Multiple sequence alignment - TraesCS3A01G026400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G026400 chr3A 100.000 2498 0 0 1 2498 13831553 13834050 0.000000e+00 4614.0
1 TraesCS3A01G026400 chr3A 79.084 655 86 34 942 1590 13818042 13818651 1.080000e-108 403.0
2 TraesCS3A01G026400 chr3A 78.056 638 92 30 957 1590 13811591 13812184 2.360000e-95 359.0
3 TraesCS3A01G026400 chr3A 86.957 69 7 2 1 69 642937311 642937245 2.660000e-10 76.8
4 TraesCS3A01G026400 chr3B 86.172 1186 72 47 386 1560 6950996 6952100 0.000000e+00 1197.0
5 TraesCS3A01G026400 chr3B 79.791 574 68 22 940 1498 6945335 6945875 8.440000e-100 374.0
6 TraesCS3A01G026400 chr3B 78.297 364 59 18 1836 2193 563685215 563684866 1.500000e-52 217.0
7 TraesCS3A01G026400 chr3B 78.202 367 49 12 3 364 6950665 6951005 3.260000e-49 206.0
8 TraesCS3A01G026400 chr3B 82.759 87 14 1 3 88 73613547 73613461 2.660000e-10 76.8
9 TraesCS3A01G026400 chr3D 90.155 904 67 12 739 1641 6461095 6460213 0.000000e+00 1157.0
10 TraesCS3A01G026400 chr3D 79.326 653 93 22 942 1590 6465949 6465335 1.070000e-113 420.0
11 TraesCS3A01G026400 chr3D 81.592 402 62 10 1805 2203 12193178 12193570 3.100000e-84 322.0
12 TraesCS3A01G026400 chr3D 81.340 418 46 20 1806 2203 587313082 587312677 6.710000e-81 311.0
13 TraesCS3A01G026400 chr3D 80.159 378 55 12 3 367 6461747 6461377 5.300000e-67 265.0
14 TraesCS3A01G026400 chr3D 80.352 341 14 17 383 711 6461392 6461093 2.520000e-50 209.0
15 TraesCS3A01G026400 chr5B 84.615 429 54 10 1793 2214 275708628 275708205 1.380000e-112 416.0
16 TraesCS3A01G026400 chr5B 80.952 378 52 16 1835 2203 635260269 635260635 5.260000e-72 281.0
17 TraesCS3A01G026400 chr5B 84.706 85 11 2 3 85 594753309 594753225 1.590000e-12 84.2
18 TraesCS3A01G026400 chr5B 97.059 34 1 0 2357 2390 589379847 589379814 9.650000e-05 58.4
19 TraesCS3A01G026400 chr2D 83.905 379 45 13 1832 2203 400494178 400493809 5.110000e-92 348.0
20 TraesCS3A01G026400 chr2D 81.796 401 53 13 1812 2201 432041580 432041189 4.010000e-83 318.0
21 TraesCS3A01G026400 chr2D 79.353 402 61 20 1812 2203 518258416 518258027 1.910000e-66 263.0
22 TraesCS3A01G026400 chr2D 78.472 144 28 2 2252 2392 567083198 567083341 9.510000e-15 91.6
23 TraesCS3A01G026400 chr7D 82.471 348 39 22 1863 2203 403802893 403802561 4.070000e-73 285.0
24 TraesCS3A01G026400 chr7D 96.154 52 2 0 2341 2392 595065600 595065651 4.430000e-13 86.1
25 TraesCS3A01G026400 chr5A 79.310 406 66 17 1805 2203 32671282 32671676 4.100000e-68 268.0
26 TraesCS3A01G026400 chr5D 84.615 182 25 3 2214 2393 5260357 5260537 7.100000e-41 178.0
27 TraesCS3A01G026400 chr5D 91.667 48 4 0 3 50 395526746 395526793 1.600000e-07 67.6
28 TraesCS3A01G026400 chr6D 89.535 86 7 2 1 85 456800486 456800570 9.450000e-20 108.0
29 TraesCS3A01G026400 chr6A 83.178 107 15 3 2286 2389 586664764 586664658 7.360000e-16 95.3
30 TraesCS3A01G026400 chr2A 85.393 89 9 4 2306 2391 747137164 747137077 3.420000e-14 89.8
31 TraesCS3A01G026400 chr7A 85.915 71 9 1 5 75 33509917 33509986 9.580000e-10 75.0
32 TraesCS3A01G026400 chr2B 91.667 48 4 0 2344 2391 746352924 746352877 1.600000e-07 67.6
33 TraesCS3A01G026400 chr4A 93.023 43 1 1 2293 2335 551128855 551128815 7.460000e-06 62.1
34 TraesCS3A01G026400 chrUn 86.792 53 5 1 2338 2390 79971214 79971164 9.650000e-05 58.4
35 TraesCS3A01G026400 chr6B 94.286 35 2 0 2359 2393 12977087 12977053 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G026400 chr3A 13831553 13834050 2497 False 4614.00 4614 100.000 1 2498 1 chr3A.!!$F3 2497
1 TraesCS3A01G026400 chr3A 13818042 13818651 609 False 403.00 403 79.084 942 1590 1 chr3A.!!$F2 648
2 TraesCS3A01G026400 chr3A 13811591 13812184 593 False 359.00 359 78.056 957 1590 1 chr3A.!!$F1 633
3 TraesCS3A01G026400 chr3B 6950665 6952100 1435 False 701.50 1197 82.187 3 1560 2 chr3B.!!$F2 1557
4 TraesCS3A01G026400 chr3B 6945335 6945875 540 False 374.00 374 79.791 940 1498 1 chr3B.!!$F1 558
5 TraesCS3A01G026400 chr3D 6460213 6465949 5736 True 512.75 1157 82.498 3 1641 4 chr3D.!!$R2 1638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 277 0.036732 TCAGCTGCGTTCCTTCCAAT 59.963 50.0 9.47 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 6795 0.032952 TTGGTCGACTCGTTGAAGGG 59.967 55.0 16.46 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 7.865706 ATTTGGCATAAAATACGAAGAGACT 57.134 32.000 0.00 0.00 0.00 3.24
85 86 9.472361 TGGCATAAAATACGAAGAGACTAATAC 57.528 33.333 0.00 0.00 0.00 1.89
91 92 9.713740 AAAATACGAAGAGACTAATACACTACG 57.286 33.333 0.00 0.00 0.00 3.51
94 95 5.005203 ACGAAGAGACTAATACACTACGACG 59.995 44.000 0.00 0.00 0.00 5.12
104 106 3.604875 ACACTACGACGGGAAAATGAT 57.395 42.857 0.00 0.00 0.00 2.45
114 116 5.686397 CGACGGGAAAATGATAGAGTAGTTC 59.314 44.000 0.00 0.00 0.00 3.01
123 125 3.952323 TGATAGAGTAGTTCGACCCAAGG 59.048 47.826 0.00 0.00 0.00 3.61
124 126 2.305858 AGAGTAGTTCGACCCAAGGT 57.694 50.000 0.00 0.00 39.44 3.50
125 127 1.893801 AGAGTAGTTCGACCCAAGGTG 59.106 52.381 0.00 0.00 35.25 4.00
126 128 0.320697 AGTAGTTCGACCCAAGGTGC 59.679 55.000 0.00 0.00 35.25 5.01
127 129 0.320697 GTAGTTCGACCCAAGGTGCT 59.679 55.000 0.00 0.00 35.25 4.40
128 130 0.320374 TAGTTCGACCCAAGGTGCTG 59.680 55.000 0.00 0.00 35.25 4.41
129 131 1.966451 GTTCGACCCAAGGTGCTGG 60.966 63.158 0.00 0.00 35.25 4.85
135 137 3.089838 CCAAGGTGCTGGGATGGA 58.910 61.111 0.00 0.00 32.82 3.41
136 138 1.616921 CCAAGGTGCTGGGATGGAT 59.383 57.895 0.00 0.00 32.82 3.41
137 139 0.466922 CCAAGGTGCTGGGATGGATC 60.467 60.000 0.00 0.00 32.82 3.36
138 140 0.816825 CAAGGTGCTGGGATGGATCG 60.817 60.000 0.00 0.00 0.00 3.69
139 141 1.987807 AAGGTGCTGGGATGGATCGG 61.988 60.000 0.00 0.00 0.00 4.18
140 142 2.592861 GTGCTGGGATGGATCGGC 60.593 66.667 0.00 0.00 0.00 5.54
141 143 3.089217 TGCTGGGATGGATCGGCA 61.089 61.111 0.00 0.00 0.00 5.69
142 144 2.592861 GCTGGGATGGATCGGCAC 60.593 66.667 0.00 0.00 0.00 5.01
143 145 3.112205 GCTGGGATGGATCGGCACT 62.112 63.158 0.00 0.00 0.00 4.40
144 146 1.758440 GCTGGGATGGATCGGCACTA 61.758 60.000 0.00 0.00 0.00 2.74
145 147 0.979665 CTGGGATGGATCGGCACTAT 59.020 55.000 0.00 0.00 0.00 2.12
146 148 2.179427 CTGGGATGGATCGGCACTATA 58.821 52.381 0.00 0.00 0.00 1.31
147 149 1.899814 TGGGATGGATCGGCACTATAC 59.100 52.381 0.00 0.00 0.00 1.47
148 150 1.135083 GGGATGGATCGGCACTATACG 60.135 57.143 0.00 0.00 0.00 3.06
157 159 1.403116 CGGCACTATACGTTGGTGACA 60.403 52.381 17.02 0.00 38.77 3.58
190 192 3.620929 ATGATCATCTGCGCATGTTTC 57.379 42.857 12.24 9.80 0.00 2.78
194 196 1.739466 TCATCTGCGCATGTTTCCTTC 59.261 47.619 12.24 0.00 0.00 3.46
196 198 1.512734 CTGCGCATGTTTCCTTCGC 60.513 57.895 12.24 4.90 45.23 4.70
197 199 1.915614 CTGCGCATGTTTCCTTCGCT 61.916 55.000 12.24 0.00 45.24 4.93
201 203 1.160137 GCATGTTTCCTTCGCTGACT 58.840 50.000 0.00 0.00 0.00 3.41
207 211 6.238484 GCATGTTTCCTTCGCTGACTATTTAT 60.238 38.462 0.00 0.00 0.00 1.40
213 217 9.607988 TTTCCTTCGCTGACTATTTATAATTCA 57.392 29.630 0.00 0.00 0.00 2.57
218 222 9.594478 TTCGCTGACTATTTATAATTCAGTTCA 57.406 29.630 12.13 5.50 36.79 3.18
219 223 9.594478 TCGCTGACTATTTATAATTCAGTTCAA 57.406 29.630 12.13 0.00 36.79 2.69
252 258 1.683011 GGTGTATTCAGCATGCCTGGT 60.683 52.381 15.66 0.94 42.05 4.00
270 276 0.884704 GTCAGCTGCGTTCCTTCCAA 60.885 55.000 9.47 0.00 0.00 3.53
271 277 0.036732 TCAGCTGCGTTCCTTCCAAT 59.963 50.000 9.47 0.00 0.00 3.16
292 298 9.479549 TCCAATAGAAGGCAATAAAGAGAAAAT 57.520 29.630 0.00 0.00 0.00 1.82
293 299 9.525409 CCAATAGAAGGCAATAAAGAGAAAATG 57.475 33.333 0.00 0.00 0.00 2.32
309 315 8.721019 AGAGAAAATGAATCAATCTCACTCTC 57.279 34.615 19.21 10.29 39.14 3.20
311 317 9.814899 GAGAAAATGAATCAATCTCACTCTCTA 57.185 33.333 14.88 0.00 37.17 2.43
340 346 5.828299 AAGTCAGAAATTCGTTGTGGAAA 57.172 34.783 0.00 0.00 31.37 3.13
341 347 5.828299 AGTCAGAAATTCGTTGTGGAAAA 57.172 34.783 0.00 0.00 31.37 2.29
368 374 9.911788 ACCATAGTCTTTGATCATACAATTTCT 57.088 29.630 0.00 0.00 0.00 2.52
392 398 5.975693 TTTTGAAGGGTGGTTGATCATAC 57.024 39.130 0.00 0.00 0.00 2.39
452 458 5.351458 AGAACATGTTGCTTGGACTTTTTC 58.649 37.500 17.58 0.00 0.00 2.29
453 459 5.127682 AGAACATGTTGCTTGGACTTTTTCT 59.872 36.000 17.58 0.00 0.00 2.52
454 460 4.936891 ACATGTTGCTTGGACTTTTTCTC 58.063 39.130 0.00 0.00 0.00 2.87
463 469 8.472007 TGCTTGGACTTTTTCTCCTTAAAATA 57.528 30.769 0.00 0.00 0.00 1.40
465 471 9.758651 GCTTGGACTTTTTCTCCTTAAAATAAA 57.241 29.630 0.00 0.00 0.00 1.40
511 524 4.286032 AGGCACTACCAGTTCAACTCATAA 59.714 41.667 0.00 0.00 43.14 1.90
512 525 4.631813 GGCACTACCAGTTCAACTCATAAG 59.368 45.833 0.00 0.00 38.86 1.73
517 530 8.283291 CACTACCAGTTCAACTCATAAGAAAAC 58.717 37.037 0.00 0.00 0.00 2.43
