>input_sequence_38302
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------------------------------------------ATGACCAAGGATGAGGACTTCAAGCTGGTCAAGATCCA
GGTACCTCC--CTCTCCATCCATCCCTCTTGGCACTCCCTCTGTTTATTTCTTTCTTTTCTCTCTCTC------------
------TTGTGAGGAGCTCTGCTCAAACTGTTCTTGGTGTGGTGGTGCTTGGGATTGGGAGGGAGCTCATGAACTGTTCT
TGTTTCTTGGGGCTTTGCTTGCTT-GCC--------TCCTGCAGACCCATGTCCTGAGGGTGAACATACACTGCGACGGC
TGCAAGCACAAGGTCAAGAAGCTGCTCCAGAAGATCGAAGGT------ACACACACGCCCAGCTAGTGTCCATCGCC---
-----TTCCAATCCAATCCAATCCTGCGTGTTCTTTCTGTTGGCTCCTTCCTTGCTGCTGCACATGCGCCATTCTAGCGG
TCTAAGCTGCTGGTGGTGCTACTTGTT-----TGCTGTTGTTGTTATAGCTCCCTCTTTCTTCTCTTTGACGCACGCTTT
GCTGTAACTGT--------------------TAATAAAGGCCTCAAGCTTTGGGCTTTGCCTGCCCACTTGCATCTGGAC
CTGAAACCACCCCCACGAGTCTTGCCAAATGCGCTTACACGACAAGAAATCCCTGCTTTTCATGTCGTCAGGGCCATCCT
AATTAAATGTTC--AGACCGAATCGATGTAG--TAAGTAAAGTAGTTATGGATGCTGTGAGTAAATCCTGAGCTAATTGA
TAGT----TAATGAATATGTCCAAAACTCACCCAT----TATGTAGTAGCTGAGGTGATTGTTGTGTCGAATCTCACAAA
CGGCTGGT-AGGAAATGACACACACAGGATGGATGGATG--------GATGGATGAACCCCACCCAGACTCACTGCACAG
ACCTGCAAAT-CTTGTGATGCTTCATTAGTAATGAGCAGTAGTACTTTGTAA-------TTTACCATGGCTCACGAGCAA
CCTGTGAACACTCCCTCTCTGCTTTCTGTTCA---TTGCAGGCGTCTACTCGGTGGCCATCGATGTGGACAACCACAAGG
TCACGGTGACTGGCAGCGTCGACTCTGAGACGCTCATCCGGAAGCTCACCAGAGGGGGCAAGCACGCAGAGCTGTGGTCA
CACCAGAAGGGCGGCAGCGG------CAACAACAACCAGGGCCACAAGGGCAATGGCAACAACAACAACAA------CCA
GCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGCTGCCAATGTGAGCAAGGATGGCGGCGGCAAGGGCA
GCGGCGGGCAGAAGGAGCAGGGCAAGCTTGGTGGCGG---AGTTGGGAGCCTCATGCAGGGGCTCAAGGCCTTCAAGAGC
CAGCACAGCAAGCACCAGCTCCCTGACCTGAGCTCGGAT---GACGAAGATGATATGTATGATGATGAGGACGACGAAGA
CGATGATGAGTTTGACGATGAGTATGAGGACGACCTCCGCTTCCTCGGGGACAAGATGAGCCAGCTCGGCATCCTCAGGC
AGCGCGCCGAGGCTGCGGCGGCGATCAACGCCAAGAACAAGAACGGCGGCAATGCCGCCAATGTCGGCGGCAAGAAAGGC
GCCCCAGCAGGGAACAACCACCATCAGAACAACCAGAACCAGAAGATGAACATGGGCGCGGCGGCAGGGAATGCCAAGAT
GGGGAATGGCGCTCAGAAGAACACTGGCGGCATCGGTGGCCTGATGGGCCTGAACCAT---GGCCTGGGAGCTGGCGGTG
CTGCTCCTGGCATACAGGGCTACACAGGCGGCG---GCTTCAGCCACCCTTCCTCCTACGGTGCCGCCGGCTACGGAGGG
CTCCAGCAGCAGCAGCAG---------AACGGCAACCTGATGGCGAGCATGCAGGGGTACCACAACAACCCGGCGGCGGC
CGCGGCGATGATGAACAACCTGAGGGGCAACATGATGATGCACCAGCCGCAGCCGCAGCCGCAGATGATGTACCACCGGT
CTCCGCAGATCAGCCCTTACACGGCCTACTACAACCCATACAGCTACTACTACCAGCAGCCCGGCGGCGGCGGCGGCGGC
GGCTCCTCCGCCTACCACCCCGGCGGCGGCACCGGCGACGTCGAGACCATGTTCAGCGACGAGAACACCAAGGGCTGTGC
CATCATGTAG----------------------------------------------------------------------
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---------
>chr3A_1_TraesCS3A01G048000
