Multiple sequence alignment - TraesCS3A01G078700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G078700 chr3A 100.000 5025 0 0 1 5025 50887512 50892536 0.000000e+00 9280.0
1 TraesCS3A01G078700 chr3A 100.000 36 0 0 3316 3351 50890742 50890777 3.250000e-07 67.6
2 TraesCS3A01G078700 chr3A 100.000 36 0 0 3231 3266 50890827 50890862 3.250000e-07 67.6
3 TraesCS3A01G078700 chr3D 92.772 2006 92 24 1332 3311 39386766 39388744 0.000000e+00 2852.0
4 TraesCS3A01G078700 chr3D 93.377 1057 57 7 3389 4434 39388889 39389943 0.000000e+00 1552.0
5 TraesCS3A01G078700 chr3D 90.618 469 30 7 4571 5025 39389874 39390342 1.200000e-170 610.0
6 TraesCS3A01G078700 chr3D 88.627 466 27 13 797 1262 39386319 39386758 1.230000e-150 544.0
7 TraesCS3A01G078700 chr3B 93.101 1725 89 17 1332 3047 62945537 62947240 0.000000e+00 2499.0
8 TraesCS3A01G078700 chr3B 89.937 1272 72 17 1 1262 62944310 62945535 0.000000e+00 1589.0
9 TraesCS3A01G078700 chr3B 93.123 1047 58 11 3413 4454 62947754 62948791 0.000000e+00 1522.0
10 TraesCS3A01G078700 chr3B 89.126 469 31 11 4571 5025 62948709 62949171 2.630000e-157 566.0
11 TraesCS3A01G078700 chr3B 93.976 249 10 2 3046 3291 62947364 62947610 6.140000e-99 372.0
12 TraesCS3A01G078700 chr3B 91.304 46 4 0 3651 3696 76433066 76433021 4.200000e-06 63.9
13 TraesCS3A01G078700 chr7D 76.170 235 26 13 193 425 13019661 13019455 4.140000e-16 97.1
14 TraesCS3A01G078700 chr4D 84.507 71 7 3 206 275 448516702 448516769 3.250000e-07 67.6
15 TraesCS3A01G078700 chr4D 92.500 40 2 1 206 245 390855010 390854972 7.030000e-04 56.5
16 TraesCS3A01G078700 chr6A 91.489 47 0 3 204 250 578072031 578072073 1.510000e-05 62.1
17 TraesCS3A01G078700 chr7A 85.000 60 7 2 193 250 12419962 12419903 5.430000e-05 60.2
18 TraesCS3A01G078700 chr6B 90.698 43 1 2 204 246 651012549 651012588 3.000000e-03 54.7
19 TraesCS3A01G078700 chr5D 88.372 43 5 0 3655 3697 417626600 417626558 9.000000e-03 52.8
20 TraesCS3A01G078700 chr5A 88.372 43 5 0 3655 3697 531082676 531082634 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G078700 chr3A 50887512 50892536 5024 False 3138.4 9280 100.0000 1 5025 3 chr3A.!!$F1 5024
1 TraesCS3A01G078700 chr3D 39386319 39390342 4023 False 1389.5 2852 91.3485 797 5025 4 chr3D.!!$F1 4228
2 TraesCS3A01G078700 chr3B 62944310 62949171 4861 False 1309.6 2499 91.8526 1 5025 5 chr3B.!!$F1 5024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 580 0.176680 TCTCAATCTCTTGGAGGCGC 59.823 55.0 0.00 0.0 32.95 6.53 F
1278 1289 0.180406 ATACTCCGGTGGTCAATGCC 59.820 55.0 8.63 0.0 0.00 4.40 F
1284 1295 0.392863 CGGTGGTCAATGCCATCTGA 60.393 55.0 5.66 0.0 41.08 3.27 F
1457 1472 0.460987 CAAGGCCGGCACAAAAACAA 60.461 50.0 30.85 0.0 0.00 2.83 F
1734 1749 0.463620 GTTGGCCAGACCTTGCAAAA 59.536 50.0 5.11 0.0 40.22 2.44 F
3508 3741 0.040958 GTGCAAGCAACGTCCTTCTG 60.041 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1825 0.400213 TTGGATTGGCAACGGAGTCT 59.600 50.000 0.00 0.00 45.00 3.24 R
2255 2276 0.468226 ACTCGGCACACTTCTTTCCA 59.532 50.000 0.00 0.00 0.00 3.53 R
2955 2976 2.703798 CGCAATCCCCTGTGCAAGG 61.704 63.158 7.69 7.69 46.94 3.61 R
3337 3499 1.709578 TCAGTGTCCAGAGCTGACTT 58.290 50.000 0.00 0.00 34.72 3.01 R
3607 3840 1.440618 TGAACTCTGGGGCAAGGTAA 58.559 50.000 0.00 0.00 0.00 2.85 R
4477 4721 0.031585 ACACTGAACGTTGCTCGCTA 59.968 50.000 5.00 0.00 44.19 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.657419 GACAATCCATTTATTTTCCACAAGATT 57.343 29.630 0.00 0.00 0.00 2.40
161 162 7.034685 TCATAGTGATTGGATGATTTTGCAG 57.965 36.000 0.00 0.00 0.00 4.41
188 189 8.859236 ATCAATACAATGTGATATTCTGGAGG 57.141 34.615 0.00 0.00 32.68 4.30
202 203 2.630098 TCTGGAGGCTATTTCGGATCTG 59.370 50.000 0.00 0.00 0.00 2.90
374 376 0.924090 GGAATAGCAGTGCTTCGTCG 59.076 55.000 25.23 0.00 40.44 5.12
393 395 5.966503 TCGTCGGTGAAACAAACAAAATTAG 59.033 36.000 0.00 0.00 39.98 1.73
395 397 6.037726 GTCGGTGAAACAAACAAAATTAGGT 58.962 36.000 0.00 0.00 39.98 3.08
411 413 6.887626 AATTAGGTGTACCATTTCGTGTTT 57.112 33.333 3.56 0.00 38.89 2.83
421 423 5.474825 ACCATTTCGTGTTTGACTTGTTTT 58.525 33.333 0.00 0.00 0.00 2.43
451 453 4.693566 CAGGTCAAAATGCGTAGGTCTTTA 59.306 41.667 0.00 0.00 0.00 1.85
477 479 5.888412 AAAAGTTTGCGAGCAACATTTAG 57.112 34.783 10.30 0.00 35.46 1.85
481 483 4.455533 AGTTTGCGAGCAACATTTAGATGA 59.544 37.500 10.30 0.00 36.73 2.92
492 494 8.800332 AGCAACATTTAGATGAAAAGAGACATT 58.200 29.630 0.00 0.00 36.73 2.71
494 496 9.565213 CAACATTTAGATGAAAAGAGACATTCC 57.435 33.333 0.00 0.00 36.73 3.01
497 499 7.979444 TTTAGATGAAAAGAGACATTCCGTT 57.021 32.000 0.00 0.00 0.00 4.44
524 526 1.067565 ACTACGAGCCGCATATGATGG 60.068 52.381 6.97 8.47 0.00 3.51
525 527 0.246360 TACGAGCCGCATATGATGGG 59.754 55.000 6.97 5.23 42.27 4.00
534 537 4.615912 GCCGCATATGATGGGTTTATCAAC 60.616 45.833 6.97 0.00 40.21 3.18
562 565 0.681733 GATAGGGCGGCTCAATCTCA 59.318 55.000 9.56 0.00 0.00 3.27
563 566 1.070758 GATAGGGCGGCTCAATCTCAA 59.929 52.381 9.56 0.00 0.00 3.02
564 567 1.131638 TAGGGCGGCTCAATCTCAAT 58.868 50.000 9.56 0.00 0.00 2.57
565 568 0.179034 AGGGCGGCTCAATCTCAATC 60.179 55.000 9.56 0.00 0.00 2.67
566 569 0.179034 GGGCGGCTCAATCTCAATCT 60.179 55.000 9.56 0.00 0.00 2.40
567 570 1.224965 GGCGGCTCAATCTCAATCTC 58.775 55.000 0.00 0.00 0.00 2.75
577 580 0.176680 TCTCAATCTCTTGGAGGCGC 59.823 55.000 0.00 0.00 32.95 6.53
580 583 1.142748 AATCTCTTGGAGGCGCTCG 59.857 57.895 7.64 0.00 0.00 5.03
598 601 1.063806 CGCAGAGTTAGAGTGTGCAC 58.936 55.000 10.75 10.75 37.65 4.57
600 603 1.063806 CAGAGTTAGAGTGTGCACGC 58.936 55.000 22.76 22.76 36.20 5.34
628 631 8.080417 TGTGTTTAGAGTGATGAGTGTAAGTAC 58.920 37.037 0.00 0.00 0.00 2.73
789 796 5.566469 AGTAAAAAGGGTATAGCAACAGCA 58.434 37.500 4.02 0.00 0.00 4.41
805 812 2.360852 CAACTGGAGGCAGGCAGG 60.361 66.667 0.00 0.00 0.00 4.85
912 919 1.561076 CCATCCATCCCAGTGAGAACA 59.439 52.381 0.00 0.00 0.00 3.18
913 920 2.421107 CCATCCATCCCAGTGAGAACAG 60.421 54.545 0.00 0.00 0.00 3.16
914 921 2.325661 TCCATCCCAGTGAGAACAGA 57.674 50.000 0.00 0.00 0.00 3.41
915 922 2.182827 TCCATCCCAGTGAGAACAGAG 58.817 52.381 0.00 0.00 0.00 3.35
1015 1025 4.838152 CCATGGTCACGCCCCTCG 62.838 72.222 2.57 0.00 45.38 4.63
1016 1026 3.770040 CATGGTCACGCCCCTCGA 61.770 66.667 0.00 0.00 41.67 4.04
1161 1171 1.755783 CCATGCCTTCTTCCCCAGC 60.756 63.158 0.00 0.00 0.00 4.85
1183 1193 1.006922 GTGTTCCTGCCTTGCTTGC 60.007 57.895 0.00 0.00 0.00 4.01
1188 1198 1.605738 CCTGCCTTGCTTGCTCCTT 60.606 57.895 0.00 0.00 0.00 3.36
1221 1231 0.596600 GCGTGACCAGTTCGAAGTCA 60.597 55.000 13.06 13.06 38.17 3.41
1223 1233 2.198406 CGTGACCAGTTCGAAGTCAAA 58.802 47.619 17.29 0.00 41.87 2.69
1224 1234 2.605818 CGTGACCAGTTCGAAGTCAAAA 59.394 45.455 17.29 0.00 41.87 2.44
1236 1247 8.846211 AGTTCGAAGTCAAAATATTTTCCTCAA 58.154 29.630 10.53 2.63 0.00 3.02
1253 1264 1.066858 TCAATCTCGTCTGCAAGGTCC 60.067 52.381 0.00 0.00 0.00 4.46
1262 1273 2.866762 GTCTGCAAGGTCCGATTGATAC 59.133 50.000 0.00 0.00 0.00 2.24
1264 1275 3.126831 CTGCAAGGTCCGATTGATACTC 58.873 50.000 0.00 0.00 0.00 2.59
1265 1276 2.158957 TGCAAGGTCCGATTGATACTCC 60.159 50.000 0.00 0.00 0.00 3.85
1266 1277 2.743938 CAAGGTCCGATTGATACTCCG 58.256 52.381 0.00 0.00 0.00 4.63
1267 1278 1.329256 AGGTCCGATTGATACTCCGG 58.671 55.000 0.00 0.00 43.02 5.14
1268 1279 1.038280 GGTCCGATTGATACTCCGGT 58.962 55.000 0.00 0.00 42.34 5.28
1269 1280 1.269621 GGTCCGATTGATACTCCGGTG 60.270 57.143 0.00 0.00 42.34 4.94