518 531 7.990886 ACTACCAGTTCAACTCATAAGAAAACA 59.009 33.333 0.00 0.00 0.00 2.83
519 532 7.264373 ACCAGTTCAACTCATAAGAAAACAG 57.736 36.000 0.00 0.00 0.00 3.16
520 533 6.828785 ACCAGTTCAACTCATAAGAAAACAGT 59.171 34.615 0.00 0.00 0.00 3.55
521 534 7.990886 ACCAGTTCAACTCATAAGAAAACAGTA 59.009 33.333 0.00 0.00 0.00 2.74
522 535 9.003658 CCAGTTCAACTCATAAGAAAACAGTAT 57.996 33.333 0.00 0.00 0.00 2.12
563 576 4.332828 ACTCTTTTTAATTACCTGGCGCT 58.667 39.130 7.64 0.00 0.00 5.92
564 577 4.395231 ACTCTTTTTAATTACCTGGCGCTC 59.605 41.667 7.64 0.00 0.00 5.03
565 578 4.585879 TCTTTTTAATTACCTGGCGCTCT 58.414 39.130 7.64 0.00 0.00 4.09
566 579 4.394920 TCTTTTTAATTACCTGGCGCTCTG 59.605 41.667 7.64 1.31 0.00 3.35
567 580 2.325583 TTAATTACCTGGCGCTCTGG 57.674 50.000 7.64 13.43 39.98 3.86
569 582 1.200519 AATTACCTGGCGCTCTGGTA 58.799 50.000 21.94 21.94 44.49 3.25
570 583 0.753262 ATTACCTGGCGCTCTGGTAG 59.247 55.000 23.39 8.99 46.18 3.18
571 584 1.327690 TTACCTGGCGCTCTGGTAGG 61.328 60.000 23.39 16.70 46.18 3.18
572 585 2.219449 TACCTGGCGCTCTGGTAGGA 62.219 60.000 21.94 9.75 44.49 2.94
573 586 2.790791 CCTGGCGCTCTGGTAGGAG 61.791 68.421 7.64 0.00 36.50 3.69
574 587 2.037367 TGGCGCTCTGGTAGGAGT 59.963 61.111 7.64 0.00 35.89 3.85
575 588 0.752009 CTGGCGCTCTGGTAGGAGTA 60.752 60.000 7.64 0.00 35.89 2.59
576 589 1.035932 TGGCGCTCTGGTAGGAGTAC 61.036 60.000 7.64 0.00 35.89 2.73
577 590 1.355916 GCGCTCTGGTAGGAGTACG 59.644 63.158 0.00 0.00 35.89 3.67
578 591 1.094073 GCGCTCTGGTAGGAGTACGA 61.094 60.000 0.00 0.00 35.89 3.43
588 601 4.954202 TGGTAGGAGTACGATTCAACTCAT 59.046 41.667 14.67 11.42 43.21 2.90
603 616 7.797038 TTCAACTCATCGATGATTGATCATT 57.203 32.000 31.23 17.33 46.84 2.57
604 617 8.891671 TTCAACTCATCGATGATTGATCATTA 57.108 30.769 31.23 22.12 46.84 1.90
605 618 9.498176 TTCAACTCATCGATGATTGATCATTAT 57.502 29.630 31.23 12.44 46.84 1.28
654 667 2.795329 CAGGCAGGTGTTAGTTGGAAT 58.205 47.619 0.00 0.00 0.00 3.01
655 668 2.749621 CAGGCAGGTGTTAGTTGGAATC 59.250 50.000 0.00 0.00 0.00 2.52
656 669 2.092323 GGCAGGTGTTAGTTGGAATCC 58.908 52.381 0.00 0.00 0.00 3.01
657 670 2.554344 GGCAGGTGTTAGTTGGAATCCA 60.554 50.000 0.00 0.00 0.00 3.41
658 671 3.356290 GCAGGTGTTAGTTGGAATCCAT 58.644 45.455 1.39 0.00 31.53 3.41
659 672 3.129287 GCAGGTGTTAGTTGGAATCCATG 59.871 47.826 1.39 0.00 31.53 3.66
660 673 3.696051 CAGGTGTTAGTTGGAATCCATGG 59.304 47.826 4.97 4.97 31.53 3.66
674 687 0.250727 CCATGGTCCTTCGTGGTTGT 60.251 55.000 2.57 0.00 38.63 3.32
690 703 3.103007 GGTTGTCGTGTTGTTGCTTAAC 58.897 45.455 0.00 0.00 0.00 2.01
736 749 0.687427 TCCATCGTCAGCTGGATCCA 60.687 55.000 15.27 15.27 37.71 3.41
749 762 4.837860 AGCTGGATCCAAACCACAATTAAA 59.162 37.500 17.00 0.00 33.57 1.52
790 803 1.591183 CCAAAACCCGCCAAGGATG 59.409 57.895 0.00 0.00 45.00 3.51
812 825 1.787847 GTCCATGAAACCGCGTGAG 59.212 57.895 4.92 0.00 0.00 3.51
837 850 6.652062 GCTCTCTCTACCACTACCTATAAGAC 59.348 46.154 0.00 0.00 0.00 3.01
841 854 5.061853 TCTACCACTACCTATAAGACGCAG 58.938 45.833 0.00 0.00 0.00 5.18
845 858 2.361438 ACTACCTATAAGACGCAGCACC 59.639 50.000 0.00 0.00 0.00 5.01
859 872 3.069980 GCACCCACTCGATCGAGCT 62.070 63.158 38.12 24.81 45.54 4.09
867 880 0.592637 CTCGATCGAGCTGCATCTCT 59.407 55.000 30.41 0.00 35.31 3.10
888 901 3.544684 TCGCCATTATTCAGCATTCACT 58.455 40.909 0.00 0.00 0.00 3.41
889 902 3.947196 TCGCCATTATTCAGCATTCACTT 59.053 39.130 0.00 0.00 0.00 3.16
890 903 4.035558 TCGCCATTATTCAGCATTCACTTC 59.964 41.667 0.00 0.00 0.00 3.01
891 904 4.614946 GCCATTATTCAGCATTCACTTCC 58.385 43.478 0.00 0.00 0.00 3.46
904 917 1.704628 TCACTTCCCTCCATTGCTTCA 59.295 47.619 0.00 0.00 0.00 3.02
906 919 3.094572 CACTTCCCTCCATTGCTTCATT 58.905 45.455 0.00 0.00 0.00 2.57
908 921 2.442236 TCCCTCCATTGCTTCATTCC 57.558 50.000 0.00 0.00 0.00 3.01
909 922 1.925255 TCCCTCCATTGCTTCATTCCT 59.075 47.619 0.00 0.00 0.00 3.36
910 923 2.029623 CCCTCCATTGCTTCATTCCTG 58.970 52.381 0.00 0.00 0.00 3.86
911 924 1.407979 CCTCCATTGCTTCATTCCTGC 59.592 52.381 0.00 0.00 0.00 4.85
912 925 2.376109 CTCCATTGCTTCATTCCTGCT 58.624 47.619 0.00 0.00 0.00 4.24
913 926 2.358267 CTCCATTGCTTCATTCCTGCTC 59.642 50.000 0.00 0.00 0.00 4.26
922 935 0.984961 CATTCCTGCTCCTCCCTCCA 60.985 60.000 0.00 0.00 0.00 3.86
947 960 3.181522 GCTTTCTTGCTGTCTCATCTTCG 60.182 47.826 0.00 0.00 0.00 3.79
955 969 3.497118 CTGTCTCATCTTCGTGTCTGAC 58.503 50.000 0.00 0.00 0.00 3.51
966 980 1.335051 CGTGTCTGACAGATCACACGT 60.335 52.381 27.41 2.13 44.32 4.49
973 987 0.388649 ACAGATCACACGTTCGGCTC 60.389 55.000 0.00 0.00 0.00 4.70
978 992 0.317160 TCACACGTTCGGCTCATTCT 59.683 50.000 0.00 0.00 0.00 2.40
1017 1035 3.140225 GATGTCGTCCGCCCTCTCC 62.140 68.421 0.00 0.00 0.00 3.71
1461 1485 1.534235 AGTCCTGCACTTCCTCGGT 60.534 57.895 0.00 0.00 26.56 4.69
1490 1514 0.593128 GGATCCGTTATGCACCATGC 59.407 55.000 0.00 0.00 45.29 4.06
1504 1528 3.863424 GCACCATGCTTCTTGATTGATTG 59.137 43.478 0.00 0.00 40.96 2.67
1507 1531 6.338146 CACCATGCTTCTTGATTGATTGATT 58.662 36.000 0.00 0.00 0.00 2.57
1508 1532 6.475727 CACCATGCTTCTTGATTGATTGATTC 59.524 38.462 0.00 0.00 0.00 2.52
1511 1535 7.710907 CCATGCTTCTTGATTGATTGATTCATT 59.289 33.333 0.00 0.00 33.34 2.57
1527 1551 9.800433 ATTGATTCATTATTCATTTGTACGCAA 57.200 25.926 0.00 0.00 0.00 4.85
1545 1569 3.946308 CAATGTATGCTCTCAGCTGTG 57.054 47.619 14.67 11.96 42.97 3.66
1546 1570 3.268330 CAATGTATGCTCTCAGCTGTGT 58.732 45.455 14.67 0.00 42.97 3.72
1547 1571 2.375173 TGTATGCTCTCAGCTGTGTG 57.625 50.000 14.67 13.30 42.97 3.82
1548 1572 1.620323 TGTATGCTCTCAGCTGTGTGT 59.380 47.619 14.67 0.20 42.97 3.72
1549 1573 2.825532 TGTATGCTCTCAGCTGTGTGTA 59.174 45.455 14.67 12.11 42.97 2.90
1550 1574 3.448660 TGTATGCTCTCAGCTGTGTGTAT 59.551 43.478 19.97 19.97 42.97 2.29
1551 1575 4.644685 TGTATGCTCTCAGCTGTGTGTATA 59.355 41.667 14.67 17.06 42.97 1.47
1552 1576 3.790152 TGCTCTCAGCTGTGTGTATAG 57.210 47.619 14.67 5.39 42.97 1.31
1553 1577 3.092301 TGCTCTCAGCTGTGTGTATAGT 58.908 45.455 14.67 0.00 42.97 2.12
1554 1578 3.129462 TGCTCTCAGCTGTGTGTATAGTC 59.871 47.826 14.67 0.00 42.97 2.59
1555 1579 3.380004 GCTCTCAGCTGTGTGTATAGTCT 59.620 47.826 14.67 0.00 38.45 3.24
1556 1580 4.576873 GCTCTCAGCTGTGTGTATAGTCTA 59.423 45.833 14.67 0.00 38.45 2.59
1559 1583 7.572353 GCTCTCAGCTGTGTGTATAGTCTATAC 60.572 44.444 19.29 19.29 38.82 1.47
1590 1614 7.657761 ACAATCCAACGGAGATATGTAATTCTC 59.342 37.037 0.00 0.00 38.10 2.87
1592 1616 8.651589 ATCCAACGGAGATATGTAATTCTCTA 57.348 34.615 0.00 0.00 38.71 2.43
1599 6695 9.233649 CGGAGATATGTAATTCTCTACTAGGTT 57.766 37.037 0.00 0.00 38.71 3.50
1621 6717 1.890876 TGAACCAAACTGACCATCCG 58.109 50.000 0.00 0.00 0.00 4.18
1641 6737 1.534163 GGCGTAAGTTTTGTGACCCTC 59.466 52.381 0.00 0.00 41.68 4.30
1642 6738 1.193874 GCGTAAGTTTTGTGACCCTCG 59.806 52.381 0.00 0.00 41.68 4.63
1643 6739 2.476821 CGTAAGTTTTGTGACCCTCGT 58.523 47.619 0.00 0.00 0.00 4.18
1644 6740 2.867975 CGTAAGTTTTGTGACCCTCGTT 59.132 45.455 0.00 0.00 0.00 3.85
1645 6741 3.302870 CGTAAGTTTTGTGACCCTCGTTG 60.303 47.826 0.00 0.00 0.00 4.10
1646 6742 2.413310 AGTTTTGTGACCCTCGTTGT 57.587 45.000 0.00 0.00 0.00 3.32
1647 6743 3.547054 AGTTTTGTGACCCTCGTTGTA 57.453 42.857 0.00 0.00 0.00 2.41
1648 6744 4.081322 AGTTTTGTGACCCTCGTTGTAT 57.919 40.909 0.00 0.00 0.00 2.29
1649 6745 3.813166 AGTTTTGTGACCCTCGTTGTATG 59.187 43.478 0.00 0.00 0.00 2.39
1650 6746 3.478857 TTTGTGACCCTCGTTGTATGT 57.521 42.857 0.00 0.00 0.00 2.29
1651 6747 4.603989 TTTGTGACCCTCGTTGTATGTA 57.396 40.909 0.00 0.00 0.00 2.29
1652 6748 3.861276 TGTGACCCTCGTTGTATGTAG 57.139 47.619 0.00 0.00 0.00 2.74
1653 6749 3.159472 TGTGACCCTCGTTGTATGTAGT 58.841 45.455 0.00 0.00 0.00 2.73
1654 6750 4.334552 TGTGACCCTCGTTGTATGTAGTA 58.665 43.478 0.00 0.00 0.00 1.82
1655 6751 4.951715 TGTGACCCTCGTTGTATGTAGTAT 59.048 41.667 0.00 0.00 0.00 2.12
1656 6752 5.066893 TGTGACCCTCGTTGTATGTAGTATC 59.933 44.000 0.00 0.00 0.00 2.24
1657 6753 5.298777 GTGACCCTCGTTGTATGTAGTATCT 59.701 44.000 0.00 0.00 0.00 1.98
1658 6754 5.889853 TGACCCTCGTTGTATGTAGTATCTT 59.110 40.000 0.00 0.00 0.00 2.40
1659 6755 6.379133 TGACCCTCGTTGTATGTAGTATCTTT 59.621 38.462 0.00 0.00 0.00 2.52
1660 6756 7.093640 TGACCCTCGTTGTATGTAGTATCTTTT 60.094 37.037 0.00 0.00 0.00 2.27
1661 6757 7.618137 ACCCTCGTTGTATGTAGTATCTTTTT 58.382 34.615 0.00 0.00 0.00 1.94
1693 6789 3.772619 GCCTATTTACTGGCGTCCA 57.227 52.632 0.00 0.00 39.71 4.02
1694 6790 2.256117 GCCTATTTACTGGCGTCCAT 57.744 50.000 0.00 0.00 39.71 3.41
1695 6791 2.143925 GCCTATTTACTGGCGTCCATC 58.856 52.381 0.00 0.00 39.71 3.51
1696 6792 2.224305 GCCTATTTACTGGCGTCCATCT 60.224 50.000 0.00 0.00 39.71 2.90
