Multiple sequence alignment - TraesCS3A01G037700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G037700 chr3A 100.000 3745 0 0 1 3745 20337991 20334247 0.000000e+00 6916.0
1 TraesCS3A01G037700 chr3B 90.156 3068 192 59 273 3287 23182033 23185043 0.000000e+00 3892.0
2 TraesCS3A01G037700 chr3B 85.484 806 69 28 2743 3518 23193563 23194350 0.000000e+00 797.0
3 TraesCS3A01G037700 chr3B 86.159 578 40 22 2722 3287 23317308 23317857 4.170000e-164 588.0
4 TraesCS3A01G037700 chr3B 90.805 174 13 1 3038 3211 23142389 23142219 2.910000e-56 230.0
5 TraesCS3A01G037700 chr3D 90.862 2900 166 53 394 3279 16031655 16034469 0.000000e+00 3795.0
6 TraesCS3A01G037700 chr3D 94.021 485 26 2 2002 2483 15996336 15995852 0.000000e+00 732.0
7 TraesCS3A01G037700 chr3D 82.684 231 22 12 173 403 16031412 16031624 4.940000e-44 189.0
8 TraesCS3A01G037700 chr1D 81.413 538 52 18 3116 3623 451533943 451533424 2.710000e-106 396.0
9 TraesCS3A01G037700 chr1D 83.799 179 13 10 2901 3076 451534119 451533954 5.010000e-34 156.0
10 TraesCS3A01G037700 chr1B 82.759 116 12 4 3096 3211 621064216 621064109 3.080000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G037700 chr3A 20334247 20337991 3744 True 6916 6916 100.000 1 3745 1 chr3A.!!$R1 3744
1 TraesCS3A01G037700 chr3B 23182033 23185043 3010 False 3892 3892 90.156 273 3287 1 chr3B.!!$F1 3014
2 TraesCS3A01G037700 chr3B 23193563 23194350 787 False 797 797 85.484 2743 3518 1 chr3B.!!$F2 775
3 TraesCS3A01G037700 chr3B 23317308 23317857 549 False 588 588 86.159 2722 3287 1 chr3B.!!$F3 565
4 TraesCS3A01G037700 chr3D 16031412 16034469 3057 False 1992 3795 86.773 173 3279 2 chr3D.!!$F1 3106
5 TraesCS3A01G037700 chr1D 451533424 451534119 695 True 276 396 82.606 2901 3623 2 chr1D.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1008 0.039764 TCGAGGAGGAGGAGAAAGCA 59.960 55.0 0.0 0.0 0.0 3.91 F
1285 1343 0.037232 GAGTGGTAAGCAGAGCCGTT 60.037 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2009 0.108424 CAGGGAAGAACAGAGAGGCG 60.108 60.000 0.00 0.00 0.00 5.52 R
3218 3336 1.133790 GCTTAAAGACATGCCAGCAGG 59.866 52.381 2.22 2.22 38.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.105006 TGACAAAGCAGATCAGAGCC 57.895 50.000 0.00 0.00 0.00 4.70
21 22 1.348696 TGACAAAGCAGATCAGAGCCA 59.651 47.619 0.00 0.00 0.00 4.75
22 23 2.224597 TGACAAAGCAGATCAGAGCCAA 60.225 45.455 0.00 0.00 0.00 4.52
23 24 3.015327 GACAAAGCAGATCAGAGCCAAT 58.985 45.455 0.00 0.00 0.00 3.16
24 25 3.428532 ACAAAGCAGATCAGAGCCAATT 58.571 40.909 0.00 0.00 0.00 2.32
25 26 3.192844 ACAAAGCAGATCAGAGCCAATTG 59.807 43.478 0.00 0.00 0.00 2.32
26 27 1.390565 AGCAGATCAGAGCCAATTGC 58.609 50.000 0.00 0.00 41.71 3.56
27 28 1.100510 GCAGATCAGAGCCAATTGCA 58.899 50.000 0.00 0.00 44.83 4.08
28 29 1.202268 GCAGATCAGAGCCAATTGCAC 60.202 52.381 0.00 0.00 44.83 4.57
29 30 1.063616 CAGATCAGAGCCAATTGCACG 59.936 52.381 0.00 0.00 44.83 5.34
30 31 1.065926 AGATCAGAGCCAATTGCACGA 60.066 47.619 0.00 0.00 44.83 4.35
31 32 1.063174 GATCAGAGCCAATTGCACGAC 59.937 52.381 0.00 0.00 44.83 4.34
32 33 1.133253 CAGAGCCAATTGCACGACG 59.867 57.895 0.00 0.00 44.83 5.12
33 34 1.005037 AGAGCCAATTGCACGACGA 60.005 52.632 0.00 0.00 44.83 4.20
34 35 1.016130 AGAGCCAATTGCACGACGAG 61.016 55.000 0.00 0.00 44.83 4.18
35 36 1.291877 GAGCCAATTGCACGACGAGT 61.292 55.000 0.00 0.00 44.83 4.18
36 37 1.132640 GCCAATTGCACGACGAGTC 59.867 57.895 0.00 0.00 40.77 3.36
37 38 1.565156 GCCAATTGCACGACGAGTCA 61.565 55.000 0.00 0.00 40.77 3.41
38 39 1.078709 CCAATTGCACGACGAGTCAT 58.921 50.000 0.00 0.00 0.00 3.06
39 40 1.464608 CCAATTGCACGACGAGTCATT 59.535 47.619 0.00 0.00 0.00 2.57
40 41 2.474526 CCAATTGCACGACGAGTCATTC 60.475 50.000 0.00 0.00 0.00 2.67
41 42 1.359848 ATTGCACGACGAGTCATTCC 58.640 50.000 0.00 0.00 0.00 3.01
42 43 0.317160 TTGCACGACGAGTCATTCCT 59.683 50.000 0.00 0.00 0.00 3.36
43 44 1.170442 TGCACGACGAGTCATTCCTA 58.830 50.000 0.00 0.00 0.00 2.94
44 45 1.749063 TGCACGACGAGTCATTCCTAT 59.251 47.619 0.00 0.00 0.00 2.57
45 46 2.946990 TGCACGACGAGTCATTCCTATA 59.053 45.455 0.00 0.00 0.00 1.31
46 47 3.568430 TGCACGACGAGTCATTCCTATAT 59.432 43.478 0.00 0.00 0.00 0.86
47 48 4.758165 TGCACGACGAGTCATTCCTATATA 59.242 41.667 0.00 0.00 0.00 0.86
48 49 5.239963 TGCACGACGAGTCATTCCTATATAA 59.760 40.000 0.00 0.00 0.00 0.98
49 50 6.147581 GCACGACGAGTCATTCCTATATAAA 58.852 40.000 0.00 0.00 0.00 1.40
50 51 6.807230 GCACGACGAGTCATTCCTATATAAAT 59.193 38.462 0.00 0.00 0.00 1.40
51 52 7.201359 GCACGACGAGTCATTCCTATATAAATG 60.201 40.741 0.00 2.03 34.80 2.32
52 53 6.807230 ACGACGAGTCATTCCTATATAAATGC 59.193 38.462 0.00 0.51 33.76 3.56
53 54 6.806739 CGACGAGTCATTCCTATATAAATGCA 59.193 38.462 4.02 0.00 33.76 3.96
54 55 7.489435 CGACGAGTCATTCCTATATAAATGCAT 59.511 37.037 0.00 0.00 33.76 3.96
55 56 9.155975 GACGAGTCATTCCTATATAAATGCATT 57.844 33.333 5.99 5.99 33.76 3.56
64 65 8.279970 TCCTATATAAATGCATTATGTGTGCC 57.720 34.615 13.39 0.00 41.83 5.01
65 66 7.339212 TCCTATATAAATGCATTATGTGTGCCC 59.661 37.037 13.39 0.00 41.83 5.36
66 67 2.582728 AAATGCATTATGTGTGCCCG 57.417 45.000 13.39 0.00 41.83 6.13
67 68 1.473258 AATGCATTATGTGTGCCCGT 58.527 45.000 11.02 0.00 41.83 5.28
68 69 0.740149 ATGCATTATGTGTGCCCGTG 59.260 50.000 0.00 0.00 41.83 4.94
69 70 0.322008 TGCATTATGTGTGCCCGTGA 60.322 50.000 0.00 0.00 41.83 4.35
70 71 0.098728 GCATTATGTGTGCCCGTGAC 59.901 55.000 0.00 0.00 36.61 3.67
71 72 1.447945 CATTATGTGTGCCCGTGACA 58.552 50.000 0.00 0.00 0.00 3.58
72 73 1.398041 CATTATGTGTGCCCGTGACAG 59.602 52.381 0.00 0.00 0.00 3.51
73 74 0.321210 TTATGTGTGCCCGTGACAGG 60.321 55.000 0.00 0.00 0.00 4.00
74 75 1.188871 TATGTGTGCCCGTGACAGGA 61.189 55.000 0.00 0.00 0.00 3.86
75 76 2.665185 GTGTGCCCGTGACAGGAC 60.665 66.667 0.00 0.00 0.00 3.85
76 77 3.157949 TGTGCCCGTGACAGGACA 61.158 61.111 0.00 0.00 0.00 4.02
77 78 2.347490 GTGCCCGTGACAGGACAT 59.653 61.111 0.00 0.00 0.00 3.06
78 79 1.188871 TGTGCCCGTGACAGGACATA 61.189 55.000 0.00 0.00 0.00 2.29
79 80 0.178068 GTGCCCGTGACAGGACATAT 59.822 55.000 0.00 0.00 0.00 1.78
80 81 0.177836 TGCCCGTGACAGGACATATG 59.822 55.000 0.00 0.00 0.00 1.78
81 82 0.464036 GCCCGTGACAGGACATATGA 59.536 55.000 10.38 0.00 0.00 2.15
82 83 1.539065 GCCCGTGACAGGACATATGAG 60.539 57.143 10.38 0.00 0.00 2.90
83 84 1.757118 CCCGTGACAGGACATATGAGT 59.243 52.381 10.38 2.24 0.00 3.41
84 85 2.223829 CCCGTGACAGGACATATGAGTC 60.224 54.545 10.38 11.58 37.80 3.36
