Multiple sequence alignment - TraesCS3A01G031000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G031000 chr3A 100.000 3065 0 0 1 3065 16888309 16891373 0.000000e+00 5661.0
1 TraesCS3A01G031000 chr3D 95.229 1530 66 4 840 2365 10220791 10219265 0.000000e+00 2414.0
2 TraesCS3A01G031000 chr3D 87.770 417 41 7 1 416 10223110 10222703 2.140000e-131 479.0
3 TraesCS3A01G031000 chr3D 87.871 404 36 3 2599 3002 10219145 10218755 2.150000e-126 462.0
4 TraesCS3A01G031000 chr3D 89.344 244 19 4 505 744 10222272 10222032 1.790000e-77 300.0
5 TraesCS3A01G031000 chr3D 91.150 113 9 1 2449 2561 10219255 10219144 5.290000e-33 152.0
6 TraesCS3A01G031000 chr3B 93.918 1529 86 4 841 2365 14346712 14345187 0.000000e+00 2302.0
7 TraesCS3A01G031000 chr3B 93.673 1533 86 8 841 2365 27035500 27037029 0.000000e+00 2283.0
8 TraesCS3A01G031000 chr3B 88.555 533 47 5 2471 3003 14345175 14344657 4.310000e-178 634.0
9 TraesCS3A01G031000 chr3B 87.433 557 56 4 2446 3002 27037036 27037578 2.010000e-176 628.0
10 TraesCS3A01G031000 chr3B 91.127 417 33 4 1 416 14349276 14348863 2.060000e-156 562.0
11 TraesCS3A01G031000 chr3B 88.249 417 41 7 1 415 26916374 26916784 2.750000e-135 492.0
12 TraesCS3A01G031000 chr3B 89.418 189 17 3 1 188 14355487 14355301 5.110000e-58 235.0
13 TraesCS3A01G031000 chr3B 92.366 131 6 3 503 629 26916789 26916919 1.880000e-42 183.0
14 TraesCS3A01G031000 chr3B 97.826 92 2 0 414 505 44751044 44750953 3.160000e-35 159.0
15 TraesCS3A01G031000 chr3B 91.667 96 7 1 503 597 14348859 14348764 6.900000e-27 132.0
16 TraesCS3A01G031000 chr1D 78.907 915 180 11 1175 2084 459818515 459817609 2.610000e-170 608.0
17 TraesCS3A01G031000 chr1B 79.686 827 162 6 1288 2111 637478368 637477545 2.630000e-165 592.0
18 TraesCS3A01G031000 chr1B 78.634 908 177 12 1181 2084 637388626 637387732 1.220000e-163 586.0
19 TraesCS3A01G031000 chr1B 92.500 40 3 0 526 565 587182058 587182097 1.190000e-04 58.4
20 TraesCS3A01G031000 chr4B 97.778 90 2 0 414 503 31522726 31522637 4.090000e-34 156.0
21 TraesCS3A01G031000 chr6A 93.333 105 6 1 396 499 144260395 144260291 1.470000e-33 154.0
22 TraesCS3A01G031000 chr6A 94.898 98 4 1 403 500 542602883 542602787 5.290000e-33 152.0
23 TraesCS3A01G031000 chr5B 95.789 95 4 0 405 499 480363622 480363528 1.470000e-33 154.0
24 TraesCS3A01G031000 chr7A 94.845 97 4 1 404 499 20732916 20733012 1.900000e-32 150.0
25 TraesCS3A01G031000 chr4A 96.512 86 3 0 414 499 590089909 590089824 3.190000e-30 143.0
26 TraesCS3A01G031000 chr2B 94.565 92 5 0 408 499 787296498 787296589 3.190000e-30 143.0
27 TraesCS3A01G031000 chr2B 94.565 92 5 0 408 499 787312751 787312842 3.190000e-30 143.0
28 TraesCS3A01G031000 chr1A 91.111 45 3 1 526 569 532271873 532271917 3.300000e-05 60.2
29 TraesCS3A01G031000 chr7B 100.000 28 0 0 526 553 713256031 713256058 6.000000e-03 52.8
30 TraesCS3A01G031000 chr7B 100.000 28 0 0 526 553 713273491 713273518 6.000000e-03 52.8
31 TraesCS3A01G031000 chr6D 100.000 28 0 0 526 553 286784417 286784444 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G031000 chr3A 16888309 16891373 3064 False 5661.0 5661 100.00000 1 3065 1 chr3A.!!$F1 3064
1 TraesCS3A01G031000 chr3D 10218755 10223110 4355 True 761.4 2414 90.27280 1 3002 5 chr3D.!!$R1 3001
2 TraesCS3A01G031000 chr3B 27035500 27037578 2078 False 1455.5 2283 90.55300 841 3002 2 chr3B.!!$F2 2161
3 TraesCS3A01G031000 chr3B 14344657 14349276 4619 True 907.5 2302 91.31675 1 3003 4 chr3B.!!$R3 3002
4 TraesCS3A01G031000 chr3B 26916374 26916919 545 False 337.5 492 90.30750 1 629 2 chr3B.!!$F1 628
5 TraesCS3A01G031000 chr1D 459817609 459818515 906 True 608.0 608 78.90700 1175 2084 1 chr1D.!!$R1 909
6 TraesCS3A01G031000 chr1B 637477545 637478368 823 True 592.0 592 79.68600 1288 2111 1 chr1B.!!$R2 823
7 TraesCS3A01G031000 chr1B 637387732 637388626 894 True 586.0 586 78.63400 1181 2084 1 chr1B.!!$R1 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 2892 1.740025 GCTACAGAGGCATTTCACCAC 59.26 52.381 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 5817 0.098728 CGGCGGCAAATAAGTGGAAG 59.901 55.0 10.53 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 5.938125 ACGGATATATTTGGCAGGTTCATAC 59.062 40.000 0.00 0.00 0.00 2.39
120 122 5.253330 ACATAAGGGTGTTGGTTCATACTG 58.747 41.667 0.00 0.00 0.00 2.74
121 123 3.876309 AAGGGTGTTGGTTCATACTGT 57.124 42.857 0.00 0.00 0.00 3.55
122 124 4.986054 AAGGGTGTTGGTTCATACTGTA 57.014 40.909 0.00 0.00 0.00 2.74
123 125 4.281898 AGGGTGTTGGTTCATACTGTAC 57.718 45.455 0.00 0.00 0.00 2.90
124 126 3.649023 AGGGTGTTGGTTCATACTGTACA 59.351 43.478 0.00 0.00 0.00 2.90
129 131 6.915843 GGTGTTGGTTCATACTGTACAAAAAG 59.084 38.462 0.00 0.00 0.00 2.27
182 187 8.913487 AACATGATTTCATACATGAGCATAGA 57.087 30.769 12.90 0.00 44.28 1.98
232 237 4.202620 TGTGTTTCCATCCCTTTACATCCA 60.203 41.667 0.00 0.00 0.00 3.41
238 243 4.724293 TCCATCCCTTTACATCCATGTACA 59.276 41.667 0.00 0.00 42.48 2.90
278 283 2.863739 CACGATTAGTGTGAAGCTCGA 58.136 47.619 0.00 0.00 45.51 4.04
341 346 9.108284 CAAAATCAACAATGTTTAGAAAGGGTT 57.892 29.630 0.00 0.00 0.00 4.11
344 349 7.595819 TCAACAATGTTTAGAAAGGGTTCAT 57.404 32.000 0.00 0.00 36.09 2.57
430 435 9.856162 TTTTATTTTGTACTCCCTCTGTAAACT 57.144 29.630 0.00 0.00 0.00 2.66
441 446 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
442 447 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
443 448 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
444 449 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
445 450 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
462 467 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