CCAACTTAACTAGGTTGATATTTCAAACCGAATAAAAAGTGACAACTTTATGGTACCATGAATCT------TCCACCCAC
AACAGAAGAAAAGGAGGTGTTAACAGTGC-----ATTAGTGGCTAATTGAACGGGTCTC-ACCAATTCGGTTTGGTTTGT
AGCAGCG-------------------------------------------------------------------------
----------------------------------------GACCATCAAGGTGGCAACATGCTGGGCCTGCAACATGTTC
TTCACCGGCCACTGGTCAGTCAGCTGCTACTATTGTACTCTATATACATGTGTACAACACGCACCCACGTAGGGTCATTA
GTGTAGCACTGGACCGTAGTGCCCCCTCACAAAATTTTATCATGATACAAACCCATAGTTCTCCCCCACTGCCAATTCCA
AAATCCAAAGCCCATCCCCAACCCGGCCAGCCTCTTCAGACAGCCTCCTGGAGAGACTACAAAAGAAGAGATATTTTTTT
CACCACACTATCCTGACAAGAGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGATTT
TTTCACCACACTGTCCTAACGAGAGAGTGTGAGACAATGAGGAGGCCGTGTGTAGTAACCGTGCATGTACCGTGCGGTAC
AAACCTTGCAATATAATTT----TTTTACCGGAGAGGTGGGGGCAGCAGGGCAGGCAGGGCGAAGGAGGAGGATGGAAGA
GATGGCCCTCCCCTCACGGCCTCACCCATGTGGGAGGGGCAGTGAGATTATAAGAAGAGTGGGGGGAGAGCGGGAGGAAG
GAGGAAGGAGT----AGTAGAAGTTAGAACCGAACGACACATTCTTAAATGCAGGGAAGGAGGGGTGGCTTCT-------
--------CCTCCTGCAACGGTACAAGAGCCAACGCCAGCGCCAGCACCACCATCACTTCCCCACTCCTCCACTAGCCAC
TGCCCCTCCCCCTCCCACACCCACACACACACACACACGCTCTCTTCCTCCTC---CCTCTGCCTCCATTCTCCCATAGA
AAGCTTGCGCAGCA-----------GTGGTGGCTCTGCAGAGATGACCAAGGATGAGGACTTCAAGCTGGTCAAGATCCA
GGTACCTCC--CTCTCCATCCATCCCTCTTGGCACTCCCTCTGTTTATTTCTTTCTTTTCTCTCTCTC------------
------TTGTGAGGAGCTCTGCTCAAACTGTTCTTGGTGTGGTGGTGCTTGGGATTGGGAGGGAGCTCATGAACTGTTCT
TGTTTCTTGGGGCTTTGCTTGCTT-GCC--------TCCTGCAGACCCATGTCCTGAGGGTGAACATACACTGCGACGGC
TGCAAGCACAAGGTCAAGAAGCTGCTCCAGAAGATCGAAGGT------ACACACACGCCCAGCTAGTGTCCATCGCC---
-----TTCCAATCCAATCCAATCCTGCGTGTTCTTTCTGTTGGCTCCTTCCTTGCTGCTGCACATGCGCCATTCTAGCGG
TCTAAGCTGCTGGTGGTGCTACTTGTT-----TGCTGTTGTTGTTATAGCTCCCTCTTTCTTCTCTTTGACGCACGCTTT
GCTGTAACTGT--------------------TAATAAAGGCCTCAAGCTTTGGGCTTTGCCTGCCCACTTGCATCTGGAC
CTGAAACCACCCCCACGAGTCTTGCCAAATGCGCTTACACGACAAGAAATCCCTGCTTTTCATGTCGTCAGGGCCATCCT
AATTAAATGTTC--AGACCGAATCGATGTAG--TAAGTAAAGTAGTTATGGATGCTGTGAGTAAATCCTGAGCTAATTGA
TAGT----TAATGAATATGTCCAAAACTCACCCAT----TATGTAGTAGCTGAGGTGATTGTTGTGTCGAATCTCACAAA
CGGCTGGT-AGGAAATGACACACACAGGATGGATGGATG--------GATGGATGAACCCCACCCAGACTCACTGCACAG
ACCTGCAAAT-CTTGTGATGCTTCATTAGTAATGAGCAGTAGTACTTTGTAA-------TTTACCATGGCTCACGAGCAA
CCTGTGAACACTCCCTCTCTGCTTTCTGTTCA---TTGCAGGCGTCTACTCGGTGGCCATCGATGTGGACAACCACAAGG
TCACGGTGACTGGCAGCGTCGACTCTGAGACGCTCATCCGGAAGCTCACCAGAGGGGGCAAGCACGCAGAGCTGTGGTCA
CACCAGAAGGGCGGCAGCGG------CAACAACAACCAGGGCCACAAGGGCAATGGCAACAACAACAACAA------CCA
GCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGCTGCCAATGTGAGCAAGGATGGCGGCGGCAAGGGCA
