Multiple sequence alignment - TraesCS3A01G048000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G048000 chr3A 100.000 4075 0 0 1 4075 25501937 25497863 0.000000e+00 7526.0
1 TraesCS3A01G048000 chr3D 87.827 3672 205 118 501 4075 11574661 11578187 0.000000e+00 4082.0
2 TraesCS3A01G048000 chr3D 87.117 326 27 11 148 469 11574347 11574661 5.010000e-94 355.0
3 TraesCS3A01G048000 chr3D 77.778 126 13 9 30 141 11574103 11574227 3.400000e-06 63.9
4 TraesCS3A01G048000 chr3B 86.722 3630 229 121 563 4075 16212704 16216197 0.000000e+00 3799.0
5 TraesCS3A01G048000 chr1B 84.244 311 21 12 1045 1338 7249766 7249467 1.120000e-70 278.0
6 TraesCS3A01G048000 chr6D 97.273 110 3 0 1229 1338 282609097 282609206 1.930000e-43 187.0
7 TraesCS3A01G048000 chr6D 97.297 37 0 1 30 65 76350423 76350459 1.220000e-05 62.1
8 TraesCS3A01G048000 chrUn 97.297 37 0 1 30 65 10222142 10222106 1.220000e-05 62.1
9 TraesCS3A01G048000 chr7D 97.297 37 0 1 30 65 558366391 558366355 1.220000e-05 62.1
10 TraesCS3A01G048000 chr4D 97.297 37 0 1 30 65 306581778 306581814 1.220000e-05 62.1
11 TraesCS3A01G048000 chr2D 97.297 37 0 1 30 65 291007122 291007158 1.220000e-05 62.1
12 TraesCS3A01G048000 chr2D 97.297 37 0 1 30 65 541200942 541200978 1.220000e-05 62.1
13 TraesCS3A01G048000 chr1D 97.297 37 0 1 30 65 190343985 190343949 1.220000e-05 62.1
14 TraesCS3A01G048000 chr1D 84.615 65 4 3 30 88 35491717 35491653 4.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G048000 chr3A 25497863 25501937 4074 True 7526.0 7526 100.000000 1 4075 1 chr3A.!!$R1 4074
1 TraesCS3A01G048000 chr3D 11574103 11578187 4084 False 1500.3 4082 84.240667 30 4075 3 chr3D.!!$F1 4045
2 TraesCS3A01G048000 chr3B 16212704 16216197 3493 False 3799.0 3799 86.722000 563 4075 1 chr3B.!!$F1 3512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 809 0.029267 AGGATGGAAGAGATGGCCCT 60.029 55.0 0.0 0.0 0.0 5.19 F
1147 1330 0.033601 TTCTTGGTGTGGTGGTGCTT 60.034 50.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 2806 0.251341 GATGGTGGTTGTTCCCTGCT 60.251 55.0 0.0 0.0 34.77 4.24 R
3130 3426 0.036765 TCACCATTCACCGCTACCAC 60.037 55.0 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 76 6.828785 ACTTTATGGTACCATGAATCTTCCAC 59.171 38.462 33.41 0.00 37.82 4.02
78 85 2.862541 TGAATCTTCCACCCACAACAG 58.137 47.619 0.00 0.00 0.00 3.16
83 90 2.507886 TCTTCCACCCACAACAGAAGAA 59.492 45.455 0.00 0.00 39.84 2.52
87 94 2.362077 CCACCCACAACAGAAGAAAAGG 59.638 50.000 0.00 0.00 0.00 3.11
88 95 3.287222 CACCCACAACAGAAGAAAAGGA 58.713 45.455 0.00 0.00 0.00 3.36
89 96 3.316308 CACCCACAACAGAAGAAAAGGAG 59.684 47.826 0.00 0.00 0.00 3.69
90 97 2.887152 CCCACAACAGAAGAAAAGGAGG 59.113 50.000 0.00 0.00 0.00 4.30
91 98 3.555966 CCACAACAGAAGAAAAGGAGGT 58.444 45.455 0.00 0.00 0.00 3.85
92 99 3.316308 CCACAACAGAAGAAAAGGAGGTG 59.684 47.826 0.00 0.00 0.00 4.00
94 101 4.399303 CACAACAGAAGAAAAGGAGGTGTT 59.601 41.667 0.00 0.00 0.00 3.32
96 103 6.094881 CACAACAGAAGAAAAGGAGGTGTTAA 59.905 38.462 0.00 0.00 0.00 2.01
97 104 6.095021 ACAACAGAAGAAAAGGAGGTGTTAAC 59.905 38.462 0.00 0.00 0.00 2.01
99 106 5.823045 ACAGAAGAAAAGGAGGTGTTAACAG 59.177 40.000 8.98 0.00 0.00 3.16
107 119 4.579869 AGGAGGTGTTAACAGTGCATTAG 58.420 43.478 8.98 0.00 0.00 1.73
117 129 4.970662 ACAGTGCATTAGTGGCTAATTG 57.029 40.909 0.00 0.00 34.83 2.32
121 133 4.094887 AGTGCATTAGTGGCTAATTGAACG 59.905 41.667 0.00 0.00 34.83 3.95
123 135 3.243068 GCATTAGTGGCTAATTGAACGGG 60.243 47.826 0.00 0.00 34.83 5.28
124 136 3.706600 TTAGTGGCTAATTGAACGGGT 57.293 42.857 0.00 0.00 0.00 5.28
126 138 1.628846 AGTGGCTAATTGAACGGGTCT 59.371 47.619 0.00 0.00 0.00 3.85
127 139 2.007608 GTGGCTAATTGAACGGGTCTC 58.992 52.381 0.00 0.00 0.00 3.36
135 148 2.178912 TGAACGGGTCTCACCAATTC 57.821 50.000 0.00 0.00 41.02 2.17
150 163 3.313690 CCAATTCGGTTTGGTTTGTAGC 58.686 45.455 8.59 0.00 41.09 3.58
151 164 3.243569 CCAATTCGGTTTGGTTTGTAGCA 60.244 43.478 8.59 0.00 41.09 3.49
152 165 3.915437 ATTCGGTTTGGTTTGTAGCAG 57.085 42.857 0.00 0.00 32.55 4.24
154 167 0.385473 CGGTTTGGTTTGTAGCAGCG 60.385 55.000 0.00 0.00 32.55 5.18
165 291 0.811616 GTAGCAGCGGACCATCAAGG 60.812 60.000 0.00 0.00 45.67 3.61
207 333 0.606401 CATGTTCTTCACCGGCCACT 60.606 55.000 0.00 0.00 0.00 4.00
211 337 2.358737 CTTCACCGGCCACTGGTC 60.359 66.667 0.00 0.00 37.72 4.02
220 346 1.670406 GCCACTGGTCAGTCAGCTG 60.670 63.158 7.63 7.63 40.20 4.24
222 348 1.370437 CACTGGTCAGTCAGCTGCT 59.630 57.895 9.47 6.85 42.29 4.24
235 361 5.067153 CAGTCAGCTGCTACTATTGTACTCT 59.933 44.000 9.47 0.00 35.77 3.24
236 362 6.261158 CAGTCAGCTGCTACTATTGTACTCTA 59.739 42.308 9.47 0.00 35.77 2.43
239 365 8.952278 GTCAGCTGCTACTATTGTACTCTATAT 58.048 37.037 9.47 0.00 0.00 0.86
261 387 4.128139 GTGTACAACACGCACCCA 57.872 55.556 0.00 0.00 39.53 4.51
263 389 1.883544 TGTACAACACGCACCCACG 60.884 57.895 0.00 0.00 39.50 4.94
265 391 0.597118 GTACAACACGCACCCACGTA 60.597 55.000 0.00 0.00 46.34 3.57
266 392 0.318869 TACAACACGCACCCACGTAG 60.319 55.000 0.00 0.00 46.34 3.51
267 393 2.029964 AACACGCACCCACGTAGG 59.970 61.111 0.00 0.00 46.34 3.18
282 408 3.129813 CACGTAGGGTCATTAGTGTAGCA 59.870 47.826 0.00 0.00 0.00 3.49
292 418 2.495155 TAGTGTAGCACTGGACCGTA 57.505 50.000 11.57 0.00 45.01 4.02
294 420 0.886563 GTGTAGCACTGGACCGTAGT 59.113 55.000 0.00 0.00 0.00 2.73
299 425 3.001406 ACTGGACCGTAGTGCCCC 61.001 66.667 0.00 0.00 32.35 5.80
300 426 3.782443 CTGGACCGTAGTGCCCCC 61.782 72.222 0.00 0.00 32.35 5.40
301 427 4.326227 TGGACCGTAGTGCCCCCT 62.326 66.667 0.00 0.00 32.35 4.79
302 428 3.468140 GGACCGTAGTGCCCCCTC 61.468 72.222 0.00 0.00 0.00 4.30
303 429 2.682494 GACCGTAGTGCCCCCTCA 60.682 66.667 0.00 0.00 0.00 3.86
306 432 2.589157 CCGTAGTGCCCCCTCACAA 61.589 63.158 0.00 0.00 39.35 3.33
319 445 5.104982 GCCCCCTCACAAAATTTTATCATGA 60.105 40.000 2.44 0.00 0.00 3.07
337 463 9.778741 TTATCATGATACAAACCCATAGTTCTC 57.221 33.333 15.10 0.00 37.88 2.87
349 475 0.474854 TAGTTCTCCCCCACTGCCAA 60.475 55.000 0.00 0.00 0.00 4.52
357 483 1.055040 CCCCACTGCCAATTCCAAAA 58.945 50.000 0.00 0.00 0.00 2.44