85 86 2.541794 CCGTGACAGGACATATGAGTCG 60.542 54.545 10.38 3.75 39.42 4.18
86 87 2.354821 CGTGACAGGACATATGAGTCGA 59.645 50.000 10.38 0.00 39.42 4.20
87 88 3.003793 CGTGACAGGACATATGAGTCGAT 59.996 47.826 10.38 0.00 39.42 3.59
88 89 4.294232 GTGACAGGACATATGAGTCGATG 58.706 47.826 10.38 3.13 39.42 3.84
89 90 3.243535 TGACAGGACATATGAGTCGATGC 60.244 47.826 10.38 0.00 39.42 3.91
90 91 2.036475 ACAGGACATATGAGTCGATGCC 59.964 50.000 10.38 7.22 39.42 4.40
91 92 2.298446 CAGGACATATGAGTCGATGCCT 59.702 50.000 10.38 11.63 39.42 4.75
92 93 2.560542 AGGACATATGAGTCGATGCCTC 59.439 50.000 10.38 0.00 39.42 4.70
93 94 2.297315 GGACATATGAGTCGATGCCTCA 59.703 50.000 10.38 6.67 42.74 3.86
94 95 3.312828 GACATATGAGTCGATGCCTCAC 58.687 50.000 10.38 0.00 41.47 3.51
95 96 2.695147 ACATATGAGTCGATGCCTCACA 59.305 45.455 10.38 0.00 41.47 3.58
96 97 3.323115 ACATATGAGTCGATGCCTCACAT 59.677 43.478 10.38 0.00 41.47 3.21
97 98 2.235845 ATGAGTCGATGCCTCACATG 57.764 50.000 6.38 0.00 41.47 3.21
98 99 0.897621 TGAGTCGATGCCTCACATGT 59.102 50.000 0.00 0.00 39.84 3.21
99 100 1.134995 TGAGTCGATGCCTCACATGTC 60.135 52.381 0.00 0.00 39.84 3.06
100 101 1.135915 GAGTCGATGCCTCACATGTCT 59.864 52.381 0.00 0.00 39.84 3.41
101 102 1.552337 AGTCGATGCCTCACATGTCTT 59.448 47.619 0.00 0.00 39.84 3.01
102 103 2.760650 AGTCGATGCCTCACATGTCTTA 59.239 45.455 0.00 0.00 39.84 2.10
103 104 3.386078 AGTCGATGCCTCACATGTCTTAT 59.614 43.478 0.00 0.00 39.84 1.73
104 105 3.738282 GTCGATGCCTCACATGTCTTATC 59.262 47.826 0.00 0.00 39.84 1.75
105 106 3.384467 TCGATGCCTCACATGTCTTATCA 59.616 43.478 0.00 0.00 39.84 2.15
106 107 4.039609 TCGATGCCTCACATGTCTTATCAT 59.960 41.667 0.00 0.00 39.84 2.45
107 108 5.243730 TCGATGCCTCACATGTCTTATCATA 59.756 40.000 0.00 0.00 39.84 2.15
108 109 5.928264 CGATGCCTCACATGTCTTATCATAA 59.072 40.000 0.00 0.00 39.84 1.90
109 110 6.128715 CGATGCCTCACATGTCTTATCATAAC 60.129 42.308 0.00 0.00 39.84 1.89
110 111 5.368145 TGCCTCACATGTCTTATCATAACC 58.632 41.667 0.00 0.00 0.00 2.85
111 112 5.104569 TGCCTCACATGTCTTATCATAACCA 60.105 40.000 0.00 0.00 0.00 3.67
112 113 5.822519 GCCTCACATGTCTTATCATAACCAA 59.177 40.000 0.00 0.00 0.00 3.67
113 114 6.488006 GCCTCACATGTCTTATCATAACCAAT 59.512 38.462 0.00 0.00 0.00 3.16
114 115 7.521099 GCCTCACATGTCTTATCATAACCAATG 60.521 40.741 0.00 0.00 36.88 2.82
115 116 7.500227 CCTCACATGTCTTATCATAACCAATGT 59.500 37.037 0.00 0.00 36.89 2.71
116 117 8.806429 TCACATGTCTTATCATAACCAATGTT 57.194 30.769 0.00 0.00 36.89 2.71
117 118 8.892723 TCACATGTCTTATCATAACCAATGTTC 58.107 33.333 0.00 0.00 36.89 3.18
118 119 8.676401 CACATGTCTTATCATAACCAATGTTCA 58.324 33.333 0.00 0.00 36.89 3.18
119 120 9.412460 ACATGTCTTATCATAACCAATGTTCAT 57.588 29.630 0.00 0.00 36.89 2.57
120 121 9.673454 CATGTCTTATCATAACCAATGTTCATG 57.327 33.333 0.00 0.00 36.89 3.07
121 122 9.631257 ATGTCTTATCATAACCAATGTTCATGA 57.369 29.630 0.00 0.00 36.89 3.07
122 123 8.892723 TGTCTTATCATAACCAATGTTCATGAC 58.107 33.333 0.00 0.00 36.89 3.06
123 124 8.892723 GTCTTATCATAACCAATGTTCATGACA 58.107 33.333 0.00 0.00 43.71 3.58
124 125 9.460019 TCTTATCATAACCAATGTTCATGACAA 57.540 29.630 0.00 0.00 42.62 3.18
125 126 9.726232 CTTATCATAACCAATGTTCATGACAAG 57.274 33.333 0.00 0.00 42.62 3.16
126 127 7.943079 ATCATAACCAATGTTCATGACAAGA 57.057 32.000 0.00 0.00 42.62 3.02
127 128 7.144722 TCATAACCAATGTTCATGACAAGAC 57.855 36.000 0.00 0.00 42.62 3.01
128 129 6.714356 TCATAACCAATGTTCATGACAAGACA 59.286 34.615 0.00 0.00 42.62 3.41
129 130 7.394077 TCATAACCAATGTTCATGACAAGACAT 59.606 33.333 5.14 5.14 42.62 3.06
130 131 8.676401 CATAACCAATGTTCATGACAAGACATA 58.324 33.333 10.41 0.00 42.62 2.29
131 132 7.707624 AACCAATGTTCATGACAAGACATAT 57.292 32.000 10.41 0.98 42.62 1.78
132 133 8.806429 AACCAATGTTCATGACAAGACATATA 57.194 30.769 10.41 0.00 42.62 0.86
133 134 8.985315 ACCAATGTTCATGACAAGACATATAT 57.015 30.769 10.41 0.00 42.62 0.86
134 135 8.843262 ACCAATGTTCATGACAAGACATATATG 58.157 33.333 11.29 11.29 42.62 1.78
135 136 9.059260 CCAATGTTCATGACAAGACATATATGA 57.941 33.333 19.63 0.00 42.62 2.15
137 138 9.842775 AATGTTCATGACAAGACATATATGAGT 57.157 29.630 19.63 11.21 42.62 3.41
138 139 9.842775 ATGTTCATGACAAGACATATATGAGTT 57.157 29.630 19.63 8.80 42.62 3.01
139 140 9.317936 TGTTCATGACAAGACATATATGAGTTC 57.682 33.333 19.63 6.71 34.69 3.01
140 141 9.317936 GTTCATGACAAGACATATATGAGTTCA 57.682 33.333 19.63 12.87 0.00 3.18
142 143 9.485206 TCATGACAAGACATATATGAGTTCATG 57.515 33.333 19.63 22.23 37.15 3.07
143 144 9.269453 CATGACAAGACATATATGAGTTCATGT 57.731 33.333 19.63 14.36 37.15 3.21
144 145 8.877808 TGACAAGACATATATGAGTTCATGTC 57.122 34.615 21.52 21.52 44.89 3.06
164 165 6.834168 TGTCTTACATGTCTAGTCATGACA 57.166 37.500 29.02 21.04 45.41 3.58
165 166 7.227049 TGTCTTACATGTCTAGTCATGACAA 57.773 36.000 29.02 21.15 45.82 3.18
166 167 7.840931 TGTCTTACATGTCTAGTCATGACAAT 58.159 34.615 29.02 14.00 45.82 2.71
167 168 8.966868 TGTCTTACATGTCTAGTCATGACAATA 58.033 33.333 29.02 11.18 45.82 1.90
168 169 9.239002 GTCTTACATGTCTAGTCATGACAATAC 57.761 37.037 29.02 19.71 45.82 1.89
169 170 8.966868 TCTTACATGTCTAGTCATGACAATACA 58.033 33.333 29.02 23.92 45.82 2.29
170 171 8.926715 TTACATGTCTAGTCATGACAATACAC 57.073 34.615 29.02 15.37 45.82 2.90
171 172 6.935167 ACATGTCTAGTCATGACAATACACA 58.065 36.000 29.02 19.75 45.82 3.72
198 199 8.196771 TGAACAAATTAAAGTCATTGAGTGCTT 58.803 29.630 0.00 0.00 0.00 3.91
225 226 5.654317 CATGTAGAGATCACATGTCTTGC 57.346 43.478 13.80 0.00 45.32 4.01
227 228 3.771479 TGTAGAGATCACATGTCTTGCCT 59.229 43.478 0.00 0.00 34.41 4.75
229 230 5.422012 TGTAGAGATCACATGTCTTGCCTTA 59.578 40.000 0.00 0.00 34.41 2.69
241 242 7.394359 ACATGTCTTGCCTTAATCAATAAGTGT 59.606 33.333 0.00 0.00 39.56 3.55
242 243 7.144722 TGTCTTGCCTTAATCAATAAGTGTG 57.855 36.000 0.00 0.00 39.56 3.82
256 257 6.878389 TCAATAAGTGTGCATGACAAGACATA 59.122 34.615 0.00 0.00 35.91 2.29
262 263 4.872124 TGTGCATGACAAGACATATGAGTC 59.128 41.667 10.38 11.58 38.81 3.36
263 264 4.272018 GTGCATGACAAGACATATGAGTCC 59.728 45.833 10.38 0.00 39.34 3.85
264 265 4.080975 TGCATGACAAGACATATGAGTCCA 60.081 41.667 10.38 0.18 39.34 4.02
265 266 5.061853 GCATGACAAGACATATGAGTCCAT 58.938 41.667 10.38 2.51 39.34 3.41
266 267 5.049612 GCATGACAAGACATATGAGTCCATG 60.050 44.000 10.38 14.10 39.34 3.66
267 268 5.682234 TGACAAGACATATGAGTCCATGT 57.318 39.130 10.38 5.98 39.97 3.21
287 288 2.346847 GTCTCGCATGTCTTGTCATGAC 59.653 50.000 19.27 19.27 45.41 3.06