GCGGCGGGCAGAAGGAGCAGGGCAAGCTTGGTGGCGG---AGTTGGGAGCCTCATGCAGGGGCTCAAGGCCTTCAAGAGC
CAGCACAGCAAGCACCAGCTCCCTGACCTGAGCTCGGAT---GACGAAGATGATATGTATGATGATGAGGACGACGAAGA
CGATGATGAGTTTGACGATGAGTATGAGGACGACCTCCGCTTCCTCGGGGACAAGATGAGCCAGCTCGGCATCCTCAGGC
AGCGCGCCGAGGCTGCGGCGGCGATCAACGCCAAGAACAAGAACGGCGGCAATGCCGCCAATGTCGGCGGCAAGAAAGGC
GCCCCAGCAGGGAACAACCACCATCAGAACAACCAGAACCAGAAGATGAACATGGGCGCGGCGGCAGGGAATGCCAAGAT
GGGGAATGGCGCTCAGAAGAACACTGGCGGCATCGGTGGCCTGATGGGCCTGAACCAT---GGCCTGGGAGCTGGCGGTG
CTGCTCCTGGCATACAGGGCTACACAGGCGGCG---GCTTCAGCCACCCTTCCTCCTACGGTGCCGCCGGCTACGGAGGG
CTCCAGCAGCAGCAGCAG---------AACGGCAACCTGATGGCGAGCATGCAGGGGTACCACAACAACCCGGCGGCGGC
CGCGGCGATGATGAACAACCTGAGGGGCAACATGATGATGCACCAGCCGCAGCCGCAGCCGCAGATGATGTACCACCGGT
CTCCGCAGATCAGCCCTTACACGGCCTACTACAACCCATACAGCTACTACTACCAGCAGCCCGGCGGCGGCGGCGGCGGC
GGCTCCTCCGCCTACCACCCCGGCGGCGGCACCGGCGACGTCGAGACCATGTTCAGCGACGAGAACACCAAGGGCTGTGC
CATCATGTAGTAGGATTGTAGTTAGCGGTGTCAAGAGTCACAATGTAGAGCTTGGGCGATGAGGAGT-GGTAGCGGTGAA
TGGTGATGCAGTCGTACTATGTTTTTTTCCACTAGTATTTTGCTGCCTTTATGTTTTT-CTCCTGTATCAAGAATGAATG
AATCATGGGTGTTGACTTGGGATGATGCGCTGTTTGAAACTGAATGAAGGCAGTGGTGGCACTTCAGAGGATGATGATCA
AGCTGTGTAGTGTAATTA--ATTACCTTTGACTGCCTTGTGCTTTGGCCATGCCCTCTGAGGCCATGACCAAACTGTTTA
TTTAGTGTAATTACCTTTGCTGTGCTGAGTAGTTGTCAGTACTGGGGTGCTGTATCGCTGGCAGAAATTGTCCCACAC--
C------GTCCAAAGGAGGATCATCATCATGCCACATGAGTGAGGCCGGTG-------AGCATGCCATGTGAACAGAAAA
TAAACATTAGCATGTAC---------TAGTAAATTAAGTACAGGCTACAGAGGACTGGACTGGGCA-ATTTTAAGCCATG
ACACCGTATC-TTATAGTACCATAAACAATTTCTCAGGGCAGTGTTCTGGGTGGCGAAATACTGTCGAGAGAATAGGAGA
GGAGTTATACATTGCAAATGGATTCCAAGAACCAAGAGGAAACCTGCACACCTGTGACATTG--GAGATCATTCAGTTAA
GGAACGATTACTGAGGGAGGAGGAGTCCATT--GGGGCTTCAAAAAAAGCTGTGGCCTGCTAAAAACCAAAGGCGGCCAA
TTATGATAGAATT----TCATGATGAAAGTTTATGCTGGAAAAGGTGGTTGAAAATGAATGCGGACATGATTGTAATATG
TAGCCCCCTTCATGAGCACATTGGTCCCTAACC-AAAATGAATTCTGATCTCCTCAAAGATTTTGCCAGACTATATAGTA
CAGAGTTCATAATGGCCATCTCCCACCAATATGCGAAATACAGATCAGTGTTCAGAAAAAGCAAATATGAGGTGGTATAC
AGTGTTATC
>chr3D_30
GAATAA----------------------------AAAAGTGACAACTTTATGGTACCATGAATCTCTCTTCTCCATCCAC
AACAAAAGAGAAGAGACGATGATAACTGCACATTATTACTGGCTAATTAAACTGTCCCGGACCAATTTGGTTTATCCCAC
CAACCCTGCCTCAAGCACTGTAAAGTGCCACTCTAAGCATAGCAAGTCCACTTAACACCGTACCCTACTCAACCAATTGG
TACACGGCCGGCCAGCCAGCCAGCCGCCCAGCTAGCAGCAGACCATCAAGCTGGTAACATGCCGGGCCTGCAACATGTTC
TTCACCGGCCACAGGTGAGTCAGCTACCACTATTGTACTC--TACACATGTGTACAACCCACACACCCACGTACGGGTTA
TTAGTGCGCTGGACCGTGGCGCCCTT---CACAATTTTATCATGGTACAACCCTAGTTTTT--CCCCACTGCCAGTTCCA
AACTCCAAAGCCCATCCCCCACTCGGCCAGCCTCTCCAGACAGCCTCCTGGAGGGACTACAAAAGAAGCGATATTTTTTT