463 468 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
464 469 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
465 470 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
466 471 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
475 480 9.947433 ATACTAAAGTAGTGATCTATACGCTCT 57.053 33.333 0.00 0.00 39.81 4.09
476 481 8.680039 ACTAAAGTAGTGATCTATACGCTCTT 57.320 34.615 0.00 0.00 37.69 2.85
477 482 9.775854 ACTAAAGTAGTGATCTATACGCTCTTA 57.224 33.333 0.00 0.00 37.69 2.10
493 498 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
494 499 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
495 500 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
496 501 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
497 502 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
498 503 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
499 504 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
500 505 9.512588 CTTATATTAGTTTACGGAGGGAGTAGA 57.487 37.037 0.00 0.00 0.00 2.59
501 506 7.757941 ATATTAGTTTACGGAGGGAGTAGAC 57.242 40.000 0.00 0.00 31.68 2.59
559 990 2.644992 CCTTTGGCCTTGTCGCAC 59.355 61.111 3.32 0.00 0.00 5.34
644 2892 1.740025 GCTACAGAGGCATTTCACCAC 59.260 52.381 0.00 0.00 0.00 4.16
654 2902 2.412325 GCATTTCACCACGTTTAGACCG 60.412 50.000 0.00 0.00 0.00 4.79
704 2955 7.092137 TGATTTTCAGAATATGGAGTTGCAG 57.908 36.000 0.00 0.00 0.00 4.41
708 2981 2.357009 CAGAATATGGAGTTGCAGGTGC 59.643 50.000 0.00 0.00 42.50 5.01
728 3001 2.914059 CCCCTTTCCCATAACACGTAG 58.086 52.381 0.00 0.00 0.00 3.51
730 3003 3.451902 CCCCTTTCCCATAACACGTAGTA 59.548 47.826 0.00 0.00 41.61 1.82
769 4148 6.207691 AGCGGAAACATATATTGCTTGTTT 57.792 33.333 1.89 1.89 44.02 2.83
820 4199 9.196139 CTACCATTGTTCCTTTCCCAATATAAA 57.804 33.333 0.00 0.00 0.00 1.40
842 4221 3.417069 TGGTCAACATCCGACTCAAAT 57.583 42.857 0.00 0.00 33.73 2.32
999 4422 2.035066 AGTTGCTGCCTAGTTGCAAAAG 59.965 45.455 0.00 1.41 46.22 2.27
1432 4861 2.088763 CACGTCATGAAGCGCGTCT 61.089 57.895 23.50 7.14 35.25 4.18
1898 5327 1.154225 GTTTGCGCTCCATGTTCCG 60.154 57.895 9.73 0.00 0.00 4.30
1983 5412 2.475466 CGGCCTTCTGCGATGCAAT 61.475 57.895 0.00 0.00 42.61 3.56
2009 5438 3.827898 GAGACTCACGGCGAGGGG 61.828 72.222 16.62 7.92 46.98 4.79
2232 5661 3.430453 TGGATTTCCACCAATGTCTTCC 58.570 45.455 0.00 0.00 42.01 3.46
2235 5664 4.158579 GGATTTCCACCAATGTCTTCCTTC 59.841 45.833 0.00 0.00 35.64 3.46
2243 5672 0.107945 ATGTCTTCCTTCGCCTGCTC 60.108 55.000 0.00 0.00 0.00 4.26
2244 5673 1.807573 GTCTTCCTTCGCCTGCTCG 60.808 63.158 0.00 0.00 0.00 5.03
2245 5674 1.977009 TCTTCCTTCGCCTGCTCGA 60.977 57.895 0.00 0.00 36.60 4.04
2246 5675 1.807573 CTTCCTTCGCCTGCTCGAC 60.808 63.158 0.00 0.00 38.30 4.20
2247 5676 3.296709 TTCCTTCGCCTGCTCGACC 62.297 63.158 0.00 0.00 38.30 4.79
2249 5678 3.764466 CTTCGCCTGCTCGACCCT 61.764 66.667 0.00 0.00 38.30 4.34
2255 5684 2.726351 CCTGCTCGACCCTCCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
2256 5685 3.068691 TGCTCGACCCTCCCTTCG 61.069 66.667 0.00 0.00 36.55 3.79
2258 5687 3.839432 CTCGACCCTCCCTTCGGC 61.839 72.222 0.00 0.00 35.89 5.54
2259 5688 4.689549 TCGACCCTCCCTTCGGCA 62.690 66.667 0.00 0.00 35.89 5.69
2260 5689 3.470888 CGACCCTCCCTTCGGCAT 61.471 66.667 0.00 0.00 0.00 4.40
2261 5690 2.506472 GACCCTCCCTTCGGCATC 59.494 66.667 0.00 0.00 0.00 3.91
2262 5691 2.285368 ACCCTCCCTTCGGCATCA 60.285 61.111 0.00 0.00 0.00 3.07
2263 5692 1.694169 ACCCTCCCTTCGGCATCAT 60.694 57.895 0.00 0.00 0.00 2.45
2276 5705 2.157738 GGCATCATCCTAACCATCAGC 58.842 52.381 0.00 0.00 0.00 4.26
2277 5706 2.157738 GCATCATCCTAACCATCAGCC 58.842 52.381 0.00 0.00 0.00 4.85
2278 5707 2.420642 CATCATCCTAACCATCAGCCG 58.579 52.381 0.00 0.00 0.00 5.52
2279 5708 1.496060 TCATCCTAACCATCAGCCGT 58.504 50.000 0.00 0.00 0.00 5.68
2283 5712 0.249120 CCTAACCATCAGCCGTGTCA 59.751 55.000 0.00 0.00 0.00 3.58
2298 5727 2.263077 GTGTCACTCATGGTCGATGAC 58.737 52.381 6.20 6.20 36.06 3.06
2305 5734 3.055891 ACTCATGGTCGATGACATTGTCA 60.056 43.478 21.05 21.05 46.90 3.58
2319 5750 2.363788 TTGTCATGTAGCCTCGTCAC 57.636 50.000 0.00 0.00 0.00 3.67
2330 5761 1.268234 GCCTCGTCACATAATGCTTGC 60.268 52.381 0.00 0.00 0.00 4.01
2331 5762 1.331756 CCTCGTCACATAATGCTTGCC 59.668 52.381 0.00 0.00 0.00 4.52
2337 5768 2.359848 TCACATAATGCTTGCCTGATGC 59.640 45.455 0.00 0.00 41.77 3.91
2370 5803 2.033448 CCACTGGCGCCCTGTTAA 59.967 61.111 26.77 2.02 33.44 2.01
2371 5804 1.378514 CCACTGGCGCCCTGTTAAT 60.379 57.895 26.77 0.00 33.44 1.40
2372 5805 1.376609 CCACTGGCGCCCTGTTAATC 61.377 60.000 26.77 0.00 33.44 1.75
2373 5806 1.077716 ACTGGCGCCCTGTTAATCC 60.078 57.895 26.77 0.00 31.67 3.01
2374 5807 1.823899 CTGGCGCCCTGTTAATCCC 60.824 63.158 26.77 0.00 0.00 3.85
2375 5808 2.270874 CTGGCGCCCTGTTAATCCCT 62.271 60.000 26.77 0.00 0.00 4.20
2376 5809 1.526225 GGCGCCCTGTTAATCCCTC 60.526 63.158 18.11 0.00 0.00 4.30
2377 5810 1.527370 GCGCCCTGTTAATCCCTCT 59.473 57.895 0.00 0.00 0.00 3.69
2378 5811 0.756903 GCGCCCTGTTAATCCCTCTA 59.243 55.000 0.00 0.00 0.00 2.43
2379 5812 1.140252 GCGCCCTGTTAATCCCTCTAA 59.860 52.381 0.00 0.00 0.00 2.10
2380 5813 2.835027 CGCCCTGTTAATCCCTCTAAC 58.165 52.381 0.00 0.00 0.00 2.34
2381 5814 2.484947 CGCCCTGTTAATCCCTCTAACC 60.485 54.545 0.00 0.00 0.00 2.85
2382 5815 2.778270 GCCCTGTTAATCCCTCTAACCT 59.222 50.000 0.00 0.00 0.00 3.50
2383 5816 3.202373 GCCCTGTTAATCCCTCTAACCTT 59.798 47.826 0.00 0.00 0.00 3.50
2384 5817 4.686396 GCCCTGTTAATCCCTCTAACCTTC 60.686 50.000 0.00 0.00 0.00 3.46
2385 5818 4.722279 CCCTGTTAATCCCTCTAACCTTCT 59.278 45.833 0.00 0.00 0.00 2.85
2386 5819 5.191921 CCCTGTTAATCCCTCTAACCTTCTT 59.808 44.000 0.00 0.00 0.00 2.52