374 500 0.417035 AAATCCAAAGCCCATCCCCA 59.583 50.000 0.00 0.00 0.00 4.96
377 503 1.989508 CCAAAGCCCATCCCCAACC 60.990 63.158 0.00 0.00 0.00 3.77
390 516 4.351054 CAACCCGGCCAGCCTCTT 62.351 66.667 2.24 0.00 0.00 2.85
408 534 0.115152 TTCAGACAGCCTCCTGGAGA 59.885 55.000 25.18 0.00 43.53 3.71
423 549 5.394738 TCCTGGAGAGACTACAAAAGAAGA 58.605 41.667 0.00 0.00 0.00 2.87
462 588 0.179137 TATCCTGACAAGAGCGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
465 591 3.287121 CTGACAAGAGCGTGCGTGC 62.287 63.158 0.00 0.00 0.00 5.34
468 594 4.707840 CAAGAGCGTGCGTGCGTG 62.708 66.667 3.11 0.00 40.67 5.34
474 600 4.918060 CGTGCGTGCGTGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
475 601 3.860125 GTGCGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
476 602 3.858989 TGCGTGCGTGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
477 603 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
478 604 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
479 605 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
480 606 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
481 607 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
482 608 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
483 609 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
484 610 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
485 611 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
486 612 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
487 613 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
488 614 1.128507 GTGTGTGTGTGTGTGTGTGAG 59.871 52.381 0.00 0.00 0.00 3.51
489 615 1.001406 TGTGTGTGTGTGTGTGTGAGA 59.999 47.619 0.00 0.00 0.00 3.27
490 616 1.660607 GTGTGTGTGTGTGTGTGAGAG 59.339 52.381 0.00 0.00 0.00 3.20
491 617 1.548269 TGTGTGTGTGTGTGTGAGAGA 59.452 47.619 0.00 0.00 0.00 3.10
492 618 2.196749 GTGTGTGTGTGTGTGAGAGAG 58.803 52.381 0.00 0.00 0.00 3.20
493 619 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
494 620 2.099756 TGTGTGTGTGTGTGAGAGAGAG 59.900 50.000 0.00 0.00 0.00 3.20
495 621 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
496 622 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
497 623 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
498 624 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
499 625 3.181450 TGTGTGTGTGAGAGAGAGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
510 636 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
540 666 2.160205 CCACACTGTCCTAACGAGAGA 58.840 52.381 0.00 0.00 35.41 3.10
557 683 3.761218 GAGAGAGTGTGAGACAATGAGGA 59.239 47.826 0.00 0.00 0.00 3.71
558 684 3.763360 AGAGAGTGTGAGACAATGAGGAG 59.237 47.826 0.00 0.00 0.00 3.69
560 686 1.277557 AGTGTGAGACAATGAGGAGGC 59.722 52.381 0.00 0.00 0.00 4.70
607 733 2.226912 GTGCGGTACAAACCTTGCAATA 59.773 45.455 0.00 0.00 41.81 1.90
610 736 4.700692 TGCGGTACAAACCTTGCAATATAA 59.299 37.500 0.00 0.00 44.35 0.98
612 738 6.127591 TGCGGTACAAACCTTGCAATATAATT 60.128 34.615 0.00 0.00 44.35 1.40
667 797 1.762460 GGCGAAGGAGGAGGATGGA 60.762 63.158 0.00 0.00 0.00 3.41
668 798 1.338136 GGCGAAGGAGGAGGATGGAA 61.338 60.000 0.00 0.00 0.00 3.53
669 799 0.105778 GCGAAGGAGGAGGATGGAAG 59.894 60.000 0.00 0.00 0.00 3.46
670 800 1.781786 CGAAGGAGGAGGATGGAAGA 58.218 55.000 0.00 0.00 0.00 2.87
671 801 1.686052 CGAAGGAGGAGGATGGAAGAG 59.314 57.143 0.00 0.00 0.00 2.85
672 802 2.688214 CGAAGGAGGAGGATGGAAGAGA 60.688 54.545 0.00 0.00 0.00 3.10
673 803 3.586429 GAAGGAGGAGGATGGAAGAGAT 58.414 50.000 0.00 0.00 0.00 2.75
674 804 2.975075 AGGAGGAGGATGGAAGAGATG 58.025 52.381 0.00 0.00 0.00 2.90
675 805 1.977129 GGAGGAGGATGGAAGAGATGG 59.023 57.143 0.00 0.00 0.00 3.51
676 806 1.347378 GAGGAGGATGGAAGAGATGGC 59.653 57.143 0.00 0.00 0.00 4.40
677 807 0.399833 GGAGGATGGAAGAGATGGCC 59.600 60.000 0.00 0.00 0.00 5.36
678 808 0.399833 GAGGATGGAAGAGATGGCCC 59.600 60.000 0.00 0.00 0.00 5.80
679 809 0.029267 AGGATGGAAGAGATGGCCCT 60.029 55.000 0.00 0.00 0.00 5.19
680 810 0.399833 GGATGGAAGAGATGGCCCTC 59.600 60.000 0.00 0.00 0.00 4.30
681 811 0.399833 GATGGAAGAGATGGCCCTCC 59.600 60.000 0.00 0.00 33.76 4.30
682 812 1.064824 ATGGAAGAGATGGCCCTCCC 61.065 60.000 0.00 0.00 33.76 4.30
683 813 2.456443 GGAAGAGATGGCCCTCCCC 61.456 68.421 0.00 1.29 33.76 4.81
684 814 1.385206 GAAGAGATGGCCCTCCCCT 60.385 63.158 0.00 0.00 33.76 4.79
685 815 1.385206 AAGAGATGGCCCTCCCCTC 60.385 63.158 0.00 0.00 33.76 4.30
686 816 2.040464 GAGATGGCCCTCCCCTCA 60.040 66.667 0.00 0.00 33.73 3.86
687 817 2.367512 AGATGGCCCTCCCCTCAC 60.368 66.667 0.00 0.00 31.22 3.51
688 818 3.866582 GATGGCCCTCCCCTCACG 61.867 72.222 0.00 0.00 0.00 4.35
735 865 5.604650 AGTGAGATTATAAGAAGAGTGGGGG 59.395 44.000 0.00 0.00 0.00 5.40
749 879 4.798682 GGGGGAGAGCGGGAGGAA 62.799 72.222 0.00 0.00 0.00 3.36
750 880 3.157949 GGGGAGAGCGGGAGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
751 881 3.157949 GGGAGAGCGGGAGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
752 882 2.042843 GGAGAGCGGGAGGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
844 993 0.179043 TGCAACGGTACAAGAGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
914 1063 4.675303 CTCCCCCTCCCACACCCA 62.675 72.222 0.00 0.00 0.00 4.51
915 1064 4.995058 TCCCCCTCCCACACCCAC 62.995 72.222 0.00 0.00 0.00 4.61
917 1066 3.966543 CCCCTCCCACACCCACAC 61.967 72.222 0.00 0.00 0.00 3.82
918 1067 3.174987 CCCTCCCACACCCACACA 61.175 66.667 0.00 0.00 0.00 3.72
943 1092 0.540830 ACACACGCTCTCTTCCTCCT 60.541 55.000 0.00 0.00 0.00 3.69
944 1093 0.172352 CACACGCTCTCTTCCTCCTC 59.828 60.000 0.00 0.00 0.00 3.71
947 1099 1.076339 CGCTCTCTTCCTCCTCCCT 60.076 63.158 0.00 0.00 0.00 4.20
950 1102 2.028996 GCTCTCTTCCTCCTCCCTCTG 61.029 61.905 0.00 0.00 0.00 3.35
965 1117 1.138568 CTCTGCCTCCATTCTCCCAT 58.861 55.000 0.00 0.00 0.00 4.00
980 1132 0.379669 CCCATAGAAAGCTTGCGCAG 59.620 55.000 11.31 6.32 39.10 5.18
1008 1171 1.654317 GCTCTGCAGAGATGACCAAG 58.346 55.000 41.20 17.43 44.74 3.61
