>input_sequence_61782
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----------------------ATGGGATGGTCGGAAGTCATAGGCAACGACGTCGCCACCGCCACACCGGCAGTGCGCA
ACCGTGTTGATAGACGGGATGAATGGGGCCAAAGAGCCACGGCCACCGGTGGCGACTCCTCAAAGTCTGCAATAGGGAGC
CGCTTCGAGCGACTCGGCAAGGTCGGTGAAGGGGGCTTCGGTGTCGTTTACCGGGCGAGGGACCGCCGCACCGGCGAGAT
CGTCGCTGTCAAGTGCCTCCGCACAAACA------AGTACGCCCACGACGACAGCGGCGACCGCTACCTCTCCGCCTTCG
CGGGCGAGGTCAGCGCCTTGGAGAAGTGCAGCGGCCACCCGTCCATCGTGCAGCTGCGCGCCTCGGGCCAGCACGACGGC
GAGGCCTTTATCGCCATGGAGTTCGTCGGGCAGACCCTCAGGCACGTCATGAAGCGCGTCTGTTTCGGGAGGAGACACAC
CGAGATGGAGGTCTGCCTGATGATGAGGCAGCTCCTCGCCGGCGTAATGAGGATGAACCGTCTAGGTCTCATGCATCGTG
ACCTTAAGCCGGGGAACGTGCTCGTCGACGACCGCAGGAACCTCAAGATCTGTGACCTTGGGCTATCATGCAGCATGGCC
GATGGGCCGCCCTGCTCAAACCACATTGGAACACGGGGTTACCGCGCACCAGAGCTCCTCCTAGGGTCCACGAATTACGA
CGAGCGCATCGACTCTTGGGCTCTTGGCGTCATGATGGCTGAGCTACTTGCTGGTCACCACCCTTTCTATGGGAAGACCG
ACATGGACCACCTCAGTGAGATTTTGGACCTTCTTGGTACAGCAGACATCAAAGAGTGGCCGGGCTATGATGGGCGGCAG
CTGCCCGGCGGATGGGCATTGCATAGCAGTTTGCGCTCCATGTTCCGATCTCCTGCCGATGCTAGGAGAAGATGCCGCCC
CCAACTTTCAGAAGCTGGTTTTGAGGTCTTGAGCGGCCTTCTGCGATGCAATCCTGAAAAGAGACTCACGGCGAGGGGCG
CGCTGCGGCATAGGTGGTTTAAAGAGACCAACTTCAGGGCTGCAAAGAGCTGA---------------------------
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----------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G031000
ATATATTTTCCTTAT-AAAAAATAAGATAAATGTTTCATTATTGTTAACGGATATATTTGGCAGGTTCATACTTTTTAGA
TTAATGTAAAATATAAAGACATAAGGGTGTTGGTTCATACTGTACAAAAAGAAG---AAGAAGAGAAACAATATCTAGGA
GAACATGATTTCATACATGAGCATAGACTAAATTTATTTGTAGGATTTTTACCTGTGTTTCCATCCCTTTACATCCATGT
ACATCAAAATTTTCTAATCTGCCACGATTAGTGTGAAGCTCGACTGATAAATGCATGTGTTCGAGACTACTTCTCTATTC
AAAATCAACAATGTTTAGAAAGGGTTCATCCAATATTATCTAACTTTGACAAATAGTTTGTGTAAAATATATTTCGAAGG
GTAATAATTTTTATTTTGTACTCCCTCTGTAAACTAATATAAGAGCGTTTAGAATACTAAAGTAGTGATCTATACGCTCT
TATATTAGTTTACGGAGGGAGTAGACGAGTATTTTTAAG-----------------------------------------
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----------------------------------------------------------------GGTT-AAAAATTGCTA
CTTAATATATGGCCTTTGGCCTTGTCGCACAAAAAG-TATAATTACATTTCTCCTATTTTTTTAATAAAATCG-------
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-------------------------------------------------GAATACAATTATTTATTGATGTGCTACAGAG
GCATTTCACCACGTTTAGACCGTGGCAGCGTTCGATCTTGGAAGC---TATGATTTTCAGAATATGGAGTTGCAGG----
------------------TGCCCCTTTCCCATAACACGTAGTACATAAAGGATGT-------------------------
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-----------------------------------------AAAAGCGGAAACATATATTGCTTGTTTCTTAGCATTTTT
TTAATTTCATAACTACCATTGTTCCTTTCCCAATATAAAATGGTCAACATCCGACTCAAATC------------------
----------------------AGGAATAGGAGTACGACGCGGAAACTAATTAACGGCGCCACGCGTATTAGTAACAATA
TACTATAAACGAGAGCCGCC----CGCTGGCTATAAAAGCGAGCCTAACCCGCCTCAGATCGTCAGAGTAGTTGGAGTTG
AGTTGCTGCCTAGTTGCAAAAGATGGGATGGTCGGAAGTCATAGGCAACGACGTCGCCACCGCCACACCGGCAGTGCGCA
ACCGTGTTGATAGACGGGATGAATGGGGCCAAAGAGCCACGGCCACCGGTGGCGACTCCTCAAAGTCTGCAATAGGGAGC
CGCTTCGAGCGACTCGGCAAGGTCGGTGAAGGGGGCTTCGGTGTCGTTTACCGGGCGAGGGACCGCCGCACCGGCGAGAT
CGTCGCTGTCAAGTGCCTCCGCACAAACA------AGTACGCCCACGACGACAGCGGCGACCGCTACCTCTCCGCCTTCG
CGGGCGAGGTCAGCGCCTTGGAGAAGTGCAGCGGCCACCCGTCCATCGTGCAGCTGCGCGCCTCGGGCCAGCACGACGGC