CACCACACCATCCTAACAAGAGCGTGCATGTGT--------------------------------GAGAGAGAGATATTT
TTTCACCACACTGTCCTAACGAGAGGGTGTGAGACAATGAGGGAGGCCGTGT--GTAACCGTGCATGTACCGTGCGGTAC
AAACCTTGCAGTTTATA---AAATTTTACCGGAGCGGTGGGGGCAGCAGGGCAGACAGGGTGAAGGAGGAGGATGGCCCT
CG----------------------CCCATGTGGGAGGGTCAGTGAGATTATAAGAAGAGTGGGGAGGAAGAAG-------
--GGAAGGAGT----AGTAGAAGTTAGAACCGAACGACACATTCTTAAATGCAGGGAAGGAGGGGTGGCTTCTTCTCCTC
CTCCTCCTCCTCCTGCAACGGTACAAGAGCCAGCGCCAGCGCCAGCAGCGCCATCACTTCCCCACTCCTCCACTAGCCAC
TGCCCCTCCCTCC--------------CACACAGACACGCTCTCTTCCCCCATCCAT-----CCTCCCTCCTCCCAAAGA
GAGCTTGAGCAACAGCTTGGCAACGGTGGTGGCTCAGCAGAGATGACCAAAGATGAGGACTTCAAGCTGGTCAAGATCCA
GGTA------------------TCCCTCTCTTGGCGCCCTCTGCTTCTGTTTCTTTCCATCTTTCTCTGTAATGTGGTGT
GTGGATTTGTGGGGAGCTCG------ACTGTTCTTGAGA-----------------------GAGCTGATAAACTGTTCT
TGTTTCTTGGGGCTATGCTTGCTT-GCTTCGCCTCTTCCTGCAGACCCATGTCCTGAGGGTGAACATACACTGCGACGGC
TGCAAGCACAAGGTCAAGAAGCTGCTCCAGAGGATCGAAGGT------ACACACACGCCCAGCTACTGTCCATCGCC---
-----TTCCAATCCAATCCAATCCTCCATGTCTTTTCTGTTGGTTTCTTCT-------TGCACATGCGCCATTCTAGCGG
TCTAAGCTGCAGGTGGTGCTACTTGCTCT------TGTTGTTGTTATAGCCCCCACTTTTTTTCTCTTGACACACGCTTT
GCTGTAACTGTAAGTATCTCTTCTGCTCTGTTAATAAAGGCCTGAAGCTTTGCTCCTTGCCTGCCCACTTGCATCTGGG-
CTGAAAGCACCCCCACGAGTCTTGCCAAATGCGCTTACACGACAAGAAATCCCTGCTTTTCATGTGGTCAGG-CCATGCC
AATTAAATGTTC--ACACCAAATTGATGTGGTATAAGTAAAGTAGTTATGGATGTTGTGAGTAAATC-TGAGCTAATTGA
TAGT----TGGTGAATAGGTCCAAACTCACCCGATG---TATGTAGTAGCTGAGGCGACCGCTGTGCCGAATCTCACAAA
CGGCTGATAAGGAAATGACACACACTGGATGGATGGATGAAC------------GAACCCCACCCGGACTCACTGCACAA
ACCTACACAT-CTTGTGATGGTTCATTAGTTATGAGCACTAGTAATTTGTACAGTAATCTTTACCATGGCTCACGAGCAA
CCTGTGAACTCTCTCCCTCTGCTTCTTGTGTGTCGTTGCAGGCGTCTACTCGGTGGCCATCGATGTGGACAACCACAAGG
TCACGGTGACCGGCAGCGTCGACTCGGAGACGCTCATCAGGAAGCTCACCAGAGGGGGCAAGCACGCAGAGCTGTGGTCG
CACCAGAAGGGCGGCC------------ACAACAACCAGGGCCACAAGGGCGGCGGCGGCGGCGG---CAA------CCA
GCAGAAGCAGCAGCAGCAACACCAGCAGCAGCAG---AAGCAGGCTGCCAATGTGAGCAAGGATGGCGGCGGCAAGGGCG
GCGGCGGGCAGAAGGAGCAGGGAAAGCTTGGCGGCGG---AGTCGGGAGCCTCATGCAGGGCCTCAAGGCCTTCAAGAGC
CAGCACAGCAAGCACCAGCTCCCTGAGCTGAGCTCGGACGACGACGATGATGATATGTATGATGATGAGGATGATGAGGA
CGATGATGAGTTTGACGATGAGTATGAGGACGACCTCCGCTTCCTCGGGGACAAGATGAGCCAGCTTGGCATCCTCAGGC
AGCGCGCCGAGGCTGCGGCGGCGATCAACGCCAAGAACAAGAACGGCGGCAATGCCGCCAATGTCGGCGGCAAGAAAGGC
GCCCCGGCAGGGAACCACCACCATCAGAACAACCAGAACCAGAAGATGAACATGGGCGCGGCGGCGGGGAATGCCAAGAT
GGGGAACGGCGCTCAGAAGAACGCTGGCGGCATCGGTGGCCTCATGGGCCTGAACCAT---GGCCTGGGGGCCGGCGGTG
CTGCTCCTGGCATACAGGGCTACACAGGCGGCGGCGGCTTCAGCCACCCGTCCTCCTACGGCGCCGCCGGCTACGGAGGG
CTCCAGCAGCAGCAGCAGC------AGAACGGCAACCTGATGGCGAGCATGCAGGGGTACCACAACAACCCGGCGCCGGC