1046 1209 1.763545 GGTCAAGATCCAGGTACCTCC 59.236 57.143 12.84 2.78 0.00 4.30
1065 1230 1.415716 CCCTCTCCATCCATCCCTCTT 60.416 57.143 0.00 0.00 0.00 2.85
1066 1231 1.698532 CCTCTCCATCCATCCCTCTTG 59.301 57.143 0.00 0.00 0.00 3.02
1067 1232 1.698532 CTCTCCATCCATCCCTCTTGG 59.301 57.143 0.00 0.00 35.45 3.61
1068 1233 0.110104 CTCCATCCATCCCTCTTGGC 59.890 60.000 0.00 0.00 34.06 4.52
1069 1234 0.624206 TCCATCCATCCCTCTTGGCA 60.624 55.000 0.00 0.00 34.06 4.92
1071 1236 0.549950 CATCCATCCCTCTTGGCACT 59.450 55.000 0.00 0.00 34.06 4.40
1082 1247 2.303022 CTCTTGGCACTCCCTCTGTTTA 59.697 50.000 0.00 0.00 0.00 2.01
1084 1249 3.330701 TCTTGGCACTCCCTCTGTTTATT 59.669 43.478 0.00 0.00 0.00 1.40
1086 1251 3.686016 TGGCACTCCCTCTGTTTATTTC 58.314 45.455 0.00 0.00 0.00 2.17
1088 1253 4.202567 TGGCACTCCCTCTGTTTATTTCTT 60.203 41.667 0.00 0.00 0.00 2.52
1090 1255 5.106118 GGCACTCCCTCTGTTTATTTCTTTC 60.106 44.000 0.00 0.00 0.00 2.62
1092 1257 6.207614 GCACTCCCTCTGTTTATTTCTTTCTT 59.792 38.462 0.00 0.00 0.00 2.52
1093 1258 7.255625 GCACTCCCTCTGTTTATTTCTTTCTTT 60.256 37.037 0.00 0.00 0.00 2.52
1094 1259 8.633561 CACTCCCTCTGTTTATTTCTTTCTTTT 58.366 33.333 0.00 0.00 0.00 2.27
1095 1260 8.851145 ACTCCCTCTGTTTATTTCTTTCTTTTC 58.149 33.333 0.00 0.00 0.00 2.29
1096 1261 8.996651 TCCCTCTGTTTATTTCTTTCTTTTCT 57.003 30.769 0.00 0.00 0.00 2.52
1097 1262 9.067986 TCCCTCTGTTTATTTCTTTCTTTTCTC 57.932 33.333 0.00 0.00 0.00 2.87
1109 1292 7.353414 TCTTTCTTTTCTCTCTCTCTTGTGA 57.647 36.000 0.00 0.00 0.00 3.58
1117 1300 2.308570 TCTCTCTCTTGTGAGGAGCTCT 59.691 50.000 14.64 0.00 40.58 4.09
1118 1301 2.424601 CTCTCTCTTGTGAGGAGCTCTG 59.575 54.545 14.64 0.00 40.58 3.35
1120 1303 0.896923 CTCTTGTGAGGAGCTCTGCT 59.103 55.000 14.64 2.45 43.88 4.24
1137 1320 2.684881 CTGCTCAAACTGTTCTTGGTGT 59.315 45.455 0.00 0.00 0.00 4.16
1138 1321 2.423185 TGCTCAAACTGTTCTTGGTGTG 59.577 45.455 0.00 0.00 0.00 3.82
1139 1322 2.223572 GCTCAAACTGTTCTTGGTGTGG 60.224 50.000 0.00 0.00 0.00 4.17
1140 1323 3.016736 CTCAAACTGTTCTTGGTGTGGT 58.983 45.455 0.00 0.00 0.00 4.16
1141 1324 2.752354 TCAAACTGTTCTTGGTGTGGTG 59.248 45.455 0.00 0.00 0.00 4.17
1142 1325 1.762708 AACTGTTCTTGGTGTGGTGG 58.237 50.000 0.00 0.00 0.00 4.61
1143 1326 0.623723 ACTGTTCTTGGTGTGGTGGT 59.376 50.000 0.00 0.00 0.00 4.16
1144 1327 1.024271 CTGTTCTTGGTGTGGTGGTG 58.976 55.000 0.00 0.00 0.00 4.17
1145 1328 1.034838 TGTTCTTGGTGTGGTGGTGC 61.035 55.000 0.00 0.00 0.00 5.01
1146 1329 0.751643 GTTCTTGGTGTGGTGGTGCT 60.752 55.000 0.00 0.00 0.00 4.40
1147 1330 0.033601 TTCTTGGTGTGGTGGTGCTT 60.034 50.000 0.00 0.00 0.00 3.91
1148 1331 0.751277 TCTTGGTGTGGTGGTGCTTG 60.751 55.000 0.00 0.00 0.00 4.01
1149 1332 1.737355 CTTGGTGTGGTGGTGCTTGG 61.737 60.000 0.00 0.00 0.00 3.61
1150 1333 2.912025 GGTGTGGTGGTGCTTGGG 60.912 66.667 0.00 0.00 0.00 4.12
1151 1334 2.194597 GTGTGGTGGTGCTTGGGA 59.805 61.111 0.00 0.00 0.00 4.37
1152 1335 1.228552 GTGTGGTGGTGCTTGGGAT 60.229 57.895 0.00 0.00 0.00 3.85
1153 1336 0.827507 GTGTGGTGGTGCTTGGGATT 60.828 55.000 0.00 0.00 0.00 3.01
1168 1351 0.110104 GGATTGGGAGGGAGCTCATG 59.890 60.000 17.19 0.00 0.00 3.07
1192 1375 2.695147 CTGTTCTTGTTTCTTGGGGCTT 59.305 45.455 0.00 0.00 0.00 4.35
1280 1472 1.271054 GGTCAAGAAGCTGCTCCAGAA 60.271 52.381 1.00 0.00 32.44 3.02
1308 1506 0.736325 GTACACACACGCCCAGCTAG 60.736 60.000 0.00 0.00 0.00 3.42
1340 1546 3.640029 CCTTCCAATCCAATCCAATCCTG 59.360 47.826 0.00 0.00 0.00 3.86
1342 1548 1.338973 CCAATCCAATCCAATCCTGCG 59.661 52.381 0.00 0.00 0.00 5.18
1346 1552 1.176527 CCAATCCAATCCTGCGTGTT 58.823 50.000 0.00 0.00 0.00 3.32
1358 1564 0.380378 TGCGTGTTCTTTCTGTTGGC 59.620 50.000 0.00 0.00 0.00 4.52
1365 1571 2.554462 GTTCTTTCTGTTGGCTCCTTCC 59.446 50.000 0.00 0.00 0.00 3.46
1366 1572 2.057922 TCTTTCTGTTGGCTCCTTCCT 58.942 47.619 0.00 0.00 0.00 3.36
1367 1573 2.443255 TCTTTCTGTTGGCTCCTTCCTT 59.557 45.455 0.00 0.00 0.00 3.36
1368 1574 2.276732 TTCTGTTGGCTCCTTCCTTG 57.723 50.000 0.00 0.00 0.00 3.61
1369 1575 0.250901 TCTGTTGGCTCCTTCCTTGC 60.251 55.000 0.00 0.00 0.00 4.01
1370 1576 0.251077 CTGTTGGCTCCTTCCTTGCT 60.251 55.000 0.00 0.00 0.00 3.91
1371 1577 0.538057 TGTTGGCTCCTTCCTTGCTG 60.538 55.000 0.00 0.00 0.00 4.41
1372 1578 1.604593 TTGGCTCCTTCCTTGCTGC 60.605 57.895 0.00 0.00 0.00 5.25
1420 1626 0.250467 CTGCTGGTGGTGCTACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
1440 1651 5.766150 TGTTTGCTGTTGTTGTTATAGCT 57.234 34.783 0.00 0.00 35.50 3.32
1444 1655 3.009033 TGCTGTTGTTGTTATAGCTCCCT 59.991 43.478 0.00 0.00 35.50 4.20
1449 1660 5.938125 TGTTGTTGTTATAGCTCCCTCTTTC 59.062 40.000 0.00 0.00 0.00 2.62
1452 1663 6.407202 TGTTGTTATAGCTCCCTCTTTCTTC 58.593 40.000 0.00 0.00 0.00 2.87
1453 1664 6.213600 TGTTGTTATAGCTCCCTCTTTCTTCT 59.786 38.462 0.00 0.00 0.00 2.85
1454 1665 6.472686 TGTTATAGCTCCCTCTTTCTTCTC 57.527 41.667 0.00 0.00 0.00 2.87
1455 1666 6.198639 TGTTATAGCTCCCTCTTTCTTCTCT 58.801 40.000 0.00 0.00 0.00 3.10
1461 1672 4.241681 CTCCCTCTTTCTTCTCTTTGACG 58.758 47.826 0.00 0.00 0.00 4.35
1493 1724 5.646360 TGCTGTAACTGTTAATAAAGGCCTC 59.354 40.000 5.23 0.00 0.00 4.70
1502 1733 5.047377 TGTTAATAAAGGCCTCAAGCTTTGG 60.047 40.000 5.23 10.15 40.45 3.28
1503 1734 1.923356 TAAAGGCCTCAAGCTTTGGG 58.077 50.000 5.23 12.25 40.45 4.12
1528 1759 1.001764 CTGCCCACTTGCATCTGGA 60.002 57.895 11.04 0.00 41.16 3.86
1529 1760 1.303561 TGCCCACTTGCATCTGGAC 60.304 57.895 11.04 1.20 36.04 4.02
1536 1767 2.227388 CACTTGCATCTGGACCTGAAAC 59.773 50.000 5.03 1.54 0.00 2.78
1595 1826 5.166398 CAAGAAATCCCTGCTTTTCATGTC 58.834 41.667 0.00 0.00 34.91 3.06
1607 1838 0.107703 TTCATGTCGTCAGGGCCATC 60.108 55.000 6.18 0.00 0.00 3.51
1627 1860 6.513393 GCCATCCTAATTAAATGTTCAGACCG 60.513 42.308 6.71 0.00 0.00 4.79
1631 1864 8.433421 TCCTAATTAAATGTTCAGACCGAATC 57.567 34.615 0.00 0.00 35.63 2.52
1739 1982 6.791867 TTATGTAGTAGCTGAGGTGATTGT 57.208 37.500 0.00 0.00 0.00 2.71
1744 1987 2.645838 AGCTGAGGTGATTGTTGTGT 57.354 45.000 0.00 0.00 0.00 3.72
1764 2007 0.443869 CGAATCTCACAAACGGCTGG 59.556 55.000 0.00 0.00 0.00 4.85
