>input_sequence_67074
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-----------------------------------------------ATGGCTGGTGGGGTTGAATCTCAGTGGTCCATA
CGTGTGTTTGAAAGATTTGAGCGTTCTGTGGTGCGACTGAACCATGGAGGTCTTTTTCTTGGCACCGGCTTCGTTGTTTA
CTGGGACGAGTCCCGGGCGTGCCTCATAATAACATGCCATCATGTTGTTTCGCGTGTACCGATGAGTGAAATCCTGGATG
CTTACTTCTCTGGGAACACTATACCATCTGCTGTGCGCATAGTTCGTCGCGGCAACGACATCAAAGACCTTGCTTTGCTT
TGGGTCCAACGCATGTCTAGCCAAGTCACCAGACCTCCCGTTGTTATGGACTTCTTCCAGCATCCAGTGGCACCGGGATG
GGACGTTGTTCTGCTTGGCTATAACGTTTTGCGTAATAATTTTATCCTGGAGCCCTCAACCTGGTCTGGCCGAATCATGC
AATTAACCTGCTTATTACTCCTACTATTCAATTCCCTTTTACCTCTGCATGTCATGCCTGGGTTGAGCTAGCTAATTGTT
GTCTGTTTAATGCAGTTCCCCGTCAACCAATACACATATCAAATATAGTTGCACAAGCACTGGAGGCATGTCTGGGTCAC
CTATTGTCCTGGCAGGAGTAAACAAAGTCGTTGGGGTGCATTTCATGAGCAGTGGATCGACTGGGTATGCGATTTGCACC
CAAGCTATAAGAGAATACTTAGAAGAATATTTACACATGGTAAACCCTCAAGTTGGAATACGATTAATTTTGGTAGAACA
TTAGGGTATAATGATTTTTTTTGCT------------TATTTATTTCATATATTTGCTATAGGACAACCTATCGATCCAT
GAGCTGCTTGCCATAGCTGCTGAAGCAACATGA-----------------------------------------------
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>chr3A_1_TraesCS3A01G079800
AGAGGGAATCTCGCCGGCCGGCACACATCTCCCTAATGCCCATCCACCCGTCTCCATCCCAATAATGCACCCTTCGTCTC
TGTCTCAGTAGTGCTAGCAGCTCCGTCCCTGACATCTC-------TCCCAGCCGGCTCTGCGCCACGGCATTCCCGTCCG
GCCGCCGCCAACGCGCGCCTCCGGCGATTGTGTGCCGGTAAGTCCCCGCCCCTGTATGCCTAATCCATGTGCGTAGTCAC
TACTCAGTAGCAGGAAGGTTACCCAGTCACCGTAGCAAATCGATCGACCAGGACCTGGCCTGCAGTTCAAACCATGGACG
ACCATGGCATGGCACCGCTCCTCACTGACAGAGGACGCGCCGTGAGCGCCCCCGCGCGTGCTCCCCTGCCCCCTTCTCCA
ACCCTTCTCCGCCCGCACTTCAGATCTAGGCATCTAGCCCATACACATGTATCGTGCTCTTGCCAAGTCGCCGGCTTTGG
TGCCCTTGCCAAGTCGCCGGCTTTGCCATGTCAGTAGAAGCTACTCCCTCCGTTCCAAAATAGATGACCCAACTTTGTAC
TAACTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAGCTAGCAAGCACAAGCTGCTACACCCTAGCCTAG
ATAGTCGCTGGAGTAGTACAGATGTTGTCGGGCCATGGGCAAGGTGTCCGCCTCTTCAATCTCTTTGCAACCAAATGAAG
CATTCGCTGCTTTTCGCTAACCACGACATGCATGGTGTCCGAACAAGGAGTTACCAGGAGGCTACATCTGCTAATTAATC
AGAAACATAGTGTCTAATTCTTCCGATCCTTCCTGTTTTCCCATCCATGCATGAAACAGATAGACACCTCACCTGAATTC
AATAGATATCTGTATGTACACTACTTTTACTACTAATTGTACGTACATCATTCATGGATGCTAATTTGATGCATCGGTTG
TTTGCTACTTCTGGTTTTGTTACAGGTTCACACACGCAGACGCAGACATGGCTGGTGGGGTTGAATCTCAGTGGTCCATA
CGTGTGTTTGAAAGATTTGAGCGTTCTGTGGTGCGACTGAACCATGGAGGTCTTTTTCTTGGCACCGGCTTCGTTGTTTA
CTGGGACGAGTCCCGGGCGTGCCTCATAATAACATGCCATCATGTTGTTTCGCGTGTACCGATGAGTGAAATCCTGGATG
CTTACTTCTCTGGGAACACTATACCATCTGCTGTGCGCATAGTTCGTCGCGGCAACGACATCAAAGACCTTGCTTTGCTT
TGGGTCCAACGCATGTCTAGCCAAGTCACCAGACCTCCCGTTGTTATGGACTTCTTCCAGCATCCAGTGGCACCGGGATG
GGACGTTGTTCTGCTTGGCTATAACGTTTTGCGTAATAATTTTATCCTGGAGCCCTCAACCTGGTCTGGCCGAATCATGC
AATTAACCTGCTTATTACTCCTACTATTCAATTCCCTTTTACCTCTGCATGTCATGCCTGGGTTGAGCTAGCTAATTGTT
GTCTGTTTAATGCAGTTCCCCGTCAACCAATACACATATCAAATATAGTTGCACAAGCACTGGAGGCATGTCTGGGTCAC
CTATTGTCCTGGCAGGAGTAAACAAAGTCGTTGGGGTGCATTTCATGAGCAGTGGATCGACTGGGTATGCGATTTGCACC
CAAGCTATAAGAGAATACTTAGAAGAATATTTACACATGGTAAACCCTCAAGTTGGAATACGATTAATTTTGGTAGAACA
TTAGGGTATAATGATTTTTTTTGCT------------TATTTATTTCATATATTTGCTATAGGACAACCTATCGATCCAT