2387 5820 6.350103 CCTGTTAATCCCTCTAACCTTCTTC 58.650 44.000 0.00 0.00 0.00 2.87
2388 5821 6.309389 TGTTAATCCCTCTAACCTTCTTCC 57.691 41.667 0.00 0.00 0.00 3.46
2389 5822 5.788533 TGTTAATCCCTCTAACCTTCTTCCA 59.211 40.000 0.00 0.00 0.00 3.53
2390 5823 4.846168 AATCCCTCTAACCTTCTTCCAC 57.154 45.455 0.00 0.00 0.00 4.02
2391 5824 3.562108 TCCCTCTAACCTTCTTCCACT 57.438 47.619 0.00 0.00 0.00 4.00
2392 5825 3.870559 TCCCTCTAACCTTCTTCCACTT 58.129 45.455 0.00 0.00 0.00 3.16
2393 5826 5.019657 TCCCTCTAACCTTCTTCCACTTA 57.980 43.478 0.00 0.00 0.00 2.24
2394 5827 5.600749 TCCCTCTAACCTTCTTCCACTTAT 58.399 41.667 0.00 0.00 0.00 1.73
2395 5828 6.030082 TCCCTCTAACCTTCTTCCACTTATT 58.970 40.000 0.00 0.00 0.00 1.40
2396 5829 6.504279 TCCCTCTAACCTTCTTCCACTTATTT 59.496 38.462 0.00 0.00 0.00 1.40
2397 5830 6.599638 CCCTCTAACCTTCTTCCACTTATTTG 59.400 42.308 0.00 0.00 0.00 2.32
2398 5831 6.094186 CCTCTAACCTTCTTCCACTTATTTGC 59.906 42.308 0.00 0.00 0.00 3.68
2399 5832 5.944007 TCTAACCTTCTTCCACTTATTTGCC 59.056 40.000 0.00 0.00 0.00 4.52
2400 5833 3.081804 ACCTTCTTCCACTTATTTGCCG 58.918 45.455 0.00 0.00 0.00 5.69
2401 5834 2.159379 CCTTCTTCCACTTATTTGCCGC 60.159 50.000 0.00 0.00 0.00 6.53
2402 5835 1.459450 TCTTCCACTTATTTGCCGCC 58.541 50.000 0.00 0.00 0.00 6.13
2403 5836 0.098728 CTTCCACTTATTTGCCGCCG 59.901 55.000 0.00 0.00 0.00 6.46
2404 5837 1.309499 TTCCACTTATTTGCCGCCGG 61.309 55.000 0.00 0.00 0.00 6.13
2419 5852 4.263572 CGGCACCACTGGAACCCA 62.264 66.667 0.71 0.00 0.00 4.51
2420 5853 2.440599 GGCACCACTGGAACCCAT 59.559 61.111 0.71 0.00 30.82 4.00
2421 5854 1.678970 GGCACCACTGGAACCCATC 60.679 63.158 0.71 0.00 30.82 3.51
2422 5855 1.074775 GCACCACTGGAACCCATCA 59.925 57.895 0.71 0.00 30.82 3.07
2423 5856 0.539438 GCACCACTGGAACCCATCAA 60.539 55.000 0.71 0.00 30.82 2.57
2424 5857 1.247567 CACCACTGGAACCCATCAAC 58.752 55.000 0.71 0.00 30.82 3.18
2425 5858 0.112412 ACCACTGGAACCCATCAACC 59.888 55.000 0.71 0.00 30.82 3.77
2426 5859 0.405585 CCACTGGAACCCATCAACCT 59.594 55.000 0.00 0.00 30.82 3.50
2427 5860 1.614317 CCACTGGAACCCATCAACCTC 60.614 57.143 0.00 0.00 30.82 3.85
2428 5861 0.698818 ACTGGAACCCATCAACCTCC 59.301 55.000 0.00 0.00 30.82 4.30
2429 5862 0.698238 CTGGAACCCATCAACCTCCA 59.302 55.000 0.00 0.00 34.97 3.86
2430 5863 1.285962 CTGGAACCCATCAACCTCCAT 59.714 52.381 0.00 0.00 35.67 3.41
2431 5864 1.284785 TGGAACCCATCAACCTCCATC 59.715 52.381 0.00 0.00 31.19 3.51
2432 5865 1.566231 GGAACCCATCAACCTCCATCT 59.434 52.381 0.00 0.00 0.00 2.90
2433 5866 2.422093 GGAACCCATCAACCTCCATCTC 60.422 54.545 0.00 0.00 0.00 2.75
2434 5867 1.971149 ACCCATCAACCTCCATCTCA 58.029 50.000 0.00 0.00 0.00 3.27
2435 5868 2.496297 ACCCATCAACCTCCATCTCAT 58.504 47.619 0.00 0.00 0.00 2.90
2436 5869 2.854967 ACCCATCAACCTCCATCTCATT 59.145 45.455 0.00 0.00 0.00 2.57
2437 5870 3.117738 ACCCATCAACCTCCATCTCATTC 60.118 47.826 0.00 0.00 0.00 2.67
2438 5871 3.484407 CCATCAACCTCCATCTCATTCC 58.516 50.000 0.00 0.00 0.00 3.01
2439 5872 3.484407 CATCAACCTCCATCTCATTCCC 58.516 50.000 0.00 0.00 0.00 3.97
2440 5873 1.486310 TCAACCTCCATCTCATTCCCG 59.514 52.381 0.00 0.00 0.00 5.14
2441 5874 1.210478 CAACCTCCATCTCATTCCCGT 59.790 52.381 0.00 0.00 0.00 5.28
2442 5875 2.434336 CAACCTCCATCTCATTCCCGTA 59.566 50.000 0.00 0.00 0.00 4.02
2443 5876 2.320781 ACCTCCATCTCATTCCCGTAG 58.679 52.381 0.00 0.00 0.00 3.51
2444 5877 2.320781 CCTCCATCTCATTCCCGTAGT 58.679 52.381 0.00 0.00 0.00 2.73
2447 5880 4.528596 CCTCCATCTCATTCCCGTAGTATT 59.471 45.833 0.00 0.00 0.00 1.89
2457 5890 1.607628 CCCGTAGTATTCACCTCGGAG 59.392 57.143 0.00 0.00 41.14 4.63
2458 5891 1.001597 CCGTAGTATTCACCTCGGAGC 60.002 57.143 0.00 0.00 41.14 4.70
2464 5897 1.557099 ATTCACCTCGGAGCTGTACA 58.443 50.000 0.00 0.00 0.00 2.90
2466 5899 1.215647 CACCTCGGAGCTGTACACC 59.784 63.158 0.00 0.00 0.00 4.16
2468 5901 2.490217 CTCGGAGCTGTACACCCG 59.510 66.667 16.30 16.30 43.02 5.28
2469 5902 3.064987 CTCGGAGCTGTACACCCGG 62.065 68.421 20.01 0.00 42.03 5.73
2477 5930 0.391263 CTGTACACCCGGCCTTCTTC 60.391 60.000 0.00 0.00 0.00 2.87
2480 5933 0.323629 TACACCCGGCCTTCTTCTTG 59.676 55.000 0.00 0.00 0.00 3.02
2487 5940 1.443802 GGCCTTCTTCTTGGACGAAG 58.556 55.000 0.00 6.75 41.32 3.79
2520 5973 3.251571 GAATCACGTTTCTAGGCGACTT 58.748 45.455 0.00 0.00 43.67 3.01
2532 5985 2.423577 AGGCGACTTACCATCAACAAC 58.576 47.619 0.00 0.00 37.44 3.32
2534 5987 2.159627 GGCGACTTACCATCAACAACTG 59.840 50.000 0.00 0.00 0.00 3.16
2554 6007 4.997395 ACTGGGAAATGTACGCATCATATC 59.003 41.667 0.00 0.00 33.50 1.63
2559 6012 6.372659 GGGAAATGTACGCATCATATCTGAAT 59.627 38.462 0.00 0.00 34.37 2.57
2560 6013 7.549134 GGGAAATGTACGCATCATATCTGAATA 59.451 37.037 0.00 0.00 34.37 1.75
2561 6014 8.935844 GGAAATGTACGCATCATATCTGAATAA 58.064 33.333 0.00 0.00 34.37 1.40
2564 6017 9.494271 AATGTACGCATCATATCTGAATAAACT 57.506 29.630 0.00 0.00 34.37 2.66
2565 6018 8.887036 TGTACGCATCATATCTGAATAAACTT 57.113 30.769 0.00 0.00 34.37 2.66
2566 6019 9.974980 TGTACGCATCATATCTGAATAAACTTA 57.025 29.630 0.00 0.00 34.37 2.24
2568 6021 8.023050 ACGCATCATATCTGAATAAACTTAGC 57.977 34.615 0.00 0.00 34.37 3.09
2569 6022 7.657354 ACGCATCATATCTGAATAAACTTAGCA 59.343 33.333 0.00 0.00 34.37 3.49
2570 6023 8.498358 CGCATCATATCTGAATAAACTTAGCAA 58.502 33.333 0.00 0.00 34.37 3.91
2580 6033 9.941664 CTGAATAAACTTAGCAAATGAGTATGG 57.058 33.333 0.00 0.00 0.00 2.74
2581 6034 8.405531 TGAATAAACTTAGCAAATGAGTATGGC 58.594 33.333 0.00 0.00 0.00 4.40
2582 6035 4.882671 AACTTAGCAAATGAGTATGGCG 57.117 40.909 0.00 0.00 0.00 5.69
2583 6036 3.873910 ACTTAGCAAATGAGTATGGCGT 58.126 40.909 0.00 0.00 0.00 5.68