1697 6793 3.654414 CCTATTTACTGGCGTCCATCTC 58.346 50.000 0.00 0.00 30.82 2.75
1698 6794 2.225068 ATTTACTGGCGTCCATCTCG 57.775 50.000 0.00 0.00 30.82 4.04
1704 6800 2.586357 GCGTCCATCTCGCCCTTC 60.586 66.667 0.00 0.00 46.61 3.46
1705 6801 2.892640 CGTCCATCTCGCCCTTCA 59.107 61.111 0.00 0.00 0.00 3.02
1706 6802 1.218047 CGTCCATCTCGCCCTTCAA 59.782 57.895 0.00 0.00 0.00 2.69
1707 6803 1.084370 CGTCCATCTCGCCCTTCAAC 61.084 60.000 0.00 0.00 0.00 3.18
1708 6804 1.084370 GTCCATCTCGCCCTTCAACG 61.084 60.000 0.00 0.00 0.00 4.10
1709 6805 1.218047 CCATCTCGCCCTTCAACGA 59.782 57.895 0.00 0.00 36.73 3.85
1713 6809 2.257371 TCGCCCTTCAACGAGTCG 59.743 61.111 11.85 11.85 33.69 4.18
1714 6810 2.257371 CGCCCTTCAACGAGTCGA 59.743 61.111 21.50 0.00 0.00 4.20
1715 6811 2.087009 CGCCCTTCAACGAGTCGAC 61.087 63.158 21.50 7.70 0.00 4.20
1716 6812 1.737008 GCCCTTCAACGAGTCGACC 60.737 63.158 21.50 2.76 0.00 4.79
1717 6813 1.663739 CCCTTCAACGAGTCGACCA 59.336 57.895 21.50 0.00 0.00 4.02
1718 6814 0.032952 CCCTTCAACGAGTCGACCAA 59.967 55.000 21.50 7.05 0.00 3.67
1719 6815 1.539496 CCCTTCAACGAGTCGACCAAA 60.539 52.381 21.50 6.86 0.00 3.28
1720 6816 2.206750 CCTTCAACGAGTCGACCAAAA 58.793 47.619 21.50 5.13 0.00 2.44
1721 6817 2.806244 CCTTCAACGAGTCGACCAAAAT 59.194 45.455 21.50 0.00 0.00 1.82
1722 6818 3.363970 CCTTCAACGAGTCGACCAAAATG 60.364 47.826 21.50 5.81 0.00 2.32
1723 6819 2.139917 TCAACGAGTCGACCAAAATGG 58.860 47.619 21.50 0.00 45.02 3.16
1724 6820 2.139917 CAACGAGTCGACCAAAATGGA 58.860 47.619 21.50 0.00 40.96 3.41
1725 6821 1.792006 ACGAGTCGACCAAAATGGAC 58.208 50.000 21.50 0.00 40.96 4.02
1726 6822 1.076332 CGAGTCGACCAAAATGGACC 58.924 55.000 13.01 0.00 40.96 4.46
1727 6823 1.076332 GAGTCGACCAAAATGGACCG 58.924 55.000 13.01 6.51 40.96 4.79
1728 6824 0.321298 AGTCGACCAAAATGGACCGG 60.321 55.000 13.01 0.00 40.96 5.28
1729 6825 1.673009 TCGACCAAAATGGACCGGC 60.673 57.895 0.00 0.00 40.96 6.13
1730 6826 2.696759 CGACCAAAATGGACCGGCC 61.697 63.158 0.00 4.32 40.96 6.13
1731 6827 2.283604 ACCAAAATGGACCGGCCC 60.284 61.111 0.00 0.00 40.96 5.80
1732 6828 2.283532 CCAAAATGGACCGGCCCA 60.284 61.111 13.59 13.59 40.96 5.36
1733 6829 2.645192 CCAAAATGGACCGGCCCAC 61.645 63.158 13.47 0.00 40.96 4.61
1734 6830 2.675075 AAAATGGACCGGCCCACG 60.675 61.111 13.47 0.00 39.34 4.94
1756 6852 4.845580 CGGCAGGCGGAATGCTCT 62.846 66.667 8.89 0.00 45.43 4.09
1757 6853 2.439156 GGCAGGCGGAATGCTCTT 60.439 61.111 5.10 0.00 45.43 2.85
1758 6854 2.048603 GGCAGGCGGAATGCTCTTT 61.049 57.895 5.10 0.00 45.43 2.52
1759 6855 1.598701 GGCAGGCGGAATGCTCTTTT 61.599 55.000 5.10 0.00 45.43 2.27
1760 6856 0.244721 GCAGGCGGAATGCTCTTTTT 59.755 50.000 0.00 0.00 45.43 1.94
1868 6964 9.689976 TGTTGAACAAGTATATTTGGAATGTTG 57.310 29.630 12.09 0.00 32.32 3.33
1869 6965 9.906660 GTTGAACAAGTATATTTGGAATGTTGA 57.093 29.630 12.09 0.00 32.32 3.18
1893 6989 9.521841 TGAATAGGTATTAAACAATGTTGGACA 57.478 29.630 0.00 0.00 0.00 4.02
1896 6992 7.833285 AGGTATTAAACAATGTTGGACAAGT 57.167 32.000 0.00 0.00 0.00 3.16
1897 6993 8.927675 AGGTATTAAACAATGTTGGACAAGTA 57.072 30.769 0.00 0.00 0.00 2.24
1898 6994 9.528489 AGGTATTAAACAATGTTGGACAAGTAT 57.472 29.630 0.00 0.00 0.00 2.12
1927 7023 7.623268 AAAATTGCTGAATAAGTGTTCGAAC 57.377 32.000 21.42 21.42 0.00 3.95
1928 7024 5.940192 ATTGCTGAATAAGTGTTCGAACA 57.060 34.783 26.53 26.53 36.38 3.18
1929 7025 5.743026 TTGCTGAATAAGTGTTCGAACAA 57.257 34.783 31.20 17.49 41.21 2.83
1930 7026 5.940192 TGCTGAATAAGTGTTCGAACAAT 57.060 34.783 31.20 27.75 41.21 2.71
1931 7027 5.688823 TGCTGAATAAGTGTTCGAACAATG 58.311 37.500 31.20 17.94 41.21 2.82
1932 7028 5.238432 TGCTGAATAAGTGTTCGAACAATGT 59.762 36.000 31.20 21.28 41.21 2.71
1933 7029 6.142817 GCTGAATAAGTGTTCGAACAATGTT 58.857 36.000 31.20 25.66 41.21 2.71
1934 7030 6.086765 GCTGAATAAGTGTTCGAACAATGTTG 59.913 38.462 31.20 17.33 41.21 3.33
1935 7031 7.252965 TGAATAAGTGTTCGAACAATGTTGA 57.747 32.000 31.20 19.29 41.21 3.18
1936 7032 7.698628 TGAATAAGTGTTCGAACAATGTTGAA 58.301 30.769 31.20 14.65 41.21 2.69
1937 7033 7.642194 TGAATAAGTGTTCGAACAATGTTGAAC 59.358 33.333 31.20 22.45 41.21 3.18
1938 7034 3.935450 AGTGTTCGAACAATGTTGAACG 58.065 40.909 31.20 14.41 42.71 3.95
1939 7035 3.372822 AGTGTTCGAACAATGTTGAACGT 59.627 39.130 31.20 15.99 42.71 3.99
1940 7036 3.477090 GTGTTCGAACAATGTTGAACGTG 59.523 43.478 31.20 0.00 42.71 4.49
1941 7037 3.125487 TGTTCGAACAATGTTGAACGTGT 59.875 39.130 27.94 0.00 42.71 4.49
1942 7038 4.329256 TGTTCGAACAATGTTGAACGTGTA 59.671 37.500 27.94 0.00 42.71 2.90
1943 7039 5.006844 TGTTCGAACAATGTTGAACGTGTAT 59.993 36.000 27.94 0.00 42.71 2.29
1944 7040 6.200475 TGTTCGAACAATGTTGAACGTGTATA 59.800 34.615 27.94 0.00 42.71 1.47
1945 7041 6.954616 TCGAACAATGTTGAACGTGTATAT 57.045 33.333 2.20 0.00 34.34 0.86
1946 7042 8.374728 GTTCGAACAATGTTGAACGTGTATATA 58.625 33.333 23.12 0.00 32.38 0.86
1947 7043 8.463456 TCGAACAATGTTGAACGTGTATATAA 57.537 30.769 2.20 0.00 34.34 0.98
1948 7044 8.923683 TCGAACAATGTTGAACGTGTATATAAA 58.076 29.630 2.20 0.00 34.34 1.40
1949 7045 9.531412 CGAACAATGTTGAACGTGTATATAAAA 57.469 29.630 2.20 0.00 0.00 1.52
1999 7095 9.496873 AAATGATGAATTTTGTTGATCATGTGT 57.503 25.926 0.00 0.00 34.72 3.72
2069 7165 8.984891 TTGAAAAATGTTAGTCAAGCATATGG 57.015 30.769 4.56 0.00 0.00 2.74
2070 7166 7.546358 TGAAAAATGTTAGTCAAGCATATGGG 58.454 34.615 4.56 0.00 0.00 4.00
2071 7167 7.395772 TGAAAAATGTTAGTCAAGCATATGGGA 59.604 33.333 4.56 0.00 0.00 4.37
2072 7168 7.716799 AAAATGTTAGTCAAGCATATGGGAA 57.283 32.000 4.56 0.00 0.00 3.97
2073 7169 7.716799 AAATGTTAGTCAAGCATATGGGAAA 57.283 32.000 4.56 0.00 0.00 3.13
2074 7170 7.902920 AATGTTAGTCAAGCATATGGGAAAT 57.097 32.000 4.56 0.00 0.00 2.17
2075 7171 6.698008 TGTTAGTCAAGCATATGGGAAATG 57.302 37.500 4.56 0.00 0.00 2.32
2076 7172 6.186957 TGTTAGTCAAGCATATGGGAAATGT 58.813 36.000 4.56 0.00 0.00 2.71
2077 7173 6.663093 TGTTAGTCAAGCATATGGGAAATGTT 59.337 34.615 4.56 0.00 0.00 2.71
2078 7174 7.831690 TGTTAGTCAAGCATATGGGAAATGTTA 59.168 33.333 4.56 0.00 0.00 2.41
2079 7175 8.682710 GTTAGTCAAGCATATGGGAAATGTTAA 58.317 33.333 4.56 0.00 0.00 2.01
2080 7176 7.716799 AGTCAAGCATATGGGAAATGTTAAA 57.283 32.000 4.56 0.00 0.00 1.52
2081 7177 8.310122 AGTCAAGCATATGGGAAATGTTAAAT 57.690 30.769 4.56 0.00 0.00 1.40
2082 7178 8.199449 AGTCAAGCATATGGGAAATGTTAAATG 58.801 33.333 4.56 0.00 0.00 2.32
2083 7179 7.981225 GTCAAGCATATGGGAAATGTTAAATGT 59.019 33.333 4.56 0.00 0.00 2.71
2084 7180 7.980662 TCAAGCATATGGGAAATGTTAAATGTG 59.019 33.333 4.56 0.00 0.00 3.21
2085 7181 7.422465 AGCATATGGGAAATGTTAAATGTGT 57.578 32.000 4.56 0.00 0.00 3.72
2086 7182 8.532186 AGCATATGGGAAATGTTAAATGTGTA 57.468 30.769 4.56 0.00 0.00 2.90
2087 7183 9.146586 AGCATATGGGAAATGTTAAATGTGTAT 57.853 29.630 4.56 0.00 0.00 2.29
2217 7313 9.934190 ATTTTTAATCAAATGTTGAACAAGTGC 57.066 25.926 0.62 0.00 43.95 4.40
2218 7314 7.475771 TTTAATCAAATGTTGAACAAGTGCC 57.524 32.000 0.62 0.00 43.95 5.01
2219 7315 4.942761 ATCAAATGTTGAACAAGTGCCT 57.057 36.364 0.62 0.00 43.95 4.75
2220 7316 6.403866 AATCAAATGTTGAACAAGTGCCTA 57.596 33.333 0.62 0.00 43.95 3.93
2221 7317 5.437289 TCAAATGTTGAACAAGTGCCTAG 57.563 39.130 0.62 0.00 36.59 3.02
2222 7318 3.923017 AATGTTGAACAAGTGCCTAGC 57.077 42.857 0.62 0.00 0.00 3.42
2223 7319 1.225855 TGTTGAACAAGTGCCTAGCG 58.774 50.000 0.00 0.00 0.00 4.26
2224 7320 0.110192 GTTGAACAAGTGCCTAGCGC 60.110 55.000 0.00 0.00 39.59 5.92
2239 7335 3.869272 CGCAGCGTGCAATCTCCC 61.869 66.667 6.65 0.00 45.36 4.30
2240 7336 2.437359 GCAGCGTGCAATCTCCCT 60.437 61.111 0.00 0.00 44.26 4.20
2241 7337 2.758089 GCAGCGTGCAATCTCCCTG 61.758 63.158 0.00 0.00 44.26 4.45
2242 7338 2.110967 CAGCGTGCAATCTCCCTGG 61.111 63.158 0.00 0.00 0.00 4.45
2243 7339 2.268920 GCGTGCAATCTCCCTGGA 59.731 61.111 0.00 0.00 0.00 3.86
2244 7340 1.817099 GCGTGCAATCTCCCTGGAG 60.817 63.158 6.88 6.88 43.21 3.86
2251 7347 4.896979 TCTCCCTGGAGACAAGGG 57.103 61.111 11.88 4.91 45.26 3.95
2253 7349 0.252284 TCTCCCTGGAGACAAGGGAC 60.252 60.000 11.88 0.00 46.39 4.46
2254 7350 1.229529 TCCCTGGAGACAAGGGACC 60.230 63.158 9.64 0.00 46.39 4.46
2255 7351 2.660064 CCCTGGAGACAAGGGACCG 61.660 68.421 5.32 0.00 46.03 4.79
2256 7352 1.609501 CCTGGAGACAAGGGACCGA 60.610 63.158 0.00 0.00 42.06 4.69
2257 7353 0.978146 CCTGGAGACAAGGGACCGAT 60.978 60.000 0.00 0.00 42.06 4.18
2258 7354 0.461961 CTGGAGACAAGGGACCGATC 59.538 60.000 0.00 0.00 42.06 3.69
2259 7355 0.976073 TGGAGACAAGGGACCGATCC 60.976 60.000 0.00 0.00 40.56 3.36
2269 7365 0.315568 GGACCGATCCCTTCATCTCG 59.684 60.000 0.00 0.00 39.39 4.04