GAGCTGCTTGCCATAGCTGCTGAAGCAACATGAAGCAGTGCAACAGGGTTCGAATCAATGAGAAGTTAGCTAGGTAAATG
ATGATCTCTTTCCCAAAATGCTCCTTTCCAGCAATAATGGACACTTAGATACTTACTTAGGCCTCCTTTGGTTCATAGGA
TTGGAAAATCATAGGAATAGGAAAGTCATAGGAAATGAGATGACATGCATCTCAAATCCTATGCATAGGAATAGAAAAAG
AGATGCCCTTTGATTCACACCATAGGATTTTTTCCATTGAGTCTAGGCTAATGTTTGTTTTCCTATGAAATGTGGAGGAT
AGGAAGAATTCCTCCATAGGAATAGGATTTCATTCCTACAAACCAAAGAGCTCTGAAGGAATTTTTCCTATAGAAATCCT
ATCCTATGAAAATCCTATAAAATTCCTCCAAACCAAAGGAGGCCTTAGTAGTTCCATTCAATTAATTGCTACTTCGTAGT
AGCATTGTAGTAGTTGAGATATTTCTTCCCAATGACTCCTTTGCACTAGGATTGAACTAGAATTTCCTGTTGACTGCTCT
TAGGCATATTCATATGCTATTTTTATGGCACAACCAAATAAAATTTTAATTGTGGTACGGTATCAATCCTACGTTTATGT
TTTAGCTGATCCCACAAATCAAGGAGTCTTGCATACTTCGCCGCAAAAAAAGGATCGTATACTAATTTAGTTGATGTACC
AGCATCTCTTTGCAAGTCAAGAAAATAAGCAAAAACATGCACTCCATTTTGTAAGTTAATATGAGACCTATATAAGTGGT
CATGCATATGCCTTGAACATGAGTATAATATATACTTAGCTGTGAA-AAAATAGCATCATTATATTCTTACATTGGACTG
TACAGTTGTACTTTCATAAAATTTACTCTTTAATTAATCCCAAATTTTATTAGTTTGTACTACCTCCGTTCCTAAATATT
TGTCTTTCTAGAGATTTCAAATGGTTACCACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCA
>chr3D_1
AGAGGGAATCTCGCCGGCCGGCACACATCTCCCTAATGCCCATCCACCCGTCTCCATCCCAATAATGCATCCTTCGTCTC
TGTCTCAGTAGTGCTAGCAGCTCCGTCCCTGACATCTCTCCCAGGTCCCAGCCGGCTCTGCGCCACGGCATTCCCGTCCG
GCCGCCGCCAACGCGCGCCTCCGGCGATTGTGTGCCGGTAAGTCCCCGCCCCTGTATGCCTAATCCATGTGCGTAGTCAG
TACTCCGTAGCAGGAAGGTTACCCAGTCGCCGTAGCAAATCGATCGACCAGGACCTAGCCTGCAGTTCAAACCATGGACG
ACCATGGCATGGCACCGCTCCTCACTGAGAAAGGACCCGCCGTGAGCGCCCCCGCGCGTGCTCCCCTGCCCCCCTCTCCA
ACCCTTCTCCGCCCGCACTTCAGATCTAGGCATCTAGCCCACACACATGTATCGTGCTCTTGCCAAGTCGCCGGCTTTGG
TGCCCTTGCCAAGTCGCCGGCTTTGCCATGTCAGTAGAAGCT--------------------------------------
---------------------------------------------AGCTAGCAAGCACAAGCTGCTACACCCTAGCCTAG
ATAGTCG-------------GATGTTGTCGGGCCATGGGCAAGGTGTCTGCCTCTTCAATCTCTTTGCAACCAAATGAAG
CATTCGCTGCTTTTCGCTAACCACGACATGCATGGTGTCCGAACAAGGAGTTACCAGGAGGCTACATCTGCTAATTAATC
AGAAACATAGTGTCTAATTCTTCCGATCCTTCCTGTTTTCCCATCCATG----AAACAGATAGACACCTCACCTGAATTC
AATAGATATCTGTATGTACACTACTTTTACTACTAATTGTACGTACATCATTCATGGATGCTAATTTGATGCATCGGTTG
TTTGCTACTTCTGGTTTTGTTACAGGTTCACACACGCAGACGCAGACATGGCTGGTGGGGTTGAATCTCAGTGGTCCATA
CGTGTGTTTGAAAGATTTGAGCGTTCTGTGGTGCGACTGAACCATGGAGGTCTTTTTCTTGGCACCGGCTTCGTTGTTTA
CTGGGACGAGTCCGGGGCGTGCCTCATAATAACATGCCATCATGTTGTTTCGCGTGTACGGATGAATGAAATCGTGGATG
CTTACTTCTCTGGGAACACTATACCATCTGCTGTGCGCATAGTTCGTCGTGGCAACGACATCAAAGACCTTGCTTTGCTT
CGGGTCCAACGCATGTCTAGCCAAGTCACCAGACCTCCCGTTGTTATGGACTTCTTCCAGCATCCAGTGGCACCGGGATG
GGACGTTGTTCTGCTTGGCTATAACGTTTTGCGTAATAATTTTATCCTGGAGCCCTCAACCTGGTCTGGCCGAATCATGT
AATTAACCTGCTTATTACTCCTACTATTCAATTCCCTTTTACCTCTGCATGTCATGCCTGGGTTGAGCTAGCTAATTGTT
GTCTGTTTAATGCAGTTCCCCGTCAACCAATACACATATCAAATATAGTTGCACAAGCACTGGAGGCATGTCTGGGTCAC
CTATTGTCCTGGCAGGAGTAAACAAAGTCGTTGGGGTGCATTTCATGAGCAGTGGATCGACTGGGTATGCGATTTGCACC
GAAGCTATAAGAGAATACTTAGAAGAATATTTACAAATGGTAAACCCTCAAGTTGGGATACGATTAATTTTGGTAGAACA
TTAGGGTATAATGATTTTTTTGCTGCAGTCTCAAACATATTTATTTCATATATTTGCTATAGGACAACCTATCGATCGAT
GAGCTGCTTGTCATAGCTGCTGAAGCAACATGAAGCAGTGCAAGAGGGTTCGAATCAATGAGAAGTTAGCTAGGTAAATG
