>input_sequence_44238
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-----------------ATGGCGGCTCACAAGCGGCTCCACGACGGCTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAG
CGGATGGAGCGGTCGGTCTCCTTCTCCACGTGAGCTTCCTTCCAACCCGCCGGCTCTTGGTTCGTCGTGTGCCTCGTTCA
TTCAGGGAGGTGTTTGCTGATTCCATGGCGTGCGTGTGTGTTGGGGTTACAGGGTCATCCGTGAGGCCATGGTGATGAAG
CAGGTCCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTTCACCAGATTGCTGCTTG
TCTCGCTCGATGCTTGCTCTGTTCTTGGAA---TCGAGTGTTCTGATCGGTTGCTTCGTTTCTTGA---TGGCGCGCGTG
CAGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCGTCGCCGGAGACATCGCCGGC
GGCGGAGCCGCCCGCGTTGAGGCTGGCGTTCCTGTTCCAGCCGGCGCTGCCGATCTTCACCGGCAGCAAGATCGAGGACG
TGCACGGCGAGCCGCTCCAGGTCATCCTCGTCGACGCGGTCACCGGGTCGCCCTGCGGCGCGCTCCCGCAGTTCATGCGC
GTCGAGCTGGTGCCGCTCTTCGGGGACTTCCCGCCGGACGGCCGCGAGGACTGGACGACTGGCGAGTTCGCCCGCGGCGT
CGTCAAGGAGCGCGCGGGGAAGCGCCCGCTCCTCACCGGCGACGTCGGCCTCACCATGCGGGACGGGCGCGCCGTCGTGA
ACGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGCGTGATGCCGGGCAGC
TACGAGGGCGGCAGGGTCGCCGAGGCCATGACCGACGCCTTCAACGTCCGTGATCACCGCGGCGAACGTACGTCGACGCA
AACTCCGACGCCTCTCTGTTCTTCCCTGAACATTC-----TCAACTGCGCGTGCTCATTATCTCTCTATTGTACGCATGC
AGTGTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGGGCCTTCC
ACCGGAAGCTGCGGCAGAACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCACCGTGAGGCCGGAAATACTGCGC
GCGATAATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAAGACGTGCGACGCCGGCGACAA
GGTGTACGCGTACGCCGGG---CACGGCGCCACCGTCTACGTCAACTCCCTCTGCCAGCTGGTCCGGCTCGAGTTCGCCG
GCGTCGAGTGCGCGGCGCAGCAGCTGAGCAGGGACCAGAAGGCGTACGTGCACCGGCTGTACGTGGAGGCGTTCGAGCAG
CGGCACAGCCTCCAGGAGGCCGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAACAGCCTCCCAAT
GCTGCAGAGTAAGCAACACACCATCCGACCAAAATTCCTTCTGCTCCTGACA-ATGCTCTGATTTTCTTCCGAAATTCTA
ACGTCTCATGTTCCAAACCTTCTTC-TTTCAGACGCTGCGCCGGTCGCGCCGCCGCCGCTTCCGGCGACGCCGCTCTGGT
TCCAGGGCAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCTCCGGCGGCCAGGGCAACTTTGGCTTCCAGATGTTC
CAGAGCAACTTCAGCTA---------------A-----------------------------------------------
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>chr3A_1_TraesCS3A01G037700
ATGACAAAGCAGATCAGAGCCAATTGCACGACGAGTCATTCCTATATAAATGCATTATGTGTGCCCGTGACAGGACATAT
GAGTCGATGCCTCACATGTCTTATCATAACCAATGTTCATGACAAGACATATATGAGTTCATGTCTTACATGTCTAGTCA
TGACAATACACATGAACAAATTAAAGTCATTGAGTGCTTATAGCATGTAGAGATCACATGTCTTGCCTTAATCAATAAGT
GTGCATGACAAGACATATGAGTCCATGTCTCGCATGTCTTGTCATGACA--ATATATGAAAGCATTAAACTCATTGAGCA
CGCGTAGCATCTAGACCTCACATGGCTTGCCATGAGTGGTCCATGTGAGGGCTAGATACTACGGGTACTCAATGCTTCAA
