 TGTGGTAACCATTTGAAATCTCTAGA 58.315 34.615 0.00 0.00 35.28 2.43
2787 2808 7.921786 TGTGGTAACCATTTGAAATCTCTAG 57.078 36.000 0.00 0.00 35.28 2.43
2788 2809 9.391006 GTATGTGGTAACCATTTGAAATCTCTA 57.609 33.333 0.00 0.00 35.28 2.43
2789 2810 7.065803 CGTATGTGGTAACCATTTGAAATCTCT 59.934 37.037 0.00 0.00 35.28 3.10
2790 2811 7.186804 CGTATGTGGTAACCATTTGAAATCTC 58.813 38.462 0.00 0.00 35.28 2.75
2791 2812 6.094881 CCGTATGTGGTAACCATTTGAAATCT 59.905 38.462 0.00 0.00 35.28 2.40
2792 2813 6.094325 TCCGTATGTGGTAACCATTTGAAATC 59.906 38.462 0.00 0.00 35.28 2.17
2793 2814 5.946972 TCCGTATGTGGTAACCATTTGAAAT 59.053 36.000 0.00 0.00 35.28 2.17
2794 2815 5.314529 TCCGTATGTGGTAACCATTTGAAA 58.685 37.500 0.00 0.00 35.28 2.69
2795 2816 4.907809 TCCGTATGTGGTAACCATTTGAA 58.092 39.130 0.00 0.00 35.28 2.69
2796 2817 4.554960 TCCGTATGTGGTAACCATTTGA 57.445 40.909 0.00 0.00 35.28 2.69
2797 2818 4.638421 ACATCCGTATGTGGTAACCATTTG 59.362 41.667 0.00 0.00 44.79 2.32
2798 2819 4.850680 ACATCCGTATGTGGTAACCATTT 58.149 39.130 0.00 0.00 44.79 2.32
2799 2820 4.497291 ACATCCGTATGTGGTAACCATT 57.503 40.909 0.00 0.00 44.79 3.16
2800 2821 5.818678 ATACATCCGTATGTGGTAACCAT 57.181 39.130 3.56 0.00 45.99 3.55
2801 2822 6.921486 ATATACATCCGTATGTGGTAACCA 57.079 37.500 3.56 0.00 45.99 3.67
2802 2823 8.186821 GTCTATATACATCCGTATGTGGTAACC 58.813 40.741 3.56 0.00 45.99 2.85
2803 2824 8.733458 TGTCTATATACATCCGTATGTGGTAAC 58.267 37.037 3.56 0.00 45.99 2.50
2804 2825 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
2806 2827 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.