1270 1281 1.037493 TCCGATTGATACTCCGGTGG 58.963 55.000 8.63 2.00 42.34 4.61
1271 1282 0.750850 CCGATTGATACTCCGGTGGT 59.249 55.000 8.63 8.16 37.40 4.16
1272 1283 1.269621 CCGATTGATACTCCGGTGGTC 60.270 57.143 8.63 6.37 37.40 4.02
1273 1284 1.407618 CGATTGATACTCCGGTGGTCA 59.592 52.381 8.63 8.88 0.00 4.02
1274 1285 2.159156 CGATTGATACTCCGGTGGTCAA 60.159 50.000 21.10 21.10 36.55 3.18
1275 1286 3.492656 CGATTGATACTCCGGTGGTCAAT 60.493 47.826 25.99 25.99 40.89 2.57
1276 1287 2.979814 TGATACTCCGGTGGTCAATG 57.020 50.000 8.63 0.00 0.00 2.82
1277 1288 1.134521 TGATACTCCGGTGGTCAATGC 60.135 52.381 8.63 0.00 0.00 3.56
1278 1289 0.180406 ATACTCCGGTGGTCAATGCC 59.820 55.000 8.63 0.00 0.00 4.40
1279 1290 1.195442 TACTCCGGTGGTCAATGCCA 61.195 55.000 8.63 0.00 35.93 4.92
1280 1291 1.077501 CTCCGGTGGTCAATGCCAT 60.078 57.895 0.00 0.00 41.08 4.40
1281 1292 1.077787 TCCGGTGGTCAATGCCATC 60.078 57.895 0.00 0.00 41.08 3.51
1282 1293 1.077501 CCGGTGGTCAATGCCATCT 60.078 57.895 0.00 0.00 41.08 2.90
1283 1294 1.378882 CCGGTGGTCAATGCCATCTG 61.379 60.000 0.00 0.00 41.08 2.90
1284 1295 0.392863 CGGTGGTCAATGCCATCTGA 60.393 55.000 5.66 0.00 41.08 3.27
1285 1296 1.838112 GGTGGTCAATGCCATCTGAA 58.162 50.000 0.18 0.00 41.08 3.02
1286 1297 2.170166 GGTGGTCAATGCCATCTGAAA 58.830 47.619 0.18 0.00 41.08 2.69
1287 1298 2.165030 GGTGGTCAATGCCATCTGAAAG 59.835 50.000 0.18 0.00 41.08 2.62
1313 1324 9.232082 GAGCAGTAGATTTATCATAATCTAGCG 57.768 37.037 6.38 3.26 43.92 4.26
1314 1325 7.704472 AGCAGTAGATTTATCATAATCTAGCGC 59.296 37.037 0.00 0.00 43.92 5.92
1315 1326 7.043059 GCAGTAGATTTATCATAATCTAGCGCC 60.043 40.741 2.29 0.00 43.92 6.53
1316 1327 7.436673 CAGTAGATTTATCATAATCTAGCGCCC 59.563 40.741 2.29 0.00 43.92 6.13
1317 1328 6.299805 AGATTTATCATAATCTAGCGCCCA 57.700 37.500 2.29 0.00 41.77 5.36
1318 1329 6.893583 AGATTTATCATAATCTAGCGCCCAT 58.106 36.000 2.29 0.00 41.77 4.00
1319 1330 6.989169 AGATTTATCATAATCTAGCGCCCATC 59.011 38.462 2.29 0.00 41.77 3.51
1320 1331 5.939764 TTATCATAATCTAGCGCCCATCT 57.060 39.130 2.29 0.00 0.00 2.90
1321 1332 3.599730 TCATAATCTAGCGCCCATCTG 57.400 47.619 2.29 0.00 0.00 2.90
1322 1333 3.165071 TCATAATCTAGCGCCCATCTGA 58.835 45.455 2.29 0.00 0.00 3.27
1323 1334 3.578282 TCATAATCTAGCGCCCATCTGAA 59.422 43.478 2.29 0.00 0.00 3.02
1324 1335 4.040339 TCATAATCTAGCGCCCATCTGAAA 59.960 41.667 2.29 0.00 0.00 2.69
1325 1336 2.540265 ATCTAGCGCCCATCTGAAAG 57.460 50.000 2.29 0.00 0.00 2.62
1361 1372 5.045872 GTCATATGCCATCTTTTCTTTGCC 58.954 41.667 0.00 0.00 0.00 4.52
1387 1398 3.242543 GGCGCACACAAATCAGAAGATAG 60.243 47.826 10.83 0.00 33.08 2.08
1389 1400 4.493220 GCGCACACAAATCAGAAGATAGAC 60.493 45.833 0.30 0.00 33.08 2.59
1391 1402 5.120674 CGCACACAAATCAGAAGATAGACAA 59.879 40.000 0.00 0.00 33.08 3.18
1392 1403 6.310197 GCACACAAATCAGAAGATAGACAAC 58.690 40.000 0.00 0.00 33.08 3.32
1434 1449 3.120923 CGCCAAAACATGTGATTTTGCTC 60.121 43.478 13.66 8.19 42.94 4.26
1457 1472 0.460987 CAAGGCCGGCACAAAAACAA 60.461 50.000 30.85 0.00 0.00 2.83
1538 1553 1.278238 CCGTCGACAACTATCAAGCC 58.722 55.000 17.16 0.00 0.00 4.35
1546 1561 2.906389 ACAACTATCAAGCCTCACTGGA 59.094 45.455 0.00 0.00 38.35 3.86
1592 1607 7.924358 TCCCTAATGGTTTACTCTATTGCTA 57.076 36.000 0.00 0.00 34.77 3.49
1649 1664 4.405680 TCCTGTCAGAAACCGATCATATGT 59.594 41.667 0.00 0.00 0.00 2.29
1650 1665 5.596772 TCCTGTCAGAAACCGATCATATGTA 59.403 40.000 0.00 0.00 0.00 2.29
1651 1666 5.923114 CCTGTCAGAAACCGATCATATGTAG 59.077 44.000 0.00 0.00 0.00 2.74
1667 1682 3.906720 TGTAGTACCTGAAATGGCTCC 57.093 47.619 0.00 0.00 0.00 4.70
1723 1738 3.915575 GGCAGATGAGTTGGCCAG 58.084 61.111 5.11 0.00 45.70 4.85
1734 1749 0.463620 GTTGGCCAGACCTTGCAAAA 59.536 50.000 5.11 0.00 40.22 2.44
1770 1785 7.272978 TGGTAGTAATAGGATTTCAGACTTGC 58.727 38.462 0.00 0.00 0.00 4.01
1812 1827 8.596781 AACTGTTTTAAGAGGCTCTAGATAGA 57.403 34.615 19.07 0.00 0.00 1.98
1813 1828 8.002984 ACTGTTTTAAGAGGCTCTAGATAGAC 57.997 38.462 19.07 12.12 0.00 2.59
1886 1904 1.265095 CTGTTTTCTGCAGCGTCATGT 59.735 47.619 9.47 0.00 0.00 3.21
1922 1940 0.895530 TCAGTCCTGACCGGCTAAAG 59.104 55.000 0.00 0.00 34.14 1.85
1946 1964 2.773993 TCATGCACATCTCAAGCTCA 57.226 45.000 0.00 0.00 0.00 4.26
1989 2007 1.962822 CTCTGCCGCAACTTCAGCA 60.963 57.895 0.00 0.00 0.00 4.41
2012 2030 3.124806 GTCATCTGGCTGCATTATCATCG 59.875 47.826 0.50 0.00 0.00 3.84
2024 2042 4.561530 GCATTATCATCGGTTCAGGAGCTA 60.562 45.833 0.00 0.00 0.00 3.32
2108 2129 1.227823 CACCAGCGGTCTTGTTGGA 60.228 57.895 3.57 0.00 42.30 3.53
2141 2162 5.409826 GTCTGACAATTCGTCTTCTTGGAAT 59.590 40.000 2.24 0.00 45.60 3.01
2186 2207 2.495866 CATCCCAATTGCACCGGC 59.504 61.111 0.00 0.00 41.68 6.13
2314 2335 4.271696 TGATGAATCACGGTGAGTCTTT 57.728 40.909 30.92 21.50 41.56 2.52
2315 2336 4.641396 TGATGAATCACGGTGAGTCTTTT 58.359 39.130 30.92 19.48 41.56 2.27
2316 2337 5.063204 TGATGAATCACGGTGAGTCTTTTT 58.937 37.500 30.92 17.49 41.56 1.94
2351 2372 5.051816 CACTGGAGTACTTTTGTTCCGTTA 58.948 41.667 0.00 0.00 33.18 3.18
2541 2562 4.848299 CGAAGCAAGAAAAGGAAAAGATCG 59.152 41.667 0.00 0.00 0.00 3.69
2610 2631 5.007034 TGGAAAGTGTTCAACAGTGAAGAA 58.993 37.500 0.00 0.00 44.44 2.52
2766 2787 7.526142 ACAAAGGAAAAAGGATTTCTACTCC 57.474 36.000 1.47 0.00 37.28 3.85
2955 2976 2.485814 GAGAATGAGAGTTGCCACAACC 59.514 50.000 6.83 0.00 0.00 3.77
2996 3017 6.030849 CGTAAGTCATCCTAACTCTTGTCTG 58.969 44.000 0.00 0.00 0.00 3.51
3005 3026 3.477210 AACTCTTGTCTGTTCCACTCC 57.523 47.619 0.00 0.00 0.00 3.85
3016 3037 4.282449 TCTGTTCCACTCCGAGAAATGTTA 59.718 41.667 1.33 0.00 0.00 2.41
3152 3308 5.305644 TGTGTTTACCCAATTATGGTTGCTT 59.694 36.000 4.31 0.00 46.01 3.91
3172 3328 4.377124 GCTTGTTAAGCGGAACTTGTAGTC 60.377 45.833 0.00 0.00 45.74 2.59
3173 3335 3.656559 TGTTAAGCGGAACTTGTAGTCC 58.343 45.455 5.53 0.00 39.58 3.85
3334 3496 8.755696 TTGGGAAAATTGCGATATATAATTGC 57.244 30.769 0.00 0.00 0.00 3.56
3335 3497 7.890515 TGGGAAAATTGCGATATATAATTGCA 58.109 30.769 3.58 3.58 36.70 4.08
3336 3498 8.530311 TGGGAAAATTGCGATATATAATTGCAT 58.470 29.630 7.47 0.00 38.15 3.96
3344 3506 7.909267 TGCGATATATAATTGCATAAGTCAGC 58.091 34.615 0.00 0.00 33.79 4.26
3346 3508 8.272176 GCGATATATAATTGCATAAGTCAGCTC 58.728 37.037 0.00 0.00 0.00 4.09
3347 3509 9.526713 CGATATATAATTGCATAAGTCAGCTCT 57.473 33.333 0.00 0.00 0.00 4.09
3349 3511 7.918536 ATATAATTGCATAAGTCAGCTCTGG 57.081 36.000 0.00 0.00 0.00 3.86
3350 3512 3.920231 ATTGCATAAGTCAGCTCTGGA 57.080 42.857 0.00 0.00 0.00 3.86
3351 3513 2.680312 TGCATAAGTCAGCTCTGGAC 57.320 50.000 0.00 0.00 35.50 4.02
3352 3514 1.901833 TGCATAAGTCAGCTCTGGACA 59.098 47.619 5.57 0.00 37.74 4.02
3353 3515 2.275318 GCATAAGTCAGCTCTGGACAC 58.725 52.381 5.57 0.00 37.74 3.67
3354 3516 2.093764 GCATAAGTCAGCTCTGGACACT 60.094 50.000 5.57 0.00 37.74 3.55
3356 3518 1.709578 AAGTCAGCTCTGGACACTGA 58.290 50.000 5.57 0.00 38.09 3.41
3367 3573 6.150140 AGCTCTGGACACTGAAACATTAATTC 59.850 38.462 0.00 0.00 0.00 2.17
3381 3587 7.624360 AACATTAATTCGAGACATTTGGCTA 57.376 32.000 0.00 0.00 30.09 3.93
3426 3658 4.859304 AATGATCGCATACTTACCGGTA 57.141 40.909 11.16 11.16 33.44 4.02
3493 3726 1.142965 CCACCGTGATATCCGTGCA 59.857 57.895 0.00 0.00 0.00 4.57
3508 3741 0.040958 GTGCAAGCAACGTCCTTCTG 60.041 55.000 0.00 0.00 0.00 3.02
3607 3840 2.038269 CAAGGCGGCAACATACGGT 61.038 57.895 13.08 0.00 0.00 4.83
3619 3852 0.253610 CATACGGTTACCTTGCCCCA 59.746 55.000 0.00 0.00 0.00 4.96
3628 3861 1.668826 ACCTTGCCCCAGAGTTCATA 58.331 50.000 0.00 0.00 0.00 2.15