TGCTCATAATAAT--------------------------------------ATATTTATATCTCTCGAAACATTTTTGCA
CA---------TTTTTTTCGTGAATGCTGTATCCTCTCAAAGTTACCAAAATCAAAAGTGTCAACGAGCCTCACATGTTT
CACTCGTGAGTCGTGAAATCAGAACATATGCTAAAAAAAATCCGTTTGTTAGCATCTGAATATTGCTATCGGTGTACA-A
ACGACGGCCGCTTGTGCGCCGCACACGCCGAAAGCGTTCGCCGGAGGGCTCCGCCGGCGGCGACGCGCGTTGAGAGGGAC
TTGACCATGCGCAGTGAGCGAGTCTATGACATCGGGCCATTACATCACTCGGGCTCGGCCACTCCGAAGTCCGGACTGAA
GCGAACCCTTCTTCCTCACACCTTCCGGGAACCTTCCCCTCACCTTCCCACCCCCACCGGCATTGCGGC-TGCTATATAA
GCCGGCCAACCCCTCGTCCTCTCGAGGCAAAACACACCCACACATCCACCCTCTCTCCCTCTT------CTTCCTCCTCC
TTCCAGCTCCAGAAAATAGATACGCCGATCGAGGAGGAGGAGAAAGCAAGAGAAACACTTGTTTGTTTGCACTTGAGCAG
CGGCGCCGGCGATCGAGATGGCGGCTCACAAGCGGCTCCACGACGGCTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAG
CGGATGGAGCGGTCGGTCTCCTTCTCCACGTGAGCTTCCTTCCAACCCGCCGGCTCTTGGTTCGTCGTGTGCCTCGTTCA
TTCAGGGAGGTGTTTGCTGATTCCATGGCGTGCGTGTGTGTTGGGGTTACAGGGTCATCCGTGAGGCCATGGTGATGAAG
CAGGTCCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTTCACCAGATTGCTGCTTG
TCTCGCTCGATGCTTGCTCTGTTCTTGGAA---TCGAGTGTTCTGATCGGTTGCTTCGTTTCTTGA---TGGCGCGCGTG
CAGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCGTCGCCGGAGACATCGCCGGC
GGCGGAGCCGCCCGCGTTGAGGCTGGCGTTCCTGTTCCAGCCGGCGCTGCCGATCTTCACCGGCAGCAAGATCGAGGACG
TGCACGGCGAGCCGCTCCAGGTCATCCTCGTCGACGCGGTCACCGGGTCGCCCTGCGGCGCGCTCCCGCAGTTCATGCGC
GTCGAGCTGGTGCCGCTCTTCGGGGACTTCCCGCCGGACGGCCGCGAGGACTGGACGACTGGCGAGTTCGCCCGCGGCGT
CGTCAAGGAGCGCGCGGGGAAGCGCCCGCTCCTCACCGGCGACGTCGGCCTCACCATGCGGGACGGGCGCGCCGTCGTGA
ACGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGCGTGATGCCGGGCAGC
TACGAGGGCGGCAGGGTCGCCGAGGCCATGACCGACGCCTTCAACGTCCGTGATCACCGCGGCGAACGTACGTCGACGCA
AACTCCGACGCCTCTCTGTTCTTCCCTGAACATTC-----TCAACTGCGCGTGCTCATTATCTCTCTATTGTACGCATGC
AGTGTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGGGCCTTCC
ACCGGAAGCTGCGGCAGAACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCACCGTGAGGCCGGAAATACTGCGC
GCGATAATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAAGACGTGCGACGCCGGCGACAA
GGTGTACGCGTACGCCGGG---CACGGCGCCACCGTCTACGTCAACTCCCTCTGCCAGCTGGTCCGGCTCGAGTTCGCCG
GCGTCGAGTGCGCGGCGCAGCAGCTGAGCAGGGACCAGAAGGCGTACGTGCACCGGCTGTACGTGGAGGCGTTCGAGCAG
CGGCACAGCCTCCAGGAGGCCGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAACAGCCTCCCAAT
GCTGCAGAGTAAGCAACACACCATCCGACCAAAATTCCTTCTGCTCCTGACA-ATGCTCTGATTTTCTTCCGAAATTCTA
ACGTCTCATGTTCCAAACCTTCTTC-TTTCAGACGCTGCGCCGGTCGCGCCGCCGCCGCTTCCGGCGACGCCGCTCTGGT
TCCAGGGCAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCTCCGGCGGCCAGGGCAACTTTGGCTTCCAGATGTTC