1828 2080 0.602106 CACCCAGACTCACTGCACAG 60.602 60.000 0.00 0.00 44.52 3.66
1833 2085 0.678395 AGACTCACTGCACAGACCTG 59.322 55.000 4.31 0.00 0.00 4.00
1836 2088 0.533531 CTCACTGCACAGACCTGCAA 60.534 55.000 4.31 0.00 46.46 4.08
1858 2111 7.121020 TGCAAATCTTGTGATGCTTCATTAGTA 59.879 33.333 5.49 0.00 33.56 1.82
1910 2170 0.176910 TCACGAGCAACCTGTGAACA 59.823 50.000 0.00 0.00 39.50 3.18
1988 2251 1.445942 CCACAAGGTCACGGTGACT 59.554 57.895 33.00 20.03 46.19 3.41
2057 2320 2.029518 CACGCAGAGCTGTGGTCA 59.970 61.111 13.44 0.00 44.78 4.02
2074 2337 4.335647 ACACCAGAAGGGCGGCAG 62.336 66.667 12.47 0.00 42.05 4.85
2110 2379 3.469247 CCACAAGGGCAATGGCAA 58.531 55.556 9.51 0.00 43.71 4.52
2264 2542 4.201122 GGGAGCCTCATGCAGGGG 62.201 72.222 0.00 0.00 43.70 4.79
2321 2599 1.760086 CCCTGACCTGAGCTCGGAT 60.760 63.158 24.60 6.62 0.00 4.18
2351 2632 9.531942 GAAGATGATATGTATGATGATGAGGAC 57.468 37.037 0.00 0.00 0.00 3.85
2354 2635 6.856895 TGATATGTATGATGATGAGGACGAC 58.143 40.000 0.00 0.00 0.00 4.34
2357 2638 3.630312 TGTATGATGATGAGGACGACGAA 59.370 43.478 0.00 0.00 0.00 3.85
2735 3022 1.305887 CCACCCTTCCTCCTACGGT 60.306 63.158 0.00 0.00 0.00 4.83
2927 3223 1.148157 CGCAGATCAGCCCTTACACG 61.148 60.000 4.32 0.00 0.00 4.49
3130 3426 1.227497 GAGCTTGGGCGATGAGGAG 60.227 63.158 0.00 0.00 44.37 3.69
3137 3434 1.068250 GGCGATGAGGAGTGGTAGC 59.932 63.158 0.00 0.00 0.00 3.58
3250 3548 1.474077 GGTGTTGACTTGGGATGATGC 59.526 52.381 0.00 0.00 0.00 3.91
3271 3569 3.423206 GCGCTGTTTGAAACTGAATGAAG 59.577 43.478 17.42 2.53 32.71 3.02
3281 3579 1.171308 CTGAATGAAGGCAGTGGTGG 58.829 55.000 0.00 0.00 0.00 4.61
3289 3587 3.348236 GCAGTGGTGGCACTTCAG 58.652 61.111 18.45 8.81 32.26 3.02
3290 3588 1.227943 GCAGTGGTGGCACTTCAGA 60.228 57.895 18.45 0.00 32.26 3.27
3291 3589 1.233285 GCAGTGGTGGCACTTCAGAG 61.233 60.000 18.45 4.61 32.26 3.35
3292 3590 0.604780 CAGTGGTGGCACTTCAGAGG 60.605 60.000 18.45 0.00 32.26 3.69
3293 3591 0.764369 AGTGGTGGCACTTCAGAGGA 60.764 55.000 18.45 0.00 29.93 3.71
3294 3592 0.326264 GTGGTGGCACTTCAGAGGAT 59.674 55.000 18.45 0.00 0.00 3.24
3295 3593 0.325933 TGGTGGCACTTCAGAGGATG 59.674 55.000 18.45 0.00 0.00 3.51
3296 3594 0.615331 GGTGGCACTTCAGAGGATGA 59.385 55.000 18.45 0.00 35.62 2.92
3297 3595 1.211457 GGTGGCACTTCAGAGGATGAT 59.789 52.381 18.45 0.00 37.89 2.45
3298 3596 2.286872 GTGGCACTTCAGAGGATGATG 58.713 52.381 11.13 0.00 37.89 3.07
3299 3597 2.093288 GTGGCACTTCAGAGGATGATGA 60.093 50.000 11.13 0.00 37.89 2.92
3300 3598 2.775960 TGGCACTTCAGAGGATGATGAT 59.224 45.455 0.00 0.00 37.89 2.45
3301 3599 3.181457 TGGCACTTCAGAGGATGATGATC 60.181 47.826 0.00 0.00 37.89 2.92
3302 3600 3.181457 GGCACTTCAGAGGATGATGATCA 60.181 47.826 0.00 0.00 37.89 2.92
3303 3601 4.449131 GCACTTCAGAGGATGATGATCAA 58.551 43.478 0.00 0.00 37.89 2.57
3304 3602 4.512198 GCACTTCAGAGGATGATGATCAAG 59.488 45.833 0.00 0.00 37.89 3.02
3305 3603 4.512198 CACTTCAGAGGATGATGATCAAGC 59.488 45.833 0.00 0.00 37.89 4.01
3315 3613 4.541973 TGATGATCAAGCTGTGTAGTGT 57.458 40.909 0.00 0.00 0.00 3.55
3350 3650 2.443577 TGCCTTGTGCTTTGGCCA 60.444 55.556 0.00 0.00 45.56 5.36
3373 3673 0.329261 CCTCTGAGGCCATGACCAAA 59.671 55.000 11.42 0.00 0.00 3.28
3464 3772 0.183971 AAATTGTCCCACACCGTCCA 59.816 50.000 0.00 0.00 0.00 4.02
3470 3778 1.302511 CCCACACCGTCCAAAGGAG 60.303 63.158 0.00 0.00 29.39 3.69
3484 3792 3.506455 CCAAAGGAGGATCATCATCATGC 59.494 47.826 9.94 0.00 36.25 4.06
3676 4002 3.815809 ACTGTCGAGAGAATAGGAGAGG 58.184 50.000 17.61 0.00 45.01 3.69
3682 4008 6.183361 TGTCGAGAGAATAGGAGAGGAGTTAT 60.183 42.308 0.00 0.00 45.01 1.89
3683 4009 7.016366 TGTCGAGAGAATAGGAGAGGAGTTATA 59.984 40.741 0.00 0.00 45.01 0.98
3684 4010 7.332678 GTCGAGAGAATAGGAGAGGAGTTATAC 59.667 44.444 0.00 0.00 45.01 1.47
3685 4011 7.016366 TCGAGAGAATAGGAGAGGAGTTATACA 59.984 40.741 0.00 0.00 37.03 2.29
3686 4012 7.827236 CGAGAGAATAGGAGAGGAGTTATACAT 59.173 40.741 0.00 0.00 0.00 2.29
3687 4013 9.528489 GAGAGAATAGGAGAGGAGTTATACATT 57.472 37.037 0.00 0.00 0.00 2.71
3688 4014 9.308000 AGAGAATAGGAGAGGAGTTATACATTG 57.692 37.037 0.00 0.00 0.00 2.82
3689 4015 7.902087 AGAATAGGAGAGGAGTTATACATTGC 58.098 38.462 0.00 0.00 0.00 3.56
3690 4016 7.510685 AGAATAGGAGAGGAGTTATACATTGCA 59.489 37.037 0.00 0.00 0.00 4.08
3691 4017 5.957771 AGGAGAGGAGTTATACATTGCAA 57.042 39.130 0.00 0.00 0.00 4.08
3692 4018 6.313519 AGGAGAGGAGTTATACATTGCAAA 57.686 37.500 1.71 0.00 0.00 3.68
3693 4019 6.904626 AGGAGAGGAGTTATACATTGCAAAT 58.095 36.000 1.71 0.00 0.00 2.32
3694 4020 6.769822 AGGAGAGGAGTTATACATTGCAAATG 59.230 38.462 1.71 5.27 0.00 2.32
3716 4042 4.141041 TGGATTCCAAGAACCAAGAGGAAA 60.141 41.667 1.94 0.00 41.27 3.13
3717 4043 4.218635 GGATTCCAAGAACCAAGAGGAAAC 59.781 45.833 0.00 0.00 41.27 2.78
3718 4044 3.223674 TCCAAGAACCAAGAGGAAACC 57.776 47.619 0.00 0.00 38.69 3.27
3729 4055 0.179018 GAGGAAACCTGCACACCTGT 60.179 55.000 0.00 0.00 31.76 4.00
3730 4056 2.416850 GAGGAAACCTGCACACCTGTG 61.417 57.143 0.73 0.73 40.77 3.66
3745 4073 4.263639 ACACCTGTGACATTGGAGATCATT 60.264 41.667 3.94 0.00 0.00 2.57
3751 4079 6.710278 TGTGACATTGGAGATCATTCAGTTA 58.290 36.000 0.00 0.00 0.00 2.24
3754 4082 6.825213 TGACATTGGAGATCATTCAGTTAAGG 59.175 38.462 0.00 0.00 0.00 2.69
3762 4090 7.926555 GGAGATCATTCAGTTAAGGAACGATTA 59.073 37.037 0.00 0.00 40.76 1.75
3763 4091 8.649973 AGATCATTCAGTTAAGGAACGATTAC 57.350 34.615 0.00 0.00 40.76 1.89
3765 4093 7.827819 TCATTCAGTTAAGGAACGATTACTG 57.172 36.000 0.00 0.00 40.76 2.74
3776 4104 1.569548 ACGATTACTGAGGGAGGAGGA 59.430 52.381 0.00 0.00 0.00 3.71
3777 4105 2.235016 CGATTACTGAGGGAGGAGGAG 58.765 57.143 0.00 0.00 0.00 3.69
3778 4106 2.423660 CGATTACTGAGGGAGGAGGAGT 60.424 54.545 0.00 0.00 0.00 3.85
3779 4107 2.830651 TTACTGAGGGAGGAGGAGTC 57.169 55.000 0.00 0.00 0.00 3.36
3781 4109 1.149782 ACTGAGGGAGGAGGAGTCCA 61.150 60.000 12.86 0.00 46.80 4.02
3782 4110 0.264359 CTGAGGGAGGAGGAGTCCAT 59.736 60.000 12.86 0.00 46.80 3.41
3905 4239 7.692460 ATGAATGCGGACATGATTGTAATAT 57.308 32.000 0.00 0.00 36.36 1.28