3751 3984 4.742417 CTGGATGGCAGACTATATTCGAG 58.258 47.826 0.00 0.00 0.00 4.04
3799 4032 1.148723 GCATCTGGAGCTGCTGGAT 59.851 57.895 7.01 9.83 34.62 3.41
3949 4182 2.811317 CTCAAGTCAGCGGCGTCC 60.811 66.667 9.37 0.00 0.00 4.79
4202 4442 1.674322 CCCCGTTCTTGCCATCGTT 60.674 57.895 0.00 0.00 0.00 3.85
4289 4529 4.919168 AGCAACATGAATTGTTCAATGTCG 59.081 37.500 0.00 0.00 45.55 4.35
4290 4530 4.090354 GCAACATGAATTGTTCAATGTCGG 59.910 41.667 0.00 1.65 45.55 4.79
4296 4536 4.387559 TGAATTGTTCAATGTCGGTACTCG 59.612 41.667 0.00 0.00 36.59 4.18
4300 4540 3.174375 GTTCAATGTCGGTACTCGGTAC 58.826 50.000 5.84 5.84 38.19 3.34
4310 4550 2.735134 GGTACTCGGTACAAGCTGTTTG 59.265 50.000 13.76 2.50 40.41 2.93
4372 4612 7.116519 GTGGTATATCCTTTCTCAACTTATCGC 59.883 40.741 0.00 0.00 37.07 4.58
4381 4621 2.530177 TCAACTTATCGCTGAGCTTCG 58.470 47.619 1.78 0.00 0.00 3.79
4392 4632 4.868171 TCGCTGAGCTTCGTATTTACAATT 59.132 37.500 1.78 0.00 0.00 2.32
4393 4633 4.957967 CGCTGAGCTTCGTATTTACAATTG 59.042 41.667 3.24 3.24 0.00 2.32
4394 4634 5.220397 CGCTGAGCTTCGTATTTACAATTGA 60.220 40.000 13.59 0.00 0.00 2.57
4395 4635 6.188175 GCTGAGCTTCGTATTTACAATTGAG 58.812 40.000 13.59 0.00 0.00 3.02
4396 4636 6.036083 GCTGAGCTTCGTATTTACAATTGAGA 59.964 38.462 13.59 0.00 0.00 3.27
4398 4638 7.739295 TGAGCTTCGTATTTACAATTGAGAAC 58.261 34.615 13.59 2.19 0.00 3.01
4401 4645 8.230486 AGCTTCGTATTTACAATTGAGAACAAG 58.770 33.333 13.59 4.91 39.46 3.16
4422 4666 5.091261 AGACATGTTGAGAGTACCATTCC 57.909 43.478 0.00 0.00 0.00 3.01
4427 4671 2.572104 GTTGAGAGTACCATTCCAGGGT 59.428 50.000 0.00 0.00 42.48 4.34
4429 4673 2.571653 TGAGAGTACCATTCCAGGGTTG 59.428 50.000 0.00 0.00 39.85 3.77
4434 4678 1.072266 ACCATTCCAGGGTTGCACTA 58.928 50.000 0.00 0.00 34.10 2.74
4437 4681 2.290896 CCATTCCAGGGTTGCACTAGAA 60.291 50.000 0.00 0.00 0.00 2.10
4440 4684 2.551270 TCCAGGGTTGCACTAGAAGAT 58.449 47.619 0.00 0.00 0.00 2.40
4441 4685 2.237143 TCCAGGGTTGCACTAGAAGATG 59.763 50.000 0.00 0.00 0.00 2.90
4442 4686 2.012673 CAGGGTTGCACTAGAAGATGC 58.987 52.381 0.00 0.00 42.40 3.91
4448 4692 2.964740 TGCACTAGAAGATGCACACTC 58.035 47.619 0.00 0.00 46.63 3.51
4449 4693 2.299867 TGCACTAGAAGATGCACACTCA 59.700 45.455 0.00 0.00 46.63 3.41
4450 4694 3.055602 TGCACTAGAAGATGCACACTCAT 60.056 43.478 0.00 0.00 46.63 2.90
4451 4695 3.309138 GCACTAGAAGATGCACACTCATG 59.691 47.826 0.00 0.00 41.65 3.07
4452 4696 4.752146 CACTAGAAGATGCACACTCATGA 58.248 43.478 0.00 0.00 0.00 3.07
4453 4697 5.173664 CACTAGAAGATGCACACTCATGAA 58.826 41.667 0.00 0.00 0.00 2.57
4454 4698 5.063186 CACTAGAAGATGCACACTCATGAAC 59.937 44.000 0.00 0.00 0.00 3.18
4455 4699 4.283363 AGAAGATGCACACTCATGAACT 57.717 40.909 0.00 0.00 0.00 3.01
4456 4700 5.411831 AGAAGATGCACACTCATGAACTA 57.588 39.130 0.00 0.00 0.00 2.24
4457 4701 5.987098 AGAAGATGCACACTCATGAACTAT 58.013 37.500 0.00 0.00 0.00 2.12
4458 4702 7.117285 AGAAGATGCACACTCATGAACTATA 57.883 36.000 0.00 0.00 0.00 1.31
4459 4703 7.559486 AGAAGATGCACACTCATGAACTATAA 58.441 34.615 0.00 0.00 0.00 0.98
4460 4704 8.043113 AGAAGATGCACACTCATGAACTATAAA 58.957 33.333 0.00 0.00 0.00 1.40
4461 4705 8.743085 AAGATGCACACTCATGAACTATAAAT 57.257 30.769 0.00 0.00 0.00 1.40
4462 4706 9.836864 AAGATGCACACTCATGAACTATAAATA 57.163 29.630 0.00 0.00 0.00 1.40
4463 4707 9.486497 AGATGCACACTCATGAACTATAAATAG 57.514 33.333 0.00 0.00 36.46 1.73
4464 4708 9.481340 GATGCACACTCATGAACTATAAATAGA 57.519 33.333 4.02 0.00 34.50 1.98
4465 4709 8.648557 TGCACACTCATGAACTATAAATAGAC 57.351 34.615 4.02 0.00 34.50 2.59
4466 4710 8.257306 TGCACACTCATGAACTATAAATAGACA 58.743 33.333 4.02 4.58 34.50 3.41
4467 4711 9.265901 GCACACTCATGAACTATAAATAGACAT 57.734 33.333 4.02 6.38 34.36 3.06
4481 4725 6.893958 AAATAGACATGTCTGAGTTTAGCG 57.106 37.500 33.76 0.00 40.71 4.26
4482 4726 5.836821 ATAGACATGTCTGAGTTTAGCGA 57.163 39.130 33.76 13.57 40.71 4.93
4483 4727 4.103365 AGACATGTCTGAGTTTAGCGAG 57.897 45.455 27.37 0.00 38.75 5.03
4484 4728 2.600867 GACATGTCTGAGTTTAGCGAGC 59.399 50.000 18.83 0.00 0.00 5.03
4485 4729 2.029020 ACATGTCTGAGTTTAGCGAGCA 60.029 45.455 0.00 0.00 0.00 4.26
4486 4730 2.812358 TGTCTGAGTTTAGCGAGCAA 57.188 45.000 0.00 0.00 0.00 3.91
4487 4731 2.404215 TGTCTGAGTTTAGCGAGCAAC 58.596 47.619 0.00 0.00 0.00 4.17
4488 4732 1.387084 GTCTGAGTTTAGCGAGCAACG 59.613 52.381 0.00 0.00 45.66 4.10
4489 4733 1.000607 TCTGAGTTTAGCGAGCAACGT 60.001 47.619 0.00 0.00 44.60 3.99
4490 4734 1.792949 CTGAGTTTAGCGAGCAACGTT 59.207 47.619 0.00 0.00 44.60 3.99
4491 4735 1.790623 TGAGTTTAGCGAGCAACGTTC 59.209 47.619 0.00 0.00 44.60 3.95
4492 4736 1.790623 GAGTTTAGCGAGCAACGTTCA 59.209 47.619 0.00 0.00 44.60 3.18
4493 4737 1.792949 AGTTTAGCGAGCAACGTTCAG 59.207 47.619 0.00 0.00 44.60 3.02
4494 4738 1.525619 GTTTAGCGAGCAACGTTCAGT 59.474 47.619 0.00 0.00 44.60 3.41
4495 4739 1.136690 TTAGCGAGCAACGTTCAGTG 58.863 50.000 0.00 0.00 44.60 3.66
4496 4740 0.031585 TAGCGAGCAACGTTCAGTGT 59.968 50.000 0.00 0.00 44.60 3.55
4497 4741 1.201825 GCGAGCAACGTTCAGTGTC 59.798 57.895 0.00 0.00 44.60 3.67
4498 4742 1.215655 GCGAGCAACGTTCAGTGTCT 61.216 55.000 0.00 0.00 44.60 3.41
4499 4743 1.929038 GCGAGCAACGTTCAGTGTCTA 60.929 52.381 0.00 0.00 44.60 2.59
4500 4744 1.714460 CGAGCAACGTTCAGTGTCTAC 59.286 52.381 0.00 0.00 37.22 2.59
4501 4745 2.604855 CGAGCAACGTTCAGTGTCTACT 60.605 50.000 0.00 0.00 35.86 2.57
4502 4746 2.981140 GAGCAACGTTCAGTGTCTACTC 59.019 50.000 0.00 0.00 34.07 2.59
4503 4747 2.623889 AGCAACGTTCAGTGTCTACTCT 59.376 45.455 0.00 0.00 34.07 3.24
4504 4748 2.981140 GCAACGTTCAGTGTCTACTCTC 59.019 50.000 0.00 0.00 34.07 3.20
4505 4749 3.304794 GCAACGTTCAGTGTCTACTCTCT 60.305 47.826 0.00 0.00 34.07 3.10
4506 4750 4.083431 GCAACGTTCAGTGTCTACTCTCTA 60.083 45.833 0.00 0.00 34.07 2.43
4507 4751 5.623335 CAACGTTCAGTGTCTACTCTCTAG 58.377 45.833 0.00 0.00 34.07 2.43
4508 4752 4.255301 ACGTTCAGTGTCTACTCTCTAGG 58.745 47.826 0.00 0.00 34.07 3.02
4509 4753 4.020396 ACGTTCAGTGTCTACTCTCTAGGA 60.020 45.833 0.00 0.00 34.07 2.94
4510 4754 4.569162 CGTTCAGTGTCTACTCTCTAGGAG 59.431 50.000 6.67 6.67 46.87 3.69
4511 4755 4.145365 TCAGTGTCTACTCTCTAGGAGC 57.855 50.000 7.83 0.00 45.48 4.70
4512 4756 3.778075 TCAGTGTCTACTCTCTAGGAGCT 59.222 47.826 7.83 0.00 45.48 4.09
4513 4757 3.876914 CAGTGTCTACTCTCTAGGAGCTG 59.123 52.174 0.00 3.75 45.48 4.24
4514 4758 2.616842 GTGTCTACTCTCTAGGAGCTGC 59.383 54.545 0.00 0.00 45.48 5.25
4515 4759 2.507886 TGTCTACTCTCTAGGAGCTGCT 59.492 50.000 13.92 13.92 45.48 4.24
4516 4760 2.878406 GTCTACTCTCTAGGAGCTGCTG 59.122 54.545 19.25 8.13 45.48 4.41
4517 4761 2.158682 TCTACTCTCTAGGAGCTGCTGG 60.159 54.545 19.25 15.87 45.48 4.85
4518 4762 0.334676 ACTCTCTAGGAGCTGCTGGT 59.665 55.000 19.25 5.97 45.48 4.00
4519 4763 1.032014 CTCTCTAGGAGCTGCTGGTC 58.968 60.000 19.25 13.79 39.76 4.02
4520 4764 0.628522 TCTCTAGGAGCTGCTGGTCT 59.371 55.000 19.25 4.42 40.29 3.85
4521 4765 1.847088 TCTCTAGGAGCTGCTGGTCTA 59.153 52.381 19.25 5.41 40.29 2.59
4522 4766 2.445145 TCTCTAGGAGCTGCTGGTCTAT 59.555 50.000 19.25 12.74 40.29 1.98
4523 4767 2.557924 CTCTAGGAGCTGCTGGTCTATG 59.442 54.545 19.25 11.33 40.29 2.23
4524 4768 2.091610 TCTAGGAGCTGCTGGTCTATGT 60.092 50.000 19.25 7.48 40.29 2.29
4525 4769 2.461300 AGGAGCTGCTGGTCTATGTA 57.539 50.000 20.17 0.00 40.29 2.29
4526 4770 2.969628 AGGAGCTGCTGGTCTATGTAT 58.030 47.619 20.17 0.52 40.29 2.29
4527 4771 3.312890 AGGAGCTGCTGGTCTATGTATT 58.687 45.455 20.17 0.00 40.29 1.89