2584 6037 3.871594 ACTTAGCAAATGAGTATGGCGTC 59.128 43.478 0.00 0.00 0.00 5.19
2585 6038 2.698855 AGCAAATGAGTATGGCGTCT 57.301 45.000 0.00 0.00 0.00 4.18
2586 6039 2.555199 AGCAAATGAGTATGGCGTCTC 58.445 47.619 0.00 0.00 0.00 3.36
2587 6040 1.599542 GCAAATGAGTATGGCGTCTCC 59.400 52.381 0.00 0.00 0.00 3.71
2588 6041 2.213499 CAAATGAGTATGGCGTCTCCC 58.787 52.381 0.00 0.00 0.00 4.30
2589 6042 1.496060 AATGAGTATGGCGTCTCCCA 58.504 50.000 0.00 0.00 39.65 4.37
2590 6043 0.753262 ATGAGTATGGCGTCTCCCAC 59.247 55.000 0.00 0.00 37.79 4.61
2591 6044 0.613572 TGAGTATGGCGTCTCCCACA 60.614 55.000 0.00 0.00 37.79 4.17
2592 6045 0.753262 GAGTATGGCGTCTCCCACAT 59.247 55.000 0.00 0.00 37.79 3.21
2593 6046 0.465705 AGTATGGCGTCTCCCACATG 59.534 55.000 0.00 0.00 37.79 3.21
2594 6047 0.464036 GTATGGCGTCTCCCACATGA 59.536 55.000 0.00 0.00 37.79 3.07
2595 6048 1.070758 GTATGGCGTCTCCCACATGAT 59.929 52.381 0.00 0.00 37.79 2.45
2596 6049 1.423584 ATGGCGTCTCCCACATGATA 58.576 50.000 0.00 0.00 37.79 2.15
2597 6050 0.752658 TGGCGTCTCCCACATGATAG 59.247 55.000 0.00 0.00 0.00 2.08
2652 6144 4.873827 TGAGAATATGTTCAAACTACGCCC 59.126 41.667 4.92 0.00 36.79 6.13
2710 6202 7.004555 TGACAACCATGTTTCTAGTAGATGT 57.995 36.000 0.00 0.00 40.74 3.06
2738 6230 3.741075 CGCTGCACAATCCTCCTAACATA 60.741 47.826 0.00 0.00 0.00 2.29
2791 6283 9.168451 CTACTACATACATATGGTCCACTCTAG 57.832 40.741 7.80 0.00 38.00 2.43
2796 6288 5.263968 ACATATGGTCCACTCTAGAAACG 57.736 43.478 7.80 0.00 0.00 3.60
2804 6296 1.728971 CACTCTAGAAACGCTTGCAGG 59.271 52.381 0.00 0.00 0.00 4.85
2808 6300 3.585862 TCTAGAAACGCTTGCAGGTTAG 58.414 45.455 0.00 0.00 0.00 2.34
2852 6344 1.030488 ATCTTCCGCTCGTTCGAGGA 61.030 55.000 20.97 10.85 33.21 3.71
2886 6378 2.101415 GCTGACCCCCAAGATTTTATGC 59.899 50.000 0.00 0.00 0.00 3.14
2888 6380 3.096092 TGACCCCCAAGATTTTATGCAC 58.904 45.455 0.00 0.00 0.00 4.57
2896 6388 5.327091 CCAAGATTTTATGCACGAAGTCTG 58.673 41.667 8.91 5.09 41.61 3.51
2908 6400 2.169769 ACGAAGTCTGACACCCTTCAAA 59.830 45.455 10.88 0.00 29.74 2.69
2911 6403 4.994852 CGAAGTCTGACACCCTTCAAATAA 59.005 41.667 10.88 0.00 35.44 1.40
2925 6417 7.397192 ACCCTTCAAATAATAAACTGCTGTCAT 59.603 33.333 0.00 0.00 0.00 3.06
2927 6419 8.246180 CCTTCAAATAATAAACTGCTGTCATGT 58.754 33.333 0.00 0.00 0.00 3.21
2928 6420 9.282247 CTTCAAATAATAAACTGCTGTCATGTC 57.718 33.333 0.00 0.00 0.00 3.06
2950 6442 2.429250 AGCACCCAAACAACCAAAGTAC 59.571 45.455 0.00 0.00 0.00 2.73
2951 6443 2.482316 GCACCCAAACAACCAAAGTACC 60.482 50.000 0.00 0.00 0.00 3.34
2967 6459 1.282157 GTACCCCTTGCCTCAATCACT 59.718 52.381 0.00 0.00 0.00 3.41
2971 6463 2.954318 CCCCTTGCCTCAATCACTATTG 59.046 50.000 0.00 0.00 43.32 1.90
2984 6476 3.348647 CACTATTGTGACCATCCACCA 57.651 47.619 0.50 0.00 46.55 4.17
2994 6486 1.213678 ACCATCCACCACATCATCCTG 59.786 52.381 0.00 0.00 0.00 3.86
3003 6495 2.355108 CCACATCATCCTGTTCGTTCCT 60.355 50.000 0.00 0.00 0.00 3.36
3004 6496 3.118775 CCACATCATCCTGTTCGTTCCTA 60.119 47.826 0.00 0.00 0.00 2.94
3005 6497 3.865745 CACATCATCCTGTTCGTTCCTAC 59.134 47.826 0.00 0.00 0.00 3.18
3006 6498 3.118738 ACATCATCCTGTTCGTTCCTACC 60.119 47.826 0.00 0.00 0.00 3.18
3007 6499 2.816411 TCATCCTGTTCGTTCCTACCT 58.184 47.619 0.00 0.00 0.00 3.08
3008 6500 3.170717 TCATCCTGTTCGTTCCTACCTT 58.829 45.455 0.00 0.00 0.00 3.50
3009 6501 3.056107 TCATCCTGTTCGTTCCTACCTTG 60.056 47.826 0.00 0.00 0.00 3.61
3010 6502 1.621814 TCCTGTTCGTTCCTACCTTGG 59.378 52.381 0.00 0.00 0.00 3.61
3011 6503 1.338769 CCTGTTCGTTCCTACCTTGGG 60.339 57.143 0.00 0.00 0.00 4.12
3012 6504 0.035739 TGTTCGTTCCTACCTTGGGC 59.964 55.000 0.00 0.00 0.00 5.36
3013 6505 0.035739 GTTCGTTCCTACCTTGGGCA 59.964 55.000 0.00 0.00 0.00 5.36
3014 6506 0.323629 TTCGTTCCTACCTTGGGCAG 59.676 55.000 0.00 0.00 0.00 4.85
3027 6519 3.480133 GGCAGGTGCGTCCCCTAT 61.480 66.667 0.00 0.00 43.26 2.57
3028 6520 2.109181 GCAGGTGCGTCCCCTATC 59.891 66.667 0.00 0.00 36.75 2.08
3029 6521 2.822399 CAGGTGCGTCCCCTATCC 59.178 66.667 0.00 0.00 36.75 2.59
3030 6522 2.063979 CAGGTGCGTCCCCTATCCA 61.064 63.158 0.00 0.00 36.75 3.41
3031 6523 1.762460 AGGTGCGTCCCCTATCCAG 60.762 63.158 0.00 0.00 36.75 3.86
3032 6524 2.808206 GGTGCGTCCCCTATCCAGG 61.808 68.421 0.00 0.00 42.22 4.45
3033 6525 3.161450 TGCGTCCCCTATCCAGGC 61.161 66.667 0.00 0.00 41.08 4.85
3034 6526 3.942439 GCGTCCCCTATCCAGGCC 61.942 72.222 0.00 0.00 41.08 5.19
3035 6527 2.445845 CGTCCCCTATCCAGGCCA 60.446 66.667 5.01 0.00 41.08 5.36
3036 6528 1.843376 CGTCCCCTATCCAGGCCAT 60.843 63.158 5.01 0.00 41.08 4.40
3037 6529 1.831652 CGTCCCCTATCCAGGCCATC 61.832 65.000 5.01 0.00 41.08 3.51
3038 6530 1.151810 TCCCCTATCCAGGCCATCC 60.152 63.158 5.01 0.00 41.08 3.51
3039 6531 2.596851 CCCCTATCCAGGCCATCCG 61.597 68.421 5.01 0.00 41.08 4.18
3040 6532 1.843376 CCCTATCCAGGCCATCCGT 60.843 63.158 5.01 0.00 41.08 4.69
3041 6533 1.418908 CCCTATCCAGGCCATCCGTT 61.419 60.000 5.01 0.00 41.08 4.44
3042 6534 0.035458 CCTATCCAGGCCATCCGTTC 59.965 60.000 5.01 0.00 34.35 3.95
3043 6535 0.319900 CTATCCAGGCCATCCGTTCG 60.320 60.000 5.01 0.00 37.47 3.95
3044 6536 2.377628 TATCCAGGCCATCCGTTCGC 62.378 60.000 5.01 0.00 37.47 4.70
3045 6537 4.473520 CCAGGCCATCCGTTCGCT 62.474 66.667 5.01 0.00 37.47 4.93
3046 6538 2.436646 CAGGCCATCCGTTCGCTT 60.437 61.111 5.01 0.00 37.47 4.68
3047 6539 2.040544 CAGGCCATCCGTTCGCTTT 61.041 57.895 5.01 0.00 37.47 3.51
3048 6540 2.040544 AGGCCATCCGTTCGCTTTG 61.041 57.895 5.01 0.00 37.47 2.77
3049 6541 2.485122 GCCATCCGTTCGCTTTGG 59.515 61.111 0.00 0.00 0.00 3.28
3050 6542 2.332654 GCCATCCGTTCGCTTTGGT 61.333 57.895 0.00 0.00 0.00 3.67
3051 6543 1.794222 CCATCCGTTCGCTTTGGTC 59.206 57.895 0.00 0.00 0.00 4.02