GAGGCCTTTATCGCCATGGAGTTCGTCGGGCAGACCCTCAGGCACGTCATGAAGCGCGTCTGTTTCGGGAGGAGACACAC
CGAGATGGAGGTCTGCCTGATGATGAGGCAGCTCCTCGCCGGCGTAATGAGGATGAACCGTCTAGGTCTCATGCATCGTG
ACCTTAAGCCGGGGAACGTGCTCGTCGACGACCGCAGGAACCTCAAGATCTGTGACCTTGGGCTATCATGCAGCATGGCC
GATGGGCCGCCCTGCTCAAACCACATTGGAACACGGGGTTACCGCGCACCAGAGCTCCTCCTAGGGTCCACGAATTACGA
CGAGCGCATCGACTCTTGGGCTCTTGGCGTCATGATGGCTGAGCTACTTGCTGGTCACCACCCTTTCTATGGGAAGACCG
ACATGGACCACCTCAGTGAGATTTTGGACCTTCTTGGTACAGCAGACATCAAAGAGTGGCCGGGCTATGATGGGCGGCAG
CTGCCCGGCGGATGGGCATTGCATAGCAGTTTGCGCTCCATGTTCCGATCTCCTGCCGATGCTAGGAGAAGATGCCGCCC
CCAACTTTCAGAAGCTGGTTTTGAGGTCTTGAGCGGCCTTCTGCGATGCAATCCTGAAAAGAGACTCACGGCGAGGGGCG
CGCTGCGGCATAGGTGGTTTAAAGAGACCAACTTCAGGGCTGCAAAGAGCTGATTGGTTAACTTGCACAATCCATAATGT
AGCTGCCTGTGTGGAATTAATGTATGCGGAGCCAGATAGTCGTAATTCACCTCATATGTAAGTTTGAAATGTATGGGCCT
GCCCACATATCAGTTTCTTGGAAAAATAATTAGCATGAGTGGATTTCCACCAATGTCTTCCTTCGCCTGCTCGACCCTCC
CTTCGGCATCATCCTAACCATCAGCCGTGTCACTCATGGTCGATGACATTGTCA--TGTAGCCTCGTCACATAATGCTTG
CCTGATGCG--CCTCCTATGCCGAGCCACTGGCGCCCTGTTAATCCCTCTAACCTTCTTCCACTTATTTGCCGCCGGCAC
CACTGGAACCCATCAACCTCCATCTCATTCCCGTAGTATTCACCTCGGAGCTGTACACCCGGCCT---------------
-----TCTTCTTGGACGAAGTCAAATGCCATGAATCACGTTTCTAGGCGACTTACCATCAACAACTGGGAAATGTACGCA
TCATATCTGAATAAACTTAGCAAATGAGTATGGCGTCTCCCACATGATAGTA----------------------------
-----------CTAGAATTTTGGTTTGCACCGAGTATAACTGAGAATATGTTCAAACTACGCCCATGCACACATGTATAT
TTCTTGAGAATAAGAAATGACAACCATGTTTCTAGTAGATGTTACTGCGCTGCACAATCCTCCTAACATATTATACCACT
TAAAGTATATATGTACCTACTACATACATATGGTCCACTCTAGAAACGCTTGCAGGTTAGCTCCAGTTCGACCTGAGCGA
GGCGATCTTCCGCTCGTTCGAGGACGCCGGGTGCGGGCTGACCCCCAAGATTTTATGCACGAAGTCTGACACCCTTCAAA
TAATAAACTGCTGTCATGTCAGCACCCAAACAACCAAAGTACCCCTTGCCTCAATCACTATTGTGACCATCCACCACATC
ATCCTGTTCGTTCCTACCTTGGGCAGGTGCGTCCCCTATCCAGGCCATCCGTTCGCTTTGGTCATCCTCGTCATCA
>chr3D_1
ATATATCTTGCTTATCAAAAAATAAGAGAAAGGTATCATTATTGTTACAGGATACATTTGGCACGTTTGTATTTTTTAGA
TTAATGTAAAATATAAAGACATAAGGGTGTTGGTTCATACT-----AAAAAAAG---AAGAACAGAAACAATATCTTGGA
GAACAGAATTTCAT----GAGCGTAGTCTAACTTTATGTGTATGATTTTTACCTGTATTCCCATCCCTTTACATGTGTGT
ACGTCAAAATTTTCTTATCTGCCACGATTAGTGTGAAGCTCGCCTAATGAATGCATGTGTTCGAGACTACTTCTCTATTG
AAAATCAACAATGTTTAGAAAGGGTGCACCCAATATTATATAACATTGACAAATAGTTTGTGTAAAATATATTTTGAAGG
GCAGTATTTTTCAGTTTGTATAA---------------------------------------------------------
--------------------------GAGTATTTTTAACGGATACTGCCTTTGGAGGCCGAGCTCCATGGAGCTCGGTTT
TAAATTCAAAATTCGTCAAATTTTATATTTTCTATGTTTTAAAAAATTCTAAAAACAAATACAGATATACATGGAGGCAT
TACACACATGTGTGTAAATTTTCAGGGCAATATATGTTGAAACAAGGGTGTGCAAAAAAGACAAATGTCGGGCTTTTTAA
CACATGATACTATTCATCCTCCCAGGCCATGAATTTGTCCTTTTTGTACAGGTCGCATTTCAACGTATTTCATCCTGAAA
TTTTACTTACATATACATAACATCCTGGTTTACTAGCACAATATTTTTTTTTAAATTCGAAACCAAAAACTTTGAATTTT
GAATTTTTCAAAAAAAGGCCTCCATGGAGGCCGAGAGCCATACGTCCGTTCTCGTATTTTTAAAGGTT-AAAAAATGCTA
CTTAATATATGGCCTTTGGCCTTCTCGCAATAACATATATAATTACATTTCTCCTGGTTTTTTATTAATAAAATAACAG-
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----------------------------------------------------TACAATTACTTATTGATGTGCTACAGAG
GCATTTCACCAAGTGAAGACCATGGCAGCGTTCGATCTTGGAAGC---TATGATTTTCAGAATATGGAGTTGCACG----
------------------TGTCCCTTTCCCATAACACGTA---CATAAAGGATGTACTAGAAGAACGCCCGTGCATTGCA
ACGGGGCCACATTAACTTTAAGAGTTCAATATTAATATTCTCATACATATCAAGTAACATTGGCGACCTTTTTTACTATC
AAATCCTCATACACACACTCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCCCTCTCCCTCTCTCTCTCTAACACACACAC
ACATCCATCTTATTGGGGACGGGACCATAATCCATCTATTTCACACACACACGCGCTAGTGCATAACAATATGGGTTATG
TGTATTATATTTGCCACCACAATTGAGGGAATTAATTTCATGTAAATCGGCCAGCCATAGCTCTAAGAATACGCGGAGGA
GGTGGCCTGGGTCGGCGTCGGCGCCGTCCGGCACGAGCCACGGGCCCGCTTCCAAGCGCGTCTGCGCGCCGGCCACCCAC
GCCGGGTCCTTAAAGTGCCGCTTCCACCGCACCAACTCCCAGGACCACGCCTACGGCCAGGGCCAGGGAAGCCGCCCTTC
TTCACCCCCTTCACCGGCCGCGGCCAACGCGGTGCCGCAGCACCCGGCCTCGCCGTCCTCGTCCTTCGGCACCGTTGCGA
CCCAGTGAGTAAGCCCAAGCATCAGCCTCGAGAATCAAGAACGCTCGACAACGGAGAGGGAAGGGAAGATCATATACATG
TCATAAGAAAGGGAGTTTATTTACTTCTCCCACGATGTATTGTTTCCTTTGTTTGGACATTGATTACCATCCGTGAGTTA
AGGTAAGGTTAATGTGATTGAGGGGTTTTTCTGAAAATCAAATATTTGTTTTCTAATTAATGTGATTGAGTGATTTAAGG
TAAGATTAATTAATTTAGATTTGATCTTTAAAGATTGTTCGTGATTGATTCTACATTACTAAATAACTTGCGCCAGTATG
GAAAGTTCTGATCTGTTCAGATTTCTTTTGTTGTGTGAGAGGGTGACGTGAAAATAAACCGATGAAGTGGGGGGAGGGGA
CGAAAAAAAATCTACGGAAAAAAAACCAGCAAAGGTGGGAGGAGGTACCCAAAAAACCATGAGAGGTGGGACGAAAAAAC
ACCTGAAAGCGAGACTACCAACTGCTCCATTAGGAGTAGAGAAAAGCGAAAACATATATTGCTTGTTCTTAGCA--TTTT
TTAATTACATAACTACCAGTGTTTCTTTCCCAATATAAGATGGTCAACATCCGACTCAAAAGAAAAAAAATAGCATAACA
CTGGTGCGTTTCTTACCGAAATAGGAATAGGAGTACGACGCGGAAACTAATTAACGGCGCCAGGCGTATTAGTAACAGGA
TACTATAAACGAGAGCCGCC----CGCTGGCTATAAAAGCGAGCCTAACCCGCCTCGGATCGTCAGAGTAGTTGGAGTTT
AGTTGCTGCCTAGTTGCAAAAAATGGGATGGTCGGAAGTCATAGGCAACGACGTCGCCACCGCCACACCGGCAGTGCGCA
ACCGTGTTGATAGACGGGATGAATGGGGCCAAAGAGCCACGGCCACCGGTGGCGAATCCTCAAAGTCTGCAATAGGGAGC
CGCTTCGAGCGACTCGCCAAGATCGGTGAAGGGGGCTTCGGTGTCGTTTACCGGGCGAGGGACCGCCGCACCGGCGAGAT
CGTCGCTATCAAGTGCCTCCGCACAAACA------AGTACGCCCACGACGACAGCGGCGACCGCTACCTCTCCGCCTTTG
CGGGCGAGGTCAGCGCCTTGGAGAAGTGCAGCGGCCACCCGTCCATTGTGCAGCTGCGCGCCTCGGGCCAACACAACGGC
AAGGCCTTCATCGCCATGGAGTTCGTCGGACAAACCCTCAGGTATGTTATGAAGCACGTCCGTTTCGGGAGGAGACACAC
CGAGATGGAGGTCTGCCTGATGATGAGGCAGCTCCTCACCGGCGTGGGGAGGATGAACCGTCTAGGTCTCATGCACCGTG
ACCTTAAGCCGGGGAACGTGCTCGTCGACGACCGCAGGAACCTCAAGATCTGTGACCTTGGGCTATCATGCAGCATGACC
GATGGGCCGCCCTATTCAAACCACATTGGAACACGGGGTTACCGCGCACCAGAGCTCCTCCTTGGGTCCACGAATTACGA
CCAGCGCATCGACTCTTGGGCTCTTGGCGTCATGATGGCTGAGCTACTTGCTGGTCACCACCCTTTCTATGGGAAGACCG
ACATGGACCACCTCAGTGAGATCTTGGACCTTCTTGGTACAGCAGACATCAAAGAGTGGCCGGGCTATGATGGGCGGCAG
CTGCCCGGCGGATGGGCATTGCATAGCAGTTTGCGCTCCATGTTCCCATCTCCTGCCGATGCTAGGAGAAGATGCCGCCC
CCAACTTTCAGAAGCTGGTTTTGAGGTCTTGAGCGGCCTTCTGCGATGCAACCCTGAAAAGAGACTCACGGCAAGGGCCG
CGCTGCGGCATAGGTGGTTTAAAGAGACCAACTTCAGGGCTGCAAAGAGCTGATTGGTTAACTTGCACAATCCATAATGT
AGCTGCCTGTGTGGAATGAATGTATGCGGAGCCAGATAGTCGTAATTCACCTCATATGTAAGTTTGAAATGTATGGGCCT
GCCCACATATCAGTTTCTTGGAAAAATAATTAGCATGAGTGGATTCCCAGCAACGTCTTTGTTTGCCTGCTACTGTCCCT
CCTGCGTCAG--CCTAACCATCAGTACCGTCGCTCATGCTCGATGAAATTGTCGTGTGTCGCCTCGTCAAATAATGCTTG
TGTGATGGGCCCCTCCTATGCCGAGCCACCGGCACCCATCAAC-------------------------------------
-------------------------------------CTCCA--------------------CCTCGGAGTTGTACACCC
GACCTTCTTTTTCGACGAAATCAAATGCCATGAATCACGTTTCTAGGCGAATGACCATCAACAAAT-GGAAATGTACGCA
TCATATATGAA---------------------------------------TA----------------------------
-----------CTAGAATTTTGGTTTGCACCGAGTATGACCCAGAATATGTTCAAACTACGCCGATGCACACATGGATAT
TTCTTGAGAATAATAAATGACAACCATGTTTCTACTAGATGCTACTGCGCTGCACAATCCTCCTAACATCTTATACCACT