3936 4270 2.195727 TCATGAGCACATTGGTCCCTA 58.804 47.619 0.00 0.00 43.72 3.53
3989 4324 9.368416 AGATTTTGCCAGACTATATAGTACAGA 57.632 33.333 15.42 4.96 36.50 3.41
4017 4352 1.533187 TGGCCATCTCCCACCAATAT 58.467 50.000 0.00 0.00 0.00 1.28
4026 4361 4.385825 TCTCCCACCAATATGCGAAATAC 58.614 43.478 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.943002 CGGTTTGAAATATCAACCTAGTTAAGT 58.057 33.333 0.00 0.00 45.01 2.24
4 5 9.158233 TCGGTTTGAAATATCAACCTAGTTAAG 57.842 33.333 0.00 0.00 45.01 1.85
5 6 9.504708 TTCGGTTTGAAATATCAACCTAGTTAA 57.495 29.630 0.00 0.00 45.01 2.01
6 7 9.675464 ATTCGGTTTGAAATATCAACCTAGTTA 57.325 29.630 0.00 0.00 45.01 2.24
7 8 7.989416 TTCGGTTTGAAATATCAACCTAGTT 57.011 32.000 0.00 0.00 45.01 2.24
8 9 9.675464 TTATTCGGTTTGAAATATCAACCTAGT 57.325 29.630 0.00 0.00 45.01 2.57
19 20 8.813282 GTTGTCACTTTTTATTCGGTTTGAAAT 58.187 29.630 0.00 0.00 40.71 2.17
20 21 8.030106 AGTTGTCACTTTTTATTCGGTTTGAAA 58.970 29.630 0.00 0.00 40.71 2.69
21 22 7.540299 AGTTGTCACTTTTTATTCGGTTTGAA 58.460 30.769 0.00 0.00 41.81 2.69
22 23 7.090953 AGTTGTCACTTTTTATTCGGTTTGA 57.909 32.000 0.00 0.00 0.00 2.69
23 24 7.749539 AAGTTGTCACTTTTTATTCGGTTTG 57.250 32.000 0.00 0.00 40.66 2.93
69 76 2.887152 CCTCCTTTTCTTCTGTTGTGGG 59.113 50.000 0.00 0.00 0.00 4.61
78 85 5.505819 GCACTGTTAACACCTCCTTTTCTTC 60.506 44.000 3.59 0.00 0.00 2.87
83 90 3.290948 TGCACTGTTAACACCTCCTTT 57.709 42.857 3.59 0.00 0.00 3.11
87 94 4.154195 CCACTAATGCACTGTTAACACCTC 59.846 45.833 3.59 0.00 0.00 3.85
88 95 4.072131 CCACTAATGCACTGTTAACACCT 58.928 43.478 3.59 0.00 0.00 4.00
89 96 3.365969 GCCACTAATGCACTGTTAACACC 60.366 47.826 3.59 0.00 0.00 4.16
90 97 3.502211 AGCCACTAATGCACTGTTAACAC 59.498 43.478 3.59 0.00 0.00 3.32
91 98 3.750371 AGCCACTAATGCACTGTTAACA 58.250 40.909 8.28 8.28 0.00 2.41
92 99 5.873179 TTAGCCACTAATGCACTGTTAAC 57.127 39.130 0.00 0.00 0.00 2.01
94 101 6.176896 TCAATTAGCCACTAATGCACTGTTA 58.823 36.000 0.00 0.00 36.85 2.41
96 103 4.588899 TCAATTAGCCACTAATGCACTGT 58.411 39.130 0.00 0.00 36.85 3.55
97 104 5.335127 GTTCAATTAGCCACTAATGCACTG 58.665 41.667 0.00 0.00 36.85 3.66
99 106 4.342772 CGTTCAATTAGCCACTAATGCAC 58.657 43.478 0.00 0.00 36.85 4.57
107 119 2.007608 GAGACCCGTTCAATTAGCCAC 58.992 52.381 0.00 0.00 0.00 5.01
117 129 1.076332 CGAATTGGTGAGACCCGTTC 58.924 55.000 0.00 0.00 37.50 3.95
135 148 0.385473 CGCTGCTACAAACCAAACCG 60.385 55.000 0.00 0.00 0.00 4.44
141 154 0.676782 ATGGTCCGCTGCTACAAACC 60.677 55.000 0.00 0.00 0.00 3.27
142 155 0.727398 GATGGTCCGCTGCTACAAAC 59.273 55.000 0.00 0.00 0.00 2.93
143 156 0.323302 TGATGGTCCGCTGCTACAAA 59.677 50.000 0.00 0.00 0.00 2.83
144 157 0.323302 TTGATGGTCCGCTGCTACAA 59.677 50.000 0.00 0.00 0.00 2.41
145 158 0.108186 CTTGATGGTCCGCTGCTACA 60.108 55.000 0.00 0.00 0.00 2.74
146 159 0.811616 CCTTGATGGTCCGCTGCTAC 60.812 60.000 0.00 0.00 0.00 3.58
147 160 1.522092 CCTTGATGGTCCGCTGCTA 59.478 57.895 0.00 0.00 0.00 3.49
148 161 2.270205 CCTTGATGGTCCGCTGCT 59.730 61.111 0.00 0.00 0.00 4.24
169 295 2.575893 TTGCAGGCCCAGCATGTTG 61.576 57.895 19.88 1.98 42.60 3.33
177 303 0.469705 AAGAACATGTTGCAGGCCCA 60.470 50.000 17.58 0.00 0.00 5.36
259 385 3.490419 GCTACACTAATGACCCTACGTGG 60.490 52.174 0.00 0.00 0.00 4.94
261 387 3.129988 GTGCTACACTAATGACCCTACGT 59.870 47.826 0.00 0.00 0.00 3.57
263 389 4.441634 CCAGTGCTACACTAATGACCCTAC 60.442 50.000 0.00 0.00 43.43 3.18
264 390 3.704566 CCAGTGCTACACTAATGACCCTA 59.295 47.826 0.00 0.00 43.43 3.53
265 391 2.501723 CCAGTGCTACACTAATGACCCT 59.498 50.000 0.00 0.00 43.43 4.34
266 392 2.500098 TCCAGTGCTACACTAATGACCC 59.500 50.000 0.00 0.00 43.43 4.46
267 393 3.522553 GTCCAGTGCTACACTAATGACC 58.477 50.000 0.00 0.00 43.43 4.02
268 394 3.522553 GGTCCAGTGCTACACTAATGAC 58.477 50.000 0.00 7.57 43.43 3.06
269 395 2.165641 CGGTCCAGTGCTACACTAATGA 59.834 50.000 0.00 0.00 43.43 2.57
270 396 2.094182 ACGGTCCAGTGCTACACTAATG 60.094 50.000 0.00 0.00 43.43 1.90
271 397 2.176889 ACGGTCCAGTGCTACACTAAT 58.823 47.619 0.00 0.00 43.43 1.73
275 401 0.886563 ACTACGGTCCAGTGCTACAC 59.113 55.000 0.00 0.00 34.10 2.90
277 403 3.715854 CACTACGGTCCAGTGCTAC 57.284 57.895 0.00 0.00 37.22 3.58
282 408 3.001406 GGGGCACTACGGTCCAGT 61.001 66.667 0.00 0.00 0.00 4.00
292 418 2.101640 AAATTTTGTGAGGGGGCACT 57.898 45.000 0.00 0.00 39.49 4.40
294 420 4.163427 TGATAAAATTTTGTGAGGGGGCA 58.837 39.130 13.76 0.00 0.00 5.36
319 445 3.462205 GGGGGAGAACTATGGGTTTGTAT 59.538 47.826 0.00 0.00 38.41 2.29
325 451 0.421904 AGTGGGGGAGAACTATGGGT 59.578 55.000 0.00 0.00 0.00 4.51
328 454 0.181350 GGCAGTGGGGGAGAACTATG 59.819 60.000 0.00 0.00 0.00 2.23
330 456 0.474854 TTGGCAGTGGGGGAGAACTA 60.475 55.000 0.00 0.00 0.00 2.24
331 457 1.142688 ATTGGCAGTGGGGGAGAACT 61.143 55.000 0.00 0.00 0.00 3.01
332 458 0.251787 AATTGGCAGTGGGGGAGAAC 60.252 55.000 0.00 0.00 0.00 3.01
335 461 1.380380 GGAATTGGCAGTGGGGGAG 60.380 63.158 0.00 0.00 0.00 4.30
336 462 1.734420 TTGGAATTGGCAGTGGGGGA 61.734 55.000 0.00 0.00 0.00 4.81
337 463 0.835543 TTTGGAATTGGCAGTGGGGG 60.836 55.000 0.00 0.00 0.00 5.40
349 475 3.200605 GGATGGGCTTTGGATTTTGGAAT 59.799 43.478 0.00 0.00 0.00 3.01
357 483 0.325577 GTTGGGGATGGGCTTTGGAT 60.326 55.000 0.00 0.00 0.00 3.41
374 500 4.035102 GAAGAGGCTGGCCGGGTT 62.035 66.667 15.02 1.29 41.95 4.11
377 503 3.393970 TCTGAAGAGGCTGGCCGG 61.394 66.667 7.41 7.41 41.95 6.13
390 516 0.324183 CTCTCCAGGAGGCTGTCTGA 60.324 60.000 17.10 0.00 38.35 3.27
443 569 0.179137 CGCACGCTCTTGTCAGGATA 60.179 55.000 0.00 0.00 0.00 2.59
449 575 4.415501 CGCACGCACGCTCTTGTC 62.416 66.667 0.00 0.00 0.00 3.18
462 588 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
465 591 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
468 594 1.128507 CTCACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
469 595 1.001406 TCTCACACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
470 596 1.660607 CTCTCACACACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