2270 7366 0.319125 GACCGATCCCTTCATCTCGC 60.319 60.000 0.00 0.00 0.00 5.03
2271 7367 1.372251 CCGATCCCTTCATCTCGCG 60.372 63.158 0.00 0.00 0.00 5.87
2272 7368 1.360551 CGATCCCTTCATCTCGCGT 59.639 57.895 5.77 0.00 0.00 6.01
2273 7369 0.249073 CGATCCCTTCATCTCGCGTT 60.249 55.000 5.77 0.00 0.00 4.84
2274 7370 1.001706 CGATCCCTTCATCTCGCGTTA 60.002 52.381 5.77 0.00 0.00 3.18
2275 7371 2.395654 GATCCCTTCATCTCGCGTTAC 58.604 52.381 5.77 0.00 0.00 2.50
2276 7372 0.458669 TCCCTTCATCTCGCGTTACC 59.541 55.000 5.77 0.00 0.00 2.85
2277 7373 0.460311 CCCTTCATCTCGCGTTACCT 59.540 55.000 5.77 0.00 0.00 3.08
2278 7374 1.536284 CCCTTCATCTCGCGTTACCTC 60.536 57.143 5.77 0.00 0.00 3.85
2279 7375 1.405821 CCTTCATCTCGCGTTACCTCT 59.594 52.381 5.77 0.00 0.00 3.69
2280 7376 2.455032 CTTCATCTCGCGTTACCTCTG 58.545 52.381 5.77 0.00 0.00 3.35
2281 7377 0.100682 TCATCTCGCGTTACCTCTGC 59.899 55.000 5.77 0.00 0.00 4.26
2282 7378 0.101399 CATCTCGCGTTACCTCTGCT 59.899 55.000 5.77 0.00 0.00 4.24
2283 7379 0.382515 ATCTCGCGTTACCTCTGCTC 59.617 55.000 5.77 0.00 0.00 4.26
2284 7380 1.226717 CTCGCGTTACCTCTGCTCC 60.227 63.158 5.77 0.00 0.00 4.70
2285 7381 1.658686 CTCGCGTTACCTCTGCTCCT 61.659 60.000 5.77 0.00 0.00 3.69
2286 7382 1.215647 CGCGTTACCTCTGCTCCTT 59.784 57.895 0.00 0.00 0.00 3.36
2287 7383 0.389948 CGCGTTACCTCTGCTCCTTT 60.390 55.000 0.00 0.00 0.00 3.11
2288 7384 1.809684 GCGTTACCTCTGCTCCTTTT 58.190 50.000 0.00 0.00 0.00 2.27
2289 7385 2.673043 CGCGTTACCTCTGCTCCTTTTA 60.673 50.000 0.00 0.00 0.00 1.52
2290 7386 2.671888 GCGTTACCTCTGCTCCTTTTAC 59.328 50.000 0.00 0.00 0.00 2.01
2291 7387 2.921754 CGTTACCTCTGCTCCTTTTACG 59.078 50.000 0.00 0.00 0.00 3.18
2292 7388 3.366679 CGTTACCTCTGCTCCTTTTACGA 60.367 47.826 0.00 0.00 0.00 3.43
2293 7389 4.677250 CGTTACCTCTGCTCCTTTTACGAT 60.677 45.833 0.00 0.00 0.00 3.73
2294 7390 3.983044 ACCTCTGCTCCTTTTACGATT 57.017 42.857 0.00 0.00 0.00 3.34
2295 7391 6.335777 GTTACCTCTGCTCCTTTTACGATTA 58.664 40.000 0.00 0.00 0.00 1.75
2296 7392 5.615925 ACCTCTGCTCCTTTTACGATTAT 57.384 39.130 0.00 0.00 0.00 1.28
2297 7393 5.360591 ACCTCTGCTCCTTTTACGATTATG 58.639 41.667 0.00 0.00 0.00 1.90
2298 7394 4.212214 CCTCTGCTCCTTTTACGATTATGC 59.788 45.833 0.00 0.00 0.00 3.14
2299 7395 3.802139 TCTGCTCCTTTTACGATTATGCG 59.198 43.478 0.00 0.00 37.29 4.73
2300 7396 2.286833 TGCTCCTTTTACGATTATGCGC 59.713 45.455 0.00 0.00 33.86 6.09
2301 7397 2.659291 GCTCCTTTTACGATTATGCGCG 60.659 50.000 0.00 0.00 33.86 6.86
2302 7398 1.259507 TCCTTTTACGATTATGCGCGC 59.740 47.619 27.26 27.26 33.86 6.86
2303 7399 1.004398 CCTTTTACGATTATGCGCGCA 60.004 47.619 38.27 38.27 33.86 6.09
2304 7400 2.349438 CCTTTTACGATTATGCGCGCAT 60.349 45.455 43.68 43.68 40.19 4.73
2305 7401 2.292948 TTTACGATTATGCGCGCATG 57.707 45.000 46.79 34.67 37.82 4.06
2306 7402 1.492720 TTACGATTATGCGCGCATGA 58.507 45.000 46.79 41.44 37.82 3.07
2307 7403 1.492720 TACGATTATGCGCGCATGAA 58.507 45.000 46.79 35.37 37.82 2.57
2308 7404 0.867746 ACGATTATGCGCGCATGAAT 59.132 45.000 46.79 37.50 37.82 2.57
2309 7405 1.244352 CGATTATGCGCGCATGAATG 58.756 50.000 46.79 32.80 37.82 2.67
2310 7406 1.609932 GATTATGCGCGCATGAATGG 58.390 50.000 46.79 0.23 37.82 3.16
2311 7407 0.241749 ATTATGCGCGCATGAATGGG 59.758 50.000 46.79 0.00 42.88 4.00
2333 7429 3.918544 CCCAATACGGCACAAGGG 58.081 61.111 0.00 0.00 0.00 3.95
2334 7430 1.752694 CCCAATACGGCACAAGGGG 60.753 63.158 0.00 0.00 32.59 4.79
2335 7431 1.301623 CCAATACGGCACAAGGGGA 59.698 57.895 0.00 0.00 0.00 4.81
2336 7432 0.748005 CCAATACGGCACAAGGGGAG 60.748 60.000 0.00 0.00 0.00 4.30
2337 7433 0.251916 CAATACGGCACAAGGGGAGA 59.748 55.000 0.00 0.00 0.00 3.71
2338 7434 0.988832 AATACGGCACAAGGGGAGAA 59.011 50.000 0.00 0.00 0.00 2.87
2339 7435 0.988832 ATACGGCACAAGGGGAGAAA 59.011 50.000 0.00 0.00 0.00 2.52
2340 7436 0.766131 TACGGCACAAGGGGAGAAAA 59.234 50.000 0.00 0.00 0.00 2.29
2341 7437 0.112412 ACGGCACAAGGGGAGAAAAT 59.888 50.000 0.00 0.00 0.00 1.82
2342 7438 0.527565 CGGCACAAGGGGAGAAAATG 59.472 55.000 0.00 0.00 0.00 2.32
2343 7439 0.247460 GGCACAAGGGGAGAAAATGC 59.753 55.000 0.00 0.00 0.00 3.56
2344 7440 1.260544 GCACAAGGGGAGAAAATGCT 58.739 50.000 0.00 0.00 0.00 3.79
2345 7441 1.620323 GCACAAGGGGAGAAAATGCTT 59.380 47.619 0.00 0.00 0.00 3.91
2346 7442 2.353109 GCACAAGGGGAGAAAATGCTTC 60.353 50.000 0.00 0.00 0.00 3.86
2347 7443 2.892852 CACAAGGGGAGAAAATGCTTCA 59.107 45.455 0.00 0.00 0.00 3.02
2348 7444 3.057033 CACAAGGGGAGAAAATGCTTCAG 60.057 47.826 0.00 0.00 0.00 3.02
2349 7445 1.844687 AGGGGAGAAAATGCTTCAGC 58.155 50.000 0.00 0.00 42.50 4.26
2350 7446 0.453390 GGGGAGAAAATGCTTCAGCG 59.547 55.000 0.00 0.00 45.83 5.18
2351 7447 1.453155 GGGAGAAAATGCTTCAGCGA 58.547 50.000 0.00 0.00 45.83 4.93
2352 7448 1.399791 GGGAGAAAATGCTTCAGCGAG 59.600 52.381 0.00 0.00 45.83 5.03
2353 7449 2.350522 GGAGAAAATGCTTCAGCGAGA 58.649 47.619 0.00 0.00 45.83 4.04
2354 7450 2.351111 GGAGAAAATGCTTCAGCGAGAG 59.649 50.000 0.00 0.00 45.83 3.20
2355 7451 2.999355 GAGAAAATGCTTCAGCGAGAGT 59.001 45.455 0.00 0.00 45.83 3.24
2356 7452 3.406764 AGAAAATGCTTCAGCGAGAGTT 58.593 40.909 0.00 0.00 45.83 3.01
2357 7453 3.188048 AGAAAATGCTTCAGCGAGAGTTG 59.812 43.478 0.00 0.00 45.83 3.16
2358 7454 0.801251 AATGCTTCAGCGAGAGTTGC 59.199 50.000 0.00 0.00 45.83 4.17
2359 7455 0.036577 ATGCTTCAGCGAGAGTTGCT 60.037 50.000 0.00 0.00 45.83 3.91
2360 7456 0.603065 TGCTTCAGCGAGAGTTGCTA 59.397 50.000 0.00 0.00 45.83 3.49
2361 7457 0.995728 GCTTCAGCGAGAGTTGCTAC 59.004 55.000 0.00 0.00 41.72 3.58
2362 7458 1.634702 CTTCAGCGAGAGTTGCTACC 58.365 55.000 0.00 0.00 41.72 3.18
2363 7459 0.109272 TTCAGCGAGAGTTGCTACCG 60.109 55.000 0.00 0.00 41.72 4.02
2364 7460 1.213013 CAGCGAGAGTTGCTACCGT 59.787 57.895 0.00 0.00 41.72 4.83
2365 7461 0.798771 CAGCGAGAGTTGCTACCGTC 60.799 60.000 0.00 0.00 41.72 4.79
2366 7462 0.961358 AGCGAGAGTTGCTACCGTCT 60.961 55.000 0.00 0.00 41.87 4.18
2367 7463 0.523757 GCGAGAGTTGCTACCGTCTC 60.524 60.000 7.27 7.27 33.46 3.36
2368 7464 3.607777 GAGAGTTGCTACCGTCTCG 57.392 57.895 2.70 0.00 32.90 4.04
2369 7465 0.523757 GAGAGTTGCTACCGTCTCGC 60.524 60.000 2.70 0.00 32.90 5.03
2370 7466 0.961358 AGAGTTGCTACCGTCTCGCT 60.961 55.000 0.00 0.00 32.90 4.93
2371 7467 0.109226 GAGTTGCTACCGTCTCGCTT 60.109 55.000 0.00 0.00 0.00 4.68
2372 7468 1.131883 GAGTTGCTACCGTCTCGCTTA 59.868 52.381 0.00 0.00 0.00 3.09
2373 7469 1.542915 AGTTGCTACCGTCTCGCTTAA 59.457 47.619 0.00 0.00 0.00 1.85
2374 7470 2.165845 AGTTGCTACCGTCTCGCTTAAT 59.834 45.455 0.00 0.00 0.00 1.40
2375 7471 2.203800 TGCTACCGTCTCGCTTAATG 57.796 50.000 0.00 0.00 0.00 1.90
2376 7472 0.853419 GCTACCGTCTCGCTTAATGC 59.147 55.000 0.00 0.00 38.57 3.56
2387 7483 2.844811 GCTTAATGCGAGACATAGCG 57.155 50.000 0.00 0.00 38.34 4.26
2395 7491 1.596703 CGAGACATAGCGCTCGTATG 58.403 55.000 16.34 15.78 46.43 2.39
2396 7492 1.069838 CGAGACATAGCGCTCGTATGT 60.070 52.381 21.20 21.20 46.43 2.29
2397 7493 2.157085 CGAGACATAGCGCTCGTATGTA 59.843 50.000 21.12 0.00 46.43 2.29
2398 7494 3.181519 CGAGACATAGCGCTCGTATGTAT 60.182 47.826 21.12 18.83 46.43 2.29
2399 7495 4.669453 CGAGACATAGCGCTCGTATGTATT 60.669 45.833 21.12 13.87 46.43 1.89
2400 7496 5.122512 AGACATAGCGCTCGTATGTATTT 57.877 39.130 21.12 9.71 40.47 1.40
2401 7497 6.250344 AGACATAGCGCTCGTATGTATTTA 57.750 37.500 21.12 0.00 40.47 1.40
2402 7498 6.084925 AGACATAGCGCTCGTATGTATTTAC 58.915 40.000 21.12 10.64 40.47 2.01
2403 7499 5.159209 ACATAGCGCTCGTATGTATTTACC 58.841 41.667 20.03 0.00 38.96 2.85
2404 7500 3.720949 AGCGCTCGTATGTATTTACCA 57.279 42.857 2.64 0.00 0.00 3.25
2405 7501 3.378339 AGCGCTCGTATGTATTTACCAC 58.622 45.455 2.64 0.00 0.00 4.16
2406 7502 3.067742 AGCGCTCGTATGTATTTACCACT 59.932 43.478 2.64 0.00 0.00 4.00
2407 7503 3.800506 GCGCTCGTATGTATTTACCACTT 59.199 43.478 0.00 0.00 0.00 3.16
2408 7504 4.977963 GCGCTCGTATGTATTTACCACTTA 59.022 41.667 0.00 0.00 0.00 2.24
2409 7505 5.459762 GCGCTCGTATGTATTTACCACTTAA 59.540 40.000 0.00 0.00 0.00 1.85
2410 7506 6.145048 GCGCTCGTATGTATTTACCACTTAAT 59.855 38.462 0.00 0.00 0.00 1.40
2411 7507 7.306983 GCGCTCGTATGTATTTACCACTTAATT 60.307 37.037 0.00 0.00 0.00 1.40
2412 7508 8.545420 CGCTCGTATGTATTTACCACTTAATTT 58.455 33.333 0.00 0.00 0.00 1.82
2432 7528 3.363341 TTTTTGGAACGAATGAGTGGC 57.637 42.857 0.00 0.00 0.00 5.01
2433 7529 1.243902 TTTGGAACGAATGAGTGGCC 58.756 50.000 0.00 0.00 0.00 5.36
2434 7530 0.608035 TTGGAACGAATGAGTGGCCC 60.608 55.000 0.00 0.00 0.00 5.80
2435 7531 2.106683 GGAACGAATGAGTGGCCCG 61.107 63.158 0.00 0.00 0.00 6.13
2436 7532 1.375523 GAACGAATGAGTGGCCCGT 60.376 57.895 0.00 0.00 34.74 5.28
2437 7533 0.108520 GAACGAATGAGTGGCCCGTA 60.109 55.000 0.00 0.00 32.81 4.02