TAAAGTACGTACCTG-----------CATATGGTCCACTCTACAAACTCTTGCAGTTTATCTCCAGTTTGACCTGAGCGA
GACGATCTTCCGCTTCTTCGAGGCCGCCGG--GCGGGCTGACCCCCAAGATTTTATGTATGAAGTCTCACACCCTTTAAC
TAGTAAACTGCTGTCAAGCTAGCACCCAAACAACCATAGTATACCTTGCCTCAATCACCATTATGACCATCCACCCCATC
ATCCTCTTCGTTC---------------------------------------------------------------
>chr3B_1
ATATATCTTCCTTATCAACAAATAATAGAAAGGTATCACTATTGTTAACGGATATATTTGGCACGTTCATATTTTTTAGA
TTAATGTAAAATATAAAGACATAAGGTTGCTGGTTCATACT-----AAAAAAAGAGGAAGAACAGAAACAATATCTAGGA
GAACACGATTTCATACATGACCACAGTCTAAATTTATTTGTAGGATTTTTACATGTATTCCCATCCCTTTACATCCGTGT
ATGTCAAAATTTTCTTATCTGCCACGATTAGTGTGAAGCTCGCCTGATAAATGCATGTGTTCAAGACTACTTCTCTATTC
AAATTCAACAATGTTTAGAAAGGGTGCACCCAATATTATGTAACTTTGACAAATAGTTTGTCTAAAA-ATATTTCGAAGG
GTAGTAATTTTTATTTTGTATAA---------------------------------------------------------
--------------------------GAGTATTTTTATG-----------------------------------------
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----------------------------------------------------------------GGTTAAAAAATTGCTA
CTTAATATATGGCCTTTGGCCTTCTCACAAAAAAAG-TATATTTACATTTCTCCTAGTTTTTTATTAATTTTTTTTCGAA
ACGGAGGCAAAGATTGCCTCATCTATTAATTAAGCAGGCCCGGTTAATTACGAAAAACCGGGCAAAAACCGGAACAACAA
GGGCCAAGCCCACTCCCATAGACTGAAACACACTGGGCAAAGCCCACCCTAATCGACGACAAGTTGACATGCGGCCAGAC
AACGCAGCTCCGACTCTGACGAAGAACTTAGAAGAACAGAACCAGGCACGGCTGGCGCCACGGAAAATCGCCGAAAGGGC
CACCTGCAGCCAGTCATCGTACACCACAGGGCTCCGCCGCCACAGCTTCGACTCCACAGCAACAAGCAAACCGAGGCAAA
ACCATGGACACGCCGAAGAAGAGCCGACTACCGCAACCATTGCCGCGTCGCCGACATCGCTCCCACCATCATTGCTGCCA
CAAAAGTCTGGTCACCACAGTGATTCTCTCGGGGCCGCCGCCCCGACATCCACCGCTCCATCACGCCCAGCGCAATCAAC
CAACACCGCCTTCCGGGGCCGCCGCCCCGACATACCACCACTCCCCTCGAGCAGCAACGCCGCACAACCCAGCTGCCCAC
AGCCCACGCTGCTCAGGGCAACCGCTCGCAGACCACGAACGTCGCACCACATCCGGGGCCGCCGCCCCGACGTAAAGTCA
GACCTCCCCCTCTGGGACGCATCGACCGAGCCGACACCCCTACCGCCCAAGCGGGACAAGGATGCCACCCAACCAATGTC
GAGATAGAACCCCACCTCATAGAGTTGCCACTCACATTGTTCCCGAGATCGCCATCTCGACGCACAATCAGAAACCATCC
GGAGCCGCCGCCCCGACGTCCACTGTCCCCAACGACGAGGAGATCCGTGCAAACTGCAACATGCTGACTCTCCAAGACGA
TGCCTCAAAGAAGGAAACGACGTAGCCGCCGTCATCGTCCGCTTCGACCAACCGAAGCTAGGGATTTCTCCCGGAGAGTT
GTGTAATGGAGCTCCATGGCAACACCTTCAAGAAGGGGAATGACACCATGGCCATGGGCCCATGGCGCCGCTGTTGCCGG
CATCGACCCAAGGTCAGTGCCAGACTTTCGCCCGGAGCTCCTTCACACCTCCGAATCCGAGCAGATCCGAAGCACTGCAC
AGTGCACAATCCCCATGATCGACTTCCACCGGCTCCACCTCGTCGTGCAGCTACTGCCGCACCTCGCAACCGCGCCGGCA
ACCACAAACTCACCTCCCCAAACCTGCTCGACGCCAGAACCACGGCGCCCGAGCCCCTTGTGCAGCTGCTGCCCGGCCCC
TGCTACCAGCGGCACCGCCGCGAGCTGCAGACGCCCCGAGACGACGCCACCGCTCGCGCGCCAGTGTAGCCCGCCAGCAC
GACCACCACAAACCTCCCCGCGCCCAGCCGCAGCCCCACCGAATCCGACCTAGGCCGGCCAGATCCGGCCGCCACGCGCC
TACCGCCGCCCCTCAGCCGCGTCCCACCGCCCGCGCCGGAGCAAGGGAGCAACCTCGAGGGCCGACGCCGCCGGACACCC
GGAGCAGCCTCCGCGACGACAGTCGTCGCCGAATCGCTCCCGAGCGGCCGGGATCCGCGCGCCGCGCCACCCAGCGAGGT
GCCCCGCCGCCACCCTCCCTGGAGCCAGTCCGGGCTTTGCCGGCGGGGTCCTCAGGCGGCGGCGAGACGAGGGGAGGGGG
TGGAGGGGAGAGGTGGCGGCGCTGGTGGGGGCTCCCCCGAGTCGCCAGAGCAGAGGCGACGCGGGGGTCGGGTGGATGGG
ATGCGTGCTAGAGAACTATGGGTGTTTCAGTTTTTTATTAATAAAATAACAATACAATTACTTATTGATGTGCTACAGAG
GTATTTCACCAAGTTTAGA-------AGCGTTCGATCTTGGAAGCTAGTATGATTTTCAGAATATGGAGTTGCTTATAAC
AATACAATTACTTATTGATGTCCTTTTCCCAGAACACGTA---CATAAAGGATGTAAAAGCGGGAACA------------