CGCGGCGATGATGAACAACCTGAGGGGCAACATGATGATGCACCAGCCGCAGGCGCAGCCGCAGATGATGTACCACCGGT
CTCCCCAGATCAGCCCCTACACCGCCTACTACAACCCATACAGCTACTACTACCAGCAGCCCGGCGC------CGGCGGC
GGCTCCTCCGCCTACCACCCCGGCGGCGGCACCGGCGACGTCGAGACCATGTTCAGCGACGAGAACACCAAGGGCTGTGC
CATCATGTAGTAGGATTGTAGTTAGCGGTGTCAAGAGTCACAATGTAGAGCTTGGGCGATGAGGAATGGGTAGTGGTGAA
TGGTGATGCAGTCGTACTATGGTTTTTTTCACTAGTATTTTGCTGCCTTTATGTTTTTTCTCCTGTATCAAGAATGAATG
GATCATGGGTGTTGACTTGGGATGATGTGCTGTTTGAAACT----GAAAGCAGTGGTGCCACTG----------------
---TGTGTAATTAG--TAGTATTACCTTTGACTGCCTTGTGCTTTGGCCCTGCCCTCTGAGGCCATGTCCAAGCTGTTTA
TTTAGTGTAATTACCTTTGCTGTGCTGAGTAGTTGTCAGTACCGGGGAGCTGTATCGCTGATAGAAATTGTCCCACACAC
CAACACCGTCCTAAGGATGATGATCATCATGGCACATGAGTGAAGCCGGTGAGCTGTGAGCATGCCATGTGAGCAGAGAA
TAAACATTAGCATGTAC---------TGGTAAATTAAGTACAGGCTACAGAGGGCTGGACTGGGCA-ATTTTAAGCCACG
ACGCCGTATC-TTATAGTACCATAAACAATTTCTCGGGGCAGTGTTCTGGGTGGCGAAATACTGTCGAGAGAATAGGAGA
GCAGTTA--------------ATTCCAAGAACCAAGAGGAAGT-TGCACACCTGCAACACTGAAGAGCTCATCCAGTTCA
GCAACGATTTGTAAGGGAGGAGGGACTCCATTGGGGGCTTCAGAAAAGGCTGTGGCCTGCTAAAAACCAAAGGCGGCCAA
TTATGATTGAATT----TCATGATGAAAGTTTATACTGGAAAAGGTGGTTGAAAATGAATGCGGACATGATTGTAATACG
TAGCCCCCTTCATGACCACATTGGTCCCTGACCAAAAATGAATTCTGATCTCCTCAAAGATTTTGCCAGACTACACAGTA
CAGGGTTCATAATGGCCATCTCCCACCAATACGCGAAATAAAGATCAGTGTTCAG-AAAAGCAAATATGAGGTGGTATAC
AGTGTTATC
>chr3B_563
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-----------------------------------------------GTGTGTAATAACCGTGCATGTACCGTGTGGTAC
AAACCTTGCAATTTACTATCAAATTTTACCGGAGTGGTGGGGGCGGCAGGGCAGACAGGGTGAAGGAGGAGGATGGCCCT
CG----------------------CCCATGTGGGAGGGTCAGTGAGATTATAAGAAGAGTGGGGAGGAAGAAG-------
--GGAAGGCCGGAGGAGTAGAAGTTAGAACCGAACGACACATTCTTAAATGCAGGCAAGGAGGGGTGGCTTCTTCTCCTC
CTCCTCCTCCT---GCAACGGTACAAGAGCCAGCGCCAGC---------ACCATCACTTCCCCACTCCTCCACTAGCCAC
TGCCCCTCCCTCCCTCACCCCC---------CACACACGCTCTCTTCCTCCATCCACCCCTCCCTCCATTCTCCCAAAGA
AAGCTTGCAAA-CA-----------GTGGTGGCTCTGCAGAGATGACCAAAGATGAGGACTTCAAGCTGGTCAAGATCCA
GGTACCTCACTCTCTCCATCCATCCCTCCCCTGGCACCCTCTGTTTCTGTTTCTTTCCATCTTTCTCTGTAGTGTGGTGT
GTGGATTTGTGGGGAGCTCATC---AACTGTTCTTGGTGCTTGA------------GGGAGGGAGCTCATAAACTGTTCT
TGTTTCTTGGGGCTCTGCTTTGCTCGCC--------TCCTGCAGACCCATGTCCTGAGGGTGAACATACACTGCGACGGC
TGCAAGCACAAGGTCAAGAAGCTGCTCCAGAGGATCGAAGGTACACACACACACACGCCCAGCCACTGTCCATCACCTTC
CAAATTTCCAATCCAATCCAATCCTCCATGTCCTTTCTGTTGGTTCCTTCT-------TGCACATGCGCCATTCTAGCGG
TCTAAGCTGCTGCTGGTGCTACTTGCTCCTGCTGCTGTTGTTGTTATAAA------------------------------
--TGTAAATGTAAGCATCTCCTCTGCCCTGTTAATAAAGGCCTGAGGCTTTGCTCCTTGCCTGCCCGCTTGCATCTGGC-