3052 6544 0.953471 CCATCCGTTCGCTTTGGTCA 60.953 55.000 0.00 0.00 0.00 4.02
3053 6545 1.086696 CATCCGTTCGCTTTGGTCAT 58.913 50.000 0.00 0.00 0.00 3.06
3054 6546 1.062587 CATCCGTTCGCTTTGGTCATC 59.937 52.381 0.00 0.00 0.00 2.92
3055 6547 0.672401 TCCGTTCGCTTTGGTCATCC 60.672 55.000 0.00 0.00 0.00 3.51
3056 6548 0.673644 CCGTTCGCTTTGGTCATCCT 60.674 55.000 0.00 0.00 34.23 3.24
3057 6549 0.721718 CGTTCGCTTTGGTCATCCTC 59.278 55.000 0.00 0.00 34.23 3.71
3058 6550 0.721718 GTTCGCTTTGGTCATCCTCG 59.278 55.000 0.00 0.00 34.23 4.63
3059 6551 0.320374 TTCGCTTTGGTCATCCTCGT 59.680 50.000 0.00 0.00 34.23 4.18
3060 6552 0.108804 TCGCTTTGGTCATCCTCGTC 60.109 55.000 0.00 0.00 34.23 4.20
3061 6553 0.389817 CGCTTTGGTCATCCTCGTCA 60.390 55.000 0.00 0.00 34.23 4.35
3062 6554 1.740380 CGCTTTGGTCATCCTCGTCAT 60.740 52.381 0.00 0.00 34.23 3.06
3063 6555 1.936547 GCTTTGGTCATCCTCGTCATC 59.063 52.381 0.00 0.00 34.23 2.92
3064 6556 2.677902 GCTTTGGTCATCCTCGTCATCA 60.678 50.000 0.00 0.00 34.23 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 143 9.995003 ATCATGTTCTCCTAGATATTGTTTCTC 57.005 33.333 0.00 0.00 0.00 2.87
212 217 4.956075 ACATGGATGTAAAGGGATGGAAAC 59.044 41.667 0.00 0.00 39.68 2.78
215 220 4.724293 TGTACATGGATGTAAAGGGATGGA 59.276 41.667 0.00 0.00 44.11 3.41
232 237 9.807649 GGCAGATTAGAAAATTTTGATGTACAT 57.192 29.630 8.43 8.43 0.00 2.29
238 243 7.156876 TCGTGGCAGATTAGAAAATTTTGAT 57.843 32.000 8.47 0.00 0.00 2.57
278 283 5.063944 GTCTCGAACACATGCATTTATCAGT 59.936 40.000 0.00 0.00 0.00 3.41
416 421 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
417 422 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
418 423 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
419 424 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
436 441 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
437 442 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
438 443 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
439 444 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
440 445 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
449 454 9.947433 AGAGCGTATAGATCACTACTTTAGTAT 57.053 33.333 0.00 0.00 37.82 2.12
450 455 9.775854 AAGAGCGTATAGATCACTACTTTAGTA 57.224 33.333 0.00 0.00 37.82 1.82
451 456 8.680039 AAGAGCGTATAGATCACTACTTTAGT 57.320 34.615 0.00 0.00 37.82 2.24
467 472 8.457261 CCTCCGTAAACTAATATAAGAGCGTAT 58.543 37.037 0.00 0.00 0.00 3.06
468 473 7.094634 CCCTCCGTAAACTAATATAAGAGCGTA 60.095 40.741 0.00 0.00 0.00 4.42
469 474 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
470 475 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
471 476 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
472 477 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
473 478 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
474 479 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
475 480 9.289782 GTCTACTCCCTCCGTAAACTAATATAA 57.710 37.037 0.00 0.00 0.00 0.98
476 481 7.604164 CGTCTACTCCCTCCGTAAACTAATATA 59.396 40.741 0.00 0.00 0.00 0.86
477 482 6.429385 CGTCTACTCCCTCCGTAAACTAATAT 59.571 42.308 0.00 0.00 0.00 1.28
478 483 5.760253 CGTCTACTCCCTCCGTAAACTAATA 59.240 44.000 0.00 0.00 0.00 0.98
479 484 4.578105 CGTCTACTCCCTCCGTAAACTAAT 59.422 45.833 0.00 0.00 0.00 1.73
480 485 3.941483 CGTCTACTCCCTCCGTAAACTAA 59.059 47.826 0.00 0.00 0.00 2.24
481 486 3.197766 TCGTCTACTCCCTCCGTAAACTA 59.802 47.826 0.00 0.00 0.00 2.24
482 487 2.026822 TCGTCTACTCCCTCCGTAAACT 60.027 50.000 0.00 0.00 0.00 2.66
483 488 2.354199 CTCGTCTACTCCCTCCGTAAAC 59.646 54.545 0.00 0.00 0.00 2.01
484 489 2.026822 ACTCGTCTACTCCCTCCGTAAA 60.027 50.000 0.00 0.00 0.00 2.01
485 490 1.556911 ACTCGTCTACTCCCTCCGTAA 59.443 52.381 0.00 0.00 0.00 3.18
486 491 1.198713 ACTCGTCTACTCCCTCCGTA 58.801 55.000 0.00 0.00 0.00 4.02
487 492 1.198713 TACTCGTCTACTCCCTCCGT 58.801 55.000 0.00 0.00 0.00 4.69
488 493 2.547299 ATACTCGTCTACTCCCTCCG 57.453 55.000 0.00 0.00 0.00 4.63
489 494 5.595257 AAAAATACTCGTCTACTCCCTCC 57.405 43.478 0.00 0.00 0.00 4.30
490 495 7.201835 CCTTAAAAATACTCGTCTACTCCCTC 58.798 42.308 0.00 0.00 0.00 4.30
491 496 6.097981 CCCTTAAAAATACTCGTCTACTCCCT 59.902 42.308 0.00 0.00 0.00 4.20
492 497 6.127225 ACCCTTAAAAATACTCGTCTACTCCC 60.127 42.308 0.00 0.00 0.00 4.30
493 498 6.871844 ACCCTTAAAAATACTCGTCTACTCC 58.128 40.000 0.00 0.00 0.00 3.85
494 499 9.860898 TTAACCCTTAAAAATACTCGTCTACTC 57.139 33.333 0.00 0.00 0.00 2.59
600 1032 9.897744 AGCACATCAATAAATAATTGTATTCCG 57.102 29.630 0.00 0.00 44.58 4.30
613 2861 4.842574 TGCCTCTGTAGCACATCAATAAA 58.157 39.130 0.00 0.00 34.69 1.40
644 2892 2.726691 CGCTGCCACGGTCTAAACG 61.727 63.158 0.00 0.00 37.36 3.60
654 2902 1.421485 CAAGATCGAACGCTGCCAC 59.579 57.895 0.00 0.00 0.00 5.01
708 2981 2.237893 ACTACGTGTTATGGGAAAGGGG 59.762 50.000 0.00 0.00 0.00 4.79
788 4167 6.184789 GGGAAAGGAACAATGGTAGTTATGA 58.815 40.000 0.00 0.00 0.00 2.15
800 4179 8.442660 ACCATTTTATATTGGGAAAGGAACAA 57.557 30.769 0.00 0.00 37.32 2.83
820 4199 3.417069 TTGAGTCGGATGTTGACCATT 57.583 42.857 0.00 0.00 37.04 3.16
842 4221 1.945394 GCGTCGTACTCCTATTCCTGA 59.055 52.381 0.00 0.00 0.00 3.86
899 4318 4.097589 GGGCGGCTCTCGTTTATAGTATAT 59.902 45.833 9.56 0.00 41.72 0.86
900 4319 3.441572 GGGCGGCTCTCGTTTATAGTATA 59.558 47.826 9.56 0.00 41.72 1.47
999 4422 0.830648 TGACTTCCGACCATCCCATC 59.169 55.000 0.00 0.00 0.00 3.51
1154 4577 2.359975 CCCCTTCACCGACCTTGC 60.360 66.667 0.00 0.00 0.00 4.01
1159 4582 2.046217 GAAGCCCCCTTCACCGAC 60.046 66.667 0.00 0.00 45.44 4.79
1380 4809 0.030235 CGACGAACTCCATGGCGATA 59.970 55.000 9.17 0.00 0.00 2.92