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-------------TACCGGTGTTCCTTTCCCAATATAGTATAAAATAGCAAAATACTGGTGCGTTTCTTACCGGAATAGA
-------------------------AATAGGAGTACGAGGCGGAAACTAATTAACGGCGCCACGCGTATTAGTAACAGGA
TACTATAAACGAGAGCCGCC----CGCTGGCTATAAAAGCGAGCCTAACCCGCCTCAGATCGTCAGAGAAGTTGGAGTTG
AATTGCTGCCTAGTTACAAAATATGGGATGGTCGGAAGTCATAGGCAACGACGTCGCCACCGCCACACCGGCAGCGCGCA
ACCGTGTTGATAGACGGGGTGAATGGGGCCAAAGAACCACGGCCACCGGTGGTGACTCTTCAAAATCTGCAATCGGTGGC
CGCTTCCAGCGACTCGACGAGATCGGTGCAGGGGGCTTCGGTGTGGTTTACCGGGCGAGGGACCGCCACACTGGCGAGAT
CGTCGCCATCAAGTGCCTCCGCACAAACA------AGTACGCCCACGACGACAGCGGCGACTGCTACCTCTCCGCCTTTG
CAGGAGAGGTCAGCGCCTTGGAGAAGTGCAGCGGCCACCCGTCCATCGTGCAGCTGCGCGCCTCGGGTGAGCATGACGGC
GAGGCCTTCATCGCCATGGAGTTCGTCGGGCAGACCCTCAGGCACGTCATGAAGCGCGTCCGTTTCGGGAGGAGACACAC
CGAGATGGAGGTCTGCGTGATGATGAGGCAGCTCCTCACCGGCGTGGGGAGGATGAACCGTCTAGGTCTCATGCATCGTG
ACCTTAAGCCGGGGAATGTGCTCGTCGACGACCGCAAGAACCTCAAGATCTGTGACCTTGGGCTATCATGCAGCATGGCC
GATGGGCCGCCCTACTCAAACCACATCGGAACACGGGGTTACCGCGCACCAGAGCTCCTCCTAGGATCCACGAATTACGA
CGAGCGCATCGACTCTTGGTCTCTTGGCGTCATGATGGCTGAGCTACTTGCTGGTCACCACCCTTTCTATGGGAAGACCG
ACATGGACCACCTCAGCGAGATTTTGGACCTTCTTGGTACAGCAGACATCAAAGAGTGGCCGGGCTATGATGGGCGGCAG
CTGCCCGGCGGATGGTCATTGCATAGCAGTTTGCGCTCCATGTTCCCATGCCCTGCCGATGCTAGGAGAAGATGCCGCCC
CCAACTTTCAGAAGCTGGTTTTGAGGTCTTGAGCGGACTACTGCGATGCAACCCTGAAAAGAGACTCACGGCGAGGGCCG
CGCTGCGGCATAGGTGGTTTAAAGAGACCAACTTCAGGGCTGCAAAGAGCTGATTGGTTAACTTGCACAATCCATAATGT
AGCTGCCTGTGTGGAATGAATGTATGCGGAGCCAGATAGTCGTAATTCACCTCATATGTAAGTTTGAAATGTATGGGCCT
GCCCACATATCAGTTTCTTGGAAAAATAATTAGCATGAGTGGATTTCCACCAACGTCTTTGTTTGCCCCCTACTGTCCCT
CCTGCGTCAG--CCTAACCATCAGTACCGTCGCTGATGCTCGATGAAATTGTCGTGTGTCGCCTCGTCAAATATTTCTTG
TGTGATGAGCCCCTCCTATGCCGAGCCACTGGCACCCATCAAC-------------------------------------
-------------------------------------CTCCA--------------------CCT---------------
-----TCTTTTTCGACGAAATCAAATGCCATGAATCACGTTTCTAGGCGACGGACCATCAACAAAT-GGAAATGTACGCA
TCATATATGAA---------------------------------------TAAAGTTAGCAAATGAGCATGGCGTCTCCC
ACATGATAGTACTAGAATTTTGGTTTGCACCGAGTATGACCCAGAATATGTTCAAACTATGCCGATGCACACATGGATAT
TTCTTGAGAATAATAAATGACAACCATGTTTCTACTACATGCTACTGCGCTGCACAATCCTCCTAACATCTTATAGCACT
TAAAGTACGTACCTT-----------CATATGGTCCACTCTACAAACTCTTGCAGTTTATCTCCAGTTCGACCTGAGCGA
GATGATCTTCTGCTTCTTCGAGGCCGCCGG--GCGGGCTGACCCCCAAGATTTTATGTATGAAGTCTCACACCCTTCAAC
TAGTAAACTGCTGTCAAGCTAGCACCCAAACAACCATAGTATACCTTGCCTCAATCACCATTATGACCATCCACCCCATC
ATCCTCTTCGTTCC--------------------------------------------------------------
>chr3B_1
ATATATCTTCATTATCAGAAAATAAGAGAAAGATATCACTATTGTTAACGGATATACTTGGCATGTTCGTATTTTTTAGA
TTAATGTAAAATATAAAGACACAAGGGTGTTGGTTCATACT-----AAAAAAGAGAAG-GAACAGAAACAATATCTAGGG
GAACACGATTTCATACACGAGCATAGTCTAAATTTATTTGTAGGATTTTTACATGTATTCCCACCCCCTTACATCCGTGT
ATGTCAACATGTTCTTATCTGCCACGATTAGTGTGAAGCTTGCCTGATAAATGCATGTGTTCGAGACTACTTCTCTATTC
AAGTTCAACAATGTTTACAATGGGTGCACCCAATATTATGTAACC-TGACAAATAGTTTGTGTAAAA-ATATTTCGAAGG
GTAGTGATTTTTATTTTGTGTAA---------------------------------------------------------
--------------------------GAGTATTTTTAAG-----------------------------------------
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----------------------------------------------------------------GGTTAAAAAATTGCTA
CTTAATATATGGCCTTTGGCCTTCTCGCAAAAAAAG-TATATTTACATTTCTCCTAGCTTTTTATTAA------------