2438 7534 0.390735 AACGAATGAGTGGCCCGTAC 60.391 55.000 0.00 0.00 32.81 3.67
2439 7535 1.876714 CGAATGAGTGGCCCGTACG 60.877 63.158 8.69 8.69 0.00 3.67
2440 7536 1.514087 GAATGAGTGGCCCGTACGA 59.486 57.895 18.76 0.00 0.00 3.43
2441 7537 0.104304 GAATGAGTGGCCCGTACGAT 59.896 55.000 18.76 0.00 0.00 3.73
2442 7538 0.179084 AATGAGTGGCCCGTACGATG 60.179 55.000 18.76 8.67 0.00 3.84
2443 7539 1.040893 ATGAGTGGCCCGTACGATGA 61.041 55.000 18.76 0.00 0.00 2.92
2444 7540 1.040893 TGAGTGGCCCGTACGATGAT 61.041 55.000 18.76 0.00 0.00 2.45
2445 7541 0.597637 GAGTGGCCCGTACGATGATG 60.598 60.000 18.76 0.00 0.00 3.07
2446 7542 1.594293 GTGGCCCGTACGATGATGG 60.594 63.158 18.76 10.11 0.00 3.51
2449 7545 3.138625 CCCGTACGATGATGGGCT 58.861 61.111 18.76 0.00 38.85 5.19
2450 7546 1.300931 CCCGTACGATGATGGGCTG 60.301 63.158 18.76 0.00 38.85 4.85
2451 7547 1.300931 CCGTACGATGATGGGCTGG 60.301 63.158 18.76 0.00 0.00 4.85
2452 7548 1.739667 CGTACGATGATGGGCTGGA 59.260 57.895 10.44 0.00 0.00 3.86
2453 7549 0.319040 CGTACGATGATGGGCTGGAG 60.319 60.000 10.44 0.00 0.00 3.86
2454 7550 0.034059 GTACGATGATGGGCTGGAGG 59.966 60.000 0.00 0.00 0.00 4.30
2455 7551 0.105709 TACGATGATGGGCTGGAGGA 60.106 55.000 0.00 0.00 0.00 3.71
2456 7552 0.765903 ACGATGATGGGCTGGAGGAT 60.766 55.000 0.00 0.00 0.00 3.24
2457 7553 1.269958 CGATGATGGGCTGGAGGATA 58.730 55.000 0.00 0.00 0.00 2.59
2458 7554 1.206610 CGATGATGGGCTGGAGGATAG 59.793 57.143 0.00 0.00 0.00 2.08
2459 7555 1.558756 GATGATGGGCTGGAGGATAGG 59.441 57.143 0.00 0.00 0.00 2.57
2460 7556 0.268869 TGATGGGCTGGAGGATAGGT 59.731 55.000 0.00 0.00 0.00 3.08
2461 7557 0.689623 GATGGGCTGGAGGATAGGTG 59.310 60.000 0.00 0.00 0.00 4.00
2462 7558 0.769776 ATGGGCTGGAGGATAGGTGG 60.770 60.000 0.00 0.00 0.00 4.61
2463 7559 2.150051 GGGCTGGAGGATAGGTGGG 61.150 68.421 0.00 0.00 0.00 4.61
2464 7560 2.823758 GGCTGGAGGATAGGTGGGC 61.824 68.421 0.00 0.00 0.00 5.36
2465 7561 2.823758 GCTGGAGGATAGGTGGGCC 61.824 68.421 0.00 0.00 0.00 5.80
2466 7562 2.445845 TGGAGGATAGGTGGGCCG 60.446 66.667 0.00 0.00 40.50 6.13
2467 7563 2.122989 GGAGGATAGGTGGGCCGA 60.123 66.667 0.00 0.00 40.50 5.54
2468 7564 1.764854 GGAGGATAGGTGGGCCGAA 60.765 63.158 0.00 0.00 40.50 4.30
2469 7565 1.446366 GAGGATAGGTGGGCCGAAC 59.554 63.158 0.00 0.00 40.50 3.95
2470 7566 2.041206 GAGGATAGGTGGGCCGAACC 62.041 65.000 16.69 16.69 40.50 3.62
2488 7584 3.460144 CGAAGGACGACGGCTTTC 58.540 61.111 15.14 15.14 45.77 2.62
2489 7585 2.434134 CGAAGGACGACGGCTTTCG 61.434 63.158 29.54 29.54 45.77 3.46
2490 7586 2.727684 GAAGGACGACGGCTTTCGC 61.728 63.158 10.01 0.00 43.06 4.70
2491 7587 3.222354 AAGGACGACGGCTTTCGCT 62.222 57.895 0.00 0.00 43.06 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.197282 CGTCGTAGTGTATTAGTCTCTTCGTA 59.803 42.308 0.00 0.00 0.00 3.43
80 81 6.206395 TCATTTTCCCGTCGTAGTGTATTA 57.794 37.500 0.00 0.00 0.00 0.98
85 86 4.928601 TCTATCATTTTCCCGTCGTAGTG 58.071 43.478 0.00 0.00 0.00 2.74
91 92 5.686397 CGAACTACTCTATCATTTTCCCGTC 59.314 44.000 0.00 0.00 0.00 4.79
94 95 5.984323 GGTCGAACTACTCTATCATTTTCCC 59.016 44.000 0.00 0.00 0.00 3.97
104 106 3.087031 CACCTTGGGTCGAACTACTCTA 58.913 50.000 0.00 0.00 31.02 2.43
123 125 2.592861 GCCGATCCATCCCAGCAC 60.593 66.667 0.00 0.00 0.00 4.40
124 126 3.089217 TGCCGATCCATCCCAGCA 61.089 61.111 0.00 0.00 0.00 4.41
125 127 1.758440 TAGTGCCGATCCATCCCAGC 61.758 60.000 0.00 0.00 0.00 4.85
126 128 0.979665 ATAGTGCCGATCCATCCCAG 59.020 55.000 0.00 0.00 0.00 4.45
127 129 1.899814 GTATAGTGCCGATCCATCCCA 59.100 52.381 0.00 0.00 0.00 4.37
128 130 1.135083 CGTATAGTGCCGATCCATCCC 60.135 57.143 0.00 0.00 0.00 3.85
129 131 1.544691 ACGTATAGTGCCGATCCATCC 59.455 52.381 0.00 0.00 0.00 3.51
130 132 2.987149 CAACGTATAGTGCCGATCCATC 59.013 50.000 0.00 0.00 0.00 3.51
131 133 2.288825 CCAACGTATAGTGCCGATCCAT 60.289 50.000 0.00 0.00 0.00 3.41
132 134 1.067974 CCAACGTATAGTGCCGATCCA 59.932 52.381 0.00 0.00 0.00 3.41
133 135 1.068127 ACCAACGTATAGTGCCGATCC 59.932 52.381 0.00 0.00 0.00 3.36
134 136 2.124903 CACCAACGTATAGTGCCGATC 58.875 52.381 0.00 0.00 0.00 3.69
135 137 1.752498 TCACCAACGTATAGTGCCGAT 59.248 47.619 7.46 0.00 0.00 4.18
136 138 1.135315 GTCACCAACGTATAGTGCCGA 60.135 52.381 7.46 0.00 0.00 5.54
137 139 1.274596 GTCACCAACGTATAGTGCCG 58.725 55.000 7.46 0.00 0.00 5.69
138 140 2.373540 TGTCACCAACGTATAGTGCC 57.626 50.000 7.46 0.00 0.00 5.01
139 141 4.084537 GCATATGTCACCAACGTATAGTGC 60.085 45.833 4.29 4.61 37.88 4.40
140 142 4.148174 CGCATATGTCACCAACGTATAGTG 59.852 45.833 4.29 6.26 37.88 2.74
141 143 4.037089 TCGCATATGTCACCAACGTATAGT 59.963 41.667 4.29 0.00 37.88 2.12
142 144 4.542735 TCGCATATGTCACCAACGTATAG 58.457 43.478 4.29 0.00 37.88 1.31
143 145 4.571372 TCGCATATGTCACCAACGTATA 57.429 40.909 4.29 0.00 37.88 1.47
144 146 3.446310 TCGCATATGTCACCAACGTAT 57.554 42.857 4.29 0.00 40.10 3.06
145 147 2.943449 TCGCATATGTCACCAACGTA 57.057 45.000 4.29 0.00 33.91 3.57
146 148 1.933181 CATCGCATATGTCACCAACGT 59.067 47.619 4.29 0.00 0.00 3.99
147 149 2.200899 TCATCGCATATGTCACCAACG 58.799 47.619 4.29 0.00 0.00 4.10
148 150 4.818534 AATCATCGCATATGTCACCAAC 57.181 40.909 4.29 0.00 0.00 3.77
190 192 8.594881 ACTGAATTATAAATAGTCAGCGAAGG 57.405 34.615 14.14 0.00 0.00 3.46
225 229 4.559153 GCATGCTGAATACACCAACTTTT 58.441 39.130 11.37 0.00 0.00 2.27
229 233 2.094675 AGGCATGCTGAATACACCAAC 58.905 47.619 18.92 0.00 0.00 3.77
232 237 1.027357 CCAGGCATGCTGAATACACC 58.973 55.000 18.92 0.00 0.00 4.16
240 245 2.045242 AGCTGACCAGGCATGCTG 60.045 61.111 18.92 13.33 32.32 4.41
252 258 0.036732 ATTGGAAGGAACGCAGCTGA 59.963 50.000 20.43 0.00 0.00 4.26
276 282 9.813446 AGATTGATTCATTTTCTCTTTATTGCC 57.187 29.630 0.00 0.00 0.00 4.52
311 317 9.840427 CCACAACGAATTTCTGACTTTATTTAT 57.160 29.630 0.00 0.00 0.00 1.40
312 318 9.058174 TCCACAACGAATTTCTGACTTTATTTA 57.942 29.630 0.00 0.00 0.00 1.40
313 319 7.936584 TCCACAACGAATTTCTGACTTTATTT 58.063 30.769 0.00 0.00 0.00 1.40
314 320 7.504924 TCCACAACGAATTTCTGACTTTATT 57.495 32.000 0.00 0.00 0.00 1.40
369 375 5.835819 TGTATGATCAACCACCCTTCAAAAA 59.164 36.000 0.00 0.00 0.00 1.94
370 376 5.389520 TGTATGATCAACCACCCTTCAAAA 58.610 37.500 0.00 0.00 0.00 2.44
371 377 4.991776 TGTATGATCAACCACCCTTCAAA 58.008 39.130 0.00 0.00 0.00 2.69
372 378 4.649267 TGTATGATCAACCACCCTTCAA 57.351 40.909 0.00 0.00 0.00 2.69
373 379 4.649267 TTGTATGATCAACCACCCTTCA 57.351 40.909 0.00 0.00 0.00 3.02
374 380 6.530019 AATTTGTATGATCAACCACCCTTC 57.470 37.500 0.00 0.00 0.00 3.46
375 381 8.608185 ATTAATTTGTATGATCAACCACCCTT 57.392 30.769 0.00 0.00 0.00 3.95
376 382 8.608185 AATTAATTTGTATGATCAACCACCCT 57.392 30.769 0.00 0.00 0.00 4.34
404 410 8.874744 TCTGGATGGGTATATGTACTTAGTAC 57.125 38.462 14.99 14.99 39.24 2.73
407 413 8.524487 GTTCTCTGGATGGGTATATGTACTTAG 58.476 40.741 0.00 0.00 0.00 2.18
408 414 8.008332 TGTTCTCTGGATGGGTATATGTACTTA 58.992 37.037 0.00 0.00 0.00 2.24
409 415 6.844388 TGTTCTCTGGATGGGTATATGTACTT 59.156 38.462 0.00 0.00 0.00 2.24
411 417 6.665992 TGTTCTCTGGATGGGTATATGTAC 57.334 41.667 0.00 0.00 0.00 2.90
412 418 6.787458 ACATGTTCTCTGGATGGGTATATGTA 59.213 38.462 0.00 0.00 0.00 2.29
413 419 5.608437 ACATGTTCTCTGGATGGGTATATGT 59.392 40.000 0.00 0.00 0.00 2.29
414 420 6.119240 ACATGTTCTCTGGATGGGTATATG 57.881 41.667 0.00 0.00 0.00 1.78
452 458 5.754778 CGGCGGGTTATTTATTTTAAGGAG 58.245 41.667 0.00 0.00 0.00 3.69
453 459 4.036616 GCGGCGGGTTATTTATTTTAAGGA 59.963 41.667 9.78 0.00 0.00 3.36
454 460 4.292599 GCGGCGGGTTATTTATTTTAAGG 58.707 43.478 9.78 0.00 0.00 2.69
463 469 2.439519 CTGGGCGGCGGGTTATTT 60.440 61.111 9.78 0.00 0.00 1.40
549 562 1.200519 ACCAGAGCGCCAGGTAATTA 58.799 50.000 13.60 0.00 32.92 1.40
555 568 2.759973 TCCTACCAGAGCGCCAGG 60.760 66.667 2.29 6.26 0.00 4.45
557 570 1.035932 GTACTCCTACCAGAGCGCCA 61.036 60.000 2.29 0.00 37.39 5.69
558 571 1.734748 GTACTCCTACCAGAGCGCC 59.265 63.158 2.29 0.00 37.39 6.53
560 573 1.595466 ATCGTACTCCTACCAGAGCG 58.405 55.000 0.00 0.00 37.39 5.03
561 574 2.950309 TGAATCGTACTCCTACCAGAGC 59.050 50.000 0.00 0.00 37.39 4.09
563 576 4.597004 AGTTGAATCGTACTCCTACCAGA 58.403 43.478 0.00 0.00 0.00 3.86
564 577 4.398358 TGAGTTGAATCGTACTCCTACCAG 59.602 45.833 11.20 0.00 40.00 4.00
565 578 4.338012 TGAGTTGAATCGTACTCCTACCA 58.662 43.478 11.20 0.00 40.00 3.25
566 579 4.978083 TGAGTTGAATCGTACTCCTACC 57.022 45.455 11.20 0.00 40.00 3.18
567 580 5.007430 TCGATGAGTTGAATCGTACTCCTAC 59.993 44.000 11.20 4.33 45.53 3.18
568 581 5.121105 TCGATGAGTTGAATCGTACTCCTA 58.879 41.667 11.20 0.00 45.53 2.94
569 582 3.945921 TCGATGAGTTGAATCGTACTCCT 59.054 43.478 11.20 3.72 45.53 3.69