CTGAAAGCGCCCCCACGAGTCTTGCCAAATGCGCTTACACGACAAGAAATCCCTGCTTTTCATGCGGTCAGGGCCATGCT
AATTAAATGCCCAGAGACCAAATTGATGTAG--TAACTAAATTAGTTATGGATGTTGTGAGTAAATCCTGAGGTAATTTG
CTAGTTAGTGGATAACAGGTCCAAAACTCACCCCATGTGTATGTAATGGCTGAGGTGATTGCTGTGCCGAATCTCACAAA
CGGCTGAT-AGGAAATGACACACACAGGATGGATGGATGGGTGGGTGGATGGATGAACCCCACCCAGACTCACTGCACAA
ACCTACACATTCTTGTGATGCTTAATTGGTGGTGAACAGTAGTACTTTGCACAGTAATTTTTACCGTGGCTCACGAGCAA
GTTGTGAACTCTCC-TCTCTGATTTCTGTTCA---TTGCAGGCGTCTACTCGGTGGCCATCGATGTGGACAACCACAAGG
TCACGGTGACCGGCAGCGTGGACTCTGAGACGCTGATCCGGAAGCTCACCAGAGGGGGCAAGCACGCAGAGCTGTGGTCG
CACCAGAAGGGCGGCAACGGCGGCAACAACAACAACCAGGGCCACAAGGGCGGCGGCGGCGGCGG---CAACAACAACCA
GCAGAAGCAGCAGCAGCAGCAGCAGCAGCAG------AAGCAGGCTGCGAATGTGAGCAAGGATGGCGGCGGCAAGGGCA
ATGGCGGGCAGAAGGAGCAGGGCAAGCTTGGTGGTGGTGGAGTTGGGAGCCTCATGCAGGGCCTCAAGGCCTTCAAGAGC
CAGCACAGCAAGCACCAGCTCCCTGAGCTGAGCTCGGACGACGACGACGACGATATGTATGATGATGAGGATGATGAGGA
GGATGATGAGTTTGACGATGAGTACGAGGACGACCTCCGCTTCCTCGGGGACAAGATGAGCCAGCTCGGCATCCTCAGGC
AGCGTGCCGAGGCTGCGGCGGCGATCAACGCCAAGAACAAGAACG---------CCGCCAATGTCGGCGGCAAGAAAGGC
GCCCCGGCAGGGAACAACCACCATCAGAGCAACCAGAACCAGAAGATGAACATGGGCGCGGCGGCGGGGAATGCCAAGAT
GGGGAATGGCGCTCCGAAGAACACTGGCGGCATCGGCGGCCTGATGGGCCTGAACCATGGCGGCCTGGGGGCGGCCGGTG
CTGCCCCTGGCATACAGGGCTACACAGGCGGCGGCGGCTTCAGCCACCCGTCCTCCTATGGCGCCGCCGGCTACGGAGGG
CTCCAGCAGCAGCAGCAGCAGCAGCAGAACGGCAACCTGATGGCGAGCATGCAGGGGTACCACAACAACCCGGCGGCGGC
CGCGGCGATGATGAACAACCTGAGGGGCAACATGATGATGCACCAGCCGCAGGCGCAGCCGCAGATGATGTACCACCGGT
CTCCCCAGATCAGCCCTTACACCGCCTACTACAACCCATACAGCTACTACTACCAGCAGCCCGGC---GGCGGCGGCGGC
GGCTCCTCCGCCTACCACCCCGGCGCCGGCACCGGCGACGTCGAGACCATGTTCAGCGACGAGAACACCAAGGGCTGTGC
CATCATGTAGTAGGATTGTAGTTAGCGGTGTCAAGAGTCACAATGTAGAGGATGATGGGCT-------------------
TGGTGATGCAGTCGTACTACTTTTTT----ACTAGTATTTTGCTGCCTTTATGTTTTTTCTCCTGTATCAAGAATGAATG
AATCATGGGTGTTGACTTGGGATGATGTGCTGTTTGAAACTGAATGAAAGCAGTGGTGCCACTG----------------
---TGTGTAGAGAAATTAGTATTATCTTTGACTGCCTTGTGCTTTGGCCCTGCCCTCTGAAGCCATGACCAAGCTGTTTA
TTTAGTGTAATTACCTTTGCTGTGCTGAGTACTTGTCAGTACTGGGGTGCTGTATCGCTGGCAGAAATTGTCCCACACAC
C------GTCCTAAGGATGATCATCATCATGGCACATGAGTGAAGCCG-------GTGAGCATGCCATGTGAACAGAAAA
TAAACATTAACATGTAGTAGTAGTAGTAGTAAATTAAGTACAGAGGACAGAGGACTGGACTGGGCAAATTTCAAGCCATG
ACGCCGTACCTTTATAGTACTATAAACAATTTCCCAGGGCAGTGTTCTGGGTGGCGAAATACTGTCGAGAGAACAGGAGA
GCAGTT--------------GATTCCAAGAACCAAGAGGAAGT-TGCACACCTGCAACACTGAAGAGCTCACCCAGTTCA
GCAACGATTTGTAAGGGAGGAG-GACTCCATTGGGGGCTTGAGAAAAAGCTGTGACCTGCTAAAAACCAAAGGCGGCCAA
TTATGATAGAATTCCATTCATGATGAAAGTTTATGCTGGAAAAGGTGGTTGAAAATGAATGCGGGCATGATTGTAAT--G
TGGCTCCCTTCATGAGCACATTGGTCCCTGACCAAAAATGAATTCTGATCTCCTCAAAGATTTTGCCAGACTATATAGTA