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-----------------------------------------TAAAATAAGAATACAATTACTTATTGATGTGCTAC----
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>chr3B_841
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--------------------------------------------------------------------------AATAGA
-------------------------AATAGGAGTACGAGGCGGAAACTAATTAACGGCGCCACGCGTATTAGTAACAGGT
TACTATAAAAGCGAGAGCCGCCCGCGCTGGCTATAAAAGCGAGCCTAACCCGCCTCAGATCGTCAGAGTAGTTGGAGTTG
AGTTGCTGCCTAGTGGCAAAAAATGGGATGGTCGGAATTCATAGGCAACGACGTCGCCACCGCCACACCGGCAGTGCGCA
ACCGTGTTGCTAGACGGGATGAATGGGGCCAAAGAACCACGGCCACCGGTGGTGACTCTTCAAAATCTGCAATTGGTGGC
CGCTTCCAGCGACTCAACGAGATCGGTGCAGGGGGCTTCGGTGTGGTTTACCGGGCGAGAGACCGCCGCACCGGCGAGAT
CGTCGCTATCAAGTGCCTCCGCACAAACA------AGTACGCCCACGACAACAGCGGCGACCGCTACCTCTCCGCCTTCA
TGGGCGAGGTCAGCGCCTTGGAGAAGTGCAACGGCCACCCGTCCATCGTGCAGCTGCGCGCCTCGGGCCAGCACGACGGC
GAGGCCTTCATCGCCATGGAGTTCGTCGGGCAGACCCTCAGGCACGTCATGAAGCATGTCCGTTTCGGGAGGAGACACAC
CGAGCTGGAGGTCCGCCTGATGATGAGGCAGCTCCTCTCCGGCGTGATGAGGATGAACCGTCTAGGTCTCATGCATCGTG
ACCTTAAGCCGGGGAATGTGCTCGTCGACGACCGCAAGAACCTCAAGATCTGTGACCTTGGGCTATCATGCAGCATGGCC
GATGGGCCGCCCTACTCAAACCACATCGGAACACAGGGTTACCGCGCACCAGAGCTCCTCCTAGGGTCCACGAATTACGA
CGAGCGCATCGACTCTTGGGCTCTTGGCGTCATGATGGCTGAGCTACTTGCTGGTCACCACCCTTTCTATGGGAAGACCG
ACATGGATCACCTCAGTGAGATTTTGGACCTTCTTGGTACGGCAGACATCAAAGAGTGGCCGGGCTATGATGGGCGGCAG
CTGCCCGGCGGATGGGCATTGCATAGCAGTTTGCGCTCCATGTTCCCATGCCCTGCCGATGCTAGGAGAAGATGCCGCCC
CCAACTTTCAGAAGCTGGTTTTGAGGTCTTGAGCGGCCTACTGCGATGCAACCCTGAAAAGAGACTCACGGCGAGGGCCG
CGCTGCGGCATAGGTGGTTTAAAGAGACCAACTTCAGGGCTGCAAAGAGCTGATTGGTTAACTTGCACAATCCATAATGT
AGCTGCGTCTGTGAAATGAATGTATGCAGAGACAGATTGTTGCAATTCACCTCATATGTAAGTTTGAAATGTATGGGCCT
GCCCACATATCAGTTTCTTGGAAAAATAATTAGCATGAGTGGATTTCCACCAACGTCTTTGTTTGCCCACTACTGTCCCT
CCTGCGTCAG--CCTAACCATCAGTACCGTCGCTCATGGTCGATGAAATTGCCGTGTGTCGCCTCGTCAAATAATGCCTG
TGTGATGGGCCCCTCCTATGCCGAGCCACTGGCACCCATCAAC-------------------------------------
-------------------------------------ATCCACCTCGGAATTGTACGCTCAACCT---------------
-----TCTTTTTCGACCAAATCAAATGCCATGAATCACGTTTCTAGGCGACTGACCATCAACAAAT-GGAAATGTACGCA
TCATATATGAA---------------------------------------TAAAGTTAGCAAATGAGTATGGCGTCTCCC
ACATGATAGTACTAGAATTTTTGTTTGCACCGAGTATGACCCATAATATGTTCAAACTACGCCGATGCACACATGGATAT
TTCTTGAGAATAATAAATGACAACCATGTTTCTACGAGATGCTACTGCGCTGCACAATCCTCCTAACATGTTATACCACT
TAAAGTACGTACCTG-----------CATATGGTCCACTCTACAGACTCTTGCAGTTTATCTCCAGTTCGACCTGAGCGA
GACGATCTTCTGCTTCTTCGAGGCCGCCCG--GCGGGCTGACCACCAAGATTTTATGTATGAAGTCTCACACCCTTCAAC
TAGTAAACTGCTGTCAAGCTAGCACCCAAACAACCAAAGTATACCTTGCCTCAATCACCATTATGACCATCCACCCCATC
ATCCTCTTGGTTC---------------------------------------------------------------
>chr1D_1175
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------------------------------------TTCGGCGTCGTCTACCGCGTGAGGGACCGGCGCACGGGAGAGAT
CGCGGCGATGAAGTGCCTGCGGACGAACGGCGCTCACGGCCGCGA---------CGTCGACCGCTACCTCTCCGACTTCG
CGAGCGAGGTCAGCGCCCTCGAGGCGTGCAGCGGCCACCCATCCATCGTGCAGCCGCGCGCCTCCGGCCACCTCCGCGGC
GAGGCCTTCCTCGCCATGGAGTTTGTGGGGCCAACTCTCAGACACGTCATCAAGCATGTCCGCTTCGGGAGGAGGCACAC
CGAGCTGGAGGTTCGCCTGCTCATGAGGCAGCTTTGCGCCGGCGCACGGAGGATGAATCGTCTCGGCCTCATGCACCGCG