471 597 1.548269 TCTCTCACACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
472 598 2.159240 TCTCTCTCACACACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
473 599 2.099405 TCTCTCTCACACACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
474 600 2.359214 TCTCTCTCTCACACACACACAC 59.641 50.000 0.00 0.00 0.00 3.82
475 601 2.620585 CTCTCTCTCTCACACACACACA 59.379 50.000 0.00 0.00 0.00 3.72
476 602 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
477 603 3.145286 CTCTCTCTCTCTCACACACACA 58.855 50.000 0.00 0.00 0.00 3.72
478 604 3.407698 TCTCTCTCTCTCTCACACACAC 58.592 50.000 0.00 0.00 0.00 3.82
479 605 3.326297 TCTCTCTCTCTCTCTCACACACA 59.674 47.826 0.00 0.00 0.00 3.72
480 606 3.935203 CTCTCTCTCTCTCTCTCACACAC 59.065 52.174 0.00 0.00 0.00 3.82
481 607 3.837731 TCTCTCTCTCTCTCTCTCACACA 59.162 47.826 0.00 0.00 0.00 3.72
482 608 4.160439 TCTCTCTCTCTCTCTCTCTCACAC 59.840 50.000 0.00 0.00 0.00 3.82
483 609 4.352893 TCTCTCTCTCTCTCTCTCTCACA 58.647 47.826 0.00 0.00 0.00 3.58
484 610 4.646945 TCTCTCTCTCTCTCTCTCTCTCAC 59.353 50.000 0.00 0.00 0.00 3.51
485 611 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
486 612 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
487 613 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
488 614 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
489 615 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
490 616 6.418057 AATCTCTCTCTCTCTCTCTCTCTC 57.582 45.833 0.00 0.00 0.00 3.20
491 617 6.821616 AAATCTCTCTCTCTCTCTCTCTCT 57.178 41.667 0.00 0.00 0.00 3.10
492 618 7.872113 AAAAATCTCTCTCTCTCTCTCTCTC 57.128 40.000 0.00 0.00 0.00 3.20
540 666 1.277557 GCCTCCTCATTGTCTCACACT 59.722 52.381 0.00 0.00 0.00 3.55
557 683 1.181098 ACGGTTACTACACACGGCCT 61.181 55.000 0.00 0.00 0.00 5.19
558 684 1.010419 CACGGTTACTACACACGGCC 61.010 60.000 0.00 0.00 0.00 6.13
560 686 0.318869 TGCACGGTTACTACACACGG 60.319 55.000 0.00 0.00 0.00 4.94
645 775 4.168291 CCTCCTCCTTCGCCCTGC 62.168 72.222 0.00 0.00 0.00 4.85
651 781 1.686052 CTCTTCCATCCTCCTCCTTCG 59.314 57.143 0.00 0.00 0.00 3.79
667 797 1.385206 GAGGGGAGGGCCATCTCTT 60.385 63.158 18.40 10.12 34.88 2.85
668 798 2.288643 GAGGGGAGGGCCATCTCT 59.711 66.667 18.40 14.84 34.88 3.10
669 799 2.040464 TGAGGGGAGGGCCATCTC 60.040 66.667 18.35 14.23 36.87 2.75
670 800 2.367512 GTGAGGGGAGGGCCATCT 60.368 66.667 18.35 0.00 35.15 2.90
671 801 3.866582 CGTGAGGGGAGGGCCATC 61.867 72.222 9.46 9.46 35.15 3.51
683 813 2.124983 CATGGGTGAGGCCGTGAG 60.125 66.667 0.00 0.00 38.44 3.51
684 814 2.927856 ACATGGGTGAGGCCGTGA 60.928 61.111 0.00 0.00 38.44 4.35
709 839 5.988561 CCCACTCTTCTTATAATCTCACTGC 59.011 44.000 0.00 0.00 0.00 4.40
735 865 2.042843 TCCTTCCTCCCGCTCTCC 60.043 66.667 0.00 0.00 0.00 3.71
737 867 2.042435 CCTCCTTCCTCCCGCTCT 60.042 66.667 0.00 0.00 0.00 4.09
738 868 1.681486 CTTCCTCCTTCCTCCCGCTC 61.681 65.000 0.00 0.00 0.00 5.03
741 871 1.001760 TCCTTCCTCCTTCCTCCCG 59.998 63.158 0.00 0.00 0.00 5.14
742 872 0.043485 ACTCCTTCCTCCTTCCTCCC 59.957 60.000 0.00 0.00 0.00 4.30
744 874 3.391799 ACTACTCCTTCCTCCTTCCTC 57.608 52.381 0.00 0.00 0.00 3.71
745 875 4.120681 TCTACTACTCCTTCCTCCTTCCT 58.879 47.826 0.00 0.00 0.00 3.36
746 876 4.523168 TCTACTACTCCTTCCTCCTTCC 57.477 50.000 0.00 0.00 0.00 3.46
747 877 5.512298 ACTTCTACTACTCCTTCCTCCTTC 58.488 45.833 0.00 0.00 0.00 3.46
748 878 5.539669 ACTTCTACTACTCCTTCCTCCTT 57.460 43.478 0.00 0.00 0.00 3.36
749 879 5.539669 AACTTCTACTACTCCTTCCTCCT 57.460 43.478 0.00 0.00 0.00 3.69
750 880 6.661777 TCTAACTTCTACTACTCCTTCCTCC 58.338 44.000 0.00 0.00 0.00 4.30
751 881 7.067372 GGTTCTAACTTCTACTACTCCTTCCTC 59.933 44.444 0.00 0.00 0.00 3.71
752 882 6.891361 GGTTCTAACTTCTACTACTCCTTCCT 59.109 42.308 0.00 0.00 0.00 3.36
859 1008 0.035056 GAGTGGGGAAGTGATGGTGG 60.035 60.000 0.00 0.00 0.00 4.61
902 1051 2.113139 GTGTGTGGGTGTGGGAGG 59.887 66.667 0.00 0.00 0.00 4.30
904 1053 2.301738 TGTGTGTGTGGGTGTGGGA 61.302 57.895 0.00 0.00 0.00 4.37
906 1055 1.377856 TGTGTGTGTGTGGGTGTGG 60.378 57.895 0.00 0.00 0.00 4.17
910 1059 0.958382 GTGTGTGTGTGTGTGTGGGT 60.958 55.000 0.00 0.00 0.00 4.51
914 1063 1.358725 GAGCGTGTGTGTGTGTGTGT 61.359 55.000 0.00 0.00 0.00 3.72
915 1064 1.083806 AGAGCGTGTGTGTGTGTGTG 61.084 55.000 0.00 0.00 0.00 3.82
916 1065 0.806102 GAGAGCGTGTGTGTGTGTGT 60.806 55.000 0.00 0.00 0.00 3.72
917 1066 0.528466 AGAGAGCGTGTGTGTGTGTG 60.528 55.000 0.00 0.00 0.00 3.82
918 1067 0.175760 AAGAGAGCGTGTGTGTGTGT 59.824 50.000 0.00 0.00 0.00 3.72
943 1092 0.692419 GGAGAATGGAGGCAGAGGGA 60.692 60.000 0.00 0.00 0.00 4.20
944 1093 1.704007 GGGAGAATGGAGGCAGAGGG 61.704 65.000 0.00 0.00 0.00 4.30
947 1099 2.090550 TCTATGGGAGAATGGAGGCAGA 60.091 50.000 0.00 0.00 0.00 4.26
950 1102 3.749226 CTTTCTATGGGAGAATGGAGGC 58.251 50.000 0.00 0.00 43.84 4.70
1008 1171 1.280421 ACCAGCTTGAAGTCCTCATCC 59.720 52.381 0.00 0.00 32.78 3.51
1046 1209 1.698532 CAAGAGGGATGGATGGAGAGG 59.301 57.143 0.00 0.00 0.00 3.69
1065 1230 3.330701 AGAAATAAACAGAGGGAGTGCCA 59.669 43.478 2.50 0.00 35.15 4.92
1066 1231 3.956744 AGAAATAAACAGAGGGAGTGCC 58.043 45.455 0.00 0.00 0.00 5.01
1067 1232 5.707764 AGAAAGAAATAAACAGAGGGAGTGC 59.292 40.000 0.00 0.00 0.00 4.40
1068 1233 7.751768 AAGAAAGAAATAAACAGAGGGAGTG 57.248 36.000 0.00 0.00 0.00 3.51
1069 1234 8.768501 AAAAGAAAGAAATAAACAGAGGGAGT 57.231 30.769 0.00 0.00 0.00 3.85
1071 1236 8.996651 AGAAAAGAAAGAAATAAACAGAGGGA 57.003 30.769 0.00 0.00 0.00 4.20
1082 1247 9.054922 CACAAGAGAGAGAGAAAAGAAAGAAAT 57.945 33.333 0.00 0.00 0.00 2.17
1084 1249 7.786030 TCACAAGAGAGAGAGAAAAGAAAGAA 58.214 34.615 0.00 0.00 0.00 2.52
1086 1251 6.646240 CCTCACAAGAGAGAGAGAAAAGAAAG 59.354 42.308 0.00 0.00 44.98 2.62
1088 1253 5.835819 TCCTCACAAGAGAGAGAGAAAAGAA 59.164 40.000 0.00 0.00 44.98 2.52
1090 1255 5.713025 CTCCTCACAAGAGAGAGAGAAAAG 58.287 45.833 0.00 0.00 44.98 2.27
1092 1257 3.509575 GCTCCTCACAAGAGAGAGAGAAA 59.490 47.826 13.09 0.00 44.98 2.52
1093 1258 3.088532 GCTCCTCACAAGAGAGAGAGAA 58.911 50.000 13.09 0.00 44.98 2.87