CAGGGTTCATAATGGCCATCTCCCACCAATACGCGAAATGAAGATCGGTGTTCAGAAAAAGCAAATATGAGGTGGTATAC
AGTCTTATC
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S----
----S----S---SSSSSS-S-SS-S------------S---------S---S-SS-SS--------S-----SSSSSSS
SSSSS-S-------------------------------------------------------------------------
--------------------------------------------------S---S-------S-----------------
------------S---S--------S-S------------SS--S-------------S-S---S-S-SSSSSSSSS---
S-SSS--S---------S-S----SSSSS--S------------S-----S--S-SSS--SSS-----------S-----
--S----------------S--S------------S-----------------S--------------S-----------
--------S-----S------------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----
-------------------------S----------------SS-S----------------------------------
------------S--S-S----------------S-------------------S-----S---------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------------S-------------------------S-SS--SS-SSSSSSS
SS------------------------------------------------------------------------------
--------------------------------S--------------S--------------------------------
----------S-S-S---S---SSSSS------------------------SS-----S--S--------------S---
-----------S--------------------------------------S-----------------------------
--------S--------------------SSSSS-S----------S-S-S-S-S-SSSSSS-SSSSS------------
-----------S-------SS-SSS--------------SSSSSSSSSSSSSSSSS--------------S---------
--------------S-----------------------------------------------------------------
-------------------------------S---------------------------------S--------------
-------------------------S-S---S-----------S------SSSSSSSS----------------------
-------------------------S------------------------S---S----S--SSSS-----S--------
-------------------------------------------S--------SS-S----------------------SS
------S----------------------------------------------------------S-----------S--
-------------------S---S------------------------------S-------------------------
---------SS------S-------------------------------------------S----S-------------
------S------------------------------------------------------------------------S
----S--S----------------------S--------------------S----------------------------
---------S----------------------------------------------------------------------
----------S--------------------------------------------------------------------S
----------------S----------------------------------SSS---SS-SS-SSSSS------------