ACCTCAAGCCGGAGAACGTGCTTGTCGACGGCCGTGGGAACCTCAAGATCTGCGACCTGGGGTTATCGTGCAGCATGGCC
GATGGGCCGCCTTACTCCAACCCCGTCGGGACACGGGGATACCGCGCGCCGGAGCTTCTCCTCGGATGCACGGATTATGA
TGAGCATGTCGACTCTTGGGCTCTTGGCGTCATGATGGCCGAGCTCCTCGCCGGCAAGCACCCTTTTCATGGGAGGTCAG
ACACGGAGCACCTCAGCGAGATCTTGGCCCTTCTTGGCATGGCTGACATCAAAGAGTGGTCGGGATACGACGGGCGCCGT
TTGCCCAGGGGATGCCAACCAGAAAGCTTTCTGCGCAACAAGTTCCCATGTCCCGCTGAGGCCAGGATCAAAGGCCCGCC
GACATTGTCGGAGGCTGGTTTCGAGGTCTTGAGCGGTCTTCTACGATGCAACCCGGAGAAGAGGCTCACGGCAGAGCAGG
CGCTCAAGCATCGGTGGTTCAAGGAAGCCAACCCGAGAGCTACAAGGAGCTGACCGGTGAAACAGCACAATC--------
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>chr1B_1181
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------------------------------------------GTCGTCTACCGGGCCAGGGACCGCCGCACCGGAGAGAT
CGTGGCGATGAAGTGTCTTCGTGCGAGCG------ACGACGGCGA---------CGGCGGCCGCTACCTCTCCGACTTCG
CGGCCGAGGTCAGTGCCCTCGAGGCCTGCAGCGGCCACCCGTCCATCGTGCAGCCGCGCGCCTCCGGCCACCTCGACGGC
GAGGCCTTCCTCGCCATGGAGTTTGTGGGGCCAACTCTCCGGTACGTCATGAAGCATGTCCGATACGGGAGGAGGCACAC
CGAGCTGGAGGTTCGCCTGCTCATGAGACAACTTTGCGCCGGCGTGAGGTGGATGAATCGCCTGGGCCTGATGCACCGTG
ACCTCAAGCCGGACAACGTGCTCGTCGACAGCCATGGGAACCTCAAGATCTGCGACCTAGGGCTGTCGTGCAGCATGGCT
GATGGGCCGCCCTACTCCAACCCCGTCGGGACACGGGGATACCGCGCGCCAGAGCTCCTTCTTGGGTGCACGGATTATGA
CGAGCATGTCGACTCGTGGGCTCTTGGCGTCATGATGGCTGAGCTCCTCGCCGGCAAGCACCCTTTCCATGGGAGGTCAG
ATACGGAGCACCTCAGCGAGATCTTGGACCTTCTCGGCACAGCTGACATCAAGGAGTGGTCAGGCTACGATGGACGCCGT
CTACCCGGCGGATGCCAACCAGGAAGCTTTCTGCGGAATAAGTTCCCTTGTCAGGATAAGGCCAGGATCAAAGGCCCGCC
GACATTGTCAGAGGCTGGTTTTGAGGTCTTGAGCGGTCTTCTACGATGCGACCCGGAGAAGAGGCTCACGGCGGAGCAAG
CGCTCAAGCATCGGTGGTTCAAGGAGGCCAACCCTAGGGCTACAAGGAGTTGATTGATGAAAGTTCACAATC--------
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>chr1B_1288
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---------------------------------------------------------------------------CTTCG
CGGCCGAGGTCAGCGCCCTCGAGGCGTGCAGCGGCCACCCGTCCATCGTGCAGCCGCGCGCCTCCGGCCACCTCGGCAGC
GAGGCCTTCCTCGCCATGGAGTTTGTGGGGCCAACTCTTAGGTACGTCATGAAGCATGTCCGATTCGGGAGGAGGCACAC
CGAGCTGGAGGTTCGCCTGCTGATGAGACAGCTTTGCGCCGGCGTGAGGTGGATGAATCGCCTCGGCCTGATGCACCGTG
ACCTCAAGCCGGACAACGTGCTTGTCGACAGCCATGGGAGCCTCAAGATCTGCGACCTAGGGTTGTCGTGCAGCATGGCC
GATGGGCCGCCCTACTCCAACCCCGTCGGGACACGGGGATACCGCGCGCCAGAGCTCCTTCTTGGATGCACGGATTACGA
CGAGCATGTCGACTCGTGGGCTCTTGGCGTCATGATGGCTGAGCTCCTCGCCGGCAAGCACCCTTTCCATGGGAGGTCAG
ATACGGAGCACCTCGGCGAGATCTTGGACCTTCTCGGCACAGCTGACATCAAAGAGTGGTCAGGCTACGATGGACGCCGT
CTGCCCGGCGGATGCCAACCTGGAAGCTTTCTGCGCAACAAGTTCCCATGTCCGGCTGAGGCCAGGATCAAAGGGCCGCC
GACATTGTCAGAGGCTGGTTTCGAGGTTTTGAGCGGTCTTCTACGATGCAACCCGGAGAAGAGGCTCACAGCGGAGCAAG
CGCTCAAGCATCGGTGGTTCAAGGAGGCCAACCCTAGGGCTGCAAAGAGTTGATTGATGAAAGTGGACAATCTACAATGC
ATCTGACTTGTGTAAATTA-------------------------------------------------------------
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----------------------------------------------------------------------------
>SNPs
------S--------------------S---S--S----------------------------S-------S--------
-----------------------------------------SSSSS----S-----------S-----------------
-----S--------------------S-----------------------------S--S----------------S---
--S------------S--------------------------S-------------------------------------