ATGATCTCTTTCCCAAAATGCTACTTTCCAGCAATAATGGACACTTAGATACTTACTTAG--------------------
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------------------------------------------------TAGTTCCATTCAATTAATTGCTACTTCGTAGT
AGCATTGTAGTAGTTGAGATATTTCTTCCCAATGACTCCTTTGCACTAGGATTGAACTAGAATTTCCTGTTGACTGCTCT
TAGGCATATTCATATGCTATTTTTATGGCACAACCAAATAAAATTTTAATTGTGGTACGGTATCAATCCTACGTTTACGT
TTTAGCTGATCCCACAAATCAAGGAGTCTTGCATACTTCGCCGCAAAAAAAGGATCATATACTAATTTAGTTGATGTACC
AGCATATCTTTGCAAGTCAAGAAAATAAGCAAAAACATGCACTCCATTTTGTCAGTTAATATGAGACCTATATAAGTGGT
CATGCATATGCCTTGAACATGAGTATAATATATACTTAGCTGTGAAAAAAATAGCATCATTATATTCTTACATTGGACTG
TACAGTTGTATTTTCATAAAATTTACTCTTTAATTAATCCCAAATTTTATTAGTTTGTAC--------------------
--------------------------------------------------------------------------
>SNPs
---------------------------------------------------------------------S----------
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-------------------------------------------------------------------------------S
-----S----------------------S---------------------------S-----------------------
----------------------------S-S-----S------------------------------------S------
-----------------------------------------S--------------------------------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
-------SSSSSSSSSSSSS----------------------------S-------------------------------
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-------------------------------------------------SSSS---------------------------
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-------------S---------------------------------------------S-----S-------S------
-------------------------------------------------S------------------------------
S-------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
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S----------------------------------S--------------------S-----------------------
---------------------SSSS----------------------------------------------------S--
----------S--------------------------------S------------------------------------
----------------------S-------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
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-----------------------------------------------------------------------------S--
--------------------------------------------------------S-----------------------
-----S----------------------------------------------S---------------------------
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----------S-------------------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_537
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-------------------------------------AAGCTACTCCCTCCGTTCCA-----------------------
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>reverse_2266
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-------------------------CTCCAAACCAAAGGAGGCCT-----------------------------------
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