1094 1259 2.308570 AGCTCCTCACAAGAGAGAGAGA 59.691 50.000 13.09 0.00 44.98 3.10
1095 1260 2.684881 GAGCTCCTCACAAGAGAGAGAG 59.315 54.545 0.87 0.00 44.98 3.20
1096 1261 2.308570 AGAGCTCCTCACAAGAGAGAGA 59.691 50.000 10.93 0.00 44.98 3.10
1097 1262 2.424601 CAGAGCTCCTCACAAGAGAGAG 59.575 54.545 10.93 0.00 44.98 3.20
1099 1264 1.135024 GCAGAGCTCCTCACAAGAGAG 60.135 57.143 10.93 0.00 44.98 3.20
1100 1265 0.894141 GCAGAGCTCCTCACAAGAGA 59.106 55.000 10.93 0.00 44.98 3.10
1101 1266 0.896923 AGCAGAGCTCCTCACAAGAG 59.103 55.000 10.93 0.00 41.72 2.85
1102 1267 3.063915 AGCAGAGCTCCTCACAAGA 57.936 52.632 10.93 0.00 30.62 3.02
1117 1300 2.423185 CACACCAAGAACAGTTTGAGCA 59.577 45.455 0.00 0.00 0.00 4.26
1118 1301 2.223572 CCACACCAAGAACAGTTTGAGC 60.224 50.000 0.00 0.00 0.00 4.26
1120 1303 2.752354 CACCACACCAAGAACAGTTTGA 59.248 45.455 0.00 0.00 0.00 2.69
1121 1304 2.159254 CCACCACACCAAGAACAGTTTG 60.159 50.000 0.00 0.00 0.00 2.93
1122 1305 2.099405 CCACCACACCAAGAACAGTTT 58.901 47.619 0.00 0.00 0.00 2.66
1137 1320 1.228831 CCAATCCCAAGCACCACCA 60.229 57.895 0.00 0.00 0.00 4.17
1138 1321 1.984026 CCCAATCCCAAGCACCACC 60.984 63.158 0.00 0.00 0.00 4.61
1139 1322 0.967380 CTCCCAATCCCAAGCACCAC 60.967 60.000 0.00 0.00 0.00 4.16
1140 1323 1.383799 CTCCCAATCCCAAGCACCA 59.616 57.895 0.00 0.00 0.00 4.17
1141 1324 1.380380 CCTCCCAATCCCAAGCACC 60.380 63.158 0.00 0.00 0.00 5.01
1142 1325 1.380380 CCCTCCCAATCCCAAGCAC 60.380 63.158 0.00 0.00 0.00 4.40
1143 1326 1.543642 TCCCTCCCAATCCCAAGCA 60.544 57.895 0.00 0.00 0.00 3.91
1144 1327 1.228510 CTCCCTCCCAATCCCAAGC 59.771 63.158 0.00 0.00 0.00 4.01
1145 1328 1.228510 GCTCCCTCCCAATCCCAAG 59.771 63.158 0.00 0.00 0.00 3.61
1146 1329 1.230281 AGCTCCCTCCCAATCCCAA 60.230 57.895 0.00 0.00 0.00 4.12
1147 1330 1.694169 GAGCTCCCTCCCAATCCCA 60.694 63.158 0.87 0.00 31.68 4.37
1148 1331 1.064824 ATGAGCTCCCTCCCAATCCC 61.065 60.000 12.15 0.00 37.29 3.85
1149 1332 0.110104 CATGAGCTCCCTCCCAATCC 59.890 60.000 12.15 0.00 37.29 3.01
1150 1333 1.135094 TCATGAGCTCCCTCCCAATC 58.865 55.000 12.15 0.00 37.29 2.67
1151 1334 1.213926 GTTCATGAGCTCCCTCCCAAT 59.786 52.381 12.15 0.00 37.29 3.16
1152 1335 0.620556 GTTCATGAGCTCCCTCCCAA 59.379 55.000 12.15 0.00 37.29 4.12
1153 1336 0.252881 AGTTCATGAGCTCCCTCCCA 60.253 55.000 12.15 0.00 37.29 4.37
1168 1351 3.490933 GCCCCAAGAAACAAGAACAGTTC 60.491 47.826 5.00 5.00 0.00 3.01
1192 1375 2.567497 GCAGGAGGCAAGCAAGCAA 61.567 57.895 2.78 0.00 43.97 3.91
1280 1472 1.402456 GCGTGTGTGTACCTTCGATCT 60.402 52.381 0.00 0.00 0.00 2.75
1308 1506 1.017387 GATTGGAAGGCGATGGACAC 58.983 55.000 0.00 0.00 0.00 3.67
1340 1546 0.663153 AGCCAACAGAAAGAACACGC 59.337 50.000 0.00 0.00 0.00 5.34
1342 1548 2.576615 AGGAGCCAACAGAAAGAACAC 58.423 47.619 0.00 0.00 0.00 3.32
1346 1552 2.057922 AGGAAGGAGCCAACAGAAAGA 58.942 47.619 0.00 0.00 0.00 2.52
1358 1564 3.588336 GCAGCAGCAAGGAAGGAG 58.412 61.111 0.00 0.00 41.58 3.69
1369 1575 3.350909 AATGGCGCATGTGCAGCAG 62.351 57.895 30.73 0.00 42.21 4.24
1370 1576 3.345209 GAATGGCGCATGTGCAGCA 62.345 57.895 30.73 21.01 42.21 4.41
1371 1577 1.717791 TAGAATGGCGCATGTGCAGC 61.718 55.000 30.73 16.09 42.21 5.25
1372 1578 0.306840 CTAGAATGGCGCATGTGCAG 59.693 55.000 30.73 15.57 42.21 4.41
1420 1626 4.217550 GGGAGCTATAACAACAACAGCAAA 59.782 41.667 0.00 0.00 34.65 3.68
1440 1651 3.555168 GCGTCAAAGAGAAGAAAGAGGGA 60.555 47.826 0.00 0.00 0.00 4.20
1444 1655 2.794910 CGTGCGTCAAAGAGAAGAAAGA 59.205 45.455 0.00 0.00 0.00 2.52
1449 1660 0.861837 AAGCGTGCGTCAAAGAGAAG 59.138 50.000 0.00 0.00 0.00 2.85
1452 1663 0.993746 GCAAAGCGTGCGTCAAAGAG 60.994 55.000 0.00 0.00 45.10 2.85
1453 1664 1.010125 GCAAAGCGTGCGTCAAAGA 60.010 52.632 0.00 0.00 45.10 2.52
1454 1665 3.514546 GCAAAGCGTGCGTCAAAG 58.485 55.556 0.00 0.00 45.10 2.77
1503 1734 2.341176 CAAGTGGGCAGGCAAAGC 59.659 61.111 0.00 0.00 0.00 3.51
1505 1736 2.443577 TGCAAGTGGGCAGGCAAA 60.444 55.556 0.00 0.00 39.25 3.68
1528 1759 2.931921 GTGGGGGTGGTTTCAGGT 59.068 61.111 0.00 0.00 0.00 4.00
1529 1760 2.282180 CGTGGGGGTGGTTTCAGG 60.282 66.667 0.00 0.00 0.00 3.86
1536 1767 2.347490 CAAGACTCGTGGGGGTGG 59.653 66.667 0.00 0.00 0.00 4.61
1607 1838 7.223971 TCGATTCGGTCTGAACATTTAATTAGG 59.776 37.037 6.18 0.00 40.00 2.69
1660 1895 7.044181 TCAATTAGCTCAGGATTTACTCACAG 58.956 38.462 0.00 0.00 0.00 3.66
1691 1930 6.015918 TGGGTGAGTTTTGGACATATTCATT 58.984 36.000 0.00 0.00 0.00 2.57
1692 1931 5.579047 TGGGTGAGTTTTGGACATATTCAT 58.421 37.500 0.00 0.00 0.00 2.57
1699 1938 4.735369 ACATAATGGGTGAGTTTTGGACA 58.265 39.130 0.00 0.00 0.00 4.02
1744 1987 1.428448 CAGCCGTTTGTGAGATTCGA 58.572 50.000 0.00 0.00 0.00 3.71
1764 2007 4.002906 TCCTGTGTGTGTCATTTCCTAC 57.997 45.455 0.00 0.00 0.00 3.18
1828 2080 2.490903 AGCATCACAAGATTTGCAGGTC 59.509 45.455 0.00 0.00 30.20 3.85
1833 2085 6.327934 ACTAATGAAGCATCACAAGATTTGC 58.672 36.000 8.81 0.00 38.69 3.68
1836 2088 9.399797 TCATTACTAATGAAGCATCACAAGATT 57.600 29.630 8.76 0.00 44.47 2.40
1910 2170 2.022718 ACAGAAAGCAGAGAGGGAGT 57.977 50.000 0.00 0.00 0.00 3.85
1988 2251 2.982744 CTCAGAGTCGACGCTGCCA 61.983 63.158 35.56 22.81 42.40 4.92
2057 2320 4.335647 CTGCCGCCCTTCTGGTGT 62.336 66.667 0.00 0.00 43.57 4.16
2074 2337 2.027460 CCTGGTTGTTGTTGCCGC 59.973 61.111 0.00 0.00 0.00 6.53
2103 2372 3.006247 GGTTGTTGTTGTTGTTGCCATT 58.994 40.909 0.00 0.00 0.00 3.16
2104 2373 2.027745 TGGTTGTTGTTGTTGTTGCCAT 60.028 40.909 0.00 0.00 0.00 4.40
2105 2374 1.344438 TGGTTGTTGTTGTTGTTGCCA 59.656 42.857 0.00 0.00 0.00 4.92
2109 2378 2.560542 TCTGCTGGTTGTTGTTGTTGTT 59.439 40.909 0.00 0.00 0.00 2.83
2110 2379 2.166829 TCTGCTGGTTGTTGTTGTTGT 58.833 42.857 0.00 0.00 0.00 3.32
2112 2381 2.417243 GCTTCTGCTGGTTGTTGTTGTT 60.417 45.455 0.00 0.00 36.03 2.83
2113 2382 1.134946 GCTTCTGCTGGTTGTTGTTGT 59.865 47.619 0.00 0.00 36.03 3.32
2115 2384 1.406539 CTGCTTCTGCTGGTTGTTGTT 59.593 47.619 0.00 0.00 40.48 2.83
2116 2385 1.027357 CTGCTTCTGCTGGTTGTTGT 58.973 50.000 0.00 0.00 40.48 3.32
2117 2386 0.318445 GCTGCTTCTGCTGGTTGTTG 60.318 55.000 0.00 0.00 40.48 3.33