319 322 4.346734 AGCATTAAACTCATTGAGCACG 57.653 40.909 13.64 0.00 32.04 5.34
368 371 0.914644 ATGAGTGGTCCATGTGAGGG 59.085 55.000 0.00 0.00 0.00 4.30
480 530 5.938125 GCTGTATCCTCTCAAAGTTACCAAA 59.062 40.000 0.00 0.00 0.00 3.28
521 571 3.384668 CTCACATGTTTCACTCGTGAGT 58.615 45.455 0.00 0.00 45.41 3.41
522 572 3.381045 TCACATGTTTCACTCGTGAGTC 58.619 45.455 0.00 0.00 40.20 3.36
523 573 2.153817 CACATGTTTCACTCGTGAGTCG 59.846 50.000 0.00 0.00 40.20 4.18
543 593 6.573434 AGTCGTGAAATCAGAACATATGCTA 58.427 36.000 1.58 0.00 0.00 3.49
544 594 7.041721 AGTCGTGAAATCAGAACATATGCTAA 58.958 34.615 1.58 0.00 0.00 3.09
576 626 5.682862 CCGTTTGTTAGCATCTGAATATTGC 59.317 40.000 0.00 0.00 36.63 3.56
680 731 0.460987 GAGAGGGACTTGACCATGCG 60.461 60.000 0.00 0.00 41.55 4.73
681 732 2.045926 AGGGACTTGACCATGCGC 60.046 61.111 0.00 0.00 27.25 6.09
682 733 2.359850 GGGACTTGACCATGCGCA 60.360 61.111 14.96 14.96 0.00 6.09
799 850 1.541368 CCTTCCCCTCACCTTCCCA 60.541 63.158 0.00 0.00 0.00 4.37
805 856 2.531685 CTCACCTTCCCACCCCCA 60.532 66.667 0.00 0.00 0.00 4.96
894 952 1.273552 CCACCCTCTCTCCCTCTTCTT 60.274 57.143 0.00 0.00 0.00 2.52
895 953 2.107366 CACCCTCTCTCCCTCTTCTTC 58.893 57.143 0.00 0.00 0.00 2.87
896 954 1.007842 ACCCTCTCTCCCTCTTCTTCC 59.992 57.143 0.00 0.00 0.00 3.46
897 955 1.290732 CCCTCTCTCCCTCTTCTTCCT 59.709 57.143 0.00 0.00 0.00 3.36
901 959 2.243736 TCTCTCCCTCTTCTTCCTCCTC 59.756 54.545 0.00 0.00 0.00 3.71
928 986 3.743396 CAGCTCCAGAAAATAGATACGCC 59.257 47.826 0.00 0.00 0.00 5.68
929 987 2.731976 GCTCCAGAAAATAGATACGCCG 59.268 50.000 0.00 0.00 0.00 6.46
930 988 3.552273 GCTCCAGAAAATAGATACGCCGA 60.552 47.826 0.00 0.00 0.00 5.54
931 989 4.810790 CTCCAGAAAATAGATACGCCGAT 58.189 43.478 0.00 0.00 0.00 4.18
950 1008 0.039764 TCGAGGAGGAGGAGAAAGCA 59.960 55.000 0.00 0.00 0.00 3.91
1008 1066 4.654412 GCGATCGAGATGGCGGCT 62.654 66.667 21.57 0.00 33.10 5.52
1115 1173 4.338710 TTCCTTCCAACCCGCCGG 62.339 66.667 0.00 0.00 0.00 6.13
1134 1192 1.853319 CTCTTGGTTCGTCGTGTGC 59.147 57.895 0.00 0.00 0.00 4.57
1137 1195 1.557443 CTTGGTTCGTCGTGTGCCTC 61.557 60.000 0.00 0.00 0.00 4.70
1144 1202 1.282248 CGTCGTGTGCCTCGTTCATT 61.282 55.000 0.00 0.00 0.00 2.57
1147 1205 0.439985 CGTGTGCCTCGTTCATTCAG 59.560 55.000 0.00 0.00 0.00 3.02
1182 1240 4.388080 CCATGGCGTGCGTGTGTG 62.388 66.667 0.00 0.00 0.00 3.82
1191 1249 1.096386 GTGCGTGTGTGTTGGGGTTA 61.096 55.000 0.00 0.00 0.00 2.85
1198 1256 0.475044 TGTGTTGGGGTTACAGGGTC 59.525 55.000 0.00 0.00 0.00 4.46
1204 1262 1.269703 GGGGTTACAGGGTCATCCGT 61.270 60.000 0.00 0.00 41.52 4.69
1228 1286 1.386533 CCATGGTGATGAAGCAGGTC 58.613 55.000 2.57 0.00 40.26 3.85
1285 1343 0.037232 GAGTGGTAAGCAGAGCCGTT 60.037 55.000 0.00 0.00 0.00 4.44
1355 1416 2.417719 GAGTGTTCTGATCGGTTGCTT 58.582 47.619 0.42 0.00 0.00 3.91
1356 1417 2.413453 GAGTGTTCTGATCGGTTGCTTC 59.587 50.000 0.42 0.00 0.00 3.86
1449 1513 3.823330 GGTCGTCGCCGGAGACAT 61.823 66.667 33.16 0.00 40.98 3.06
1491 1555 2.818169 TTGAGGCTGGCGTTCCTGT 61.818 57.895 0.00 0.00 34.18 4.00
1492 1556 2.032681 GAGGCTGGCGTTCCTGTT 59.967 61.111 0.00 0.00 34.18 3.16
1495 1559 2.281484 GCTGGCGTTCCTGTTCCA 60.281 61.111 0.00 0.00 34.18 3.53
1500 1564 2.742372 CGTTCCTGTTCCAGCCGG 60.742 66.667 0.00 0.00 0.00 6.13
1501 1565 3.056328 GTTCCTGTTCCAGCCGGC 61.056 66.667 21.89 21.89 0.00 6.13
1539 1603 1.153745 AGCAAGATCGAGGACGTGC 60.154 57.895 15.54 15.54 40.69 5.34
1676 1740 3.432588 CGCGAGGACTGGACGACT 61.433 66.667 0.00 0.00 0.00 4.18
1936 2000 2.497419 CGAACGTACGTCGACGCA 60.497 61.111 35.92 23.16 46.87 5.24
1945 2009 2.704193 CGTCGACGCAAACTCCGAC 61.704 63.158 26.59 0.00 45.34 4.79
1997 2066 0.781191 GCGCGTGCTCATTATCTCTC 59.219 55.000 15.02 0.00 38.39 3.20
2000 2069 3.671971 GCGCGTGCTCATTATCTCTCTAT 60.672 47.826 15.02 0.00 38.39 1.98
2177 2246 1.272784 CGGAAATACTGCGCGCGATA 61.273 55.000 37.18 22.05 29.71 2.92
2230 2299 4.980805 GACCACGAGCCACGCCAA 62.981 66.667 0.00 0.00 46.94 4.52
2362 2434 4.405671 GCAGCAGCTGAGCAGGGA 62.406 66.667 27.39 0.00 37.91 4.20
2383 2455 3.475774 GAAGGCGTACGTGCACCG 61.476 66.667 17.90 10.51 44.03 4.94
2509 2581 1.069636 GCTGCAGAGTAAGCAACACAC 60.070 52.381 20.43 0.00 42.17 3.82
2511 2583 1.134250 TGCAGAGTAAGCAACACACCA 60.134 47.619 0.00 0.00 39.39 4.17
2514 2586 2.744202 CAGAGTAAGCAACACACCATCC 59.256 50.000 0.00 0.00 0.00 3.51
2520 2592 1.169661 GCAACACACCATCCGACCAA 61.170 55.000 0.00 0.00 0.00 3.67
2539 2611 3.192212 CCAAAATTCCTTCTGCTCCTGAC 59.808 47.826 0.00 0.00 0.00 3.51
2549 2622 0.978907 TGCTCCTGACAATGCTCTGA 59.021 50.000 0.00 0.00 0.00 3.27
2558 2631 5.392811 CCTGACAATGCTCTGATTTTCTTCC 60.393 44.000 0.00 0.00 0.00 3.46
2560 2633 4.326826 ACAATGCTCTGATTTTCTTCCGA 58.673 39.130 0.00 0.00 0.00 4.55
2569 2642 7.694367 GCTCTGATTTTCTTCCGAAATTCTAAC 59.306 37.037 9.62 0.00 38.96 2.34
2574 2647 6.701432 TTTCTTCCGAAATTCTAACGTCTC 57.299 37.500 0.00 0.00 34.35 3.36
2581 2654 5.220416 CCGAAATTCTAACGTCTCATGTTCC 60.220 44.000 0.00 0.00 0.00 3.62
2603 2677 3.477210 AACCTTCTTCTTTCAGACGCT 57.523 42.857 0.00 0.00 0.00 5.07
2739 2813 3.405831 CAGATGTTCCAGAGCAACTTCA 58.594 45.455 0.00 0.00 32.76 3.02
2788 2877 5.878332 TCAGCTGTGTACATTAACCAATG 57.122 39.130 14.67 0.00 45.94 2.82
2809 2904 7.255173 CCAATGCTACTACTACTACCACTACTG 60.255 44.444 0.00 0.00 0.00 2.74
2855 2951 3.531538 TGTGTTGAGTTCAGGTCAGTTC 58.468 45.455 0.00 0.00 0.00 3.01
2864 2960 1.412710 TCAGGTCAGTTCAGTCACACC 59.587 52.381 0.00 0.00 0.00 4.16
3007 3111 7.691050 GGTTTATTCGTATGCTTTGTTGTAGTC 59.309 37.037 0.00 0.00 0.00 2.59
3008 3112 7.892778 TTATTCGTATGCTTTGTTGTAGTCA 57.107 32.000 0.00 0.00 0.00 3.41
3012 3116 9.758651 ATTCGTATGCTTTGTTGTAGTCATATA 57.241 29.630 0.00 0.00 0.00 0.86
3019 3123 9.542462 TGCTTTGTTGTAGTCATATATACTTCC 57.458 33.333 0.00 0.00 0.00 3.46
3020 3124 8.700644 GCTTTGTTGTAGTCATATATACTTCCG 58.299 37.037 0.00 0.00 0.00 4.30
3021 3125 8.583810 TTTGTTGTAGTCATATATACTTCCGC 57.416 34.615 0.00 0.00 0.00 5.54
3023 3127 8.625786 TGTTGTAGTCATATATACTTCCGCTA 57.374 34.615 0.00 0.00 0.00 4.26
3030 3134 8.842280 AGTCATATATACTTCCGCTATAAGCTC 58.158 37.037 0.00 0.00 39.60 4.09
3110 3224 5.241506 TCACCTTTTTCTAGCATTTCCACAG 59.758 40.000 0.00 0.00 0.00 3.66
3234 3352 4.428845 CCCTGCTGGCATGTCTTT 57.571 55.556 3.63 0.00 0.00 2.52
3244 3370 2.224744 TGGCATGTCTTTAAGCACTCCA 60.225 45.455 0.00 0.00 0.00 3.86
3245 3371 2.819608 GGCATGTCTTTAAGCACTCCAA 59.180 45.455 0.00 0.00 0.00 3.53