4528 4772 4.483950 AGGAGCTGCTGGTCTATGTATTA 58.516 43.478 20.17 0.00 40.29 0.98
4529 4773 5.090139 AGGAGCTGCTGGTCTATGTATTAT 58.910 41.667 20.17 0.00 40.29 1.28
4530 4774 5.186797 AGGAGCTGCTGGTCTATGTATTATC 59.813 44.000 20.17 2.30 40.29 1.75
4531 4775 5.186797 GGAGCTGCTGGTCTATGTATTATCT 59.813 44.000 20.17 0.00 40.29 1.98
4532 4776 6.035368 AGCTGCTGGTCTATGTATTATCTG 57.965 41.667 0.00 0.00 0.00 2.90
4533 4777 5.777223 AGCTGCTGGTCTATGTATTATCTGA 59.223 40.000 0.00 0.00 0.00 3.27
4534 4778 6.268617 AGCTGCTGGTCTATGTATTATCTGAA 59.731 38.462 0.00 0.00 0.00 3.02
4535 4779 7.038445 AGCTGCTGGTCTATGTATTATCTGAAT 60.038 37.037 0.00 0.00 0.00 2.57
4536 4780 7.064371 GCTGCTGGTCTATGTATTATCTGAATG 59.936 40.741 0.00 0.00 0.00 2.67
4537 4781 7.966812 TGCTGGTCTATGTATTATCTGAATGT 58.033 34.615 0.00 0.00 0.00 2.71
4538 4782 8.432013 TGCTGGTCTATGTATTATCTGAATGTT 58.568 33.333 0.00 0.00 0.00 2.71
4539 4783 8.715998 GCTGGTCTATGTATTATCTGAATGTTG 58.284 37.037 0.00 0.00 0.00 3.33
4540 4784 9.770097 CTGGTCTATGTATTATCTGAATGTTGT 57.230 33.333 0.00 0.00 0.00 3.32
4549 4793 9.855361 GTATTATCTGAATGTTGTTTGATCTCG 57.145 33.333 0.00 0.00 0.00 4.04
4550 4794 5.808042 ATCTGAATGTTGTTTGATCTCGG 57.192 39.130 0.00 0.00 0.00 4.63
4551 4795 4.641396 TCTGAATGTTGTTTGATCTCGGT 58.359 39.130 0.00 0.00 0.00 4.69
4552 4796 5.789521 TCTGAATGTTGTTTGATCTCGGTA 58.210 37.500 0.00 0.00 0.00 4.02
4553 4797 5.869344 TCTGAATGTTGTTTGATCTCGGTAG 59.131 40.000 0.00 0.00 0.00 3.18
4554 4798 5.547465 TGAATGTTGTTTGATCTCGGTAGT 58.453 37.500 0.00 0.00 0.00 2.73
4555 4799 5.995282 TGAATGTTGTTTGATCTCGGTAGTT 59.005 36.000 0.00 0.00 0.00 2.24
4556 4800 6.485313 TGAATGTTGTTTGATCTCGGTAGTTT 59.515 34.615 0.00 0.00 0.00 2.66
4557 4801 6.877611 ATGTTGTTTGATCTCGGTAGTTTT 57.122 33.333 0.00 0.00 0.00 2.43
4558 4802 6.055231 TGTTGTTTGATCTCGGTAGTTTTG 57.945 37.500 0.00 0.00 0.00 2.44
4559 4803 5.587043 TGTTGTTTGATCTCGGTAGTTTTGT 59.413 36.000 0.00 0.00 0.00 2.83
4560 4804 5.666969 TGTTTGATCTCGGTAGTTTTGTG 57.333 39.130 0.00 0.00 0.00 3.33
4561 4805 5.361427 TGTTTGATCTCGGTAGTTTTGTGA 58.639 37.500 0.00 0.00 0.00 3.58
4562 4806 5.995282 TGTTTGATCTCGGTAGTTTTGTGAT 59.005 36.000 0.00 0.00 0.00 3.06
4563 4807 7.156000 TGTTTGATCTCGGTAGTTTTGTGATA 58.844 34.615 0.00 0.00 0.00 2.15
4564 4808 7.822334 TGTTTGATCTCGGTAGTTTTGTGATAT 59.178 33.333 0.00 0.00 0.00 1.63
4565 4809 9.309516 GTTTGATCTCGGTAGTTTTGTGATATA 57.690 33.333 0.00 0.00 0.00 0.86
4566 4810 9.878667 TTTGATCTCGGTAGTTTTGTGATATAA 57.121 29.630 0.00 0.00 0.00 0.98
4567 4811 8.867112 TGATCTCGGTAGTTTTGTGATATAAC 57.133 34.615 0.00 0.00 0.00 1.89
4568 4812 8.471609 TGATCTCGGTAGTTTTGTGATATAACA 58.528 33.333 0.00 0.00 0.00 2.41
4569 4813 8.644318 ATCTCGGTAGTTTTGTGATATAACAC 57.356 34.615 6.20 6.20 40.68 3.32
4570 4814 7.604549 TCTCGGTAGTTTTGTGATATAACACA 58.395 34.615 11.44 11.44 46.86 3.72
4579 4823 5.966636 TGTGATATAACACATTGTCGAGC 57.033 39.130 11.44 0.00 44.29 5.03
4580 4824 5.660460 TGTGATATAACACATTGTCGAGCT 58.340 37.500 11.44 0.00 44.29 4.09
4581 4825 6.106003 TGTGATATAACACATTGTCGAGCTT 58.894 36.000 11.44 0.00 44.29 3.74
4582 4826 6.255670 TGTGATATAACACATTGTCGAGCTTC 59.744 38.462 11.44 0.00 44.29 3.86
4583 4827 6.255670 GTGATATAACACATTGTCGAGCTTCA 59.744 38.462 8.17 0.00 40.11 3.02
4584 4828 6.986231 TGATATAACACATTGTCGAGCTTCAT 59.014 34.615 0.00 0.00 0.00 2.57
4585 4829 8.141268 TGATATAACACATTGTCGAGCTTCATA 58.859 33.333 0.00 0.00 0.00 2.15
4586 4830 9.144747 GATATAACACATTGTCGAGCTTCATAT 57.855 33.333 0.00 0.00 0.00 1.78
4587 4831 7.792374 ATAACACATTGTCGAGCTTCATATT 57.208 32.000 0.00 0.00 0.00 1.28
4588 4832 6.500684 AACACATTGTCGAGCTTCATATTT 57.499 33.333 0.00 0.00 0.00 1.40
4589 4833 7.609760 AACACATTGTCGAGCTTCATATTTA 57.390 32.000 0.00 0.00 0.00 1.40
4590 4834 7.005062 ACACATTGTCGAGCTTCATATTTAC 57.995 36.000 0.00 0.00 0.00 2.01
4591 4835 6.593770 ACACATTGTCGAGCTTCATATTTACA 59.406 34.615 0.00 0.00 0.00 2.41
4592 4836 6.901887 CACATTGTCGAGCTTCATATTTACAC 59.098 38.462 0.00 0.00 0.00 2.90
4593 4837 6.818644 ACATTGTCGAGCTTCATATTTACACT 59.181 34.615 0.00 0.00 0.00 3.55
4594 4838 7.334421 ACATTGTCGAGCTTCATATTTACACTT 59.666 33.333 0.00 0.00 0.00 3.16
4595 4839 6.647212 TGTCGAGCTTCATATTTACACTTG 57.353 37.500 0.00 0.00 0.00 3.16
4596 4840 6.394809 TGTCGAGCTTCATATTTACACTTGA 58.605 36.000 0.00 0.00 0.00 3.02
4597 4841 6.531594 TGTCGAGCTTCATATTTACACTTGAG 59.468 38.462 0.00 0.00 0.00 3.02
4598 4842 6.752351 GTCGAGCTTCATATTTACACTTGAGA 59.248 38.462 0.00 0.00 0.00 3.27
4599 4843 7.275779 GTCGAGCTTCATATTTACACTTGAGAA 59.724 37.037 0.00 0.00 0.00 2.87
4600 4844 7.275779 TCGAGCTTCATATTTACACTTGAGAAC 59.724 37.037 0.00 0.00 0.00 3.01
4601 4845 7.063426 CGAGCTTCATATTTACACTTGAGAACA 59.937 37.037 0.00 0.00 0.00 3.18
4602 4846 8.621532 AGCTTCATATTTACACTTGAGAACAA 57.378 30.769 0.00 0.00 34.65 2.83
4603 4847 9.066892 AGCTTCATATTTACACTTGAGAACAAA 57.933 29.630 0.00 0.00 35.49 2.83
4604 4848 9.677567 GCTTCATATTTACACTTGAGAACAAAA 57.322 29.630 0.00 0.00 35.49 2.44
4611 4855 9.651913 ATTTACACTTGAGAACAAAAATGTGTT 57.348 25.926 0.00 0.00 44.38 3.32
4612 4856 6.949578 ACACTTGAGAACAAAAATGTGTTG 57.050 33.333 0.00 0.00 41.78 3.33
4613 4857 6.686630 ACACTTGAGAACAAAAATGTGTTGA 58.313 32.000 0.00 0.00 41.78 3.18
4614 4858 6.808212 ACACTTGAGAACAAAAATGTGTTGAG 59.192 34.615 0.00 0.00 41.78 3.02
4615 4859 7.028962 CACTTGAGAACAAAAATGTGTTGAGA 58.971 34.615 0.00 0.00 41.78 3.27
4616 4860 7.703621 CACTTGAGAACAAAAATGTGTTGAGAT 59.296 33.333 0.00 0.00 41.78 2.75
4617 4861 7.917505 ACTTGAGAACAAAAATGTGTTGAGATC 59.082 33.333 0.00 0.00 41.78 2.75
4618 4862 7.572523 TGAGAACAAAAATGTGTTGAGATCT 57.427 32.000 0.00 0.00 41.78 2.75
4619 4863 7.999679 TGAGAACAAAAATGTGTTGAGATCTT 58.000 30.769 0.00 0.00 41.78 2.40
4620 4864 8.469200 TGAGAACAAAAATGTGTTGAGATCTTT 58.531 29.630 0.00 0.00 41.78 2.52
4621 4865 8.638685 AGAACAAAAATGTGTTGAGATCTTTG 57.361 30.769 0.00 0.00 41.78 2.77
4622 4866 6.833342 ACAAAAATGTGTTGAGATCTTTGC 57.167 33.333 0.00 0.00 0.00 3.68
4623 4867 6.339730 ACAAAAATGTGTTGAGATCTTTGCA 58.660 32.000 0.00 0.00 0.00 4.08
4624 4868 6.256321 ACAAAAATGTGTTGAGATCTTTGCAC 59.744 34.615 13.90 13.90 0.00 4.57
4625 4869 5.779529 AAATGTGTTGAGATCTTTGCACT 57.220 34.783 18.56 7.68 0.00 4.40
4626 4870 6.882610 AAATGTGTTGAGATCTTTGCACTA 57.117 33.333 18.56 10.20 0.00 2.74
4627 4871 6.492007 AATGTGTTGAGATCTTTGCACTAG 57.508 37.500 18.56 0.00 0.00 2.57
4628 4872 5.213891 TGTGTTGAGATCTTTGCACTAGA 57.786 39.130 18.56 0.52 0.00 2.43
4629 4873 5.798132 TGTGTTGAGATCTTTGCACTAGAT 58.202 37.500 18.56 9.66 35.12 1.98
4630 4874 5.640783 TGTGTTGAGATCTTTGCACTAGATG 59.359 40.000 13.72 0.00 32.64 2.90
4631 4875 5.641209 GTGTTGAGATCTTTGCACTAGATGT 59.359 40.000 13.72 10.44 32.64 3.06
4751 4997 0.771127 AGGTTTCAGTGGCTGGCTAA 59.229 50.000 2.00 0.00 31.51 3.09
4773 5019 3.294493 GGGCTCAAACGGCAGCAA 61.294 61.111 0.00 0.00 37.38 3.91
4806 5052 1.069204 CTGTGTGCTACTGACACCACT 59.931 52.381 0.00 0.00 42.63 4.00
4897 5143 2.366167 AGCCGCTCCAGGATCCTT 60.366 61.111 13.00 0.00 0.00 3.36
4930 5176 1.079543 CAGTGGCTTCACCGGAGAG 60.080 63.158 9.46 3.50 43.94 3.20
4933 5179 2.683933 GGCTTCACCGGAGAGGGA 60.684 66.667 9.46 0.00 46.96 4.20
4937 5183 1.535444 TTCACCGGAGAGGGAAGCA 60.535 57.895 9.46 0.00 46.96 3.91
4942 5188 1.414061 CCGGAGAGGGAAGCATGGAT 61.414 60.000 0.00 0.00 35.97 3.41
4961 5207 3.420482 CCGGAGGCCTGGGGAATT 61.420 66.667 12.00 0.00 46.14 2.17