2118 2387 0.752743 TGCTGCTTCTGCTGGTTGTT 60.753 50.000 0.00 0.00 40.48 2.83
2119 2388 1.152902 TGCTGCTTCTGCTGGTTGT 60.153 52.632 0.00 0.00 40.48 3.32
2160 2435 1.248785 ACATTGGCAGCCTGCTTCTG 61.249 55.000 17.55 13.06 44.28 3.02
2161 2436 1.076192 ACATTGGCAGCCTGCTTCT 59.924 52.632 17.55 0.00 44.28 2.85
2162 2437 1.214589 CACATTGGCAGCCTGCTTC 59.785 57.895 17.55 0.80 44.28 3.86
2264 2542 1.311651 GGCTCTTGAAGGCCTTGAGC 61.312 60.000 33.17 33.17 46.43 4.26
2309 2587 3.514417 TCGTCATCCGAGCTCAGG 58.486 61.111 15.40 15.61 41.60 3.86
2321 2599 8.742777 TCATCATCATACATATCATCTTCGTCA 58.257 33.333 0.00 0.00 0.00 4.35
2327 2608 7.559170 TCGTCCTCATCATCATACATATCATCT 59.441 37.037 0.00 0.00 0.00 2.90
2351 2632 2.460243 ACTCATCATCGTCTTCGTCG 57.540 50.000 0.00 0.00 38.33 5.12
2354 2635 3.001660 CGTCAAACTCATCATCGTCTTCG 60.002 47.826 0.00 0.00 38.55 3.79
2357 2638 3.850122 TCGTCAAACTCATCATCGTCT 57.150 42.857 0.00 0.00 0.00 4.18
2525 2806 0.251341 GATGGTGGTTGTTCCCTGCT 60.251 55.000 0.00 0.00 34.77 4.24
2585 2866 0.925720 TCCCCATCTTGGCATTCCCT 60.926 55.000 0.00 0.00 35.79 4.20
2909 3205 0.811616 CCGTGTAAGGGCTGATCTGC 60.812 60.000 15.69 15.69 33.71 4.26
2927 3223 2.484947 GCTGTATGGGTTGTAGTAGGCC 60.485 54.545 0.00 0.00 0.00 5.19
3130 3426 0.036765 TCACCATTCACCGCTACCAC 60.037 55.000 0.00 0.00 0.00 4.16
3137 3434 0.729116 GACTGCATCACCATTCACCG 59.271 55.000 0.00 0.00 0.00 4.94
3172 3469 6.095440 ACATAAAGGCAGCAAAATACTAGTGG 59.905 38.462 5.39 0.00 0.00 4.00
3250 3548 3.976942 CCTTCATTCAGTTTCAAACAGCG 59.023 43.478 2.41 0.00 0.00 5.18
3281 3579 4.069300 TGATCATCATCCTCTGAAGTGC 57.931 45.455 0.00 0.00 37.44 4.40
3286 3584 3.710165 ACAGCTTGATCATCATCCTCTGA 59.290 43.478 0.00 0.00 38.53 3.27
3287 3585 3.810386 CACAGCTTGATCATCATCCTCTG 59.190 47.826 0.00 0.00 0.00 3.35
3288 3586 3.455177 ACACAGCTTGATCATCATCCTCT 59.545 43.478 0.00 0.00 0.00 3.69
3289 3587 3.806380 ACACAGCTTGATCATCATCCTC 58.194 45.455 0.00 0.00 0.00 3.71
3290 3588 3.928005 ACACAGCTTGATCATCATCCT 57.072 42.857 0.00 0.00 0.00 3.24
3291 3589 4.510711 CACTACACAGCTTGATCATCATCC 59.489 45.833 0.00 0.00 0.00 3.51
3292 3590 5.114780 ACACTACACAGCTTGATCATCATC 58.885 41.667 0.00 0.00 0.00 2.92
3293 3591 5.095145 ACACTACACAGCTTGATCATCAT 57.905 39.130 0.00 0.00 0.00 2.45
3294 3592 4.541973 ACACTACACAGCTTGATCATCA 57.458 40.909 0.00 0.00 0.00 3.07
3295 3593 7.545362 AATTACACTACACAGCTTGATCATC 57.455 36.000 0.00 0.00 0.00 2.92
3296 3594 9.618890 ATTAATTACACTACACAGCTTGATCAT 57.381 29.630 0.00 0.00 0.00 2.45
3297 3595 9.448438 AATTAATTACACTACACAGCTTGATCA 57.552 29.630 0.00 0.00 0.00 2.92
3300 3598 9.158233 GGTAATTAATTACACTACACAGCTTGA 57.842 33.333 30.11 0.00 43.33 3.02
3301 3599 9.162764 AGGTAATTAATTACACTACACAGCTTG 57.837 33.333 30.11 0.00 43.33 4.01
3302 3600 9.734984 AAGGTAATTAATTACACTACACAGCTT 57.265 29.630 30.11 20.25 43.33 3.74
3303 3601 9.734984 AAAGGTAATTAATTACACTACACAGCT 57.265 29.630 30.11 16.78 43.33 4.24
3304 3602 9.769093 CAAAGGTAATTAATTACACTACACAGC 57.231 33.333 30.11 15.25 43.33 4.40
3315 3613 8.519526 CACAAGGCAGTCAAAGGTAATTAATTA 58.480 33.333 3.71 3.71 0.00 1.40
3464 3772 3.139584 TGGCATGATGATGATCCTCCTTT 59.860 43.478 0.00 0.00 0.00 3.11
3470 3778 3.418047 TCATGTGGCATGATGATGATCC 58.582 45.455 7.63 0.00 0.00 3.36
3484 3792 2.124983 CCGGCCTCACTCATGTGG 60.125 66.667 0.00 0.00 43.94 4.17
3676 4002 7.715657 TGGAATCCATTTGCAATGTATAACTC 58.284 34.615 0.00 0.00 32.09 3.01
3682 4008 6.397272 GTTCTTGGAATCCATTTGCAATGTA 58.603 36.000 1.39 0.00 43.59 2.29
3683 4009 5.240121 GTTCTTGGAATCCATTTGCAATGT 58.760 37.500 1.39 0.00 43.59 2.71
3684 4010 4.632688 GGTTCTTGGAATCCATTTGCAATG 59.367 41.667 1.39 0.75 43.59 2.82
3685 4011 4.286549 TGGTTCTTGGAATCCATTTGCAAT 59.713 37.500 1.39 0.00 43.59 3.56
3686 4012 3.645212 TGGTTCTTGGAATCCATTTGCAA 59.355 39.130 1.39 0.00 42.57 4.08
3687 4013 3.237746 TGGTTCTTGGAATCCATTTGCA 58.762 40.909 1.39 0.00 33.34 4.08
3688 4014 3.959535 TGGTTCTTGGAATCCATTTGC 57.040 42.857 1.39 0.00 31.53 3.68
3689 4015 5.337009 CCTCTTGGTTCTTGGAATCCATTTG 60.337 44.000 1.39 0.00 31.53 2.32
3690 4016 4.774200 CCTCTTGGTTCTTGGAATCCATTT 59.226 41.667 1.39 0.00 31.53 2.32
3691 4017 4.044571 TCCTCTTGGTTCTTGGAATCCATT 59.955 41.667 1.39 0.00 31.42 3.16
3692 4018 3.593328 TCCTCTTGGTTCTTGGAATCCAT 59.407 43.478 1.39 0.00 31.42 3.41
3693 4019 2.986019 TCCTCTTGGTTCTTGGAATCCA 59.014 45.455 0.00 0.00 34.23 3.41
3694 4020 3.721087 TCCTCTTGGTTCTTGGAATCC 57.279 47.619 0.00 0.00 34.23 3.01
3716 4042 0.183492 AATGTCACAGGTGTGCAGGT 59.817 50.000 5.17 0.00 45.25 4.00
3717 4043 0.594602 CAATGTCACAGGTGTGCAGG 59.405 55.000 5.17 1.35 45.25 4.85
3718 4044 0.594602 CCAATGTCACAGGTGTGCAG 59.405 55.000 5.17 0.00 45.25 4.41
3729 4055 6.825213 CCTTAACTGAATGATCTCCAATGTCA 59.175 38.462 0.00 0.00 0.00 3.58
3730 4056 7.050377 TCCTTAACTGAATGATCTCCAATGTC 58.950 38.462 0.00 0.00 0.00 3.06
3734 4060 5.874810 CGTTCCTTAACTGAATGATCTCCAA 59.125 40.000 0.00 0.00 33.15 3.53
3740 4068 8.258007 TCAGTAATCGTTCCTTAACTGAATGAT 58.742 33.333 10.08 10.08 45.70 2.45
3745 4073 5.105473 CCCTCAGTAATCGTTCCTTAACTGA 60.105 44.000 0.00 0.00 33.15 3.41
3751 4079 2.766828 CCTCCCTCAGTAATCGTTCCTT 59.233 50.000 0.00 0.00 0.00 3.36
3754 4082 2.362717 CCTCCTCCCTCAGTAATCGTTC 59.637 54.545 0.00 0.00 0.00 3.95
3762 4090 1.149782 TGGACTCCTCCTCCCTCAGT 61.150 60.000 0.00 0.00 37.48 3.41
3763 4091 0.264359 ATGGACTCCTCCTCCCTCAG 59.736 60.000 0.00 0.00 37.48 3.35
3765 4093 1.127343 CAATGGACTCCTCCTCCCTC 58.873 60.000 0.00 0.00 37.48 4.30
3776 4104 2.397044 TTTTGAAGCCCCAATGGACT 57.603 45.000 0.00 0.00 35.39 3.85
3905 4239 0.913934 TGCTCATGAAGGGGGCTACA 60.914 55.000 0.00 0.00 0.00 2.74
3936 4270 6.950041 TGAGGAGATCAGAATTCATTTTGGTT 59.050 34.615 8.44 0.00 32.77 3.67
3989 4324 2.785269 TGGGAGATGGCCATTATGAACT 59.215 45.455 21.84 11.17 0.00 3.01
4017 4352 4.565022 TGAACACTGATCTGTATTTCGCA 58.435 39.130 4.78 0.00 0.00 5.10
4026 4361 5.428496 TGCTTTTTCTGAACACTGATCTG 57.572 39.130 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.