CAGAGCAACTTCAGCTA---------------AAGATGCAGGAGGAGCAGAGCTTCAGCTGTGTACATTAACCAATGCT-
-----ACTACTACTACCACTACTGTCTATTATCTACTCTATTTCAGAATGTGT-TGAGTTCAGGTCAGTTCAGTCACACC
AAGGTGTAAGACAACTAGGTGAACTTGGGCGGCCCTCGCCGCTCGCCGAGGATGCGCTCAAGCATCCGCGGGCGGCGA--
----CAA-GAGGCGATCGATCGGTCGGTCGAGTGAAATTCTTTGGTTTATTCGTATGCTTTGTTGTA-GTCATATATACT
TCCGCTATAAGCTCTAA----------GTGTTGGGCGTCCATGGTGATGGTGTCGCTTGTAATGTTGGGGGTGGCAACTT
CACCTTTTTCTAGCATTTCCACAGGTTATGGGTCTTGTAAATTCCAAGTCTCAATAAAGGGAACAA-AAACTTGCCTTTT
TGTACAGAACAATCA---TACTAGTTGTCTTTGGTTTCCCAACATTTTTTCATGCCCTGCTGGCATGTCTTT--------
AAGCACTCCAAAAG-GTGAGATAATGAACATATTGACCAGCTAGAAATCCAGCTGTCTGTTTATAACTTAGGGG-GCAAC
CGCTTTTCTGCCACC--------------TGCGAGCTAGATGTGGATGTCGAAGAAGAAATTCAAGATGCATTATAA--A
AATATATGATGAAAACTCCCGATTAAAAACAAGATGACTGAATCAATGCCAGGCACATTCATACCCAAGTAGAGGGCAA-
----TTACAGTCTTGATAAGATCAGATGTATGACAACAAAGTTCTCTCTTTTGATAAAAGGACCCTCTGGAAAACAAAAG
GGGCAGCAGCACGGTGAGAGGTCAAGTCAACCGTTTGCGCGCGAGCGAGATGCGAAAGGGACAGGAACCTTCGATGTTTG
TCGATGGTACCGGTTTCATCTTCCCTAAGCAAAAAAACAAACCTCCGATGTTTGTCGATGATACCGGTTTCATCTTCCCT
AAGCAAAAAAAAAAGAGCATGGAAGCAAACCAGAGCATCATTGATTCGTTCCA
>chr3D_173
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------------TGAACAAATTAAAGTCATTGAGTGCTCATAGCATCTAGAACTCACATGTCTTGTCCTGATCAATAAGT
GGTCATGACAAGACATGTGAGT--------------------CATGATAATATCTACAAAAGAATTGAAGTCAGTGAGTA
CTCGTAGCATCTAGACCTCACATGGCTTGCCATGAGTGGTCCATGTGAGGCCTAAATACCACAGGTACTCAATGCTTCAA
TGCTCTTTTTTTGGAATAGGAGGATTACCCCCGGATTCAATGCTCATAAGAATATCTGAACATCTCGAAACATTTTGGCT
CACTT-----TTTTTTTCCGTGAACGTTGCATCCCCTCAAATTTACCACGAGCAAAAGTGTCAACGAGCCTCACATGTTT
CACTCATGA----TGAAATCCGAGCATATGCTCGAAAACA--CATTTGTTAGCATCTGAATATTGTTACCGGCGTACA-A
ACGACGGCCGCTTGTGCGCCGCACGCACCGAAAGCGTACGCCGGAGGGCTCCGCCGGCGGCGACGCGCGTTGAGAGGGAC
TTGACCATGCATCGTGAGCCAGTCTGTGACATCGGGCCATTACATCACTCGGGCTCGGCCACTCCGAAGTCCGAACTGAA
GCGAAGCCTTCTTCCTCACACCTTCCGGGAACCTTCCCCTCACCTTCCCGCCCCCTCCGGCATTGCGGCGGGCTATATAA
GCCGGCCAACCCCTCGTCCTCTCGAGGCAAAACACACCCACACATCCACCCTCTCTCCCTCTT------CT----CCTTC
TTCCACTTCCAGAAAATATATACGC----CGAGGAGGAGGAGAAAGCGAAAGAAACACCAG------------TGAGTAG
CGGCGCCGGCGATCGACATGGCAGCGCACAAGCGGCTCCACGACGGGTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAG
CGGATGGAGCGGTCGGTCTCGTTCTCCACGTGAGCTTCCTTCCAACCCGCCGCCGCTTGGT----------TCTTGTTCA
TCCATGGAGGTGTTTGCTGATTCCATGGCGTGCTTGTGT-TTGGGGTTGCAGGGTGATCCGGGAGGCCATGGTGATGAAG
CAGGTGCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTCCACCAGATTGCTGCTTG
TCTCGCTCGATGCTTGCTCTGTTCTTGGAA---TCCAGCGTTCTGATCGATTGCTCTGCTTCTTGATGATGGCGCGCGTG
CAGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCCTCGCCGGAGACGCCGCCGGC
GGCGGAGCGGCCCGCGTTGAGGCTGGCGTTCCTCAACCCGCCGATGCTGCCGATCTTCACCGGCAGCAAGATCGAGGACG
TGAACGGCGAGCCCCTCCAGGTCATCCTCGTCGACGCCGACACCGGCTCGCCCCGCGGCGCGCTCCCGCAGTTCATGCGC
GTCGAGCTGGTGCCGCTCTTCGGCGACTTCCCGCCGGACGGCCGCGAGGAGTGGACGGCCGGCGAGTTCGCCCGCGGCGT
CGTCAAGGAGCGCGCGGGGAAGCGCCCGCTCCTCACCGGCGACGTCGGCCTCACCATGCGTGACGGGCGCGCCGTCGTGA
ACGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGCGTGGTGCCGGGAAGC
TACGAGGGCGCCAGGGTCGCCGAGGCCATGACCGAGGCCTTCAACGTCCGCGACCACCGCGGCGAACGTACGTCGACTTG
AACTCCGATCCCTCTCTGTTTTTCCCTGAACATTC-----TGAACTGCGCGTGCTCATTCTGTCTTGA---TACGCATGC
AGTTTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGTGCCTTCC
ACCGGAAGCTGCGGCAGAACGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTCACCGTGAGGCCGGAAATGCTGCGC
GCGATGATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAGGACGTGCGACGCCGGCGACAA
GGTGTACGCGTACGCCGGGCAGCACGGCGCCACCGTCTACGTCAACTCCCTCTGCCAGCTGGTCCGGCTCGAGTTCGCCG
GCGTCGAGTGCGCGGCGCAGCAGCTCACCAGGGCCCAGAAGGCGTACGTGCACCAGCTGTGCGTGGAGGCGTTCGAGCAG
CGGCACAGCCTCCAGGAGGCGGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAGCAGCCTCCCAAT
GCTGCAGAGTAAGCAACACATCCTCTGACCAGAATTCCTTCTGCTCCTGAAA-ATGCTCTGCTTCTCTGAATTCTGACCA
--------------AAACCTTCCTC-TTTCAGACGCAGCGCCGGTCACGCCGCCGCCCCTTCCGGCGACGCCGCTCTGGT
TCCAGGGAAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCTCCGGCGGCCAGGGCAACTTTGGCTTCCACATGTTC
CAGAGCAACTTCGGCTA---------------AAGATGCAGGAGGAGCAGAGTTTCAGCTGTGTACATTAACCAATACT-
-----ACTACTA------------TCTATCTACTC--CTACTTCAGAGTGCGTGTGTGTTCAGGTCAGTTAAGCCACACG
AACGTGTAAGGCAACTAGGTGAACTTGGGCGGCCCTCGCCGCTCGCCGAGCATGTGCTCAAACATCCGCGGGCGGCGA--
----CAAAGAGGCGGTCGATCGATCGAGTGAAAGGAATTCTTTGGTTTATTCGTATGCTTTGTTGTATGTTGTACTTCTG
T------TAAGCTTTAG----------GTGTTCGGCGTCCATGGTGATGGTGCCGCTTGTAATGTTGGGGGTGGCAACTT
CACCTTTTTCTAGCATTTCCCCAAGTTATGGGTCTTGTAAATTCCAAGTCTCAATAAACGGAACAA-AAACTTGCCTTTT
TGTACACAACAATCA---TAC---TTGTCTTTGGTTTCCCAACATTTT--CATGCTCTGGTGGCATGTAC----------
AAGCACTCC--AAG-GTGGGATAATGCACATATTGACCAGCTAGA-----------------------------------
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>chr3B_273
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--------------------------------CATGTCTTGTCATGATAATATATTCAAAAGCATTAAAATCATTGAGTA
CTAGTAGCATCTAGACCTCACATGGCTTGCCATGAGTGGTCCATGTGGGGCCTAGATACTATGAGTACTCAATGCTTCAA
CGCTCATAATAAT--------------------------------------ATATGAACATCTCTCAAAACATGTTTTTT