3260 3387 4.943705 GCACTCCAAAAGGTGAGATAATGA 59.056 41.667 0.00 0.00 35.69 2.57
3292 3419 3.540314 AGCTAGAAATCCAGCTGTCTG 57.460 47.619 13.81 5.31 46.21 3.51
3326 3454 1.661509 GCAACCGCTTTTCTGCCAC 60.662 57.895 0.00 0.00 34.30 5.01
3416 3560 6.149474 ACTCCCGATTAAAAACAAGATGACTG 59.851 38.462 0.00 0.00 0.00 3.51
3440 3584 2.689471 TCAATGCCAGGCACATTCATAC 59.311 45.455 19.10 0.00 43.04 2.39
3461 3610 3.545703 CCCAAGTAGAGGGCAATTACAG 58.454 50.000 0.00 0.00 39.96 2.74
3490 3639 9.889128 TTGATAAGATCAGATGTATGACAACAA 57.111 29.630 0.00 0.00 40.94 2.83
3500 3649 7.601886 CAGATGTATGACAACAAAGTTCTCTCT 59.398 37.037 0.00 0.00 32.02 3.10
3518 3667 6.712276 TCTCTCTTTTGATAAAAGGACCCTC 58.288 40.000 12.53 0.00 46.11 4.30
3519 3668 6.502158 TCTCTCTTTTGATAAAAGGACCCTCT 59.498 38.462 12.53 0.00 46.11 3.69
3520 3669 6.476378 TCTCTTTTGATAAAAGGACCCTCTG 58.524 40.000 12.53 0.00 46.11 3.35
3521 3670 5.570320 TCTTTTGATAAAAGGACCCTCTGG 58.430 41.667 12.53 0.00 46.11 3.86
3527 3676 3.680777 AAAAGGACCCTCTGGAAAACA 57.319 42.857 0.00 0.00 34.81 2.83
3531 3680 3.566351 AGGACCCTCTGGAAAACAAAAG 58.434 45.455 0.00 0.00 34.81 2.27
3542 3691 1.336632 AAACAAAAGGGGCAGCAGCA 61.337 50.000 2.65 0.00 44.61 4.41
3543 3692 2.031674 AACAAAAGGGGCAGCAGCAC 62.032 55.000 2.65 0.00 45.89 4.40
3551 3700 3.117171 GCAGCAGCACGGTGAGAG 61.117 66.667 13.29 1.39 46.47 3.20
3562 3711 1.068741 ACGGTGAGAGGTCAAGTCAAC 59.931 52.381 0.00 0.00 33.27 3.18
3571 3720 0.928451 GTCAAGTCAACCGTTTGCGC 60.928 55.000 0.00 0.00 36.67 6.09
3573 3722 3.800323 AAGTCAACCGTTTGCGCGC 62.800 57.895 27.26 27.26 36.67 6.86
3595 3744 1.424493 GCGAGATGCGAAAGGGACAG 61.424 60.000 0.00 0.00 44.57 3.51
3597 3746 0.537188 GAGATGCGAAAGGGACAGGA 59.463 55.000 0.00 0.00 0.00 3.86
3598 3747 0.984230 AGATGCGAAAGGGACAGGAA 59.016 50.000 0.00 0.00 0.00 3.36
3599 3748 1.087501 GATGCGAAAGGGACAGGAAC 58.912 55.000 0.00 0.00 0.00 3.62
3600 3749 0.322546 ATGCGAAAGGGACAGGAACC 60.323 55.000 0.00 0.00 0.00 3.62
3601 3750 1.375326 GCGAAAGGGACAGGAACCT 59.625 57.895 0.00 0.00 39.21 3.50
3603 3752 1.809684 CGAAAGGGACAGGAACCTTC 58.190 55.000 0.00 0.00 45.98 3.46
3604 3753 1.809684 GAAAGGGACAGGAACCTTCG 58.190 55.000 0.00 0.00 45.98 3.79
3605 3754 1.346722 GAAAGGGACAGGAACCTTCGA 59.653 52.381 0.00 0.00 45.98 3.71
3606 3755 1.657804 AAGGGACAGGAACCTTCGAT 58.342 50.000 0.00 0.00 43.38 3.59
3607 3756 0.905357 AGGGACAGGAACCTTCGATG 59.095 55.000 0.00 0.00 31.68 3.84
3608 3757 0.613777 GGGACAGGAACCTTCGATGT 59.386 55.000 0.00 0.00 32.60 3.06
3609 3758 1.003233 GGGACAGGAACCTTCGATGTT 59.997 52.381 0.88 0.88 30.85 2.71
3610 3759 2.552373 GGGACAGGAACCTTCGATGTTT 60.552 50.000 2.78 0.00 30.85 2.83
3611 3760 2.484264 GGACAGGAACCTTCGATGTTTG 59.516 50.000 2.78 1.71 30.85 2.93
3612 3761 3.139077 GACAGGAACCTTCGATGTTTGT 58.861 45.455 2.78 4.43 30.85 2.83
3613 3762 3.139077 ACAGGAACCTTCGATGTTTGTC 58.861 45.455 2.78 0.00 0.00 3.18
3614 3763 2.157668 CAGGAACCTTCGATGTTTGTCG 59.842 50.000 2.78 0.00 42.74 4.35
3622 3771 2.883574 TCGATGTTTGTCGATGGTACC 58.116 47.619 4.43 4.43 44.87 3.34
3623 3772 1.586578 CGATGTTTGTCGATGGTACCG 59.413 52.381 7.57 0.00 44.06 4.02
3624 3773 1.931172 GATGTTTGTCGATGGTACCGG 59.069 52.381 7.57 0.00 0.00 5.28
3625 3774 0.680618 TGTTTGTCGATGGTACCGGT 59.319 50.000 13.98 13.98 0.00 5.28
3626 3775 1.070445 TGTTTGTCGATGGTACCGGTT 59.930 47.619 15.04 0.00 0.00 4.44
3627 3776 2.145536 GTTTGTCGATGGTACCGGTTT 58.854 47.619 15.04 0.00 0.00 3.27
3628 3777 2.083167 TTGTCGATGGTACCGGTTTC 57.917 50.000 15.04 6.67 0.00 2.78
3629 3778 0.967662 TGTCGATGGTACCGGTTTCA 59.032 50.000 15.04 12.60 0.00 2.69
3630 3779 1.551430 TGTCGATGGTACCGGTTTCAT 59.449 47.619 15.04 17.24 0.00 2.57
3631 3780 2.199236 GTCGATGGTACCGGTTTCATC 58.801 52.381 26.71 26.71 34.37 2.92
3632 3781 2.104967 TCGATGGTACCGGTTTCATCT 58.895 47.619 30.06 12.77 35.24 2.90
3633 3782 2.498481 TCGATGGTACCGGTTTCATCTT 59.502 45.455 30.06 10.19 35.24 2.40
3634 3783 2.864343 CGATGGTACCGGTTTCATCTTC 59.136 50.000 30.06 15.82 35.24 2.87
3635 3784 2.773993 TGGTACCGGTTTCATCTTCC 57.226 50.000 15.04 3.75 0.00 3.46
3636 3785 1.279846 TGGTACCGGTTTCATCTTCCC 59.720 52.381 15.04 0.00 0.00 3.97
3637 3786 1.558294 GGTACCGGTTTCATCTTCCCT 59.442 52.381 15.04 0.00 0.00 4.20
3638 3787 2.767960 GGTACCGGTTTCATCTTCCCTA 59.232 50.000 15.04 0.00 0.00 3.53
3639 3788 3.198417 GGTACCGGTTTCATCTTCCCTAA 59.802 47.826 15.04 0.00 0.00 2.69
3640 3789 3.629142 ACCGGTTTCATCTTCCCTAAG 57.371 47.619 0.00 0.00 0.00 2.18
3641 3790 2.289565 CCGGTTTCATCTTCCCTAAGC 58.710 52.381 0.00 0.00 32.36 3.09
3642 3791 2.355716 CCGGTTTCATCTTCCCTAAGCA 60.356 50.000 0.00 0.00 32.36 3.91
3643 3792 3.343617 CGGTTTCATCTTCCCTAAGCAA 58.656 45.455 0.00 0.00 32.36 3.91
3644 3793 3.756434 CGGTTTCATCTTCCCTAAGCAAA 59.244 43.478 0.00 0.00 32.36 3.68
3645 3794 4.217550 CGGTTTCATCTTCCCTAAGCAAAA 59.782 41.667 0.00 0.00 32.36 2.44
3646 3795 5.278758 CGGTTTCATCTTCCCTAAGCAAAAA 60.279 40.000 0.00 0.00 32.36 1.94
3677 3826 2.471370 CCGATGTTTGTCGATGATACCG 59.529 50.000 0.00 0.00 44.06 4.02
3678 3827 2.471370 CGATGTTTGTCGATGATACCGG 59.529 50.000 0.00 0.00 44.06 5.28
3679 3828 3.454375 GATGTTTGTCGATGATACCGGT 58.546 45.455 13.98 13.98 0.00 5.28
3680 3829 3.322211 TGTTTGTCGATGATACCGGTT 57.678 42.857 15.04 0.00 0.00 4.44
3681 3830 3.666274 TGTTTGTCGATGATACCGGTTT 58.334 40.909 15.04 4.10 0.00 3.27
3682 3831 3.680937 TGTTTGTCGATGATACCGGTTTC 59.319 43.478 15.04 16.36 0.00 2.78
3683 3832 3.596310 TTGTCGATGATACCGGTTTCA 57.404 42.857 26.72 26.72 0.00 2.69
3684 3833 3.812156 TGTCGATGATACCGGTTTCAT 57.188 42.857 32.47 32.47 34.69 2.57
3685 3834 3.713288 TGTCGATGATACCGGTTTCATC 58.287 45.455 37.92 37.92 41.50 2.92
3686 3835 3.383505 TGTCGATGATACCGGTTTCATCT 59.616 43.478 40.48 25.55 42.21 2.90
3687 3836 4.142026 TGTCGATGATACCGGTTTCATCTT 60.142 41.667 40.48 25.90 42.21 2.40
3688 3837 4.444720 GTCGATGATACCGGTTTCATCTTC 59.555 45.833 40.48 32.92 42.21 2.87
3689 3838 3.741344 CGATGATACCGGTTTCATCTTCC 59.259 47.826 40.48 27.43 42.21 3.46
3690 3839 3.553828 TGATACCGGTTTCATCTTCCC 57.446 47.619 21.97 0.00 0.00 3.97
3691 3840 3.112263 TGATACCGGTTTCATCTTCCCT 58.888 45.455 21.97 0.00 0.00 4.20
3692 3841 4.291792 TGATACCGGTTTCATCTTCCCTA 58.708 43.478 21.97 0.00 0.00 3.53
3693 3842 4.717778 TGATACCGGTTTCATCTTCCCTAA 59.282 41.667 21.97 0.00 0.00 2.69
3694 3843 3.629142 ACCGGTTTCATCTTCCCTAAG 57.371 47.619 0.00 0.00 0.00 2.18
3695 3844 2.289565 CCGGTTTCATCTTCCCTAAGC 58.710 52.381 0.00 0.00 32.36 3.09