4962 5208 2.124151 CGGAGGCCTGGGGAATTG 60.124 66.667 12.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 5.303589 AGCTATGCCATGCTTGTATGAAATT 59.696 36.000 0.35 0.00 35.86 1.82
188 189 1.609320 GCTCCCCAGATCCGAAATAGC 60.609 57.143 0.00 0.00 0.00 2.97
346 348 2.936498 GCACTGCTATTCCGTTACACAT 59.064 45.455 0.00 0.00 0.00 3.21
348 350 2.618053 AGCACTGCTATTCCGTTACAC 58.382 47.619 0.21 0.00 36.99 2.90
361 363 1.495584 TTTCACCGACGAAGCACTGC 61.496 55.000 0.00 0.00 0.00 4.40
374 376 7.223193 GGTACACCTAATTTTGTTTGTTTCACC 59.777 37.037 0.00 0.00 0.00 4.02
421 423 6.183360 ACCTACGCATTTTGACCTGTTAAAAA 60.183 34.615 4.40 0.58 32.95 1.94
444 446 5.678132 TCGCAAACTTTTAGGTAAAGACC 57.322 39.130 4.42 0.00 45.00 3.85
451 453 2.685897 TGTTGCTCGCAAACTTTTAGGT 59.314 40.909 5.83 0.00 37.70 3.08
458 460 4.455533 TCATCTAAATGTTGCTCGCAAACT 59.544 37.500 5.83 0.00 37.70 2.66
477 479 5.409826 AGTCAACGGAATGTCTCTTTTCATC 59.590 40.000 0.00 0.00 0.00 2.92
481 483 3.741344 CGAGTCAACGGAATGTCTCTTTT 59.259 43.478 9.36 0.00 34.60 2.27
492 494 3.215642 TCGTAGTCGAGTCAACGGA 57.784 52.632 13.94 1.15 41.35 4.69
524 526 6.164176 CCTATCATACCGAGGTTGATAAACC 58.836 44.000 3.39 3.39 43.15 3.27
525 527 6.164176 CCCTATCATACCGAGGTTGATAAAC 58.836 44.000 18.50 0.00 32.94 2.01
534 537 1.890894 CCGCCCTATCATACCGAGG 59.109 63.158 0.00 0.00 0.00 4.63
538 541 0.685097 TTGAGCCGCCCTATCATACC 59.315 55.000 0.00 0.00 0.00 2.73
562 565 1.142748 CGAGCGCCTCCAAGAGATT 59.857 57.895 2.29 0.00 0.00 2.40
563 566 2.811101 CGAGCGCCTCCAAGAGAT 59.189 61.111 2.29 0.00 0.00 2.75
564 567 4.135153 GCGAGCGCCTCCAAGAGA 62.135 66.667 2.29 0.00 34.56 3.10
565 568 4.441695 TGCGAGCGCCTCCAAGAG 62.442 66.667 12.70 0.00 41.09 2.85
566 569 4.441695 CTGCGAGCGCCTCCAAGA 62.442 66.667 12.70 0.00 41.09 3.02
567 570 4.441695 TCTGCGAGCGCCTCCAAG 62.442 66.667 12.70 2.68 41.09 3.61
577 580 1.068264 TGCACACTCTAACTCTGCGAG 60.068 52.381 4.36 4.36 35.52 5.03
580 583 1.063806 CGTGCACACTCTAACTCTGC 58.936 55.000 18.64 0.00 0.00 4.26
598 601 3.928992 ACTCATCACTCTAAACACATGCG 59.071 43.478 0.00 0.00 0.00 4.73
600 603 7.600375 ACTTACACTCATCACTCTAAACACATG 59.400 37.037 0.00 0.00 0.00 3.21
608 611 9.682465 AACATAGTACTTACACTCATCACTCTA 57.318 33.333 0.00 0.00 0.00 2.43
755 761 7.907841 ATACCCTTTTTACTCCACAGTTTTT 57.092 32.000 0.00 0.00 33.62 1.94
789 796 4.357279 GCCTGCCTGCCTCCAGTT 62.357 66.667 0.00 0.00 37.38 3.16
805 812 4.729918 CACCTCACCTGGCCCTGC 62.730 72.222 0.00 0.00 0.00 4.85
912 919 1.826720 CTTTCTGCTCTGCTCTCCTCT 59.173 52.381 0.00 0.00 0.00 3.69
913 920 1.824230 TCTTTCTGCTCTGCTCTCCTC 59.176 52.381 0.00 0.00 0.00 3.71
914 921 1.935799 TCTTTCTGCTCTGCTCTCCT 58.064 50.000 0.00 0.00 0.00 3.69
915 922 2.741517 GTTTCTTTCTGCTCTGCTCTCC 59.258 50.000 0.00 0.00 0.00 3.71
1011 1021 2.024871 GCGATGACGAGGTCGAGG 59.975 66.667 6.35 0.00 43.02 4.63
1012 1022 2.024871 GGCGATGACGAGGTCGAG 59.975 66.667 6.35 0.00 43.02 4.04
1013 1023 3.515286 GGGCGATGACGAGGTCGA 61.515 66.667 6.35 0.00 43.02 4.20
1014 1024 3.471244 GAGGGCGATGACGAGGTCG 62.471 68.421 0.00 0.00 46.33 4.79
1015 1025 2.413765 GAGGGCGATGACGAGGTC 59.586 66.667 0.00 0.00 42.66 3.85
1016 1026 3.518998 CGAGGGCGATGACGAGGT 61.519 66.667 0.00 0.00 42.66 3.85
1092 1102 1.546476 AGAGAAGACGGTGGCAAGTAG 59.454 52.381 0.00 0.00 0.00 2.57
1096 1106 2.218603 GAAAAGAGAAGACGGTGGCAA 58.781 47.619 0.00 0.00 0.00 4.52
1133 1143 4.041444 GGAAGAAGGCATGGATCTGTCTAT 59.959 45.833 0.00 0.00 29.02 1.98
1161 1171 0.820891 AGCAAGGCAGGAACACACTG 60.821 55.000 0.00 0.00 38.95 3.66
1183 1193 4.485554 CGAGGTTCTCGCAAGGAG 57.514 61.111 4.36 0.00 46.75 3.69
1216 1226 9.014297 ACGAGATTGAGGAAAATATTTTGACTT 57.986 29.630 17.98 1.31 0.00 3.01
1221 1231 7.121168 TGCAGACGAGATTGAGGAAAATATTTT 59.879 33.333 13.24 13.24 0.00 1.82
1223 1233 6.115446 TGCAGACGAGATTGAGGAAAATATT 58.885 36.000 0.00 0.00 0.00 1.28
1224 1234 5.674525 TGCAGACGAGATTGAGGAAAATAT 58.325 37.500 0.00 0.00 0.00 1.28
1236 1247 0.965866 TCGGACCTTGCAGACGAGAT 60.966 55.000 0.00 0.00 0.00 2.75
1253 1264 1.407618 TGACCACCGGAGTATCAATCG 59.592 52.381 9.46 0.00 36.25 3.34
1262 1273 1.077501 ATGGCATTGACCACCGGAG 60.078 57.895 9.46 0.00 44.17 4.63
1264 1275 1.077501 AGATGGCATTGACCACCGG 60.078 57.895 0.00 0.00 44.17 5.28
1265 1276 0.392863 TCAGATGGCATTGACCACCG 60.393 55.000 0.00 0.00 44.17 4.94
1266 1277 1.838112 TTCAGATGGCATTGACCACC 58.162 50.000 0.00 0.00 44.17 4.61
1267 1278 3.084039 TCTTTCAGATGGCATTGACCAC 58.916 45.455 0.00 0.00 44.17 4.16
1268 1279 3.349927 CTCTTTCAGATGGCATTGACCA 58.650 45.455 0.00 2.90 45.82 4.02
1269 1280 2.098770 GCTCTTTCAGATGGCATTGACC 59.901 50.000 0.00 0.00 0.00 4.02
1270 1281 2.751259 TGCTCTTTCAGATGGCATTGAC 59.249 45.455 0.00 0.00 0.00 3.18
1271 1282 3.014623 CTGCTCTTTCAGATGGCATTGA 58.985 45.455 0.00 4.88 36.19 2.57
1272 1283 2.753452 ACTGCTCTTTCAGATGGCATTG 59.247 45.455 0.00 2.38 37.51 2.82
1273 1284 3.083122 ACTGCTCTTTCAGATGGCATT 57.917 42.857 0.00 0.00 37.51 3.56
1274 1285 2.803030 ACTGCTCTTTCAGATGGCAT 57.197 45.000 0.00 0.00 37.51 4.40
1275 1286 2.833943 TCTACTGCTCTTTCAGATGGCA 59.166 45.455 0.00 0.00 37.51 4.92
1276 1287 3.533606 TCTACTGCTCTTTCAGATGGC 57.466 47.619 0.00 0.00 37.51 4.40
1277 1288 7.930325 TGATAAATCTACTGCTCTTTCAGATGG 59.070 37.037 0.00 0.00 37.51 3.51
1278 1289 8.883954 TGATAAATCTACTGCTCTTTCAGATG 57.116 34.615 0.00 0.00 37.51 2.90
1287 1298 9.232082 CGCTAGATTATGATAAATCTACTGCTC 57.768 37.037 0.00 0.00 42.94 4.26
1288 1299 7.704472 GCGCTAGATTATGATAAATCTACTGCT 59.296 37.037 0.00 0.00 42.94 4.24
1289 1300 7.043059 GGCGCTAGATTATGATAAATCTACTGC 60.043 40.741 7.64 12.49 42.94 4.40
1290 1301 7.436673 GGGCGCTAGATTATGATAAATCTACTG 59.563 40.741 7.64 1.10 42.94 2.74
1291 1302 7.124298 TGGGCGCTAGATTATGATAAATCTACT 59.876 37.037 7.64 0.00 42.94 2.57
1292 1303 7.265673 TGGGCGCTAGATTATGATAAATCTAC 58.734 38.462 7.64 1.35 42.94 2.59
1293 1304 7.418337 TGGGCGCTAGATTATGATAAATCTA 57.582 36.000 7.64 6.25 42.94 1.98
1294 1305 6.299805 TGGGCGCTAGATTATGATAAATCT 57.700 37.500 7.64 4.65 45.79 2.40
1295 1306 6.989169 AGATGGGCGCTAGATTATGATAAATC 59.011 38.462 7.64 0.00 36.33 2.17
1296 1307 6.765036 CAGATGGGCGCTAGATTATGATAAAT 59.235 38.462 7.64 0.00 0.00 1.40
1297 1308 6.070824 TCAGATGGGCGCTAGATTATGATAAA 60.071 38.462 7.64 0.00 0.00 1.40
1298 1309 5.422012 TCAGATGGGCGCTAGATTATGATAA 59.578 40.000 7.64 0.00 0.00 1.75
1299 1310 4.956075 TCAGATGGGCGCTAGATTATGATA 59.044 41.667 7.64 0.00 0.00 2.15
1300 1311 3.771479 TCAGATGGGCGCTAGATTATGAT 59.229 43.478 7.64 0.00 0.00 2.45
1301 1312 3.165071 TCAGATGGGCGCTAGATTATGA 58.835 45.455 7.64 0.59 0.00 2.15
1302 1313 3.599730 TCAGATGGGCGCTAGATTATG 57.400 47.619 7.64 0.00 0.00 1.90
1303 1314 4.284490 TCTTTCAGATGGGCGCTAGATTAT 59.716 41.667 7.64 0.00 0.00 1.28
1304 1315 3.641436 TCTTTCAGATGGGCGCTAGATTA 59.359 43.478 7.64 0.00 0.00 1.75
1305 1316 2.435805 TCTTTCAGATGGGCGCTAGATT 59.564 45.455 7.64 0.00 0.00 2.40
1306 1317 2.036992 CTCTTTCAGATGGGCGCTAGAT 59.963 50.000 7.64 0.00 0.00 1.98
1307 1318 1.410517 CTCTTTCAGATGGGCGCTAGA 59.589 52.381 7.64 0.00 0.00 2.43
1308 1319 1.863267 CTCTTTCAGATGGGCGCTAG 58.137 55.000 7.64 0.00 0.00 3.42
1309 1320 0.179073 GCTCTTTCAGATGGGCGCTA 60.179 55.000 7.64 0.00 0.00 4.26
1310 1321 1.451028 GCTCTTTCAGATGGGCGCT 60.451 57.895 7.64 0.00 0.00 5.92
1311 1322 1.712977 CTGCTCTTTCAGATGGGCGC 61.713 60.000 0.00 0.00 36.19 6.53
1312 1323 0.392193 ACTGCTCTTTCAGATGGGCG 60.392 55.000 0.00 0.00 37.51 6.13
1313 1324 2.698855 TACTGCTCTTTCAGATGGGC 57.301 50.000 0.00 0.00 37.51 5.36