GGCTCACATGTTTTTTTCCGTGAATGTTGTATCCCCTCAAAGTTACCAAGATCAAAAGTGTCAACGAGCCTCACATGTTT
CACTCGTGA-------AATCAGAACATATGCTCGAG--AATCCATTTGTTAGCATCTGAATATTGTTATCTGTGTACACA
ACGACGGCCGCTTGTGCGCCGGACACACCGAAAGCGTTCGCCGGAGGGATCCGCCGGCGACGACGCGCGTTGAGAGGGAC
TTGACCATGCATCGTGAGCCAGTCTATGACATCGGGCCATTACATCACTCGGGCTCGGGCACTCCG-------AACTGAA
GCAAACCCTTCTTCCTCACACCTTCCCGGAACCTTCCCCTCACCTTCCCGCCCCTTCCGCCATTGCGGC-GGCTATATAA
GCCGGCCGACCCCTCGTCCTCTCGAGGCAAAACACACCCACACATCCACCCTCTCTCCCTCTCTTGCTCCT----TCTTC
TTCCAGCTCCAGAAAATAGATACGC----CGAGGAGGAGGAGAAAGCGAGAGAAACACTTGTTTGTTCGCATTTGAGCAG
CGGCGCCGGCGATCGACATGGCGGCACACAAGCGGCTCCACGACGGCTTCGAGCAGGACCCCGACCAGCCCGAGAAGAAG
CGGATGGAGCGGTCGGTCTCCTTCTCCACGTGAGCTTCCTTCCAGCCCGCCGCCTCTTGGTTCGTCGTGTGTCTTGTTCA
TCCATGGAGCTCTTTGCTGATTCCATGGCGTGCGTGCGT-TTGGGGTTCCAGGGTGATCCGGGAGGCCATGGTGATGAAG
CAGGTGCAGAGTGTGTTCCTGGTGCTGGAGCCTCTCCTGCGCCGAGTGGTAAGCAGAGCCGTCCACCAGATTGCTGCTTG
TCTCGCTCGATGCTTGCTCTGTTCTTGGAAGAATCGAGTGTTCTGATCGGTTGCTCTGTTTCTTGATG---GCGCGCGCG
CAGGTGCAGGAGGAGATCCAGGCGGGGCTGGTGCGCAGCCCGCGGTACATCGAGAGGTCCTCGCCGGAGACGCCGCCGGC
GGCGGAGCGGCCCGCGTGGAGGCTGGCGTTCCTGCGCCCGCCGATGCTACCGATCTTCACCGGCAGCAAGATCGAGGACG
CAAACGGCGAGCCACTCCAGGTCGTCCTCGTCGCCGCGGTCACCGGGTCGGTCTGCGGCGCTCTCCCGCAGTTCATGCGC
GTCGAGCTGGTGCCGCTCTTCGGGGACTTCCCTCCGGACGGCCGCGAGGACTGGACGACCGGCGAGTTCGCCCGGGGCGT
CGTCAAGGAGCGCTCGGGGAAGCGCCCGCTCCTTACCGGCGACGTCGGCCTCACCATGCGCGACGGGCGCGCCGTCGTCA
GCGACCTCCAGTTCACCGACAACTCCTCCTGGGTCCGCTGCCGCAAGTTCCGCATCGGCGCGCGTGTGGTGCCGGGAAGC
TACGAGGGCGGCAGGGTCGCCGAGGCCATGACCGACGCCTTCAACGTCCGCGATCACCGCGGCGAACGTACGTCGACGCG
AACTCCGATGCTCTCCCTCTCTTTTCGCTCAAATTTGACGTGAACTGCGCGTGCTCATTATCTCTGTGCTGTACGCTTGC
AGTGTACCGGAAGCACTACCCGCCGGCGCTCACCGACGACGTGTGGCGGCTGGAGAAGATCGGCAAGGAGGGGGCCTTCC
ACCGGAAGCTGCGGCAGAGCGGCGTGGAGACCGTGCAGGAGTTCGTGCGGATGCTGAACGTGAAGCCGGACGTGCTGCGC
GCGATCATGGGCGACGGCATGACGGACCGCATGTGGGAGGTGACCACGAGCCACGCCAGGACGTGCGACGCCGGCGACAA
GGTGTACGCGTACGCCGGGCAGCACGGCGCCACCGTCTACGTCAACTCCCTCTTCCAGCTGGTCAGGCTCGAGTTCGCCG
GCGTCCAGTGCGCGGCGCAGCACCTCACCAGGGTCCAGAAGGCGTACGTGCAGCAGCTGTACGTGGAGGCGTTCGAGCAG
CGGCACAGCCTCCAGGAGGCCGAGCCCCTGCCCGCCGCCATGCTCCTCCACGCCAGCAGCAGCAGCAACAGCCTCCCAAT
GCTGCAGAGTAAGCAACACGTCCTCTGACCACAATTCCTTCCGCTCCTGAAATATGCTCTGCTTTTCTTCTG-AATTATA
ATGTCTAATGTTCAAAACGTTCTTGTTTTCAGACGCAGCGCCGGTCGCGCCGCCGCCGCTTCCGGCGACGCCGCTCTGGT
TCCAGAGCAACCAGGAGCTGGACCTCCAGATCGTCGACGAGCTCCCCGACCAGAATGGCTGCTTCGGCTTCCAGATGTAC
TGACATGGCAGGCTAAAATGTCATCAAGTATGAAGATGCAGGAGGAGCAGGGCTTGAGCTGTGTACATTAACCAGCACCA