3696 3845 2.355716 CCGGTTTCATCTTCCCTAAGCA 60.356 50.000 0.00 0.00 32.36 3.91
3697 3846 3.343617 CGGTTTCATCTTCCCTAAGCAA 58.656 45.455 0.00 0.00 32.36 3.91
3698 3847 3.756434 CGGTTTCATCTTCCCTAAGCAAA 59.244 43.478 0.00 0.00 32.36 3.68
3699 3848 4.217550 CGGTTTCATCTTCCCTAAGCAAAA 59.782 41.667 0.00 0.00 32.36 2.44
3700 3849 5.278758 CGGTTTCATCTTCCCTAAGCAAAAA 60.279 40.000 0.00 0.00 32.36 1.94
3722 3871 3.391506 AAAAGAGCATGGAAGCAAACC 57.608 42.857 0.00 0.00 36.85 3.27
3723 3872 1.999648 AAGAGCATGGAAGCAAACCA 58.000 45.000 0.00 0.00 41.83 3.67
3724 3873 1.542492 AGAGCATGGAAGCAAACCAG 58.458 50.000 0.00 0.00 40.89 4.00
3725 3874 1.074405 AGAGCATGGAAGCAAACCAGA 59.926 47.619 0.00 0.00 40.89 3.86
3726 3875 1.471684 GAGCATGGAAGCAAACCAGAG 59.528 52.381 0.00 0.00 40.89 3.35
3727 3876 0.108945 GCATGGAAGCAAACCAGAGC 60.109 55.000 0.00 0.00 40.89 4.09
3728 3877 1.250328 CATGGAAGCAAACCAGAGCA 58.750 50.000 0.00 0.00 40.89 4.26
3729 3878 1.822990 CATGGAAGCAAACCAGAGCAT 59.177 47.619 0.00 0.00 40.89 3.79
3730 3879 1.538047 TGGAAGCAAACCAGAGCATC 58.462 50.000 0.00 0.00 33.22 3.91
3731 3880 1.202915 TGGAAGCAAACCAGAGCATCA 60.203 47.619 0.00 0.00 37.82 3.07
3732 3881 2.097825 GGAAGCAAACCAGAGCATCAT 58.902 47.619 0.00 0.00 37.82 2.45
3733 3882 2.494870 GGAAGCAAACCAGAGCATCATT 59.505 45.455 0.00 0.00 37.82 2.57
3734 3883 3.508762 GAAGCAAACCAGAGCATCATTG 58.491 45.455 0.00 0.00 37.82 2.82
3735 3884 2.799017 AGCAAACCAGAGCATCATTGA 58.201 42.857 0.00 0.00 37.82 2.57
3736 3885 3.362706 AGCAAACCAGAGCATCATTGAT 58.637 40.909 0.00 0.00 37.82 2.57
3737 3886 3.767673 AGCAAACCAGAGCATCATTGATT 59.232 39.130 0.00 0.00 37.82 2.57
3738 3887 4.110482 GCAAACCAGAGCATCATTGATTC 58.890 43.478 0.00 0.00 37.82 2.52
3739 3888 4.348656 CAAACCAGAGCATCATTGATTCG 58.651 43.478 0.00 0.00 37.82 3.34
3740 3889 3.272574 ACCAGAGCATCATTGATTCGT 57.727 42.857 0.00 0.00 37.82 3.85
3741 3890 3.614092 ACCAGAGCATCATTGATTCGTT 58.386 40.909 0.00 0.00 37.82 3.85
3742 3891 3.624861 ACCAGAGCATCATTGATTCGTTC 59.375 43.478 0.00 0.00 37.82 3.95
3743 3892 3.003068 CCAGAGCATCATTGATTCGTTCC 59.997 47.826 0.00 0.00 37.82 3.62
3744 3893 3.624410 CAGAGCATCATTGATTCGTTCCA 59.376 43.478 0.00 0.00 37.82 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.026542 TGGCTCTGATCTGCTTTGTCAT 60.027 45.455 0.00 0.00 0.00 3.06
1 2 1.348696 TGGCTCTGATCTGCTTTGTCA 59.651 47.619 0.00 0.00 0.00 3.58
2 3 2.105006 TGGCTCTGATCTGCTTTGTC 57.895 50.000 0.00 0.00 0.00 3.18
3 4 2.574006 TTGGCTCTGATCTGCTTTGT 57.426 45.000 0.00 0.00 0.00 2.83
4 5 3.770666 CAATTGGCTCTGATCTGCTTTG 58.229 45.455 0.00 0.02 0.00 2.77
5 6 2.165845 GCAATTGGCTCTGATCTGCTTT 59.834 45.455 7.72 0.00 40.25 3.51
6 7 1.749634 GCAATTGGCTCTGATCTGCTT 59.250 47.619 7.72 0.00 40.25 3.91
7 8 1.340697 TGCAATTGGCTCTGATCTGCT 60.341 47.619 7.72 0.00 45.15 4.24
8 9 1.100510 TGCAATTGGCTCTGATCTGC 58.899 50.000 7.72 0.00 45.15 4.26
9 10 1.063616 CGTGCAATTGGCTCTGATCTG 59.936 52.381 7.72 0.00 45.15 2.90
10 11 1.065926 TCGTGCAATTGGCTCTGATCT 60.066 47.619 7.72 0.00 45.15 2.75
11 12 1.063174 GTCGTGCAATTGGCTCTGATC 59.937 52.381 7.72 0.00 45.15 2.92
12 13 1.089920 GTCGTGCAATTGGCTCTGAT 58.910 50.000 7.72 0.00 45.15 2.90
13 14 1.291184 CGTCGTGCAATTGGCTCTGA 61.291 55.000 7.72 1.39 45.15 3.27
14 15 1.133253 CGTCGTGCAATTGGCTCTG 59.867 57.895 7.72 0.00 45.15 3.35
15 16 1.005037 TCGTCGTGCAATTGGCTCT 60.005 52.632 7.72 0.00 45.15 4.09
16 17 1.291877 ACTCGTCGTGCAATTGGCTC 61.292 55.000 7.72 0.24 45.15 4.70
17 18 1.291877 GACTCGTCGTGCAATTGGCT 61.292 55.000 7.72 0.00 45.15 4.75
18 19 1.132640 GACTCGTCGTGCAATTGGC 59.867 57.895 7.72 0.15 45.13 4.52
19 20 1.078709 ATGACTCGTCGTGCAATTGG 58.921 50.000 7.72 0.00 0.00 3.16
20 21 2.474526 GGAATGACTCGTCGTGCAATTG 60.475 50.000 0.00 0.00 0.00 2.32
21 22 1.732259 GGAATGACTCGTCGTGCAATT 59.268 47.619 0.00 0.00 0.00 2.32
22 23 1.066858 AGGAATGACTCGTCGTGCAAT 60.067 47.619 0.00 0.00 0.00 3.56
23 24 0.317160 AGGAATGACTCGTCGTGCAA 59.683 50.000 0.00 0.00 0.00 4.08
24 25 1.170442 TAGGAATGACTCGTCGTGCA 58.830 50.000 0.03 0.00 0.00 4.57
25 26 2.493713 ATAGGAATGACTCGTCGTGC 57.506 50.000 0.00 0.00 0.00 5.34
26 27 7.201359 GCATTTATATAGGAATGACTCGTCGTG 60.201 40.741 10.17 0.00 35.74 4.35
27 28 6.807230 GCATTTATATAGGAATGACTCGTCGT 59.193 38.462 10.17 0.00 35.74 4.34
28 29 6.806739 TGCATTTATATAGGAATGACTCGTCG 59.193 38.462 10.17 0.00 35.74 5.12
29 30 8.709386 ATGCATTTATATAGGAATGACTCGTC 57.291 34.615 10.17 0.00 35.74 4.20
38 39 8.739039 GGCACACATAATGCATTTATATAGGAA 58.261 33.333 18.75 0.00 45.27 3.36
39 40 7.339212 GGGCACACATAATGCATTTATATAGGA 59.661 37.037 18.75 0.00 45.27 2.94
40 41 7.483307 GGGCACACATAATGCATTTATATAGG 58.517 38.462 18.75 3.07 45.27 2.57
41 42 7.148255 ACGGGCACACATAATGCATTTATATAG 60.148 37.037 18.75 5.80 45.27 1.31
42 43 6.657117 ACGGGCACACATAATGCATTTATATA 59.343 34.615 18.75 0.00 45.27 0.86
43 44 5.476599 ACGGGCACACATAATGCATTTATAT 59.523 36.000 18.75 1.89 45.27 0.86
44 45 4.824537 ACGGGCACACATAATGCATTTATA 59.175 37.500 18.75 0.00 45.27 0.98
45 46 3.636300 ACGGGCACACATAATGCATTTAT 59.364 39.130 18.75 6.42 45.27 1.40
46 47 3.020274 ACGGGCACACATAATGCATTTA 58.980 40.909 18.75 4.19 45.27 1.40
47 48 1.824230 ACGGGCACACATAATGCATTT 59.176 42.857 18.75 2.72 45.27 2.32
48 49 1.134753 CACGGGCACACATAATGCATT 59.865 47.619 17.56 17.56 45.27 3.56
49 50 0.740149 CACGGGCACACATAATGCAT 59.260 50.000 0.00 0.00 45.27 3.96
50 51 0.322008 TCACGGGCACACATAATGCA 60.322 50.000 0.00 0.00 45.27 3.96
51 52 0.098728 GTCACGGGCACACATAATGC 59.901 55.000 0.00 0.00 42.62 3.56
52 53 1.398041 CTGTCACGGGCACACATAATG 59.602 52.381 0.00 0.00 0.00 1.90
53 54 1.678728 CCTGTCACGGGCACACATAAT 60.679 52.381 0.00 0.00 0.00 1.28
54 55 0.321210 CCTGTCACGGGCACACATAA 60.321 55.000 0.00 0.00 0.00 1.90
55 56 1.188871 TCCTGTCACGGGCACACATA 61.189 55.000 0.00 0.00 0.00 2.29
56 57 2.032528 CCTGTCACGGGCACACAT 59.967 61.111 0.00 0.00 0.00 3.21
57 58 3.157949 TCCTGTCACGGGCACACA 61.158 61.111 0.00 0.00 0.00 3.72
58 59 2.665185 GTCCTGTCACGGGCACAC 60.665 66.667 0.00 0.00 0.00 3.82
59 60 1.188871 TATGTCCTGTCACGGGCACA 61.189 55.000 0.00 4.07 42.31 4.57
60 61 0.178068 ATATGTCCTGTCACGGGCAC 59.822 55.000 0.00 0.00 42.31 5.01
61 62 0.177836 CATATGTCCTGTCACGGGCA 59.822 55.000 0.00 0.00 43.90 5.36
62 63 0.464036 TCATATGTCCTGTCACGGGC 59.536 55.000 0.00 0.00 0.00 6.13
63 64 1.757118 ACTCATATGTCCTGTCACGGG 59.243 52.381 0.00 0.00 0.00 5.28