-------------------------S--S----------S----------------------------------------
---S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
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-----------------------S-----S--------------------------S-------S---S--SS-------
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------------------------------------------------------------S-------------------
-----------S---------S----------------------------------------------------S-----
--------------------S-------------------SSS-------------------------------------
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------------------------------------------------S------------------SS-SSSSSS----
------S-----------S-------------------S---------------------S-------------------
-----------------------------------------------------------------------------SS-
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---------------------S----------------------------------------------------------
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----------------S----S----------------------------------------------------------
-------S------------------------------------------------------------------------
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--------S---------------------------------------------------S-------------------
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-------------S------------------------------------------------------------------
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----------------------------------------------S---------------------------------
---------------------------------------------------S-------------------------S--
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-----------------------------------------------------S-----SS--S-------SSSSS-S-S
-S-SS-SSSSSS------------SSSS---S--------------S------S-----S---------S----------
SS-----S-------------------------S---SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------SS-----S-S-SS------------------
---------S--S------S--------------------------------S-----------S-S-------------
------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
-------------------------------------S--SS---------------------S-----------S----
-------------S--------------------S------S---------------------------S----------
-------SS--SS-SSSSSSSSSSSS----------------S----S-------S---S--------------------
-S------------SS-------S------SS-------------------------S-S-------S-----------S
--S-------------S-SS---------------------SS---------------S---S------------S----
-----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2892
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-----------------------------------------------------------------------GCTACAGAG
GCATTTCACCAC--------------------------------------------------------------------
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>reverse_5817
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--------------------------------------------------------CTTCCACTTATTTGCCGCCG----
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----------------------------------------------------------------------------