----------------------------------SSS-------------------------------------------
-------------------------------------------------------------S------------------
--------------------------S-----------S--------S-----------------------S--S--S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-----------------------------------------------------------S--------------
---------------------------------------------------------------------S--S-------
-------------------------------------------------S-----------S------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
----S-----------------S-------------------------------------------SS------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S-------S------
----------------------------S---------------------------------------------------
---------------------------S--------------------S---------S----SSSSSSSSSSSSSSSSS
SSS---------S------------------------------------S----------------------S-------
--------------------------------------------------------------------------------
-----------S-----S-------------S-----------S------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-S-----SSSSSSSSSSSSS---------------------SSS----------SS---S-------S----S-----S-
-S-------SS-S----------SSSS-SS------------S-------------------------------------
------------------------------------------------------------------------------S-
-----------------------------S--------------------------------------------------
---S---------------------------S--------S---------------------------------------
---------
>forward_809
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---------------------------------------------------------------------AGGATGGAAGA
GATGGCCCT-----------------------------------------------------------------------
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>reverse_2806
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-----AGCAGGGAACAACCACCATC-------------------------------------------------------
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>forward_1330
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------------------------------TTCTTGGTGTGGTGGTGCTT------------------------------
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>reverse_3426
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-----------------------------------------------------------------GTGGTAGCGGTGAAT
GGTGA---------------------------------------------------------------------------
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---------