1432 4861 0.391597 GTGTGTCTCCTCCCGAAACA 59.608 55.000 0.00 0.00 0.00 2.83
1625 5054 2.742774 GTGTTCCAATGTGGTTTGAGC 58.257 47.619 0.00 0.00 39.03 4.26
1898 5327 0.246086 CCTAGCATCGGCAGGAGATC 59.754 60.000 0.00 0.00 44.61 2.75
1983 5412 1.000955 GCCGTGAGTCTCTTTTCAGGA 59.999 52.381 0.65 0.00 32.48 3.86
2225 5654 1.293498 GAGCAGGCGAAGGAAGACA 59.707 57.895 0.00 0.00 0.00 3.41
2231 5660 4.821589 GGGTCGAGCAGGCGAAGG 62.822 72.222 17.59 0.00 42.55 3.46
2232 5661 3.708220 GAGGGTCGAGCAGGCGAAG 62.708 68.421 17.59 0.00 42.55 3.79
2253 5682 2.437651 TGATGGTTAGGATGATGCCGAA 59.562 45.455 0.00 0.00 0.00 4.30
2255 5684 2.420642 CTGATGGTTAGGATGATGCCG 58.579 52.381 0.00 0.00 0.00 5.69
2256 5685 2.157738 GCTGATGGTTAGGATGATGCC 58.842 52.381 0.00 0.00 0.00 4.40
2258 5687 2.224378 ACGGCTGATGGTTAGGATGATG 60.224 50.000 0.00 0.00 0.00 3.07
2259 5688 2.050144 ACGGCTGATGGTTAGGATGAT 58.950 47.619 0.00 0.00 0.00 2.45
2260 5689 1.138859 CACGGCTGATGGTTAGGATGA 59.861 52.381 0.00 0.00 0.00 2.92
2261 5690 1.134401 ACACGGCTGATGGTTAGGATG 60.134 52.381 0.00 0.00 0.00 3.51
2262 5691 1.139058 GACACGGCTGATGGTTAGGAT 59.861 52.381 0.00 0.00 0.00 3.24
2263 5692 0.535335 GACACGGCTGATGGTTAGGA 59.465 55.000 0.00 0.00 0.00 2.94
2276 5705 0.173481 ATCGACCATGAGTGACACGG 59.827 55.000 0.00 0.00 37.90 4.94
2277 5706 1.135402 TCATCGACCATGAGTGACACG 60.135 52.381 0.00 0.00 36.51 4.49
2278 5707 2.263077 GTCATCGACCATGAGTGACAC 58.737 52.381 7.92 0.00 42.55 3.67
2279 5708 1.892474 TGTCATCGACCATGAGTGACA 59.108 47.619 10.80 10.80 42.55 3.58
2283 5712 3.055891 TGACAATGTCATCGACCATGAGT 60.056 43.478 12.63 0.00 42.55 3.41
2298 5727 2.604914 GTGACGAGGCTACATGACAATG 59.395 50.000 0.00 0.00 39.89 2.82
2305 5734 3.070159 AGCATTATGTGACGAGGCTACAT 59.930 43.478 5.97 5.97 38.48 2.29
2309 5740 2.283298 CAAGCATTATGTGACGAGGCT 58.717 47.619 0.00 0.00 0.00 4.58
2319 5750 1.929038 GCGCATCAGGCAAGCATTATG 60.929 52.381 0.30 0.00 45.17 1.90
2330 5761 1.670406 GCATAGGAGGCGCATCAGG 60.670 63.158 24.79 7.06 0.00 3.86
2331 5762 1.670406 GGCATAGGAGGCGCATCAG 60.670 63.158 24.79 11.18 0.00 2.90
2361 5794 2.778270 AGGTTAGAGGGATTAACAGGGC 59.222 50.000 0.00 0.00 33.66 5.19
2365 5798 5.788533 TGGAAGAAGGTTAGAGGGATTAACA 59.211 40.000 0.00 0.00 33.66 2.41
2366 5799 6.070136 AGTGGAAGAAGGTTAGAGGGATTAAC 60.070 42.308 0.00 0.00 0.00 2.01
2367 5800 6.030082 AGTGGAAGAAGGTTAGAGGGATTAA 58.970 40.000 0.00 0.00 0.00 1.40
2368 5801 5.600749 AGTGGAAGAAGGTTAGAGGGATTA 58.399 41.667 0.00 0.00 0.00 1.75
2370 5803 4.081695 AGTGGAAGAAGGTTAGAGGGAT 57.918 45.455 0.00 0.00 0.00 3.85
2371 5804 3.562108 AGTGGAAGAAGGTTAGAGGGA 57.438 47.619 0.00 0.00 0.00 4.20
2372 5805 5.959583 ATAAGTGGAAGAAGGTTAGAGGG 57.040 43.478 0.00 0.00 0.00 4.30
2373 5806 6.094186 GCAAATAAGTGGAAGAAGGTTAGAGG 59.906 42.308 0.00 0.00 0.00 3.69
2374 5807 6.094186 GGCAAATAAGTGGAAGAAGGTTAGAG 59.906 42.308 0.00 0.00 0.00 2.43
2375 5808 5.944007 GGCAAATAAGTGGAAGAAGGTTAGA 59.056 40.000 0.00 0.00 0.00 2.10
2376 5809 5.163754 CGGCAAATAAGTGGAAGAAGGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
2377 5810 4.698304 CGGCAAATAAGTGGAAGAAGGTTA 59.302 41.667 0.00 0.00 0.00 2.85
2378 5811 3.506067 CGGCAAATAAGTGGAAGAAGGTT 59.494 43.478 0.00 0.00 0.00 3.50
2379 5812 3.081804 CGGCAAATAAGTGGAAGAAGGT 58.918 45.455 0.00 0.00 0.00 3.50
2380 5813 2.159379 GCGGCAAATAAGTGGAAGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
2381 5814 2.159379 GGCGGCAAATAAGTGGAAGAAG 60.159 50.000 3.07 0.00 0.00 2.85
2382 5815 1.816224 GGCGGCAAATAAGTGGAAGAA 59.184 47.619 3.07 0.00 0.00 2.52
2383 5816 1.459450 GGCGGCAAATAAGTGGAAGA 58.541 50.000 3.07 0.00 0.00 2.87
2384 5817 0.098728 CGGCGGCAAATAAGTGGAAG 59.901 55.000 10.53 0.00 0.00 3.46
2385 5818 1.309499 CCGGCGGCAAATAAGTGGAA 61.309 55.000 15.42 0.00 0.00 3.53
2386 5819 1.747367 CCGGCGGCAAATAAGTGGA 60.747 57.895 15.42 0.00 0.00 4.02
2387 5820 2.798009 CCGGCGGCAAATAAGTGG 59.202 61.111 15.42 0.00 0.00 4.00
2402 5835 3.567579 ATGGGTTCCAGTGGTGCCG 62.568 63.158 9.54 0.00 36.75 5.69
2403 5836 1.678970 GATGGGTTCCAGTGGTGCC 60.679 63.158 9.54 12.20 36.75 5.01
2404 5837 0.539438 TTGATGGGTTCCAGTGGTGC 60.539 55.000 9.54 3.09 36.75 5.01
2405 5838 1.247567 GTTGATGGGTTCCAGTGGTG 58.752 55.000 9.54 0.00 36.75 4.17
2406 5839 0.112412 GGTTGATGGGTTCCAGTGGT 59.888 55.000 9.54 0.00 36.75 4.16
2407 5840 0.405585 AGGTTGATGGGTTCCAGTGG 59.594 55.000 1.40 1.40 36.75 4.00
2408 5841 1.614317 GGAGGTTGATGGGTTCCAGTG 60.614 57.143 0.00 0.00 36.75 3.66
2409 5842 0.698818 GGAGGTTGATGGGTTCCAGT 59.301 55.000 0.00 0.00 36.75 4.00
2410 5843 0.698238 TGGAGGTTGATGGGTTCCAG 59.302 55.000 0.00 0.00 36.75 3.86
2411 5844 1.284785 GATGGAGGTTGATGGGTTCCA 59.715 52.381 0.00 0.00 41.75 3.53
2412 5845 1.566231 AGATGGAGGTTGATGGGTTCC 59.434 52.381 0.00 0.00 0.00 3.62
2413 5846 2.239654 TGAGATGGAGGTTGATGGGTTC 59.760 50.000 0.00 0.00 0.00 3.62
2414 5847 2.278245 TGAGATGGAGGTTGATGGGTT 58.722 47.619 0.00 0.00 0.00 4.11
2415 5848 1.971149 TGAGATGGAGGTTGATGGGT 58.029 50.000 0.00 0.00 0.00 4.51
2416 5849 3.484407 GAATGAGATGGAGGTTGATGGG 58.516 50.000 0.00 0.00 0.00 4.00
2417 5850 3.484407 GGAATGAGATGGAGGTTGATGG 58.516 50.000 0.00 0.00 0.00 3.51
2418 5851 3.484407 GGGAATGAGATGGAGGTTGATG 58.516 50.000 0.00 0.00 0.00 3.07
2419 5852 2.105477 CGGGAATGAGATGGAGGTTGAT 59.895 50.000 0.00 0.00 0.00 2.57
2420 5853 1.486310 CGGGAATGAGATGGAGGTTGA 59.514 52.381 0.00 0.00 0.00 3.18
2421 5854 1.210478 ACGGGAATGAGATGGAGGTTG 59.790 52.381 0.00 0.00 0.00 3.77
2422 5855 1.584724 ACGGGAATGAGATGGAGGTT 58.415 50.000 0.00 0.00 0.00 3.50
2423 5856 2.320781 CTACGGGAATGAGATGGAGGT 58.679 52.381 0.00 0.00 0.00 3.85