1314 1325 6.071728 ACAAATTTACTGCTCTTTCAGATGGG 60.072 38.462 0.00 0.00 37.51 4.00
1315 1326 6.917533 ACAAATTTACTGCTCTTTCAGATGG 58.082 36.000 0.00 0.00 37.51 3.51
1316 1327 7.587629 TGACAAATTTACTGCTCTTTCAGATG 58.412 34.615 0.00 0.00 37.51 2.90
1317 1328 7.750229 TGACAAATTTACTGCTCTTTCAGAT 57.250 32.000 0.00 0.00 37.51 2.90
1318 1329 7.750229 ATGACAAATTTACTGCTCTTTCAGA 57.250 32.000 0.00 0.00 37.51 3.27
1319 1330 9.499585 CATATGACAAATTTACTGCTCTTTCAG 57.500 33.333 0.00 0.00 39.86 3.02
1320 1331 7.970061 GCATATGACAAATTTACTGCTCTTTCA 59.030 33.333 6.97 0.00 0.00 2.69
1321 1332 7.433425 GGCATATGACAAATTTACTGCTCTTTC 59.567 37.037 6.97 0.00 0.00 2.62
1322 1333 7.093814 TGGCATATGACAAATTTACTGCTCTTT 60.094 33.333 9.39 0.00 0.00 2.52
1323 1334 6.377996 TGGCATATGACAAATTTACTGCTCTT 59.622 34.615 9.39 0.00 0.00 2.85
1324 1335 5.887598 TGGCATATGACAAATTTACTGCTCT 59.112 36.000 9.39 0.00 0.00 4.09
1325 1336 6.135290 TGGCATATGACAAATTTACTGCTC 57.865 37.500 9.39 0.00 0.00 4.26
1328 1339 9.590451 AAAAGATGGCATATGACAAATTTACTG 57.410 29.630 16.92 0.00 36.16 2.74
1330 1341 9.807649 AGAAAAGATGGCATATGACAAATTTAC 57.192 29.630 16.92 6.67 36.16 2.01
1361 1372 0.387622 CTGATTTGTGTGCGCCCTTG 60.388 55.000 4.18 0.00 0.00 3.61
1389 1400 3.081804 AGCCGGGAGACAAATTTAGTTG 58.918 45.455 2.18 0.00 34.52 3.16
1391 1402 3.344515 GAAGCCGGGAGACAAATTTAGT 58.655 45.455 2.18 0.00 0.00 2.24
1392 1403 2.351726 CGAAGCCGGGAGACAAATTTAG 59.648 50.000 2.18 0.00 0.00 1.85
1457 1472 2.034879 CGAGGTGCCGCAGATTTGT 61.035 57.895 0.00 0.00 0.00 2.83
1484 1499 7.123397 ACACCAGCACCAGTATATATATCAGAG 59.877 40.741 0.00 0.00 0.00 3.35
1587 1602 2.295909 GGTTTTGTGCCAGATGTAGCAA 59.704 45.455 0.00 0.00 41.48 3.91
1592 1607 0.675633 GCAGGTTTTGTGCCAGATGT 59.324 50.000 0.00 0.00 34.67 3.06
1649 1664 3.450904 AGTGGAGCCATTTCAGGTACTA 58.549 45.455 0.00 0.00 36.02 1.82
1650 1665 2.237392 GAGTGGAGCCATTTCAGGTACT 59.763 50.000 0.00 0.00 43.88 2.73
1651 1666 2.237392 AGAGTGGAGCCATTTCAGGTAC 59.763 50.000 0.00 0.00 0.00 3.34
1667 1682 1.000938 GCTTGCCAACCAGAAAGAGTG 60.001 52.381 0.00 0.00 0.00 3.51
1743 1758 9.667107 CAAGTCTGAAATCCTATTACTACCAAA 57.333 33.333 0.00 0.00 0.00 3.28
1744 1759 7.769044 GCAAGTCTGAAATCCTATTACTACCAA 59.231 37.037 0.00 0.00 0.00 3.67
1745 1760 7.093068 TGCAAGTCTGAAATCCTATTACTACCA 60.093 37.037 0.00 0.00 0.00 3.25
1746 1761 7.272978 TGCAAGTCTGAAATCCTATTACTACC 58.727 38.462 0.00 0.00 0.00 3.18
1747 1762 8.768955 CATGCAAGTCTGAAATCCTATTACTAC 58.231 37.037 0.00 0.00 0.00 2.73
1748 1763 7.442364 GCATGCAAGTCTGAAATCCTATTACTA 59.558 37.037 14.21 0.00 0.00 1.82
1749 1764 6.261826 GCATGCAAGTCTGAAATCCTATTACT 59.738 38.462 14.21 0.00 0.00 2.24
1810 1825 0.400213 TTGGATTGGCAACGGAGTCT 59.600 50.000 0.00 0.00 45.00 3.24
1811 1826 1.401905 GATTGGATTGGCAACGGAGTC 59.598 52.381 0.00 0.00 45.00 3.36
1813 1828 1.462616 TGATTGGATTGGCAACGGAG 58.537 50.000 0.00 0.00 42.51 4.63
1886 1904 1.673009 GATTTGCCAACCGTCGGGA 60.673 57.895 17.28 0.00 36.97 5.14
1946 1964 1.614241 CGGATCCGTCCCAGGAAAGT 61.614 60.000 26.35 0.00 44.50 2.66
1989 2007 3.851458 TGATAATGCAGCCAGATGACT 57.149 42.857 0.00 0.00 0.00 3.41
2012 2030 2.747446 TGCGAAATTTAGCTCCTGAACC 59.253 45.455 21.53 0.00 0.00 3.62
2024 2042 3.499918 CACAGAGAGACCTTGCGAAATTT 59.500 43.478 0.00 0.00 0.00 1.82
2096 2114 2.164219 CCATTTCCATCCAACAAGACCG 59.836 50.000 0.00 0.00 0.00 4.79
2100 2118 4.081406 TCAGACCATTTCCATCCAACAAG 58.919 43.478 0.00 0.00 0.00 3.16
2108 2129 4.335416 ACGAATTGTCAGACCATTTCCAT 58.665 39.130 1.52 0.00 0.00 3.41
2141 2162 3.702048 CCGGGAAAGGCGGTCTCA 61.702 66.667 0.00 0.00 0.00 3.27
2159 2180 1.656818 AATTGGGATGCAACGGCTCG 61.657 55.000 0.00 0.00 41.91 5.03
2255 2276 0.468226 ACTCGGCACACTTCTTTCCA 59.532 50.000 0.00 0.00 0.00 3.53
2333 2354 6.774354 TCATGTAACGGAACAAAAGTACTC 57.226 37.500 0.00 0.00 32.02 2.59
2610 2631 7.837863 TGAAGTTCTTGGTTATCGATCTAAGT 58.162 34.615 0.00 0.00 0.00 2.24
2766 2787 3.305629 GCTTTGCAACTCTACTGATCTCG 59.694 47.826 0.00 0.00 0.00 4.04
2955 2976 2.703798 CGCAATCCCCTGTGCAAGG 61.704 63.158 7.69 7.69 46.94 3.61
2996 3017 6.496338 AAATAACATTTCTCGGAGTGGAAC 57.504 37.500 4.69 0.00 0.00 3.62
3109 3262 4.949238 ACACAGCAAACAGGCATCAATATA 59.051 37.500 0.00 0.00 35.83 0.86
3152 3308 3.069872 TGGACTACAAGTTCCGCTTAACA 59.930 43.478 1.54 0.00 35.27 2.41
3159 3315 3.254060 CATCTGTGGACTACAAGTTCCG 58.746 50.000 0.00 0.00 39.20 4.30
3172 3328 6.588719 TTCCCAAGAATTAAACATCTGTGG 57.411 37.500 0.00 0.00 0.00 4.17
3173 3335 8.928733 CATTTTCCCAAGAATTAAACATCTGTG 58.071 33.333 0.00 0.00 0.00 3.66
3235 3397 8.136057 AGCTGACTTATGCAATTATATATCGC 57.864 34.615 0.00 0.00 0.00 4.58
3236 3398 9.526713 AGAGCTGACTTATGCAATTATATATCG 57.473 33.333 0.00 0.00 0.00 2.92
3311 3473 8.931385 ATGCAATTATATATCGCAATTTTCCC 57.069 30.769 0.00 0.00 35.98 3.97
3318 3480 8.390354 GCTGACTTATGCAATTATATATCGCAA 58.610 33.333 0.00 0.00 35.98 4.85
3319 3481 7.765819 AGCTGACTTATGCAATTATATATCGCA 59.234 33.333 0.00 4.33 36.95 5.10
3320 3482 8.136057 AGCTGACTTATGCAATTATATATCGC 57.864 34.615 0.00 0.00 0.00 4.58
3321 3483 9.526713 AGAGCTGACTTATGCAATTATATATCG 57.473 33.333 0.00 0.00 0.00 2.92
3323 3485 9.610705 CCAGAGCTGACTTATGCAATTATATAT 57.389 33.333 0.00 0.00 0.00 0.86
3324 3486 8.815912 TCCAGAGCTGACTTATGCAATTATATA 58.184 33.333 0.00 0.00 0.00 0.86
3327 3489 5.762218 GTCCAGAGCTGACTTATGCAATTAT 59.238 40.000 0.00 0.00 0.00 1.28
3328 3490 5.118990 GTCCAGAGCTGACTTATGCAATTA 58.881 41.667 0.00 0.00 0.00 1.40
3329 3491 3.944015 GTCCAGAGCTGACTTATGCAATT 59.056 43.478 0.00 0.00 0.00 2.32
3330 3492 3.054875 TGTCCAGAGCTGACTTATGCAAT 60.055 43.478 0.00 0.00 0.00 3.56
3331 3493 2.302733 TGTCCAGAGCTGACTTATGCAA 59.697 45.455 0.00 0.00 0.00 4.08
3332 3494 1.901833 TGTCCAGAGCTGACTTATGCA 59.098 47.619 0.00 0.00 0.00 3.96
3333 3495 2.093764 AGTGTCCAGAGCTGACTTATGC 60.094 50.000 0.00 0.00 0.00 3.14
3334 3496 3.194329 TCAGTGTCCAGAGCTGACTTATG 59.806 47.826 0.00 0.00 34.72 1.90
3335 3497 3.435275 TCAGTGTCCAGAGCTGACTTAT 58.565 45.455 0.00 0.00 34.72 1.73
3336 3498 2.876581 TCAGTGTCCAGAGCTGACTTA 58.123 47.619 0.00 0.00 34.72 2.24
3337 3499 1.709578 TCAGTGTCCAGAGCTGACTT 58.290 50.000 0.00 0.00 34.72 3.01
3338 3500 1.709578 TTCAGTGTCCAGAGCTGACT 58.290 50.000 0.00 0.00 38.76 3.41
3339 3501 2.139118 GTTTCAGTGTCCAGAGCTGAC 58.861 52.381 0.00 0.00 38.76 3.51
3341 3503 2.245159 TGTTTCAGTGTCCAGAGCTG 57.755 50.000 0.00 0.00 0.00 4.24
3343 3505 5.886960 ATTAATGTTTCAGTGTCCAGAGC 57.113 39.130 0.00 0.00 0.00 4.09
3344 3506 6.368791 TCGAATTAATGTTTCAGTGTCCAGAG 59.631 38.462 0.00 0.00 0.00 3.35
3346 3508 6.368791 TCTCGAATTAATGTTTCAGTGTCCAG 59.631 38.462 0.00 0.00 0.00 3.86
3347 3509 6.147164 GTCTCGAATTAATGTTTCAGTGTCCA 59.853 38.462 0.00 0.00 0.00 4.02
3348 3510 6.147164 TGTCTCGAATTAATGTTTCAGTGTCC 59.853 38.462 0.00 0.00 0.00 4.02
3349 3511 7.117241 TGTCTCGAATTAATGTTTCAGTGTC 57.883 36.000 0.00 0.00 0.00 3.67
3350 3512 7.672983 ATGTCTCGAATTAATGTTTCAGTGT 57.327 32.000 0.00 0.00 0.00 3.55
3351 3513 8.843733 CAAATGTCTCGAATTAATGTTTCAGTG 58.156 33.333 0.00 0.00 0.00 3.66
3352 3514 8.023128 CCAAATGTCTCGAATTAATGTTTCAGT 58.977 33.333 0.00 0.00 0.00 3.41
3353 3515 7.008628 GCCAAATGTCTCGAATTAATGTTTCAG 59.991 37.037 0.00 0.00 0.00 3.02
3354 3516 6.806249 GCCAAATGTCTCGAATTAATGTTTCA 59.194 34.615 0.00 0.00 0.00 2.69
3356 3518 6.924111 AGCCAAATGTCTCGAATTAATGTTT 58.076 32.000 0.00 0.00 0.00 2.83