570 583 4.288670 TCGATGAGTTGAATCGTACTCC 57.711 45.455 11.20 0.00 45.53 3.85
571 584 5.511571 TCATCGATGAGTTGAATCGTACTC 58.488 41.667 23.99 7.97 45.53 2.59
572 585 5.500645 TCATCGATGAGTTGAATCGTACT 57.499 39.130 23.99 0.00 45.53 2.73
573 586 6.417930 TCAATCATCGATGAGTTGAATCGTAC 59.582 38.462 30.07 0.00 45.53 3.67
574 587 6.503524 TCAATCATCGATGAGTTGAATCGTA 58.496 36.000 30.07 17.94 45.53 3.43
575 588 5.351458 TCAATCATCGATGAGTTGAATCGT 58.649 37.500 30.07 14.97 45.53 3.73
576 589 5.895216 TCAATCATCGATGAGTTGAATCG 57.105 39.130 30.07 19.37 46.47 3.34
577 590 7.417496 TGATCAATCATCGATGAGTTGAATC 57.583 36.000 32.66 28.98 40.64 2.52
578 591 7.981102 ATGATCAATCATCGATGAGTTGAAT 57.019 32.000 32.66 25.78 43.72 2.57
602 615 7.042725 CGCCTCTCAGTTTCATCGATTAAATAA 60.043 37.037 7.94 0.00 0.00 1.40
603 616 6.420903 CGCCTCTCAGTTTCATCGATTAAATA 59.579 38.462 7.94 0.00 0.00 1.40
604 617 5.235186 CGCCTCTCAGTTTCATCGATTAAAT 59.765 40.000 7.94 0.00 0.00 1.40
605 618 4.566759 CGCCTCTCAGTTTCATCGATTAAA 59.433 41.667 0.00 0.00 0.00 1.52
654 667 0.036164 CAACCACGAAGGACCATGGA 59.964 55.000 21.47 0.00 41.22 3.41
655 668 0.250727 ACAACCACGAAGGACCATGG 60.251 55.000 11.19 11.19 41.22 3.66
656 669 1.156736 GACAACCACGAAGGACCATG 58.843 55.000 5.70 0.00 41.22 3.66
657 670 0.320421 CGACAACCACGAAGGACCAT 60.320 55.000 5.70 0.00 41.22 3.55
658 671 1.068417 CGACAACCACGAAGGACCA 59.932 57.895 5.70 0.00 41.22 4.02
659 672 1.068585 ACGACAACCACGAAGGACC 59.931 57.895 5.70 0.00 41.22 4.46
660 673 0.529119 ACACGACAACCACGAAGGAC 60.529 55.000 5.70 0.00 41.22 3.85
690 703 2.095668 CGGTAATCACCTAGCTAGCTCG 60.096 54.545 23.26 15.60 43.33 5.03
733 746 5.357314 TCTCGTTGTTTAATTGTGGTTTGGA 59.643 36.000 0.00 0.00 0.00 3.53
736 749 6.921307 GGAATCTCGTTGTTTAATTGTGGTTT 59.079 34.615 0.00 0.00 0.00 3.27
749 762 2.742053 CGGTGATTTGGAATCTCGTTGT 59.258 45.455 2.74 0.00 0.00 3.32
790 803 2.736682 CGCGGTTTCATGGACGGTC 61.737 63.158 0.00 0.00 0.00 4.79
812 825 6.652062 GTCTTATAGGTAGTGGTAGAGAGAGC 59.348 46.154 0.00 0.00 0.00 4.09
820 833 3.567164 GCTGCGTCTTATAGGTAGTGGTA 59.433 47.826 0.00 0.00 0.00 3.25
837 850 2.887568 GATCGAGTGGGTGCTGCG 60.888 66.667 0.00 0.00 0.00 5.18
841 854 2.583593 GCTCGATCGAGTGGGTGC 60.584 66.667 37.59 24.08 43.70 5.01
845 858 0.938637 GATGCAGCTCGATCGAGTGG 60.939 60.000 37.59 30.59 43.70 4.00
859 872 3.396560 CTGAATAATGGCGAGAGATGCA 58.603 45.455 0.00 0.00 0.00 3.96
867 880 3.544684 AGTGAATGCTGAATAATGGCGA 58.455 40.909 0.00 0.00 0.00 5.54
888 901 2.312741 AGGAATGAAGCAATGGAGGGAA 59.687 45.455 0.00 0.00 0.00 3.97
889 902 1.925255 AGGAATGAAGCAATGGAGGGA 59.075 47.619 0.00 0.00 0.00 4.20
890 903 2.029623 CAGGAATGAAGCAATGGAGGG 58.970 52.381 0.00 0.00 0.00 4.30
891 904 1.407979 GCAGGAATGAAGCAATGGAGG 59.592 52.381 0.00 0.00 0.00 4.30
904 917 0.029267 ATGGAGGGAGGAGCAGGAAT 60.029 55.000 0.00 0.00 0.00 3.01
906 919 1.074926 GATGGAGGGAGGAGCAGGA 60.075 63.158 0.00 0.00 0.00 3.86
908 921 3.136750 CGATGGAGGGAGGAGCAG 58.863 66.667 0.00 0.00 0.00 4.24
909 922 3.157252 GCGATGGAGGGAGGAGCA 61.157 66.667 0.00 0.00 0.00 4.26
910 923 1.977293 AAAGCGATGGAGGGAGGAGC 61.977 60.000 0.00 0.00 0.00 4.70
911 924 0.105778 GAAAGCGATGGAGGGAGGAG 59.894 60.000 0.00 0.00 0.00 3.69
912 925 0.325671 AGAAAGCGATGGAGGGAGGA 60.326 55.000 0.00 0.00 0.00 3.71
913 926 0.543749 AAGAAAGCGATGGAGGGAGG 59.456 55.000 0.00 0.00 0.00 4.30
922 935 2.462456 TGAGACAGCAAGAAAGCGAT 57.538 45.000 0.00 0.00 40.15 4.58
947 960 2.423926 ACGTGTGATCTGTCAGACAC 57.576 50.000 20.01 20.01 46.05 3.67
955 969 0.388520 TGAGCCGAACGTGTGATCTG 60.389 55.000 0.00 0.00 0.00 2.90
966 980 3.159298 GGCTGAAGAATGAGCCGAA 57.841 52.632 0.00 0.00 45.25 4.30
973 987 3.059325 GGAATCGAATCGGCTGAAGAATG 60.059 47.826 0.00 0.00 0.00 2.67
978 992 2.483876 GATGGAATCGAATCGGCTGAA 58.516 47.619 0.00 0.00 31.13 3.02
1504 1528 9.236691 ACATTGCGTACAAATGAATAATGAATC 57.763 29.630 19.81 0.00 39.77 2.52
1507 1531 9.662545 CATACATTGCGTACAAATGAATAATGA 57.337 29.630 19.81 2.85 39.77 2.57
1508 1532 8.419435 GCATACATTGCGTACAAATGAATAATG 58.581 33.333 19.81 16.63 42.54 1.90
1527 1551 2.235650 ACACACAGCTGAGAGCATACAT 59.764 45.455 23.35 0.00 45.56 2.29
1531 1555 3.703556 ACTATACACACAGCTGAGAGCAT 59.296 43.478 23.35 10.10 45.56 3.79
1536 1560 7.497925 TGTATAGACTATACACACAGCTGAG 57.502 40.000 25.09 16.23 44.35 3.35
1553 1577 7.002276 TCTCCGTTGGATTGTCTATGTATAGA 58.998 38.462 0.00 0.00 37.07 1.98
1554 1578 7.215719 TCTCCGTTGGATTGTCTATGTATAG 57.784 40.000 0.00 0.00 0.00 1.31
1555 1579 7.776618 ATCTCCGTTGGATTGTCTATGTATA 57.223 36.000 0.00 0.00 0.00 1.47
1556 1580 6.672266 ATCTCCGTTGGATTGTCTATGTAT 57.328 37.500 0.00 0.00 0.00 2.29
1559 1583 6.459066 ACATATCTCCGTTGGATTGTCTATG 58.541 40.000 0.00 0.00 0.00 2.23
1563 1587 7.657761 AGAATTACATATCTCCGTTGGATTGTC 59.342 37.037 0.00 0.00 0.00 3.18
1567 1591 7.546250 AGAGAATTACATATCTCCGTTGGAT 57.454 36.000 0.00 0.00 42.45 3.41
1569 1593 7.887381 AGTAGAGAATTACATATCTCCGTTGG 58.113 38.462 0.00 0.00 42.45 3.77
1573 1597 8.795842 ACCTAGTAGAGAATTACATATCTCCG 57.204 38.462 0.00 0.00 42.45 4.63
1599 6695 4.006989 CGGATGGTCAGTTTGGTTCATAA 58.993 43.478 0.00 0.00 0.00 1.90
1604 6700 0.893727 GCCGGATGGTCAGTTTGGTT 60.894 55.000 5.05 0.00 37.67 3.67
1621 6717 1.534163 GAGGGTCACAAAACTTACGCC 59.466 52.381 0.00 0.00 0.00 5.68
1676 6772 3.654414 GAGATGGACGCCAGTAAATAGG 58.346 50.000 4.90 0.00 36.75 2.57
1677 6773 3.309388 CGAGATGGACGCCAGTAAATAG 58.691 50.000 4.90 0.00 36.75 1.73
1678 6774 3.364889 CGAGATGGACGCCAGTAAATA 57.635 47.619 4.90 0.00 36.75 1.40
1679 6775 2.225068 CGAGATGGACGCCAGTAAAT 57.775 50.000 4.90 0.00 36.75 1.40
1680 6776 3.733236 CGAGATGGACGCCAGTAAA 57.267 52.632 4.90 0.00 36.75 2.01
1688 6784 1.084370 GTTGAAGGGCGAGATGGACG 61.084 60.000 0.00 0.00 0.00 4.79
1689 6785 1.084370 CGTTGAAGGGCGAGATGGAC 61.084 60.000 0.00 0.00 0.00 4.02
1690 6786 1.218047 CGTTGAAGGGCGAGATGGA 59.782 57.895 0.00 0.00 0.00 3.41
1691 6787 1.218047 TCGTTGAAGGGCGAGATGG 59.782 57.895 0.00 0.00 32.98 3.51
1692 6788 4.910956 TCGTTGAAGGGCGAGATG 57.089 55.556 0.00 0.00 32.98 2.90
1696 6792 2.257371 CGACTCGTTGAAGGGCGA 59.743 61.111 0.00 0.00 35.70 5.54
1697 6793 2.087009 GTCGACTCGTTGAAGGGCG 61.087 63.158 8.70 0.00 0.00 6.13
1698 6794 1.737008 GGTCGACTCGTTGAAGGGC 60.737 63.158 16.46 0.00 0.00 5.19
1699 6795 0.032952 TTGGTCGACTCGTTGAAGGG 59.967 55.000 16.46 0.00 0.00 3.95
1700 6796 1.860676 TTTGGTCGACTCGTTGAAGG 58.139 50.000 16.46 0.00 0.00 3.46
1701 6797 3.363970 CCATTTTGGTCGACTCGTTGAAG 60.364 47.826 16.46 0.00 31.35 3.02
1702 6798 2.546368 CCATTTTGGTCGACTCGTTGAA 59.454 45.455 16.46 3.00 31.35 2.69
1703 6799 2.139917 CCATTTTGGTCGACTCGTTGA 58.860 47.619 16.46 0.00 31.35 3.18
1704 6800 2.096417 GTCCATTTTGGTCGACTCGTTG 60.096 50.000 16.46 7.22 39.03 4.10
1705 6801 2.140717 GTCCATTTTGGTCGACTCGTT 58.859 47.619 16.46 0.00 39.03 3.85
1706 6802 1.607251 GGTCCATTTTGGTCGACTCGT 60.607 52.381 16.46 0.00 39.03 4.18
1707 6803 1.076332 GGTCCATTTTGGTCGACTCG 58.924 55.000 16.46 0.00 39.03 4.18
1708 6804 1.076332 CGGTCCATTTTGGTCGACTC 58.924 55.000 16.46 6.30 39.03 3.36
1709 6805 0.321298 CCGGTCCATTTTGGTCGACT 60.321 55.000 16.46 0.00 39.03 4.18
1710 6806 1.918868 GCCGGTCCATTTTGGTCGAC 61.919 60.000 7.13 7.13 39.03 4.20
1711 6807 1.673009 GCCGGTCCATTTTGGTCGA 60.673 57.895 1.90 0.00 39.03 4.20
1712 6808 2.696759 GGCCGGTCCATTTTGGTCG 61.697 63.158 1.90 0.20 39.03 4.79
1713 6809 2.348104 GGGCCGGTCCATTTTGGTC 61.348 63.158 23.50 0.00 39.03 4.02
1714 6810 2.283604 GGGCCGGTCCATTTTGGT 60.284 61.111 23.50 0.00 39.03 3.67
1715 6811 2.283532 TGGGCCGGTCCATTTTGG 60.284 61.111 27.82 0.00 39.43 3.28
1716 6812 2.969827 GTGGGCCGGTCCATTTTG 59.030 61.111 34.24 0.00 39.26 2.44
1717 6813 2.675075 CGTGGGCCGGTCCATTTT 60.675 61.111 34.24 0.00 39.26 1.82
1739 6835 4.845580 AGAGCATTCCGCCTGCCG 62.846 66.667 0.00 0.00 44.04 5.69
1740 6836 1.598701 AAAAGAGCATTCCGCCTGCC 61.599 55.000 0.00 0.00 44.04 4.85
1741 6837 0.244721 AAAAAGAGCATTCCGCCTGC 59.755 50.000 0.00 0.00 44.04 4.85
1842 6938 9.689976 CAACATTCCAAATATACTTGTTCAACA 57.310 29.630 0.00 0.00 0.00 3.33
1843 6939 9.906660 TCAACATTCCAAATATACTTGTTCAAC 57.093 29.630 0.00 0.00 0.00 3.18
1867 6963 9.521841 TGTCCAACATTGTTTAATACCTATTCA 57.478 29.630 0.00 0.00 0.00 2.57
1870 6966 9.528489 ACTTGTCCAACATTGTTTAATACCTAT 57.472 29.630 0.00 0.00 0.00 2.57
1871 6967 8.927675 ACTTGTCCAACATTGTTTAATACCTA 57.072 30.769 0.00 0.00 0.00 3.08
1872 6968 7.833285 ACTTGTCCAACATTGTTTAATACCT 57.167 32.000 0.00 0.00 0.00 3.08
1902 6998 7.704472 TGTTCGAACACTTATTCAGCAATTTTT 59.296 29.630 26.53 0.00 33.17 1.94