CTACTACTACCACCACCACTACTATCTACGCAAG----------AATGTGTGTCAGTGTTCAGTTCAGTTAGTCTAAGG-
--------------CTAGGTGAACTTGGGCGGCCCTCGCCGCTCGCCGAGCATGTGCTCAAGCATCCGGGGGCGGCGA--
----CAA-GAGGCGATCAATCGATCGGTCGAGTGAAATTCTTTGGTTCATTTGTATGCTTTGTTGTA-GTTTCATTGTCT
T--------CTGCAAAGTTGTAGGCGTGTGTTGGGCGTCCATGGTGATGGTGTCGCTTGTAATGTTGGGGGTGGCAACTT
CACCTTTT-CTAGCATTTCCACAAGTTATGGGTCTTGTAAATTCCAAGTCTCAATAAAGGGAACAC-AAACTTGCCTTTT
TGTACAGAACAATCATACTAC---TTGTCTTTGGTTTCCCAACATTTT--CATGCTCTGGTTGAATGAACAAG-------
----ACTCC--AAG-GTGAGATAATGCAGATATTGACCAGCTAGAAATCGAGC---------------------------
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>chr3B_2722
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--------------------------------------------------------------------------ATGTTC
CAGAGCAACTTCGGCTG----------------AGATGCAGGAGGAGCAAAGTTTCAGCTGTGTACATTAACCAA---T-
-----GCTACTAGTACCACTACCATCTATCTC--------CTTCAGAATGTGTGCGTGTTCAGGTCAGTTAAGCCACAAG
AATGTGTAAGGCAACTAGGTGAACTTGGGCGGCTCTCGCCGCTCGCCGAGCATGTGCTCAAGCATCCACAGGCGGCGA--
----CAA-GAGG----TGATCGATCGGTCGAGTGAAATTCTTTAGTTTATTCGTATGCTTTGTTGTA-GTTTTGTTATCT
TCTCTTCTCCTGCAAAGTTGTAGGTGTGTGTTGGGCGTCCATGGTGATGGTGTCGCTTGTAATGTT-GGGGTGGCAACTT
CACCTTTT-CTAGCATTTCCACAAGTTCTGGGTCTTGTAAATTCCAAGTCTCAATAAAGGGAACAA-AAACTTGCCTTTT
TGTACAGAACAATCATACT------TGCCTTTGGTTTCCCCGCATTTT--CATGCTCTGGTGGCATGCAC----------
AAGCACTCC--AAG-GTGAGATAATGTACATATTGACCAGCTAGAAATCCAGC---------------------------
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>chr3B_2743
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---------------TA---------------AAGGTGCATCAGGAGTAGAGTTTCAGATGTGTACATTAGCCAA---TC
A---TACTACTACCACCACTACTATCTATCTA----TCTACTTCAGAATGTGTGCGTGTTCAGGTCAGTTAAGTCACATG
AAGGTGTAAGGCAACTAGGTGAACTTGGGTGGCCCTCGCCGCTCGCCGAGCATGTGCTCAAGCATCCGCGGGCGACGA--
----CAA-GAGGCGATCGATTGATCGGTCGAGTGAAATTCTTTGGTTTATTCGTATGCTTTGTTGTA-GTTTCGTTATCT
T-----CTCCTGCAAAGTTGTAGGATTGTGTTGGGCGTCCATGGTGATGCTGTCGCTTGTAATGTTGGGGGTGGCAACTT
CACCTTTT-CTAGCATTTCCACAAGTTATGGGTCTTGTAAATTCCAAGTCTCAATAAAGGGAACAACAAACTTGCCTTTT
TGTACAGAACAATCATACT------TGTCTTTGGTTTCCCAGCATTTT--CATCCTCTGGGGGAATGCAC----------
AAGCACTCC--AAG-GTGAGATAATGCAGATACTGACTAGCTAGAAATCAAGCGTTCTATTTATAACTTAGGGGGGCAAC
AACTTTTCTGCCATCAAATGCACGCCACCCGCGACCCAGATGTGGATGTCGAAGAAGAAATTCAAGATGCATTATGA--A
AATATATGATGAAATTTCCCTATTAATAACAAGATGACTAAATCAAAGCCAGGCGCATTCATATCCAAGTAGAGGGAAAT
GGTTTTACAATCTTCATAAGATCAGATGTATAACAACACAGTTCAC-CCTATGATAAAAGCACCCT--------------
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>chr1D_2901