3367 3573 5.584649 TGGTTAAAGATAGCCAAATGTCTCG 59.415 40.000 0.00 0.00 39.20 4.04
3403 3635 5.204409 ACCGGTAAGTATGCGATCATTAA 57.796 39.130 4.49 0.00 34.22 1.40
3426 3658 6.819284 TGCAAAAATCTGGAATCAAAAGACT 58.181 32.000 0.00 0.00 0.00 3.24
3607 3840 1.440618 TGAACTCTGGGGCAAGGTAA 58.559 50.000 0.00 0.00 0.00 2.85
3619 3852 4.890581 AGCTCGTTCCTGTATATGAACTCT 59.109 41.667 6.18 0.00 38.93 3.24
3628 3861 2.299013 TGTTGTCAGCTCGTTCCTGTAT 59.701 45.455 0.00 0.00 0.00 2.29
3712 3945 1.609061 CCAGCAGATTCAACGGACTGT 60.609 52.381 0.00 0.00 33.57 3.55
3799 4032 1.014044 GCAAGTCGTTGATGAGCGGA 61.014 55.000 0.00 0.00 35.46 5.54
3889 4122 0.458543 CGACGTGAGACATCCTTGGG 60.459 60.000 0.00 0.00 0.00 4.12
3949 4182 4.869440 CCGCTCCTCAGCTGCTCG 62.869 72.222 9.47 7.32 44.40 5.03
4186 4426 0.165944 GACAACGATGGCAAGAACGG 59.834 55.000 0.00 0.00 33.41 4.44
4202 4442 1.483415 GGGTACAAATAGCCCTCGACA 59.517 52.381 0.00 0.00 42.31 4.35
4212 4452 5.450818 AGAAATCAGCTGGGGTACAAATA 57.549 39.130 15.13 0.00 0.00 1.40
4289 4529 2.735134 CAAACAGCTTGTACCGAGTACC 59.265 50.000 10.45 0.00 38.14 3.34
4290 4530 3.387397 ACAAACAGCTTGTACCGAGTAC 58.613 45.455 7.11 7.11 46.75 2.73
4300 4540 7.118245 TCAGATAACATACAGACAAACAGCTTG 59.882 37.037 0.00 0.00 41.19 4.01
4310 4550 9.102757 ACATCAACATTCAGATAACATACAGAC 57.897 33.333 0.00 0.00 0.00 3.51
4314 4554 9.102757 ACTGACATCAACATTCAGATAACATAC 57.897 33.333 4.88 0.00 39.36 2.39
4316 4556 7.066645 CCACTGACATCAACATTCAGATAACAT 59.933 37.037 4.88 0.00 39.36 2.71
4318 4558 6.372659 ACCACTGACATCAACATTCAGATAAC 59.627 38.462 4.88 0.00 39.36 1.89
4321 4561 4.914983 ACCACTGACATCAACATTCAGAT 58.085 39.130 4.88 0.00 39.36 2.90
4372 4612 7.525688 TCTCAATTGTAAATACGAAGCTCAG 57.474 36.000 5.13 0.00 0.00 3.35
4392 4632 5.282055 ACTCTCAACATGTCTTGTTCTCA 57.718 39.130 0.00 0.00 45.55 3.27
4393 4633 5.635700 GGTACTCTCAACATGTCTTGTTCTC 59.364 44.000 0.00 0.00 45.55 2.87
4394 4634 5.070446 TGGTACTCTCAACATGTCTTGTTCT 59.930 40.000 0.00 0.00 45.55 3.01
4395 4635 5.297547 TGGTACTCTCAACATGTCTTGTTC 58.702 41.667 0.00 0.00 45.55 3.18
4398 4638 5.352569 GGAATGGTACTCTCAACATGTCTTG 59.647 44.000 0.00 0.00 0.00 3.02
4401 4645 4.832248 TGGAATGGTACTCTCAACATGTC 58.168 43.478 0.00 0.00 0.00 3.06
4413 4657 1.173913 GTGCAACCCTGGAATGGTAC 58.826 55.000 0.00 0.00 31.77 3.34
4416 4660 1.281867 TCTAGTGCAACCCTGGAATGG 59.718 52.381 0.00 0.00 37.80 3.16
4422 4666 2.012673 GCATCTTCTAGTGCAACCCTG 58.987 52.381 0.00 0.00 40.94 4.45
4429 4673 2.964740 TGAGTGTGCATCTTCTAGTGC 58.035 47.619 0.00 0.00 41.61 4.40
4434 4678 4.283363 AGTTCATGAGTGTGCATCTTCT 57.717 40.909 0.00 0.00 0.00 2.85
4437 4681 9.486497 CTATTTATAGTTCATGAGTGTGCATCT 57.514 33.333 0.00 0.00 0.00 2.90
4440 4684 8.257306 TGTCTATTTATAGTTCATGAGTGTGCA 58.743 33.333 0.00 0.00 0.00 4.57
4441 4685 8.648557 TGTCTATTTATAGTTCATGAGTGTGC 57.351 34.615 0.00 0.00 0.00 4.57
4455 4699 9.678941 CGCTAAACTCAGACATGTCTATTTATA 57.321 33.333 27.44 16.18 37.98 0.98
4456 4700 8.414003 TCGCTAAACTCAGACATGTCTATTTAT 58.586 33.333 27.44 15.94 37.98 1.40
4457 4701 7.768240 TCGCTAAACTCAGACATGTCTATTTA 58.232 34.615 27.44 25.20 37.98 1.40
4458 4702 6.631016 TCGCTAAACTCAGACATGTCTATTT 58.369 36.000 27.44 25.39 37.98 1.40
4459 4703 6.208988 TCGCTAAACTCAGACATGTCTATT 57.791 37.500 27.44 20.10 37.98 1.73
4460 4704 5.734786 GCTCGCTAAACTCAGACATGTCTAT 60.735 44.000 27.44 13.60 37.98 1.98
4461 4705 4.438880 GCTCGCTAAACTCAGACATGTCTA 60.439 45.833 27.44 14.76 37.98 2.59
4462 4706 3.674682 GCTCGCTAAACTCAGACATGTCT 60.675 47.826 22.89 22.89 41.37 3.41
4463 4707 2.600867 GCTCGCTAAACTCAGACATGTC 59.399 50.000 18.47 18.47 0.00 3.06
4464 4708 2.029020 TGCTCGCTAAACTCAGACATGT 60.029 45.455 0.00 0.00 0.00 3.21
4465 4709 2.610433 TGCTCGCTAAACTCAGACATG 58.390 47.619 0.00 0.00 0.00 3.21
4466 4710 2.996621 GTTGCTCGCTAAACTCAGACAT 59.003 45.455 0.00 0.00 0.00 3.06
4467 4711 2.404215 GTTGCTCGCTAAACTCAGACA 58.596 47.619 0.00 0.00 0.00 3.41
4468 4712 1.387084 CGTTGCTCGCTAAACTCAGAC 59.613 52.381 0.00 0.00 0.00 3.51
4469 4713 1.000607 ACGTTGCTCGCTAAACTCAGA 60.001 47.619 2.18 0.00 44.19 3.27
4470 4714 1.419374 ACGTTGCTCGCTAAACTCAG 58.581 50.000 2.18 0.00 44.19 3.35
4471 4715 1.790623 GAACGTTGCTCGCTAAACTCA 59.209 47.619 5.00 0.00 44.19 3.41
4472 4716 1.790623 TGAACGTTGCTCGCTAAACTC 59.209 47.619 5.00 0.00 44.19 3.01
4473 4717 1.792949 CTGAACGTTGCTCGCTAAACT 59.207 47.619 5.00 0.00 44.19 2.66
4474 4718 1.525619 ACTGAACGTTGCTCGCTAAAC 59.474 47.619 5.00 0.00 44.19 2.01
4475 4719 1.525197 CACTGAACGTTGCTCGCTAAA 59.475 47.619 5.00 0.00 44.19 1.85
4476 4720 1.136690 CACTGAACGTTGCTCGCTAA 58.863 50.000 5.00 0.00 44.19 3.09
4477 4721 0.031585 ACACTGAACGTTGCTCGCTA 59.968 50.000 5.00 0.00 44.19 4.26
4478 4722 1.215655 GACACTGAACGTTGCTCGCT 61.216 55.000 5.00 0.00 44.19 4.93
4479 4723 1.201825 GACACTGAACGTTGCTCGC 59.798 57.895 5.00 0.00 44.19 5.03
4480 4724 1.714460 GTAGACACTGAACGTTGCTCG 59.286 52.381 5.00 0.00 46.00 5.03
4481 4725 2.981140 GAGTAGACACTGAACGTTGCTC 59.019 50.000 5.00 0.00 34.21 4.26
4482 4726 2.623889 AGAGTAGACACTGAACGTTGCT 59.376 45.455 5.00 0.00 34.21 3.91
4483 4727 2.981140 GAGAGTAGACACTGAACGTTGC 59.019 50.000 5.00 0.00 34.21 4.17
4484 4728 4.491234 AGAGAGTAGACACTGAACGTTG 57.509 45.455 5.00 0.00 34.21 4.10
4485 4729 4.696402 CCTAGAGAGTAGACACTGAACGTT 59.304 45.833 0.00 0.00 34.21 3.99
4486 4730 4.020396 TCCTAGAGAGTAGACACTGAACGT 60.020 45.833 0.00 0.00 34.21 3.99
4487 4731 4.505808 TCCTAGAGAGTAGACACTGAACG 58.494 47.826 0.00 0.00 34.21 3.95
4488 4732 4.334481 GCTCCTAGAGAGTAGACACTGAAC 59.666 50.000 9.20 0.00 45.21 3.18
4489 4733 4.226394 AGCTCCTAGAGAGTAGACACTGAA 59.774 45.833 9.20 0.00 45.21 3.02
4490 4734 3.778075 AGCTCCTAGAGAGTAGACACTGA 59.222 47.826 9.20 0.00 45.21 3.41
4491 4735 3.876914 CAGCTCCTAGAGAGTAGACACTG 59.123 52.174 9.20 4.49 45.21 3.66
4492 4736 3.684413 GCAGCTCCTAGAGAGTAGACACT 60.684 52.174 9.20 0.00 45.21 3.55
4493 4737 2.616842 GCAGCTCCTAGAGAGTAGACAC 59.383 54.545 9.20 0.00 45.21 3.67
4494 4738 2.507886 AGCAGCTCCTAGAGAGTAGACA 59.492 50.000 9.20 0.00 45.21 3.41
4495 4739 2.878406 CAGCAGCTCCTAGAGAGTAGAC 59.122 54.545 0.00 0.17 45.21 2.59
4496 4740 2.158682 CCAGCAGCTCCTAGAGAGTAGA 60.159 54.545 0.00 0.00 45.21 2.59
4497 4741 2.229792 CCAGCAGCTCCTAGAGAGTAG 58.770 57.143 0.00 4.74 45.21 2.57
4498 4742 1.566703 ACCAGCAGCTCCTAGAGAGTA 59.433 52.381 0.00 0.00 45.21 2.59
4499 4743 0.334676 ACCAGCAGCTCCTAGAGAGT 59.665 55.000 0.00 0.00 45.21 3.24
4500 4744 1.032014 GACCAGCAGCTCCTAGAGAG 58.968 60.000 0.00 0.00 46.29 3.20
4501 4745 0.628522 AGACCAGCAGCTCCTAGAGA 59.371 55.000 0.00 0.00 0.00 3.10
4502 4746 2.356665 TAGACCAGCAGCTCCTAGAG 57.643 55.000 0.00 0.00 0.00 2.43
4503 4747 2.091610 ACATAGACCAGCAGCTCCTAGA 60.092 50.000 0.00 0.00 0.00 2.43
4504 4748 2.315176 ACATAGACCAGCAGCTCCTAG 58.685 52.381 0.00 0.00 0.00 3.02
4505 4749 2.461300 ACATAGACCAGCAGCTCCTA 57.539 50.000 0.00 0.00 0.00 2.94
4506 4750 2.461300 TACATAGACCAGCAGCTCCT 57.539 50.000 0.00 0.00 0.00 3.69
4507 4751 3.760580 AATACATAGACCAGCAGCTCC 57.239 47.619 0.00 0.00 0.00 4.70
4508 4752 6.071672 TCAGATAATACATAGACCAGCAGCTC 60.072 42.308 0.00 0.00 0.00 4.09
4509 4753 5.777223 TCAGATAATACATAGACCAGCAGCT 59.223 40.000 0.00 0.00 0.00 4.24
4510 4754 6.030548 TCAGATAATACATAGACCAGCAGC 57.969 41.667 0.00 0.00 0.00 5.25
4511 4755 8.093307 ACATTCAGATAATACATAGACCAGCAG 58.907 37.037 0.00 0.00 0.00 4.24
4512 4756 7.966812 ACATTCAGATAATACATAGACCAGCA 58.033 34.615 0.00 0.00 0.00 4.41