1903 6999 7.199766 TGTTCGAACACTTATTCAGCAATTTT 58.800 30.769 26.53 0.00 33.17 1.82
1904 7000 6.734137 TGTTCGAACACTTATTCAGCAATTT 58.266 32.000 26.53 0.00 33.17 1.82
1905 7001 6.312399 TGTTCGAACACTTATTCAGCAATT 57.688 33.333 26.53 0.00 33.17 2.32
1906 7002 5.940192 TGTTCGAACACTTATTCAGCAAT 57.060 34.783 26.53 0.00 33.17 3.56
1907 7003 5.743026 TTGTTCGAACACTTATTCAGCAA 57.257 34.783 29.74 8.58 38.92 3.91
1908 7004 5.238432 ACATTGTTCGAACACTTATTCAGCA 59.762 36.000 29.74 12.13 38.92 4.41
1909 7005 5.689819 ACATTGTTCGAACACTTATTCAGC 58.310 37.500 29.74 0.00 38.92 4.26
1910 7006 7.351981 TCAACATTGTTCGAACACTTATTCAG 58.648 34.615 29.74 13.89 38.92 3.02
1911 7007 7.252965 TCAACATTGTTCGAACACTTATTCA 57.747 32.000 29.74 14.36 38.92 2.57
1912 7008 7.149351 CGTTCAACATTGTTCGAACACTTATTC 60.149 37.037 29.74 14.67 38.92 1.75
1913 7009 6.631238 CGTTCAACATTGTTCGAACACTTATT 59.369 34.615 29.74 18.01 38.92 1.40
1914 7010 6.133392 CGTTCAACATTGTTCGAACACTTAT 58.867 36.000 29.74 18.14 38.92 1.73
1915 7011 5.063691 ACGTTCAACATTGTTCGAACACTTA 59.936 36.000 29.74 16.61 38.92 2.24
1916 7012 4.142773 ACGTTCAACATTGTTCGAACACTT 60.143 37.500 29.74 17.58 38.92 3.16
1917 7013 3.372822 ACGTTCAACATTGTTCGAACACT 59.627 39.130 29.74 22.08 38.92 3.55
1918 7014 3.477090 CACGTTCAACATTGTTCGAACAC 59.523 43.478 29.74 14.77 38.92 3.32
1919 7015 3.125487 ACACGTTCAACATTGTTCGAACA 59.875 39.130 26.53 26.53 38.08 3.18
1920 7016 3.676540 ACACGTTCAACATTGTTCGAAC 58.323 40.909 21.42 21.42 35.50 3.95
1921 7017 5.660629 ATACACGTTCAACATTGTTCGAA 57.339 34.783 13.90 11.33 33.03 3.71
1922 7018 6.954616 ATATACACGTTCAACATTGTTCGA 57.045 33.333 13.90 6.79 33.03 3.71
1923 7019 9.531412 TTTTATATACACGTTCAACATTGTTCG 57.469 29.630 0.00 3.45 0.00 3.95
1973 7069 9.496873 ACACATGATCAACAAAATTCATCATTT 57.503 25.926 0.00 0.00 36.57 2.32
2043 7139 9.421806 CCATATGCTTGACTAACATTTTTCAAA 57.578 29.630 0.00 0.00 0.00 2.69
2044 7140 8.034215 CCCATATGCTTGACTAACATTTTTCAA 58.966 33.333 0.00 0.00 0.00 2.69
2045 7141 7.395772 TCCCATATGCTTGACTAACATTTTTCA 59.604 33.333 0.00 0.00 0.00 2.69
2046 7142 7.771183 TCCCATATGCTTGACTAACATTTTTC 58.229 34.615 0.00 0.00 0.00 2.29
2047 7143 7.716799 TCCCATATGCTTGACTAACATTTTT 57.283 32.000 0.00 0.00 0.00 1.94
2048 7144 7.716799 TTCCCATATGCTTGACTAACATTTT 57.283 32.000 0.00 0.00 0.00 1.82
2049 7145 7.716799 TTTCCCATATGCTTGACTAACATTT 57.283 32.000 0.00 0.00 0.00 2.32
2050 7146 7.342799 ACATTTCCCATATGCTTGACTAACATT 59.657 33.333 0.00 0.00 0.00 2.71
2051 7147 6.835488 ACATTTCCCATATGCTTGACTAACAT 59.165 34.615 0.00 0.00 0.00 2.71
2052 7148 6.186957 ACATTTCCCATATGCTTGACTAACA 58.813 36.000 0.00 0.00 0.00 2.41
2053 7149 6.699575 ACATTTCCCATATGCTTGACTAAC 57.300 37.500 0.00 0.00 0.00 2.34
2054 7150 8.815565 TTAACATTTCCCATATGCTTGACTAA 57.184 30.769 0.00 0.00 0.00 2.24
2055 7151 8.815565 TTTAACATTTCCCATATGCTTGACTA 57.184 30.769 0.00 0.00 0.00 2.59
2056 7152 7.716799 TTTAACATTTCCCATATGCTTGACT 57.283 32.000 0.00 0.00 0.00 3.41
2057 7153 7.981225 ACATTTAACATTTCCCATATGCTTGAC 59.019 33.333 0.00 0.00 0.00 3.18
2058 7154 7.980662 CACATTTAACATTTCCCATATGCTTGA 59.019 33.333 0.00 0.00 0.00 3.02
2059 7155 7.765360 ACACATTTAACATTTCCCATATGCTTG 59.235 33.333 0.00 0.00 0.00 4.01
2060 7156 7.850193 ACACATTTAACATTTCCCATATGCTT 58.150 30.769 0.00 0.00 0.00 3.91
2061 7157 7.422465 ACACATTTAACATTTCCCATATGCT 57.578 32.000 0.00 0.00 0.00 3.79
2191 7287 9.934190 GCACTTGTTCAACATTTGATTAAAAAT 57.066 25.926 0.00 0.00 39.84 1.82
2192 7288 8.394121 GGCACTTGTTCAACATTTGATTAAAAA 58.606 29.630 0.00 0.00 39.84 1.94
2193 7289 7.768120 AGGCACTTGTTCAACATTTGATTAAAA 59.232 29.630 0.00 0.00 35.14 1.52
2194 7290 7.271511 AGGCACTTGTTCAACATTTGATTAAA 58.728 30.769 0.00 0.00 35.14 1.52
2195 7291 6.815089 AGGCACTTGTTCAACATTTGATTAA 58.185 32.000 0.00 0.00 35.14 1.40
2196 7292 6.403866 AGGCACTTGTTCAACATTTGATTA 57.596 33.333 0.00 0.00 35.14 1.75
2197 7293 5.280654 AGGCACTTGTTCAACATTTGATT 57.719 34.783 0.00 0.00 35.14 2.57
2198 7294 4.942761 AGGCACTTGTTCAACATTTGAT 57.057 36.364 0.00 0.00 35.14 2.57
2199 7295 4.261572 GCTAGGCACTTGTTCAACATTTGA 60.262 41.667 0.00 0.00 41.75 2.69
2200 7296 3.983344 GCTAGGCACTTGTTCAACATTTG 59.017 43.478 0.00 0.00 41.75 2.32
2201 7297 3.304659 CGCTAGGCACTTGTTCAACATTT 60.305 43.478 0.00 0.00 41.75 2.32
2202 7298 2.226437 CGCTAGGCACTTGTTCAACATT 59.774 45.455 0.00 0.00 41.75 2.71
2203 7299 1.806542 CGCTAGGCACTTGTTCAACAT 59.193 47.619 0.00 0.00 41.75 2.71
2204 7300 1.225855 CGCTAGGCACTTGTTCAACA 58.774 50.000 0.00 0.00 41.75 3.33
2205 7301 0.110192 GCGCTAGGCACTTGTTCAAC 60.110 55.000 0.00 0.00 41.75 3.18
2206 7302 2.244000 GCGCTAGGCACTTGTTCAA 58.756 52.632 0.00 0.00 41.75 2.69
2207 7303 3.966215 GCGCTAGGCACTTGTTCA 58.034 55.556 0.00 0.00 41.75 3.18
2223 7319 2.437359 AGGGAGATTGCACGCTGC 60.437 61.111 0.00 3.44 45.29 5.25
2224 7320 2.110967 CCAGGGAGATTGCACGCTG 61.111 63.158 10.94 10.94 42.49 5.18
2225 7321 2.249413 CTCCAGGGAGATTGCACGCT 62.249 60.000 9.83 0.00 44.53 5.07
2226 7322 1.817099 CTCCAGGGAGATTGCACGC 60.817 63.158 9.83 0.00 44.53 5.34
2227 7323 1.900351 TCTCCAGGGAGATTGCACG 59.100 57.895 13.96 0.00 45.26 5.34
2234 7330 2.183445 TCCCTTGTCTCCAGGGAGA 58.817 57.895 13.96 13.96 46.13 3.71
2235 7331 4.896979 TCCCTTGTCTCCAGGGAG 57.103 61.111 9.11 9.11 46.13 4.30
2237 7333 2.660064 CGGTCCCTTGTCTCCAGGG 61.660 68.421 0.00 0.00 44.06 4.45
2238 7334 0.978146 ATCGGTCCCTTGTCTCCAGG 60.978 60.000 0.00 0.00 0.00 4.45
2239 7335 0.461961 GATCGGTCCCTTGTCTCCAG 59.538 60.000 0.00 0.00 0.00 3.86
2240 7336 0.976073 GGATCGGTCCCTTGTCTCCA 60.976 60.000 2.19 0.00 38.69 3.86
2241 7337 1.823976 GGATCGGTCCCTTGTCTCC 59.176 63.158 2.19 0.00 38.69 3.71
2250 7346 0.315568 CGAGATGAAGGGATCGGTCC 59.684 60.000 6.02 6.02 44.29 4.46
2251 7347 0.319125 GCGAGATGAAGGGATCGGTC 60.319 60.000 0.00 0.00 35.76 4.79
2252 7348 1.742768 GCGAGATGAAGGGATCGGT 59.257 57.895 0.00 0.00 35.76 4.69
2253 7349 1.372251 CGCGAGATGAAGGGATCGG 60.372 63.158 0.00 0.00 35.76 4.18
2254 7350 0.249073 AACGCGAGATGAAGGGATCG 60.249 55.000 15.93 0.00 38.19 3.69
2255 7351 2.395654 GTAACGCGAGATGAAGGGATC 58.604 52.381 15.93 0.00 0.00 3.36
2256 7352 1.068741 GGTAACGCGAGATGAAGGGAT 59.931 52.381 15.93 0.00 0.00 3.85
2257 7353 0.458669 GGTAACGCGAGATGAAGGGA 59.541 55.000 15.93 0.00 0.00 4.20
2258 7354 0.460311 AGGTAACGCGAGATGAAGGG 59.540 55.000 15.93 0.00 46.39 3.95
2259 7355 1.405821 AGAGGTAACGCGAGATGAAGG 59.594 52.381 15.93 0.00 43.56 3.46
2260 7356 2.455032 CAGAGGTAACGCGAGATGAAG 58.545 52.381 15.93 0.00 43.56 3.02
2261 7357 1.469251 GCAGAGGTAACGCGAGATGAA 60.469 52.381 15.93 0.00 43.56 2.57
2262 7358 0.100682 GCAGAGGTAACGCGAGATGA 59.899 55.000 15.93 0.00 43.56 2.92
2263 7359 0.101399 AGCAGAGGTAACGCGAGATG 59.899 55.000 15.93 2.37 43.56 2.90
2264 7360 0.382515 GAGCAGAGGTAACGCGAGAT 59.617 55.000 15.93 0.13 43.56 2.75
2265 7361 1.654954 GGAGCAGAGGTAACGCGAGA 61.655 60.000 15.93 0.00 43.56 4.04
2266 7362 1.226717 GGAGCAGAGGTAACGCGAG 60.227 63.158 15.93 0.00 43.56 5.03
2267 7363 1.248785 AAGGAGCAGAGGTAACGCGA 61.249 55.000 15.93 0.00 43.56 5.87
2268 7364 0.389948 AAAGGAGCAGAGGTAACGCG 60.390 55.000 3.53 3.53 43.56 6.01
2269 7365 1.809684 AAAAGGAGCAGAGGTAACGC 58.190 50.000 0.00 0.00 46.39 4.84
2270 7366 2.921754 CGTAAAAGGAGCAGAGGTAACG 59.078 50.000 0.00 0.00 46.39 3.18
2271 7367 4.184079 TCGTAAAAGGAGCAGAGGTAAC 57.816 45.455 0.00 0.00 0.00 2.50
2272 7368 5.416271 AATCGTAAAAGGAGCAGAGGTAA 57.584 39.130 0.00 0.00 0.00 2.85
2273 7369 6.513180 CATAATCGTAAAAGGAGCAGAGGTA 58.487 40.000 0.00 0.00 0.00 3.08
2274 7370 3.983044 AATCGTAAAAGGAGCAGAGGT 57.017 42.857 0.00 0.00 0.00 3.85
2275 7371 4.212214 GCATAATCGTAAAAGGAGCAGAGG 59.788 45.833 0.00 0.00 0.00 3.69
2276 7372 4.084849 CGCATAATCGTAAAAGGAGCAGAG 60.085 45.833 0.00 0.00 0.00 3.35
2277 7373 3.802139 CGCATAATCGTAAAAGGAGCAGA 59.198 43.478 0.00 0.00 0.00 4.26
2278 7374 3.604772 GCGCATAATCGTAAAAGGAGCAG 60.605 47.826 0.30 0.00 0.00 4.24
2279 7375 2.286833 GCGCATAATCGTAAAAGGAGCA 59.713 45.455 0.30 0.00 0.00 4.26
2280 7376 2.659291 CGCGCATAATCGTAAAAGGAGC 60.659 50.000 8.75 0.00 0.00 4.70
2281 7377 2.659291 GCGCGCATAATCGTAAAAGGAG 60.659 50.000 29.10 0.00 0.00 3.69
2282 7378 1.259507 GCGCGCATAATCGTAAAAGGA 59.740 47.619 29.10 0.00 0.00 3.36
2283 7379 1.004398 TGCGCGCATAATCGTAAAAGG 60.004 47.619 33.09 0.00 0.00 3.11
2284 7380 2.361094 TGCGCGCATAATCGTAAAAG 57.639 45.000 33.09 0.00 0.00 2.27
2285 7381 2.285488 TCATGCGCGCATAATCGTAAAA 59.715 40.909 42.66 14.40 34.91 1.52
2286 7382 1.861575 TCATGCGCGCATAATCGTAAA 59.138 42.857 42.66 19.04 34.91 2.01