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-----------------------------------TCGCCGCTCTCCGAGCATGTGGTCAAACATCCGCGGCGGCGGCAA
GAGTCAA-GAGG----CGATCGATCGGTCGAGTGAAATTCTTTGGTTTATTCGTATGCTTTGTTGTA-GTTGTACTTAGC
TTT-----------TAA----------GTGTTGGGTGCCCATGGTGATGGTGTCGCTTGTAATGTGGG------------
-------T-CTAGCATTGTGGGTCT---------TTGTAAATTCCAAGTCTCAGTAAAGGGAAC-----ACTTGCCTTTT
TGTACAGAACAATCATTGTGGTC-------TTGGTTTCCCTACACTTT--CATGCTCTGGTGACATGTACCACCTAGATG
AAGCACTCC--AAAAGTGAGATAACGCACATATTGACCAGCTAGAAATCGAGCGTTTTATTTCTAGCTTAGGGA-GCAAC
CGCTTTTCTGCCATCCAATGCACGTCACATGCGAGCTAGATGTGGATGTCGAAGAAGAAATTCAAGATGCCTTATGAAAA
AAAATATGATG-----TCCTGTTTTAAAAAAAGATGATTAAATCAAAGCCAGTCACATTCATATCCAAGTAGAGGGAAAT
GGTTTTACAACCTTGATAAGATCAGATGTATAACA-CACAGTTCTCTCCTTTGATAAAAGGACCCTGCA-AAAACCAAAA
GGGCAGCAGCGTGGTGAGAAGTCAAGTCAAGCGTTTGCGTGGGAGCGAAATGCGGAAGGGACATG---------------
---------------------------------------AACCTCCGATGTTTGTTGATGATACC---------------
-----------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------S-------S----SS------------S-S-S----------
-SS-------------S-----SSSSSSSSSS---------------S--------SS-----------S--------S-
-S------------------------------------------------S-----------------------------
-------------------------------------------------------S--S--------------------S
-----------------S--------S-------S--------------S------------------------------
---------SSSS-------------------SS---------S---------------------S--------------
--------------------------S-----------------------------------------------------
----------SSS------S-----------------------------------------------------S------
-------------------------------------------------S-----S--------------S---------
-----------------------------------------------------------------------SSSS---S-
-------------------------SSSS------------------S-------------------S---S--------
----------------S--------S------------------------------------------------------
----------------------------------------------------S------------------S--S-----
-S--S----------------------------------S--------S------S-----S------------------
-----S--------------------------------------------------------S-----------------
-------------------------------------------------------SS-----------------------
-----------------------------------------------------------S-----------SS-------
--------S-------------------------SS--S----SS-----------------------------------