2424 5857 2.320781 ACTACGGGAATGAGATGGAGG 58.679 52.381 0.00 0.00 0.00 4.30
2425 5858 5.243954 TGAATACTACGGGAATGAGATGGAG 59.756 44.000 0.00 0.00 0.00 3.86
2426 5859 5.010719 GTGAATACTACGGGAATGAGATGGA 59.989 44.000 0.00 0.00 0.00 3.41
2427 5860 5.230942 GTGAATACTACGGGAATGAGATGG 58.769 45.833 0.00 0.00 0.00 3.51
2428 5861 5.011125 AGGTGAATACTACGGGAATGAGATG 59.989 44.000 0.00 0.00 0.00 2.90
2429 5862 5.148502 AGGTGAATACTACGGGAATGAGAT 58.851 41.667 0.00 0.00 0.00 2.75
2430 5863 4.543689 AGGTGAATACTACGGGAATGAGA 58.456 43.478 0.00 0.00 0.00 3.27
2431 5864 4.556898 CGAGGTGAATACTACGGGAATGAG 60.557 50.000 0.00 0.00 0.00 2.90
2432 5865 3.317149 CGAGGTGAATACTACGGGAATGA 59.683 47.826 0.00 0.00 0.00 2.57
2433 5866 3.552273 CCGAGGTGAATACTACGGGAATG 60.552 52.174 0.00 0.00 39.62 2.67
2434 5867 2.626743 CCGAGGTGAATACTACGGGAAT 59.373 50.000 0.00 0.00 39.62 3.01
2435 5868 2.026641 CCGAGGTGAATACTACGGGAA 58.973 52.381 0.00 0.00 39.62 3.97
2436 5869 1.212688 TCCGAGGTGAATACTACGGGA 59.787 52.381 0.00 0.00 41.65 5.14
2437 5870 1.607628 CTCCGAGGTGAATACTACGGG 59.392 57.143 0.00 0.00 41.65 5.28
2438 5871 1.001597 GCTCCGAGGTGAATACTACGG 60.002 57.143 0.00 0.00 42.18 4.02
2439 5872 1.948145 AGCTCCGAGGTGAATACTACG 59.052 52.381 0.00 0.00 0.00 3.51
2440 5873 2.688958 ACAGCTCCGAGGTGAATACTAC 59.311 50.000 29.66 0.00 45.98 2.73
2441 5874 3.014304 ACAGCTCCGAGGTGAATACTA 57.986 47.619 29.66 0.00 45.98 1.82
2442 5875 1.853963 ACAGCTCCGAGGTGAATACT 58.146 50.000 29.66 8.05 45.98 2.12
2443 5876 2.426024 TGTACAGCTCCGAGGTGAATAC 59.574 50.000 29.66 22.03 45.98 1.89
2444 5877 2.426024 GTGTACAGCTCCGAGGTGAATA 59.574 50.000 29.66 12.93 45.98 1.75
2447 5880 1.248785 GGTGTACAGCTCCGAGGTGA 61.249 60.000 29.66 13.43 45.98 4.02
2457 5890 2.436115 GAAGGCCGGGTGTACAGC 60.436 66.667 16.75 16.75 0.00 4.40
2458 5891 0.391263 GAAGAAGGCCGGGTGTACAG 60.391 60.000 2.18 0.00 0.00 2.74
2464 5897 1.846124 TCCAAGAAGAAGGCCGGGT 60.846 57.895 2.18 0.00 0.00 5.28
2466 5899 1.741770 CGTCCAAGAAGAAGGCCGG 60.742 63.158 0.00 0.00 0.00 6.13
2468 5901 1.270893 ACTTCGTCCAAGAAGAAGGCC 60.271 52.381 19.61 0.00 46.74 5.19
2469 5902 2.070028 GACTTCGTCCAAGAAGAAGGC 58.930 52.381 19.61 15.18 46.74 4.35
2477 5930 1.879380 TGGCATTTGACTTCGTCCAAG 59.121 47.619 0.00 0.00 38.21 3.61
2480 5933 2.083774 TCATGGCATTTGACTTCGTCC 58.916 47.619 0.00 0.00 0.00 4.79
2487 5940 3.492421 ACGTGATTCATGGCATTTGAC 57.508 42.857 10.52 0.00 0.00 3.18
2520 5973 4.735369 ACATTTCCCAGTTGTTGATGGTA 58.265 39.130 0.00 0.00 34.58 3.25
2532 5985 5.121298 CAGATATGATGCGTACATTTCCCAG 59.879 44.000 0.00 0.00 36.35 4.45
2534 5987 5.237815 TCAGATATGATGCGTACATTTCCC 58.762 41.667 0.00 0.00 36.35 3.97
2554 6007 9.941664 CCATACTCATTTGCTAAGTTTATTCAG 57.058 33.333 0.00 0.00 0.00 3.02
2559 6012 5.878116 ACGCCATACTCATTTGCTAAGTTTA 59.122 36.000 0.00 0.00 0.00 2.01
2560 6013 4.700213 ACGCCATACTCATTTGCTAAGTTT 59.300 37.500 0.00 0.00 0.00 2.66
2561 6014 4.261801 ACGCCATACTCATTTGCTAAGTT 58.738 39.130 0.00 0.00 0.00 2.66
2562 6015 3.871594 GACGCCATACTCATTTGCTAAGT 59.128 43.478 0.00 0.00 0.00 2.24
2563 6016 4.122776 AGACGCCATACTCATTTGCTAAG 58.877 43.478 0.00 0.00 0.00 2.18
2564 6017 4.119862 GAGACGCCATACTCATTTGCTAA 58.880 43.478 0.00 0.00 33.86 3.09
2565 6018 3.492656 GGAGACGCCATACTCATTTGCTA 60.493 47.826 0.00 0.00 36.34 3.49
2566 6019 2.555199 GAGACGCCATACTCATTTGCT 58.445 47.619 0.00 0.00 33.86 3.91
2567 6020 1.599542 GGAGACGCCATACTCATTTGC 59.400 52.381 0.00 0.00 36.34 3.68
2568 6021 2.213499 GGGAGACGCCATACTCATTTG 58.787 52.381 0.00 0.00 38.95 2.32
2569 6022 1.837439 TGGGAGACGCCATACTCATTT 59.163 47.619 0.00 0.00 38.95 2.32
2570 6023 1.139058 GTGGGAGACGCCATACTCATT 59.861 52.381 0.00 0.00 38.95 2.57
2571 6024 0.753262 GTGGGAGACGCCATACTCAT 59.247 55.000 0.00 0.00 38.95 2.90
2572 6025 0.613572 TGTGGGAGACGCCATACTCA 60.614 55.000 0.00 0.00 38.95 3.41
2573 6026 0.753262 ATGTGGGAGACGCCATACTC 59.247 55.000 0.00 0.00 38.95 2.59
2574 6027 0.465705 CATGTGGGAGACGCCATACT 59.534 55.000 0.00 0.00 38.95 2.12
2575 6028 0.464036 TCATGTGGGAGACGCCATAC 59.536 55.000 0.00 0.00 38.95 2.39
2576 6029 1.423584 ATCATGTGGGAGACGCCATA 58.576 50.000 0.00 0.00 38.95 2.74
2577 6030 1.345741 CTATCATGTGGGAGACGCCAT 59.654 52.381 0.00 0.00 38.95 4.40
2578 6031 0.752658 CTATCATGTGGGAGACGCCA 59.247 55.000 0.00 0.00 38.95 5.69
2579 6032 0.753262 ACTATCATGTGGGAGACGCC 59.247 55.000 0.00 0.00 0.00 5.68
2580 6033 2.623889 AGTACTATCATGTGGGAGACGC 59.376 50.000 0.00 0.00 0.00 5.19
2581 6034 5.306394 TCTAGTACTATCATGTGGGAGACG 58.694 45.833 2.33 0.00 0.00 4.18
2582 6035 7.768807 ATTCTAGTACTATCATGTGGGAGAC 57.231 40.000 2.33 0.00 0.00 3.36
2583 6036 8.783660 AAATTCTAGTACTATCATGTGGGAGA 57.216 34.615 2.33 0.00 0.00 3.71
2584 6037 9.265901 CAAAATTCTAGTACTATCATGTGGGAG 57.734 37.037 2.33 0.00 0.00 4.30
2585 6038 8.210946 CCAAAATTCTAGTACTATCATGTGGGA 58.789 37.037 2.33 0.00 0.00 4.37
2586 6039 7.993183 ACCAAAATTCTAGTACTATCATGTGGG 59.007 37.037 18.10 12.38 0.00 4.61
2587 6040 8.964476 ACCAAAATTCTAGTACTATCATGTGG 57.036 34.615 2.33 11.29 0.00 4.17
2590 6043 9.722056 GCAAACCAAAATTCTAGTACTATCATG 57.278 33.333 2.33 0.00 0.00 3.07
2591 6044 9.461312 TGCAAACCAAAATTCTAGTACTATCAT 57.539 29.630 2.33 0.00 0.00 2.45
2592 6045 8.726988 GTGCAAACCAAAATTCTAGTACTATCA 58.273 33.333 2.33 0.00 0.00 2.15
2593 6046 8.182227 GGTGCAAACCAAAATTCTAGTACTATC 58.818 37.037 2.33 0.00 0.00 2.08
2594 6047 7.148306 CGGTGCAAACCAAAATTCTAGTACTAT 60.148 37.037 2.33 0.00 0.00 2.12
2595 6048 6.148150 CGGTGCAAACCAAAATTCTAGTACTA 59.852 38.462 1.89 1.89 0.00 1.82
2596 6049 5.048991 CGGTGCAAACCAAAATTCTAGTACT 60.049 40.000 0.00 0.00 0.00 2.73