2287 7383 1.492720 TCATGCGCGCATAATCGTAA 58.507 45.000 42.66 20.34 34.91 3.18
2288 7384 1.492720 TTCATGCGCGCATAATCGTA 58.507 45.000 42.66 23.06 34.91 3.43
2289 7385 0.867746 ATTCATGCGCGCATAATCGT 59.132 45.000 42.66 24.63 34.91 3.73
2290 7386 1.244352 CATTCATGCGCGCATAATCG 58.756 50.000 42.66 30.52 34.91 3.34
2291 7387 1.609932 CCATTCATGCGCGCATAATC 58.390 50.000 42.66 9.47 34.91 1.75
2292 7388 0.241749 CCCATTCATGCGCGCATAAT 59.758 50.000 42.66 33.58 34.91 1.28
2293 7389 1.653667 CCCATTCATGCGCGCATAA 59.346 52.632 42.66 33.05 34.91 1.90
2294 7390 2.906939 GCCCATTCATGCGCGCATA 61.907 57.895 42.66 30.46 34.91 3.14
2295 7391 4.274700 GCCCATTCATGCGCGCAT 62.275 61.111 39.13 39.13 37.08 4.73
2316 7412 1.752694 CCCCTTGTGCCGTATTGGG 60.753 63.158 0.00 0.00 38.63 4.12
2317 7413 0.748005 CTCCCCTTGTGCCGTATTGG 60.748 60.000 0.00 0.00 42.50 3.16
2318 7414 0.251916 TCTCCCCTTGTGCCGTATTG 59.748 55.000 0.00 0.00 0.00 1.90
2319 7415 0.988832 TTCTCCCCTTGTGCCGTATT 59.011 50.000 0.00 0.00 0.00 1.89
2320 7416 0.988832 TTTCTCCCCTTGTGCCGTAT 59.011 50.000 0.00 0.00 0.00 3.06
2321 7417 0.766131 TTTTCTCCCCTTGTGCCGTA 59.234 50.000 0.00 0.00 0.00 4.02
2322 7418 0.112412 ATTTTCTCCCCTTGTGCCGT 59.888 50.000 0.00 0.00 0.00 5.68
2323 7419 0.527565 CATTTTCTCCCCTTGTGCCG 59.472 55.000 0.00 0.00 0.00 5.69
2324 7420 0.247460 GCATTTTCTCCCCTTGTGCC 59.753 55.000 0.00 0.00 0.00 5.01
2325 7421 1.260544 AGCATTTTCTCCCCTTGTGC 58.739 50.000 0.00 0.00 0.00 4.57
2326 7422 2.892852 TGAAGCATTTTCTCCCCTTGTG 59.107 45.455 0.00 0.00 0.00 3.33
2327 7423 3.160269 CTGAAGCATTTTCTCCCCTTGT 58.840 45.455 0.00 0.00 0.00 3.16
2328 7424 2.094338 GCTGAAGCATTTTCTCCCCTTG 60.094 50.000 0.00 0.00 41.59 3.61
2329 7425 2.174360 GCTGAAGCATTTTCTCCCCTT 58.826 47.619 0.00 0.00 41.59 3.95
2330 7426 1.844687 GCTGAAGCATTTTCTCCCCT 58.155 50.000 0.00 0.00 41.59 4.79
2331 7427 0.453390 CGCTGAAGCATTTTCTCCCC 59.547 55.000 2.79 0.00 42.21 4.81
2332 7428 1.399791 CTCGCTGAAGCATTTTCTCCC 59.600 52.381 2.79 0.00 42.21 4.30
2333 7429 2.350522 TCTCGCTGAAGCATTTTCTCC 58.649 47.619 2.79 0.00 42.21 3.71
2334 7430 2.999355 ACTCTCGCTGAAGCATTTTCTC 59.001 45.455 2.79 0.00 42.21 2.87
2335 7431 3.051081 ACTCTCGCTGAAGCATTTTCT 57.949 42.857 2.79 0.00 42.21 2.52
2336 7432 3.486584 CAACTCTCGCTGAAGCATTTTC 58.513 45.455 2.79 0.00 42.21 2.29
2337 7433 2.351157 GCAACTCTCGCTGAAGCATTTT 60.351 45.455 2.79 0.00 42.21 1.82
2338 7434 1.198637 GCAACTCTCGCTGAAGCATTT 59.801 47.619 2.79 0.00 42.21 2.32
2339 7435 0.801251 GCAACTCTCGCTGAAGCATT 59.199 50.000 2.79 0.00 42.21 3.56
2340 7436 0.036577 AGCAACTCTCGCTGAAGCAT 60.037 50.000 2.79 0.00 42.21 3.79
2341 7437 0.603065 TAGCAACTCTCGCTGAAGCA 59.397 50.000 2.79 0.00 40.73 3.91
2342 7438 0.995728 GTAGCAACTCTCGCTGAAGC 59.004 55.000 0.00 0.00 40.73 3.86
2343 7439 1.634702 GGTAGCAACTCTCGCTGAAG 58.365 55.000 0.00 0.00 40.73 3.02
2344 7440 0.109272 CGGTAGCAACTCTCGCTGAA 60.109 55.000 0.00 0.00 40.73 3.02
2345 7441 1.241990 ACGGTAGCAACTCTCGCTGA 61.242 55.000 0.00 0.00 40.73 4.26
2346 7442 0.798771 GACGGTAGCAACTCTCGCTG 60.799 60.000 0.00 0.00 40.73 5.18
2347 7443 0.961358 AGACGGTAGCAACTCTCGCT 60.961 55.000 0.00 0.00 43.62 4.93
2348 7444 0.523757 GAGACGGTAGCAACTCTCGC 60.524 60.000 7.73 0.00 0.00 5.03
2349 7445 0.247735 CGAGACGGTAGCAACTCTCG 60.248 60.000 15.21 15.21 44.33 4.04
2350 7446 0.523757 GCGAGACGGTAGCAACTCTC 60.524 60.000 11.60 7.24 0.00 3.20
2351 7447 0.961358 AGCGAGACGGTAGCAACTCT 60.961 55.000 11.60 0.06 35.27 3.24
2352 7448 0.109226 AAGCGAGACGGTAGCAACTC 60.109 55.000 0.00 5.60 36.27 3.01
2353 7449 1.171308 TAAGCGAGACGGTAGCAACT 58.829 50.000 0.00 0.00 36.27 3.16
2354 7450 1.986698 TTAAGCGAGACGGTAGCAAC 58.013 50.000 0.00 0.00 36.27 4.17
2355 7451 2.536365 CATTAAGCGAGACGGTAGCAA 58.464 47.619 0.00 0.00 36.27 3.91
2356 7452 1.801395 GCATTAAGCGAGACGGTAGCA 60.801 52.381 0.00 0.00 36.27 3.49
2357 7453 0.853419 GCATTAAGCGAGACGGTAGC 59.147 55.000 0.00 0.00 36.27 3.58
2368 7464 2.844811 CGCTATGTCTCGCATTAAGC 57.155 50.000 0.00 0.00 38.94 3.09
2377 7473 2.690173 ACATACGAGCGCTATGTCTC 57.310 50.000 16.68 0.31 30.39 3.36
2378 7474 4.768130 AATACATACGAGCGCTATGTCT 57.232 40.909 23.77 14.03 36.45 3.41
2379 7475 5.285607 GGTAAATACATACGAGCGCTATGTC 59.714 44.000 23.77 11.72 36.45 3.06
2380 7476 5.159209 GGTAAATACATACGAGCGCTATGT 58.841 41.667 23.62 23.62 38.23 2.29
2381 7477 5.060569 GTGGTAAATACATACGAGCGCTATG 59.939 44.000 11.50 14.03 0.00 2.23
2382 7478 5.048224 AGTGGTAAATACATACGAGCGCTAT 60.048 40.000 11.50 3.92 0.00 2.97
2383 7479 4.276678 AGTGGTAAATACATACGAGCGCTA 59.723 41.667 11.50 0.00 0.00 4.26
2384 7480 3.067742 AGTGGTAAATACATACGAGCGCT 59.932 43.478 11.27 11.27 0.00 5.92
2385 7481 3.378339 AGTGGTAAATACATACGAGCGC 58.622 45.455 0.00 0.00 0.00 5.92
2386 7482 7.633361 ATTAAGTGGTAAATACATACGAGCG 57.367 36.000 0.00 0.00 0.00 5.03
2412 7508 2.035321 GGCCACTCATTCGTTCCAAAAA 59.965 45.455 0.00 0.00 0.00 1.94
2413 7509 1.611491 GGCCACTCATTCGTTCCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
2414 7510 1.243902 GGCCACTCATTCGTTCCAAA 58.756 50.000 0.00 0.00 0.00 3.28
2415 7511 0.608035 GGGCCACTCATTCGTTCCAA 60.608 55.000 4.39 0.00 0.00 3.53
2416 7512 1.002624 GGGCCACTCATTCGTTCCA 60.003 57.895 4.39 0.00 0.00 3.53
2417 7513 2.106683 CGGGCCACTCATTCGTTCC 61.107 63.158 4.39 0.00 0.00 3.62
2418 7514 0.108520 TACGGGCCACTCATTCGTTC 60.109 55.000 4.39 0.00 35.60 3.95
2419 7515 0.390735 GTACGGGCCACTCATTCGTT 60.391 55.000 4.39 0.00 35.60 3.85
2420 7516 1.217244 GTACGGGCCACTCATTCGT 59.783 57.895 4.39 5.52 37.78 3.85
2421 7517 1.876714 CGTACGGGCCACTCATTCG 60.877 63.158 7.57 0.00 0.00 3.34
2422 7518 0.104304 ATCGTACGGGCCACTCATTC 59.896 55.000 16.52 0.00 0.00 2.67
2423 7519 0.179084 CATCGTACGGGCCACTCATT 60.179 55.000 16.52 0.00 0.00 2.57
2424 7520 1.040893 TCATCGTACGGGCCACTCAT 61.041 55.000 16.52 0.00 0.00 2.90
2425 7521 1.040893 ATCATCGTACGGGCCACTCA 61.041 55.000 16.52 0.00 0.00 3.41
2426 7522 0.597637 CATCATCGTACGGGCCACTC 60.598 60.000 16.52 0.00 0.00 3.51
2427 7523 1.441729 CATCATCGTACGGGCCACT 59.558 57.895 16.52 0.00 0.00 4.00
2428 7524 1.594293 CCATCATCGTACGGGCCAC 60.594 63.158 16.52 0.00 0.00 5.01
2429 7525 2.802724 CCCATCATCGTACGGGCCA 61.803 63.158 16.52 0.00 0.00 5.36
2430 7526 2.030562 CCCATCATCGTACGGGCC 59.969 66.667 16.52 0.00 0.00 5.80
2432 7528 1.300931 CAGCCCATCATCGTACGGG 60.301 63.158 16.52 8.54 42.03 5.28
2433 7529 1.300931 CCAGCCCATCATCGTACGG 60.301 63.158 16.52 0.00 0.00 4.02
2434 7530 0.319040 CTCCAGCCCATCATCGTACG 60.319 60.000 9.53 9.53 0.00 3.67
2435 7531 0.034059 CCTCCAGCCCATCATCGTAC 59.966 60.000 0.00 0.00 0.00 3.67
2436 7532 0.105709 TCCTCCAGCCCATCATCGTA 60.106 55.000 0.00 0.00 0.00 3.43
2437 7533 0.765903 ATCCTCCAGCCCATCATCGT 60.766 55.000 0.00 0.00 0.00 3.73
2438 7534 1.206610 CTATCCTCCAGCCCATCATCG 59.793 57.143 0.00 0.00 0.00 3.84
2439 7535 1.558756 CCTATCCTCCAGCCCATCATC 59.441 57.143 0.00 0.00 0.00 2.92
2440 7536 1.132267 ACCTATCCTCCAGCCCATCAT 60.132 52.381 0.00 0.00 0.00 2.45
2441 7537 0.268869 ACCTATCCTCCAGCCCATCA 59.731 55.000 0.00 0.00 0.00 3.07
2442 7538 0.689623 CACCTATCCTCCAGCCCATC 59.310 60.000 0.00 0.00 0.00 3.51
2443 7539 0.769776 CCACCTATCCTCCAGCCCAT 60.770 60.000 0.00 0.00 0.00 4.00
2444 7540 1.384502 CCACCTATCCTCCAGCCCA 60.385 63.158 0.00 0.00 0.00 5.36
2445 7541 2.150051 CCCACCTATCCTCCAGCCC 61.150 68.421 0.00 0.00 0.00 5.19
2446 7542 2.823758 GCCCACCTATCCTCCAGCC 61.824 68.421 0.00 0.00 0.00 4.85
2447 7543 2.823758 GGCCCACCTATCCTCCAGC 61.824 68.421 0.00 0.00 0.00 4.85
2448 7544 2.511452 CGGCCCACCTATCCTCCAG 61.511 68.421 0.00 0.00 0.00 3.86
2449 7545 2.445845 CGGCCCACCTATCCTCCA 60.446 66.667 0.00 0.00 0.00 3.86
2450 7546 1.764854 TTCGGCCCACCTATCCTCC 60.765 63.158 0.00 0.00 0.00 4.30
2451 7547 1.446366 GTTCGGCCCACCTATCCTC 59.554 63.158 0.00 0.00 0.00 3.71
2452 7548 2.070650 GGTTCGGCCCACCTATCCT 61.071 63.158 11.03 0.00 0.00 3.24
2453 7549 2.509422 GGTTCGGCCCACCTATCC 59.491 66.667 11.03 0.00 0.00 2.59
2463 7559 4.060038 TCGTCCTTCGGGTTCGGC 62.060 66.667 0.00 0.00 40.32 5.54
2464 7560 2.126189 GTCGTCCTTCGGGTTCGG 60.126 66.667 0.00 0.00 40.32 4.30
2465 7561 2.503375 CGTCGTCCTTCGGGTTCG 60.503 66.667 0.00 0.00 40.32 3.95
2466 7562 2.126189 CCGTCGTCCTTCGGGTTC 60.126 66.667 0.00 0.00 42.61 3.62
2467 7563 4.368543 GCCGTCGTCCTTCGGGTT 62.369 66.667 5.78 0.00 45.85 4.11
2469 7565 3.584868 AAAGCCGTCGTCCTTCGGG 62.585 63.158 5.78 0.00 45.85 5.14
2471 7567 2.434134 CGAAAGCCGTCGTCCTTCG 61.434 63.158 0.00 0.00 36.26 3.79
2472 7568 3.460144 CGAAAGCCGTCGTCCTTC 58.540 61.111 0.00 0.00 36.26 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.