64 65 2.541794 CGACTCATATGTCCTGTCACGG 60.542 54.545 1.90 0.00 33.70 4.94
65 66 2.354821 TCGACTCATATGTCCTGTCACG 59.645 50.000 1.90 0.00 33.70 4.35
66 67 4.294232 CATCGACTCATATGTCCTGTCAC 58.706 47.826 1.90 0.00 33.70 3.67
67 68 3.243535 GCATCGACTCATATGTCCTGTCA 60.244 47.826 1.90 0.94 33.70 3.58
68 69 3.312828 GCATCGACTCATATGTCCTGTC 58.687 50.000 1.90 6.70 33.70 3.51
69 70 2.036475 GGCATCGACTCATATGTCCTGT 59.964 50.000 1.90 0.00 33.70 4.00
70 71 2.298446 AGGCATCGACTCATATGTCCTG 59.702 50.000 1.90 0.00 32.20 3.86
71 72 2.560542 GAGGCATCGACTCATATGTCCT 59.439 50.000 1.90 0.00 37.69 3.85
72 73 2.297315 TGAGGCATCGACTCATATGTCC 59.703 50.000 1.90 0.00 43.49 4.02
73 74 3.650070 TGAGGCATCGACTCATATGTC 57.350 47.619 1.90 0.00 43.49 3.06
79 80 0.897621 ACATGTGAGGCATCGACTCA 59.102 50.000 0.00 0.00 46.50 3.41
80 81 1.135915 AGACATGTGAGGCATCGACTC 59.864 52.381 1.15 0.00 38.37 3.36
81 82 1.189752 AGACATGTGAGGCATCGACT 58.810 50.000 1.15 0.00 35.19 4.18
82 83 2.015736 AAGACATGTGAGGCATCGAC 57.984 50.000 1.15 0.00 35.19 4.20
83 84 3.384467 TGATAAGACATGTGAGGCATCGA 59.616 43.478 1.15 0.00 35.19 3.59
84 85 3.721035 TGATAAGACATGTGAGGCATCG 58.279 45.455 1.15 0.00 35.19 3.84
85 86 6.148480 GGTTATGATAAGACATGTGAGGCATC 59.852 42.308 1.15 0.00 35.19 3.91
86 87 6.000219 GGTTATGATAAGACATGTGAGGCAT 59.000 40.000 1.15 3.16 38.60 4.40
87 88 5.104569 TGGTTATGATAAGACATGTGAGGCA 60.105 40.000 1.15 0.00 0.00 4.75
88 89 5.368145 TGGTTATGATAAGACATGTGAGGC 58.632 41.667 1.15 0.00 0.00 4.70
89 90 7.500227 ACATTGGTTATGATAAGACATGTGAGG 59.500 37.037 1.15 0.00 37.69 3.86
90 91 8.442632 ACATTGGTTATGATAAGACATGTGAG 57.557 34.615 1.15 0.00 37.69 3.51
91 92 8.806429 AACATTGGTTATGATAAGACATGTGA 57.194 30.769 1.15 0.00 37.69 3.58
92 93 8.676401 TGAACATTGGTTATGATAAGACATGTG 58.324 33.333 1.15 3.98 37.36 3.21
93 94 8.806429 TGAACATTGGTTATGATAAGACATGT 57.194 30.769 0.00 0.00 37.36 3.21
94 95 9.673454 CATGAACATTGGTTATGATAAGACATG 57.327 33.333 0.25 0.00 37.36 3.21
95 96 9.631257 TCATGAACATTGGTTATGATAAGACAT 57.369 29.630 5.13 0.00 37.36 3.06
96 97 8.892723 GTCATGAACATTGGTTATGATAAGACA 58.107 33.333 11.79 0.00 37.36 3.41
97 98 8.892723 TGTCATGAACATTGGTTATGATAAGAC 58.107 33.333 11.79 1.37 37.36 3.01
98 99 9.460019 TTGTCATGAACATTGGTTATGATAAGA 57.540 29.630 11.79 0.00 37.82 2.10
99 100 9.726232 CTTGTCATGAACATTGGTTATGATAAG 57.274 33.333 22.50 22.50 38.27 1.73
100 101 9.460019 TCTTGTCATGAACATTGGTTATGATAA 57.540 29.630 11.79 13.51 37.82 1.75
101 102 8.892723 GTCTTGTCATGAACATTGGTTATGATA 58.107 33.333 11.79 7.06 37.82 2.15
102 103 7.394077 TGTCTTGTCATGAACATTGGTTATGAT 59.606 33.333 11.79 0.00 37.82 2.45
103 104 6.714356 TGTCTTGTCATGAACATTGGTTATGA 59.286 34.615 5.13 5.13 37.82 2.15
104 105 6.912082 TGTCTTGTCATGAACATTGGTTATG 58.088 36.000 0.00 0.13 37.82 1.90
105 106 7.707624 ATGTCTTGTCATGAACATTGGTTAT 57.292 32.000 0.00 0.00 37.82 1.89
106 107 8.806429 ATATGTCTTGTCATGAACATTGGTTA 57.194 30.769 14.30 0.00 37.82 2.85
107 108 7.707624 ATATGTCTTGTCATGAACATTGGTT 57.292 32.000 14.30 0.00 37.82 3.67
108 109 8.843262 CATATATGTCTTGTCATGAACATTGGT 58.157 33.333 14.30 6.10 37.82 3.67
109 110 9.059260 TCATATATGTCTTGTCATGAACATTGG 57.941 33.333 14.30 4.71 37.82 3.16
111 112 9.842775 ACTCATATATGTCTTGTCATGAACATT 57.157 29.630 14.30 6.96 37.82 2.71
112 113 9.842775 AACTCATATATGTCTTGTCATGAACAT 57.157 29.630 12.42 13.73 37.82 2.71
113 114 9.317936 GAACTCATATATGTCTTGTCATGAACA 57.682 33.333 12.42 0.00 35.59 3.18
114 115 9.317936 TGAACTCATATATGTCTTGTCATGAAC 57.682 33.333 12.42 0.00 0.00 3.18
116 117 9.485206 CATGAACTCATATATGTCTTGTCATGA 57.515 33.333 24.19 0.00 34.26 3.07
117 118 9.269453 ACATGAACTCATATATGTCTTGTCATG 57.731 33.333 25.29 25.29 34.26 3.07
118 119 9.486497 GACATGAACTCATATATGTCTTGTCAT 57.514 33.333 26.16 19.25 43.62 3.06
119 120 8.877808 GACATGAACTCATATATGTCTTGTCA 57.122 34.615 26.16 18.39 43.62 3.58
140 141 7.410120 TGTCATGACTAGACATGTAAGACAT 57.590 36.000 26.89 15.26 45.21 3.06
141 142 6.834168 TGTCATGACTAGACATGTAAGACA 57.166 37.500 26.89 21.81 45.21 3.41
142 143 9.239002 GTATTGTCATGACTAGACATGTAAGAC 57.761 37.037 26.89 24.00 44.66 3.01
143 144 8.966868 TGTATTGTCATGACTAGACATGTAAGA 58.033 33.333 26.49 19.41 44.66 2.10
144 145 9.025020 GTGTATTGTCATGACTAGACATGTAAG 57.975 37.037 30.52 1.82 44.66 2.34
145 146 8.527810 TGTGTATTGTCATGACTAGACATGTAA 58.472 33.333 30.52 22.98 44.66 2.41
146 147 8.062065 TGTGTATTGTCATGACTAGACATGTA 57.938 34.615 30.52 20.64 44.66 2.29
147 148 6.935167 TGTGTATTGTCATGACTAGACATGT 58.065 36.000 30.52 15.02 44.66 3.21
148 149 7.707893 TCATGTGTATTGTCATGACTAGACATG 59.292 37.037 33.04 33.04 44.66 3.21
149 150 7.785033 TCATGTGTATTGTCATGACTAGACAT 58.215 34.615 30.52 26.08 44.66 3.06
150 151 7.169158 TCATGTGTATTGTCATGACTAGACA 57.831 36.000 26.49 26.49 43.29 3.41
151 152 7.545615 TGTTCATGTGTATTGTCATGACTAGAC 59.454 37.037 25.55 23.98 46.29 2.59
152 153 7.610865 TGTTCATGTGTATTGTCATGACTAGA 58.389 34.615 25.55 13.73 46.29 2.43
153 154 7.832503 TGTTCATGTGTATTGTCATGACTAG 57.167 36.000 25.55 5.85 46.29 2.57
154 155 8.614469 TTTGTTCATGTGTATTGTCATGACTA 57.386 30.769 25.55 19.23 46.29 2.59
155 156 7.509141 TTTGTTCATGTGTATTGTCATGACT 57.491 32.000 25.55 9.97 46.29 3.41
156 157 8.746922 AATTTGTTCATGTGTATTGTCATGAC 57.253 30.769 19.27 19.27 46.29 3.06
167 168 9.467258 CTCAATGACTTTAATTTGTTCATGTGT 57.533 29.630 0.00 0.00 0.00 3.72
168 169 9.467258 ACTCAATGACTTTAATTTGTTCATGTG 57.533 29.630 0.00 0.00 0.00 3.21
169 170 9.467258 CACTCAATGACTTTAATTTGTTCATGT 57.533 29.630 0.00 0.00 0.00 3.21
170 171 8.430063 GCACTCAATGACTTTAATTTGTTCATG 58.570 33.333 0.00 0.00 0.00 3.07
171 172 8.362639 AGCACTCAATGACTTTAATTTGTTCAT 58.637 29.630 0.00 0.00 0.00 2.57
206 207 4.399004 AGGCAAGACATGTGATCTCTAC 57.601 45.455 1.15 0.00 0.00 2.59
211 212 6.441093 TTGATTAAGGCAAGACATGTGATC 57.559 37.500 1.15 0.00 0.00 2.92
212 213 8.523915 TTATTGATTAAGGCAAGACATGTGAT 57.476 30.769 1.15 0.00 0.00 3.06
225 226 7.087409 TGTCATGCACACTTATTGATTAAGG 57.913 36.000 0.00 0.00 41.46 2.69
227 228 8.236586 GTCTTGTCATGCACACTTATTGATTAA 58.763 33.333 0.00 0.00 33.41 1.40
229 230 6.207221 TGTCTTGTCATGCACACTTATTGATT 59.793 34.615 0.00 0.00 33.41 2.57
241 242 4.080975 TGGACTCATATGTCTTGTCATGCA 60.081 41.667 1.90 0.00 37.16 3.96
242 243 4.445453 TGGACTCATATGTCTTGTCATGC 58.555 43.478 1.90 0.00 37.16 4.06
264 265 2.749280 TGACAAGACATGCGAGACAT 57.251 45.000 0.00 0.00 40.66 3.06