2597 6050 5.049267 TCGGTGCAAACCAAAATTCTAGTAC 60.049 40.000 0.00 0.00 0.00 2.73
2626 6118 6.092259 GGCGTAGTTTGAACATATTCTCAGTT 59.908 38.462 0.00 0.00 35.69 3.16
2629 6121 4.873827 GGGCGTAGTTTGAACATATTCTCA 59.126 41.667 0.00 0.00 35.69 3.27
2630 6122 4.873827 TGGGCGTAGTTTGAACATATTCTC 59.126 41.667 0.00 0.00 35.69 2.87
2682 6174 8.547967 TCTACTAGAAACATGGTTGTCATTTC 57.452 34.615 0.00 0.00 34.06 2.17
2703 6195 1.324736 GTGCAGCGCAGTAACATCTAC 59.675 52.381 11.47 0.00 40.08 2.59
2710 6202 0.321564 AGGATTGTGCAGCGCAGTAA 60.322 50.000 11.47 0.00 40.08 2.24
2760 6252 7.449395 GTGGACCATATGTATGTAGTAGGTACA 59.551 40.741 0.00 0.00 45.93 2.90
2761 6253 7.668886 AGTGGACCATATGTATGTAGTAGGTAC 59.331 40.741 0.00 0.00 31.82 3.34
2763 6255 6.621394 AGTGGACCATATGTATGTAGTAGGT 58.379 40.000 0.00 0.00 31.82 3.08
2764 6256 6.948886 AGAGTGGACCATATGTATGTAGTAGG 59.051 42.308 0.00 0.00 31.82 3.18
2765 6257 9.168451 CTAGAGTGGACCATATGTATGTAGTAG 57.832 40.741 0.00 0.00 31.82 2.57
2766 6258 8.887393 TCTAGAGTGGACCATATGTATGTAGTA 58.113 37.037 0.00 0.00 31.82 1.82
2767 6259 7.756614 TCTAGAGTGGACCATATGTATGTAGT 58.243 38.462 0.00 0.00 31.82 2.73
2768 6260 8.637196 TTCTAGAGTGGACCATATGTATGTAG 57.363 38.462 0.00 0.00 31.82 2.74
2769 6261 8.857098 GTTTCTAGAGTGGACCATATGTATGTA 58.143 37.037 0.00 0.00 31.82 2.29
2770 6262 7.470147 CGTTTCTAGAGTGGACCATATGTATGT 60.470 40.741 0.00 0.00 31.82 2.29
2771 6263 6.863645 CGTTTCTAGAGTGGACCATATGTATG 59.136 42.308 0.00 0.00 0.00 2.39
2772 6264 6.516860 GCGTTTCTAGAGTGGACCATATGTAT 60.517 42.308 0.00 0.00 0.00 2.29
2773 6265 5.221185 GCGTTTCTAGAGTGGACCATATGTA 60.221 44.000 0.00 0.00 0.00 2.29
2774 6266 4.441634 GCGTTTCTAGAGTGGACCATATGT 60.442 45.833 0.00 0.00 0.00 2.29
2791 6283 0.875059 AGCTAACCTGCAAGCGTTTC 59.125 50.000 2.57 0.00 43.63 2.78
2796 6288 0.322008 ACTGGAGCTAACCTGCAAGC 60.322 55.000 0.00 0.00 41.66 4.01
2804 6296 1.544691 TCAGGTCGAACTGGAGCTAAC 59.455 52.381 29.35 0.00 42.50 2.34
2808 6300 1.446966 GCTCAGGTCGAACTGGAGC 60.447 63.158 29.35 28.17 38.98 4.70
2886 6378 1.068588 TGAAGGGTGTCAGACTTCGTG 59.931 52.381 1.31 0.00 42.60 4.35
2888 6380 2.526304 TTGAAGGGTGTCAGACTTCG 57.474 50.000 1.31 0.00 42.60 3.79
2896 6388 7.029563 CAGCAGTTTATTATTTGAAGGGTGTC 58.970 38.462 0.00 0.00 0.00 3.67
2925 6417 0.323816 TGGTTGTTTGGGTGCTGACA 60.324 50.000 0.00 0.00 0.00 3.58
2927 6419 1.480137 CTTTGGTTGTTTGGGTGCTGA 59.520 47.619 0.00 0.00 0.00 4.26
2928 6420 1.206849 ACTTTGGTTGTTTGGGTGCTG 59.793 47.619 0.00 0.00 0.00 4.41
2950 6442 2.954318 CAATAGTGATTGAGGCAAGGGG 59.046 50.000 0.00 0.00 44.59 4.79
2951 6443 3.624777 ACAATAGTGATTGAGGCAAGGG 58.375 45.455 0.00 0.00 44.59 3.95
2967 6459 3.265479 TGATGTGGTGGATGGTCACAATA 59.735 43.478 0.00 0.00 43.38 1.90
2971 6463 2.292267 GATGATGTGGTGGATGGTCAC 58.708 52.381 0.00 0.00 36.95 3.67
2984 6476 3.118738 GGTAGGAACGAACAGGATGATGT 60.119 47.826 0.00 0.00 39.69 3.06
2994 6486 0.035739 TGCCCAAGGTAGGAACGAAC 59.964 55.000 0.00 0.00 0.00 3.95
3010 6502 3.462199 GATAGGGGACGCACCTGCC 62.462 68.421 10.46 0.00 39.12 4.85
3011 6503 2.109181 GATAGGGGACGCACCTGC 59.891 66.667 10.46 0.19 39.12 4.85
3012 6504 2.032860 CTGGATAGGGGACGCACCTG 62.033 65.000 10.46 0.00 39.12 4.00
3013 6505 1.762460 CTGGATAGGGGACGCACCT 60.762 63.158 5.94 5.94 42.15 4.00
3014 6506 2.808206 CCTGGATAGGGGACGCACC 61.808 68.421 0.00 0.00 40.63 5.01
3015 6507 2.822399 CCTGGATAGGGGACGCAC 59.178 66.667 0.00 0.00 40.63 5.34
3016 6508 3.161450 GCCTGGATAGGGGACGCA 61.161 66.667 0.00 0.00 44.75 5.24
3017 6509 3.942439 GGCCTGGATAGGGGACGC 61.942 72.222 0.00 0.00 44.75 5.19
3018 6510 1.831652 GATGGCCTGGATAGGGGACG 61.832 65.000 3.32 0.00 44.75 4.79
3019 6511 1.492993 GGATGGCCTGGATAGGGGAC 61.493 65.000 3.32 0.00 44.75 4.46
3020 6512 1.151810 GGATGGCCTGGATAGGGGA 60.152 63.158 3.32 0.00 44.75 4.81
3021 6513 2.596851 CGGATGGCCTGGATAGGGG 61.597 68.421 3.32 0.00 44.75 4.79
3022 6514 1.418908 AACGGATGGCCTGGATAGGG 61.419 60.000 3.32 0.00 44.75 3.53
3024 6516 0.319900 CGAACGGATGGCCTGGATAG 60.320 60.000 3.32 0.00 0.00 2.08
3025 6517 1.745890 CGAACGGATGGCCTGGATA 59.254 57.895 3.32 0.00 0.00 2.59
3026 6518 2.505982 CGAACGGATGGCCTGGAT 59.494 61.111 3.32 0.00 0.00 3.41
3027 6519 4.467084 GCGAACGGATGGCCTGGA 62.467 66.667 3.32 0.00 0.00 3.86
3028 6520 3.976701 AAGCGAACGGATGGCCTGG 62.977 63.158 3.32 0.00 32.32 4.45
3029 6521 2.040544 AAAGCGAACGGATGGCCTG 61.041 57.895 3.32 0.00 32.32 4.85
3030 6522 2.040544 CAAAGCGAACGGATGGCCT 61.041 57.895 3.32 0.00 32.32 5.19
3031 6523 2.485122 CAAAGCGAACGGATGGCC 59.515 61.111 0.00 0.00 32.32 5.36
3032 6524 2.253414 GACCAAAGCGAACGGATGGC 62.253 60.000 0.00 0.00 34.45 4.40
3033 6525 0.953471 TGACCAAAGCGAACGGATGG 60.953 55.000 0.00 0.00 37.19 3.51
3034 6526 1.062587 GATGACCAAAGCGAACGGATG 59.937 52.381 0.00 0.00 0.00 3.51
3035 6527 1.369625 GATGACCAAAGCGAACGGAT 58.630 50.000 0.00 0.00 0.00 4.18
3036 6528 0.672401 GGATGACCAAAGCGAACGGA 60.672 55.000 0.00 0.00 35.97 4.69
3037 6529 0.673644 AGGATGACCAAAGCGAACGG 60.674 55.000 0.00 0.00 38.94 4.44
3038 6530 0.721718 GAGGATGACCAAAGCGAACG 59.278 55.000 0.00 0.00 38.94 3.95
3039 6531 0.721718 CGAGGATGACCAAAGCGAAC 59.278 55.000 0.00 0.00 38.94 3.95
3040 6532 0.320374 ACGAGGATGACCAAAGCGAA 59.680 50.000 0.00 0.00 38.94 4.70
3041 6533 0.108804 GACGAGGATGACCAAAGCGA 60.109 55.000 0.00 0.00 38.94 4.93
3042 6534 0.389817 TGACGAGGATGACCAAAGCG 60.390 55.000 0.00 0.00 38.94 4.68
3043 6535 1.936547 GATGACGAGGATGACCAAAGC 59.063 52.381 0.00 0.00 38.94 3.51
3044 6536 3.251479 TGATGACGAGGATGACCAAAG 57.749 47.619 0.00 0.00 38.94 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.