--S----------S------------------------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------S-------S---
--------------------------------------------------S----------------------------S
--------S--------------------------------S-----------------------S--S-----------
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-------------------------------------------------------------------------S------
-----S----------------------------------------------------S---------------------
--------------------------------------------------------------------------------
-------------------------S-S-----S--------------------S-------------------------
--------------------------------------------------------------------------------
--------------------S-S--S-----S------------------S----------S--------S-S-------
-S----S------S----------------------S-------------------------------------------
--------------------------------------------------------------------------------
------------S---------------------------------------------------------------S---
-----------------------S-----SSS--SS----S---------------S-------------S--------S
----------S---------------------------------------S---S-------------------------
----------------------S-----------------------------------------------SS---S----
--SSS-S------S------------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------------SS------------------------SS-----S---S--------SSSS--------
---------SS---------------S--------------------------SS---S---------------------
-------------S-------------------------------------------------------------S----
--------------SS-----------------------S------S----------------S------------S---
---------S---------------------S------S---------S-----------------SSSS-----S---S
----------SS-------S----------S--------S-S------S-----S--------S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1008
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----------------------------TCGAGGAGGAGGAGAAAGCA--------------------------------
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>reverse_2009
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--------CGCCTCTCTGTTCTTCCCTG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_1343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAGTGGTAAGCAGAGCCGTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_3336
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCTGCTGGCATGTCTTTAAGC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