265 266 2.029110 TCATGACAAGACATGCGAGACA 60.029 45.455 7.49 0.00 44.79 3.41
266 267 2.346847 GTCATGACAAGACATGCGAGAC 59.653 50.000 21.07 0.00 44.79 3.36
267 268 2.029110 TGTCATGACAAGACATGCGAGA 60.029 45.455 26.02 0.00 44.79 4.04
268 269 2.340337 TGTCATGACAAGACATGCGAG 58.660 47.619 26.02 0.00 44.79 5.03
269 270 2.453983 TGTCATGACAAGACATGCGA 57.546 45.000 26.02 0.00 44.79 5.10
294 297 6.151691 GTGCTCAATGAGTTTAATGCTTTCA 58.848 36.000 12.29 0.00 31.39 2.69
295 298 5.284660 CGTGCTCAATGAGTTTAATGCTTTC 59.715 40.000 12.29 0.00 31.39 2.62
307 310 1.078201 TGCTACGCGTGCTCAATGAG 61.078 55.000 24.59 9.73 0.00 2.90
316 319 0.663688 AGGTCTAGATGCTACGCGTG 59.336 55.000 24.59 13.17 0.00 5.34
319 322 1.676529 TGTGAGGTCTAGATGCTACGC 59.323 52.381 0.00 0.00 0.00 4.42
368 371 5.619533 GCATTGAGTACCCGTAGTATCTAGC 60.620 48.000 0.00 0.00 32.28 3.42
415 456 8.726068 TGTGCAAAAATGTTTCGAGAGATATAA 58.274 29.630 0.00 0.00 41.60 0.98
418 459 6.552859 TGTGCAAAAATGTTTCGAGAGATA 57.447 33.333 0.00 0.00 41.60 1.98
448 498 3.023832 TGAGAGGATACAGCATTCACGA 58.976 45.455 0.00 0.00 41.41 4.35
457 507 7.979444 TTTTGGTAACTTTGAGAGGATACAG 57.021 36.000 0.00 0.00 36.52 2.74
465 515 8.527810 ACACTTTTGATTTTGGTAACTTTGAGA 58.472 29.630 0.00 0.00 37.61 3.27
480 530 3.214328 AGGCTCGTTGACACTTTTGATT 58.786 40.909 0.00 0.00 0.00 2.57
520 570 5.725110 AGCATATGTTCTGATTTCACGAC 57.275 39.130 4.29 0.00 0.00 4.34
521 571 7.841915 TTTAGCATATGTTCTGATTTCACGA 57.158 32.000 4.29 0.00 0.00 4.35
522 572 8.894409 TTTTTAGCATATGTTCTGATTTCACG 57.106 30.769 4.29 0.00 0.00 4.35
576 626 2.179589 CCGTCGTTTGTACACCGATAG 58.820 52.381 17.01 14.12 32.68 2.08
680 731 1.133216 TGTCATAGACTCGCTCACTGC 59.867 52.381 0.00 0.00 33.15 4.40
681 732 3.626977 GATGTCATAGACTCGCTCACTG 58.373 50.000 0.00 0.00 33.15 3.66
682 733 2.289274 CGATGTCATAGACTCGCTCACT 59.711 50.000 0.00 0.00 33.15 3.41
689 740 1.040646 TGGCCCGATGTCATAGACTC 58.959 55.000 0.00 0.00 33.15 3.36
743 794 2.070028 GAAGAAGGGTTCGCTTCAGTC 58.930 52.381 24.10 18.29 38.27 3.51
894 952 1.002274 GGAGCTGGAAGGAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
895 953 1.306482 TGGAGCTGGAAGGAGGAGG 60.306 63.158 0.00 0.00 0.00 4.30
896 954 0.325110 TCTGGAGCTGGAAGGAGGAG 60.325 60.000 0.00 0.00 0.00 3.69
897 955 0.117140 TTCTGGAGCTGGAAGGAGGA 59.883 55.000 0.00 0.00 0.00 3.71
901 959 4.494091 TCTATTTTCTGGAGCTGGAAGG 57.506 45.455 0.00 0.00 0.00 3.46
928 986 1.606668 CTTTCTCCTCCTCCTCGATCG 59.393 57.143 9.36 9.36 0.00 3.69
929 987 1.339929 GCTTTCTCCTCCTCCTCGATC 59.660 57.143 0.00 0.00 0.00 3.69
930 988 1.342474 TGCTTTCTCCTCCTCCTCGAT 60.342 52.381 0.00 0.00 0.00 3.59
931 989 0.039764 TGCTTTCTCCTCCTCCTCGA 59.960 55.000 0.00 0.00 0.00 4.04
950 1008 5.405269 GTGCAAACAAACAAGTGTTTCTCTT 59.595 36.000 6.45 0.00 46.29 2.85
999 1057 3.869272 CGCTTGTGAGCCGCCATC 61.869 66.667 0.00 0.00 46.42 3.51
1008 1066 3.611674 TCGTGGAGCCGCTTGTGA 61.612 61.111 0.00 0.00 0.00 3.58
1115 1173 1.853319 CACACGACGAACCAAGAGC 59.147 57.895 0.00 0.00 0.00 4.09
1134 1192 0.905357 ACCTCCCTGAATGAACGAGG 59.095 55.000 0.00 0.00 44.74 4.63
1137 1195 2.185004 AACACCTCCCTGAATGAACG 57.815 50.000 0.00 0.00 0.00 3.95
1144 1202 1.067295 ATCAGCAAACACCTCCCTGA 58.933 50.000 0.00 0.00 37.01 3.86
1147 1205 1.177401 GGAATCAGCAAACACCTCCC 58.823 55.000 0.00 0.00 0.00 4.30
1182 1240 1.340697 GGATGACCCTGTAACCCCAAC 60.341 57.143 0.00 0.00 0.00 3.77
1191 1249 2.660064 GCCTCACGGATGACCCTGT 61.660 63.158 0.00 0.00 0.00 4.00
1198 1256 1.820906 CACCATGGCCTCACGGATG 60.821 63.158 13.04 0.00 29.57 3.51
1204 1262 0.394762 GCTTCATCACCATGGCCTCA 60.395 55.000 13.04 0.00 0.00 3.86
1355 1416 3.022401 GCGCGCCATCAAGAAACGA 62.022 57.895 23.24 0.00 0.00 3.85
1356 1417 2.574212 GCGCGCCATCAAGAAACG 60.574 61.111 23.24 0.00 0.00 3.60
1500 1564 3.567797 GGTGAAGATCGGCAGCGC 61.568 66.667 0.00 0.00 0.00 5.92
1845 1909 4.227134 CTCGTAGCTGCCCGGCAT 62.227 66.667 13.86 0.87 38.13 4.40
1853 1917 4.880537 CTGCCGCCCTCGTAGCTG 62.881 72.222 0.00 0.00 0.00 4.24
1936 2000 1.179814 ACAGAGAGGCGTCGGAGTTT 61.180 55.000 0.00 0.00 0.00 2.66
1945 2009 0.108424 CAGGGAAGAACAGAGAGGCG 60.108 60.000 0.00 0.00 0.00 5.52
1973 2042 0.374758 ATAATGAGCACGCGCAGTTG 59.625 50.000 5.73 1.65 42.27 3.16
1997 2066 3.245284 GGTACACTGCATGCGTACAATAG 59.755 47.826 25.70 14.55 36.28 1.73
2000 2069 1.434555 GGTACACTGCATGCGTACAA 58.565 50.000 25.70 5.74 36.28 2.41
2165 2234 2.967076 CCCATTATCGCGCGCAGT 60.967 61.111 32.61 20.83 0.00 4.40
2177 2246 2.824041 GTCATGCCGTCGCCCATT 60.824 61.111 0.00 0.00 0.00 3.16
2354 2426 2.270527 GCCTTCTGGTCCCTGCTC 59.729 66.667 0.00 0.00 35.27 4.26
2356 2428 2.656069 TACGCCTTCTGGTCCCTGC 61.656 63.158 0.00 0.00 35.27 4.85
2362 2434 2.048503 GCACGTACGCCTTCTGGT 60.049 61.111 16.72 0.00 35.27 4.00
2383 2455 4.065281 ACGCCTCCACGTACAGCC 62.065 66.667 0.00 0.00 46.19 4.85
2509 2581 3.129287 CAGAAGGAATTTTGGTCGGATGG 59.871 47.826 0.00 0.00 0.00 3.51
2511 2583 2.755103 GCAGAAGGAATTTTGGTCGGAT 59.245 45.455 0.00 0.00 0.00 4.18
2514 2586 2.162408 GGAGCAGAAGGAATTTTGGTCG 59.838 50.000 5.11 0.00 38.56 4.79
2520 2592 3.795688 TGTCAGGAGCAGAAGGAATTT 57.204 42.857 0.00 0.00 0.00 1.82
2539 2611 4.952262 TCGGAAGAAAATCAGAGCATTG 57.048 40.909 0.00 0.00 37.03 2.82
2558 2631 5.347635 TGGAACATGAGACGTTAGAATTTCG 59.652 40.000 0.00 0.00 0.00 3.46
2560 2633 7.360361 GTTTGGAACATGAGACGTTAGAATTT 58.640 34.615 0.00 0.00 39.30 1.82
2569 2642 3.403038 AGAAGGTTTGGAACATGAGACG 58.597 45.455 0.00 0.00 39.30 4.18
2574 2647 6.039717 TCTGAAAGAAGAAGGTTTGGAACATG 59.960 38.462 0.00 0.00 42.31 3.21
2739 2813 1.140652 GCTCCTCCTGCATCTTTAGCT 59.859 52.381 0.00 0.00 0.00 3.32
2788 2877 6.581712 AGACAGTAGTGGTAGTAGTAGTAGC 58.418 44.000 7.18 7.18 0.00 3.58
2816 2911 9.814899 CTCAACACATTCTGAAATAGAGTAGAT 57.185 33.333 0.00 0.00 36.61 1.98
2817 2912 8.807118 ACTCAACACATTCTGAAATAGAGTAGA 58.193 33.333 0.00 0.00 36.61 2.59
2820 2915 7.933577 TGAACTCAACACATTCTGAAATAGAGT 59.066 33.333 0.00 0.00 36.61 3.24
2821 2916 8.315391 TGAACTCAACACATTCTGAAATAGAG 57.685 34.615 0.00 0.00 36.61 2.43
2826 2921 5.192927 ACCTGAACTCAACACATTCTGAAA 58.807 37.500 0.00 0.00 0.00 2.69
2841 2937 2.766263 TGTGACTGAACTGACCTGAACT 59.234 45.455 0.00 0.00 0.00 3.01
2855 2951 3.131396 GTCTTACACCTTGGTGTGACTG 58.869 50.000 29.38 17.88 39.57 3.51
2864 2960 5.209818 TCACCTAGTTGTCTTACACCTTG 57.790 43.478 0.00 0.00 0.00 3.61
2875 2971 1.542547 CGCCCAAGTTCACCTAGTTGT 60.543 52.381 0.00 0.00 0.00 3.32