4513 4757 8.715998 CAACATTCAGATAATACATAGACCAGC 58.284 37.037 0.00 0.00 0.00 4.85
4514 4758 9.770097 ACAACATTCAGATAATACATAGACCAG 57.230 33.333 0.00 0.00 0.00 4.00
4523 4767 9.855361 CGAGATCAAACAACATTCAGATAATAC 57.145 33.333 0.00 0.00 0.00 1.89
4524 4768 9.045223 CCGAGATCAAACAACATTCAGATAATA 57.955 33.333 0.00 0.00 0.00 0.98
4525 4769 7.554118 ACCGAGATCAAACAACATTCAGATAAT 59.446 33.333 0.00 0.00 0.00 1.28
4526 4770 6.878923 ACCGAGATCAAACAACATTCAGATAA 59.121 34.615 0.00 0.00 0.00 1.75
4527 4771 6.406370 ACCGAGATCAAACAACATTCAGATA 58.594 36.000 0.00 0.00 0.00 1.98
4528 4772 5.248640 ACCGAGATCAAACAACATTCAGAT 58.751 37.500 0.00 0.00 0.00 2.90
4529 4773 4.641396 ACCGAGATCAAACAACATTCAGA 58.359 39.130 0.00 0.00 0.00 3.27
4530 4774 5.639506 ACTACCGAGATCAAACAACATTCAG 59.360 40.000 0.00 0.00 0.00 3.02
4531 4775 5.547465 ACTACCGAGATCAAACAACATTCA 58.453 37.500 0.00 0.00 0.00 2.57
4532 4776 6.481954 AACTACCGAGATCAAACAACATTC 57.518 37.500 0.00 0.00 0.00 2.67
4533 4777 6.877611 AAACTACCGAGATCAAACAACATT 57.122 33.333 0.00 0.00 0.00 2.71
4534 4778 6.262273 ACAAAACTACCGAGATCAAACAACAT 59.738 34.615 0.00 0.00 0.00 2.71
4535 4779 5.587043 ACAAAACTACCGAGATCAAACAACA 59.413 36.000 0.00 0.00 0.00 3.33
4536 4780 5.907391 CACAAAACTACCGAGATCAAACAAC 59.093 40.000 0.00 0.00 0.00 3.32
4537 4781 5.818336 TCACAAAACTACCGAGATCAAACAA 59.182 36.000 0.00 0.00 0.00 2.83
4538 4782 5.361427 TCACAAAACTACCGAGATCAAACA 58.639 37.500 0.00 0.00 0.00 2.83
4539 4783 5.917541 TCACAAAACTACCGAGATCAAAC 57.082 39.130 0.00 0.00 0.00 2.93
4540 4784 9.878667 TTATATCACAAAACTACCGAGATCAAA 57.121 29.630 0.00 0.00 0.00 2.69
4541 4785 9.309516 GTTATATCACAAAACTACCGAGATCAA 57.690 33.333 0.00 0.00 0.00 2.57
4542 4786 8.471609 TGTTATATCACAAAACTACCGAGATCA 58.528 33.333 0.00 0.00 0.00 2.92
4543 4787 8.753175 GTGTTATATCACAAAACTACCGAGATC 58.247 37.037 8.73 0.00 38.12 2.75
4544 4788 8.255206 TGTGTTATATCACAAAACTACCGAGAT 58.745 33.333 13.10 0.00 43.92 2.75
4545 4789 7.604549 TGTGTTATATCACAAAACTACCGAGA 58.395 34.615 13.10 0.00 43.92 4.04
4546 4790 7.821595 TGTGTTATATCACAAAACTACCGAG 57.178 36.000 13.10 0.00 43.92 4.63
4558 4802 6.255670 TGAAGCTCGACAATGTGTTATATCAC 59.744 38.462 6.94 6.94 38.63 3.06
4559 4803 6.337356 TGAAGCTCGACAATGTGTTATATCA 58.663 36.000 0.00 0.00 0.00 2.15
4560 4804 6.828502 TGAAGCTCGACAATGTGTTATATC 57.171 37.500 0.00 0.00 0.00 1.63
4561 4805 9.494271 AATATGAAGCTCGACAATGTGTTATAT 57.506 29.630 0.00 0.00 0.00 0.86
4562 4806 8.887036 AATATGAAGCTCGACAATGTGTTATA 57.113 30.769 0.00 0.00 0.00 0.98
4563 4807 7.792374 AATATGAAGCTCGACAATGTGTTAT 57.208 32.000 0.00 0.00 0.00 1.89
4564 4808 7.609760 AAATATGAAGCTCGACAATGTGTTA 57.390 32.000 0.00 0.00 0.00 2.41
4565 4809 6.500684 AAATATGAAGCTCGACAATGTGTT 57.499 33.333 0.00 0.00 0.00 3.32
4566 4810 6.593770 TGTAAATATGAAGCTCGACAATGTGT 59.406 34.615 0.00 0.00 0.00 3.72
4567 4811 6.901887 GTGTAAATATGAAGCTCGACAATGTG 59.098 38.462 0.00 0.00 0.00 3.21
4568 4812 6.818644 AGTGTAAATATGAAGCTCGACAATGT 59.181 34.615 0.00 0.00 0.00 2.71
4569 4813 7.239166 AGTGTAAATATGAAGCTCGACAATG 57.761 36.000 0.00 0.00 0.00 2.82
4570 4814 7.549134 TCAAGTGTAAATATGAAGCTCGACAAT 59.451 33.333 0.00 0.00 0.00 2.71
4571 4815 6.871492 TCAAGTGTAAATATGAAGCTCGACAA 59.129 34.615 0.00 0.00 0.00 3.18
4572 4816 6.394809 TCAAGTGTAAATATGAAGCTCGACA 58.605 36.000 0.00 0.00 0.00 4.35
4573 4817 6.752351 TCTCAAGTGTAAATATGAAGCTCGAC 59.248 38.462 0.00 0.00 0.00 4.20
4574 4818 6.863275 TCTCAAGTGTAAATATGAAGCTCGA 58.137 36.000 0.00 0.00 0.00 4.04
4575 4819 7.063426 TGTTCTCAAGTGTAAATATGAAGCTCG 59.937 37.037 0.00 0.00 0.00 5.03
4576 4820 8.256611 TGTTCTCAAGTGTAAATATGAAGCTC 57.743 34.615 0.00 0.00 0.00 4.09
4577 4821 8.621532 TTGTTCTCAAGTGTAAATATGAAGCT 57.378 30.769 0.00 0.00 0.00 3.74
4578 4822 9.677567 TTTTGTTCTCAAGTGTAAATATGAAGC 57.322 29.630 0.00 0.00 34.88 3.86
4585 4829 9.651913 AACACATTTTTGTTCTCAAGTGTAAAT 57.348 25.926 0.00 0.00 37.86 1.40
4586 4830 8.920665 CAACACATTTTTGTTCTCAAGTGTAAA 58.079 29.630 0.00 0.00 37.86 2.01
4587 4831 8.300286 TCAACACATTTTTGTTCTCAAGTGTAA 58.700 29.630 0.00 0.00 37.86 2.41
4588 4832 7.821652 TCAACACATTTTTGTTCTCAAGTGTA 58.178 30.769 0.00 0.00 37.86 2.90
4589 4833 6.686630 TCAACACATTTTTGTTCTCAAGTGT 58.313 32.000 0.00 0.00 39.31 3.55
4590 4834 7.028962 TCTCAACACATTTTTGTTCTCAAGTG 58.971 34.615 0.00 0.00 37.62 3.16
4591 4835 7.156876 TCTCAACACATTTTTGTTCTCAAGT 57.843 32.000 0.00 0.00 37.62 3.16
4592 4836 8.133627 AGATCTCAACACATTTTTGTTCTCAAG 58.866 33.333 0.00 0.00 37.62 3.02
4593 4837 7.999679 AGATCTCAACACATTTTTGTTCTCAA 58.000 30.769 0.00 0.00 37.62 3.02
4594 4838 7.572523 AGATCTCAACACATTTTTGTTCTCA 57.427 32.000 0.00 0.00 37.62 3.27
4595 4839 8.749499 CAAAGATCTCAACACATTTTTGTTCTC 58.251 33.333 0.00 0.00 37.62 2.87
4596 4840 7.223387 GCAAAGATCTCAACACATTTTTGTTCT 59.777 33.333 0.00 0.00 37.62 3.01
4597 4841 7.010367 TGCAAAGATCTCAACACATTTTTGTTC 59.990 33.333 0.00 0.00 37.62 3.18
4598 4842 6.817641 TGCAAAGATCTCAACACATTTTTGTT 59.182 30.769 0.00 0.00 40.46 2.83
4599 4843 6.256321 GTGCAAAGATCTCAACACATTTTTGT 59.744 34.615 13.97 0.00 30.44 2.83
4600 4844 6.477688 AGTGCAAAGATCTCAACACATTTTTG 59.522 34.615 18.63 7.96 30.76 2.44
4601 4845 6.576185 AGTGCAAAGATCTCAACACATTTTT 58.424 32.000 18.63 1.68 0.00 1.94
4602 4846 6.152932 AGTGCAAAGATCTCAACACATTTT 57.847 33.333 18.63 0.00 0.00 1.82
4603 4847 5.779529 AGTGCAAAGATCTCAACACATTT 57.220 34.783 18.63 0.00 0.00 2.32
4604 4848 6.233434 TCTAGTGCAAAGATCTCAACACATT 58.767 36.000 18.63 6.77 0.00 2.71
4605 4849 5.798132 TCTAGTGCAAAGATCTCAACACAT 58.202 37.500 18.63 9.95 0.00 3.21
4606 4850 5.213891 TCTAGTGCAAAGATCTCAACACA 57.786 39.130 18.63 3.21 0.00 3.72
4607 4851 5.641209 ACATCTAGTGCAAAGATCTCAACAC 59.359 40.000 9.35 11.91 31.22 3.32
4608 4852 5.640783 CACATCTAGTGCAAAGATCTCAACA 59.359 40.000 9.35 0.00 42.15 3.33
4609 4853 6.104439 CACATCTAGTGCAAAGATCTCAAC 57.896 41.667 9.35 0.00 42.15 3.18
4623 4867 6.537453 AGTTACTTCATGAGCACATCTAGT 57.463 37.500 10.90 10.90 34.15 2.57
4624 4868 7.647318 CACTAGTTACTTCATGAGCACATCTAG 59.353 40.741 14.99 14.99 34.15 2.43
4625 4869 7.339466 TCACTAGTTACTTCATGAGCACATCTA 59.661 37.037 0.00 0.00 34.15 1.98
4626 4870 6.153510 TCACTAGTTACTTCATGAGCACATCT 59.846 38.462 0.00 0.00 34.15 2.90
4627 4871 6.333416 TCACTAGTTACTTCATGAGCACATC 58.667 40.000 0.00 0.00 34.15 3.06
4628 4872 6.286240 TCACTAGTTACTTCATGAGCACAT 57.714 37.500 0.00 0.00 37.19 3.21
4629 4873 5.722021 TCACTAGTTACTTCATGAGCACA 57.278 39.130 0.00 0.00 0.00 4.57
4630 4874 6.159988 ACTTCACTAGTTACTTCATGAGCAC 58.840 40.000 0.00 0.00 31.29 4.40
4631 4875 6.346477 ACTTCACTAGTTACTTCATGAGCA 57.654 37.500 0.00 0.00 31.29 4.26
4632 4876 7.763356 TCTACTTCACTAGTTACTTCATGAGC 58.237 38.462 0.00 0.00 38.33 4.26
4773 5019 2.147387 ACACAGGGGAAGAAGCCGT 61.147 57.895 0.00 0.00 0.00 5.68
4897 5143 1.248486 CACTGGACGAGAAGACCTCA 58.752 55.000 0.00 0.00 42.06 3.86
4930 5176 0.035458 CTCCGGTATCCATGCTTCCC 59.965 60.000 0.00 0.00 0.00 3.97
4933 5179 1.451936 GCCTCCGGTATCCATGCTT 59.548 57.895 0.00 0.00 0.00 3.91
4937 5183 1.843376 CCAGGCCTCCGGTATCCAT 60.843 63.158 0.00 0.00 0.00 3.41
4942 5188 2.850851 AATTCCCCAGGCCTCCGGTA 62.851 60.000 0.00 0.00 0.00 4.02
4961 5207 2.285668 CTCCTCTTCCAGGGCCCA 60.286 66.667 27.56 0.00 43.67 5.36
4962 5208 2.041265 TCTCCTCTTCCAGGGCCC 59.959 66.667 16.46 16.46 43.67 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.