2960 3063 3.120649 CCAAAGAATTTCACTCGACCGAC 60.121 47.826 0.00 0.00 35.03 4.79
3020 3124 3.810386 GCCCAACACTTAGAGCTTATAGC 59.190 47.826 0.00 0.00 42.84 2.97
3021 3125 4.051922 CGCCCAACACTTAGAGCTTATAG 58.948 47.826 0.00 0.00 0.00 1.31
3023 3127 2.236395 ACGCCCAACACTTAGAGCTTAT 59.764 45.455 0.00 0.00 0.00 1.73
3110 3224 6.436218 ACTTGGAATTTACAAGACCCATAACC 59.564 38.462 24.88 0.00 46.27 2.85
3218 3336 1.133790 GCTTAAAGACATGCCAGCAGG 59.866 52.381 2.22 2.22 38.23 4.85
3222 3340 2.421424 GGAGTGCTTAAAGACATGCCAG 59.579 50.000 0.00 0.00 0.00 4.85
3231 3349 4.821805 TCTCACCTTTTGGAGTGCTTAAAG 59.178 41.667 0.00 0.00 44.07 1.85
3232 3350 4.787551 TCTCACCTTTTGGAGTGCTTAAA 58.212 39.130 0.00 0.00 44.07 1.52
3233 3351 4.431416 TCTCACCTTTTGGAGTGCTTAA 57.569 40.909 0.00 0.00 44.07 1.85
3234 3352 4.640771 ATCTCACCTTTTGGAGTGCTTA 57.359 40.909 0.00 0.00 44.07 3.09
3245 3371 9.125026 GGTCAATATGTTCATTATCTCACCTTT 57.875 33.333 0.00 0.00 0.00 3.11
3260 3387 6.662755 TGGATTTCTAGCTGGTCAATATGTT 58.337 36.000 0.00 0.00 0.00 2.71
3287 3414 4.536888 TGCCCCCTAAGTTATAAACAGACA 59.463 41.667 0.00 0.00 0.00 3.41
3288 3415 5.106876 TGCCCCCTAAGTTATAAACAGAC 57.893 43.478 0.00 0.00 0.00 3.51
3292 3419 3.628942 CGGTTGCCCCCTAAGTTATAAAC 59.371 47.826 0.00 0.00 0.00 2.01
3326 3454 0.678395 ATCCACATCTAGCTCGCAGG 59.322 55.000 0.00 0.00 0.00 4.85
3391 3535 6.149474 CAGTCATCTTGTTTTTAATCGGGAGT 59.851 38.462 0.00 0.00 0.00 3.85
3392 3536 6.371548 TCAGTCATCTTGTTTTTAATCGGGAG 59.628 38.462 0.00 0.00 0.00 4.30
3416 3560 2.166870 TGAATGTGCCTGGCATTGATTC 59.833 45.455 26.22 26.99 41.91 2.52
3423 3567 0.395586 GGGTATGAATGTGCCTGGCA 60.396 55.000 19.30 19.30 35.60 4.92
3461 3610 9.755804 TTGTCATACATCTGATCTTATCAAGAC 57.244 33.333 0.00 0.00 41.01 3.01
3500 3649 5.592587 TCCAGAGGGTCCTTTTATCAAAA 57.407 39.130 0.00 0.00 34.93 2.44
3518 3667 1.541015 GCTGCCCCTTTTGTTTTCCAG 60.541 52.381 0.00 0.00 0.00 3.86
3519 3668 0.467804 GCTGCCCCTTTTGTTTTCCA 59.532 50.000 0.00 0.00 0.00 3.53
3520 3669 0.467804 TGCTGCCCCTTTTGTTTTCC 59.532 50.000 0.00 0.00 0.00 3.13
3521 3670 1.869774 CTGCTGCCCCTTTTGTTTTC 58.130 50.000 0.00 0.00 0.00 2.29
3527 3676 3.297620 CGTGCTGCTGCCCCTTTT 61.298 61.111 13.47 0.00 38.71 2.27
3542 3691 1.068741 GTTGACTTGACCTCTCACCGT 59.931 52.381 0.00 0.00 0.00 4.83
3543 3692 1.605712 GGTTGACTTGACCTCTCACCG 60.606 57.143 0.00 0.00 34.27 4.94
3551 3700 0.316689 CGCAAACGGTTGACTTGACC 60.317 55.000 19.48 0.00 36.83 4.02
3573 3722 2.233654 CCCTTTCGCATCTCGCTCG 61.234 63.158 0.00 0.00 39.08 5.03
3580 3729 1.087501 GTTCCTGTCCCTTTCGCATC 58.912 55.000 0.00 0.00 0.00 3.91
3586 3735 1.430992 TCGAAGGTTCCTGTCCCTTT 58.569 50.000 0.00 0.00 41.13 3.11
3595 3744 2.875080 CGACAAACATCGAAGGTTCC 57.125 50.000 6.33 0.00 45.13 3.62
3603 3752 1.586578 CGGTACCATCGACAAACATCG 59.413 52.381 13.54 0.00 43.63 3.84
3604 3753 1.931172 CCGGTACCATCGACAAACATC 59.069 52.381 13.54 0.00 0.00 3.06
3605 3754 1.276989 ACCGGTACCATCGACAAACAT 59.723 47.619 4.49 0.00 0.00 2.71
3606 3755 0.680618 ACCGGTACCATCGACAAACA 59.319 50.000 4.49 0.00 0.00 2.83
3607 3756 1.799544 AACCGGTACCATCGACAAAC 58.200 50.000 8.00 0.00 0.00 2.93
3608 3757 2.224233 TGAAACCGGTACCATCGACAAA 60.224 45.455 8.00 0.00 0.00 2.83
3609 3758 1.343789 TGAAACCGGTACCATCGACAA 59.656 47.619 8.00 0.00 0.00 3.18
3610 3759 0.967662 TGAAACCGGTACCATCGACA 59.032 50.000 8.00 3.41 0.00 4.35
3611 3760 2.159142 AGATGAAACCGGTACCATCGAC 60.159 50.000 28.53 15.75 40.06 4.20
3612 3761 2.104967 AGATGAAACCGGTACCATCGA 58.895 47.619 28.53 11.26 40.06 3.59
3613 3762 2.596904 AGATGAAACCGGTACCATCG 57.403 50.000 28.53 0.53 40.06 3.84
3614 3763 3.203716 GGAAGATGAAACCGGTACCATC 58.796 50.000 28.19 28.19 36.56 3.51
3615 3764 2.092592 GGGAAGATGAAACCGGTACCAT 60.093 50.000 18.20 18.20 0.00 3.55
3616 3765 1.279846 GGGAAGATGAAACCGGTACCA 59.720 52.381 8.00 9.72 0.00 3.25
3617 3766 1.558294 AGGGAAGATGAAACCGGTACC 59.442 52.381 8.00 0.16 0.00 3.34
3618 3767 4.439968 CTTAGGGAAGATGAAACCGGTAC 58.560 47.826 8.00 6.09 34.25 3.34
3619 3768 3.118519 GCTTAGGGAAGATGAAACCGGTA 60.119 47.826 8.00 0.00 34.25 4.02
3620 3769 2.355818 GCTTAGGGAAGATGAAACCGGT 60.356 50.000 0.00 0.00 34.25 5.28
3621 3770 2.289565 GCTTAGGGAAGATGAAACCGG 58.710 52.381 0.00 0.00 34.25 5.28
3622 3771 2.985896 TGCTTAGGGAAGATGAAACCG 58.014 47.619 0.00 0.00 34.25 4.44
3623 3772 5.722021 TTTTGCTTAGGGAAGATGAAACC 57.278 39.130 0.00 0.00 34.25 3.27
3650 3799 2.536761 TCGACAAACATCGGAGGTTT 57.463 45.000 14.39 14.39 42.50 3.27
3677 3826 5.722021 TTTTGCTTAGGGAAGATGAAACC 57.278 39.130 0.00 0.00 34.25 3.27
3701 3850 3.134442 TGGTTTGCTTCCATGCTCTTTTT 59.866 39.130 0.00 0.00 0.00 1.94
3702 3851 2.699846 TGGTTTGCTTCCATGCTCTTTT 59.300 40.909 0.00 0.00 0.00 2.27
3703 3852 2.298163 CTGGTTTGCTTCCATGCTCTTT 59.702 45.455 0.00 0.00 34.26 2.52
3704 3853 1.891150 CTGGTTTGCTTCCATGCTCTT 59.109 47.619 0.00 0.00 34.26 2.85
3705 3854 1.074405 TCTGGTTTGCTTCCATGCTCT 59.926 47.619 0.00 0.00 34.26 4.09
3706 3855 1.471684 CTCTGGTTTGCTTCCATGCTC 59.528 52.381 0.00 0.00 34.26 4.26
3707 3856 1.542492 CTCTGGTTTGCTTCCATGCT 58.458 50.000 0.00 0.00 34.26 3.79
3708 3857 0.108945 GCTCTGGTTTGCTTCCATGC 60.109 55.000 0.00 0.00 34.26 4.06
3709 3858 1.250328 TGCTCTGGTTTGCTTCCATG 58.750 50.000 0.00 0.00 34.26 3.66
3710 3859 2.097825 GATGCTCTGGTTTGCTTCCAT 58.902 47.619 0.00 0.00 34.26 3.41
3711 3860 1.202915 TGATGCTCTGGTTTGCTTCCA 60.203 47.619 0.00 0.00 33.98 3.53
3712 3861 1.538047 TGATGCTCTGGTTTGCTTCC 58.462 50.000 0.00 0.00 33.98 3.46
3713 3862 3.192001 TCAATGATGCTCTGGTTTGCTTC 59.808 43.478 0.00 0.00 35.02 3.86
3714 3863 3.159472 TCAATGATGCTCTGGTTTGCTT 58.841 40.909 0.00 0.00 0.00 3.91
3715 3864 2.799017 TCAATGATGCTCTGGTTTGCT 58.201 42.857 0.00 0.00 0.00 3.91
3716 3865 3.795623 ATCAATGATGCTCTGGTTTGC 57.204 42.857 0.00 0.00 0.00 3.68
3717 3866 4.142534 ACGAATCAATGATGCTCTGGTTTG 60.143 41.667 0.00 0.00 0.00 2.93
3718 3867 4.012374 ACGAATCAATGATGCTCTGGTTT 58.988 39.130 0.00 0.00 0.00 3.27
3719 3868 3.614092 ACGAATCAATGATGCTCTGGTT 58.386 40.909 0.00 0.00 0.00 3.67
3720 3869 3.272574 ACGAATCAATGATGCTCTGGT 57.727 42.857 0.00 0.00 0.00 4.00
3721 3870 3.003068 GGAACGAATCAATGATGCTCTGG 59.997 47.826 0.00 0.00 0.00 3.86
3722 3871 3.624410 TGGAACGAATCAATGATGCTCTG 59.376 43.478 0.00 0.00 0.00 3.35
3723 3872 3.877559 TGGAACGAATCAATGATGCTCT 58.122 40.909 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.