>input_sequence_78264
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---------------------------------------------------------ATGTCGTCCGCCCTCTCCTTACC
GGCGACGGTGCGGCCGGCATCCTCCGGGCCTGGGCGCCAGCTTTACGGGTCGCCGCCGC------GCCGCGGTCCGGTGC
TGCCACCGAGGAGGCCGCAGGCGGTGCCGTGCCACGGTCTGCTGGCGCTGCGACCGAGCACGAGGCGCTGCGCCGCTTTC
GGGCAGGACCACCACTACGGGGGCGCGCTGGTGGACGAGGGCATGGCGGTGCTCCGGCGGAGGATCCGGGAGGCGCGGAT
GGCGGAGACAAACTACGAGGCGCCGCCGGCGTGGGCGGACTGGGAGAAGCGCTACTACCCGGCCTACGTCTCCGACGTGT
CCGTGCTCGCCGGAGCGCTGCAGCTGCTGGCCATGGGCACCAGGCCTGGCGTCGCTGCGGCCGTAGTCGCCATGCTGCTC
GCCGGCGTGCCGGTCTCCGCTTTCGCAGTCCTGCACTTCCTCGGTCAGGCGGCGGGATCCGTTATGCACCATGCTTCTTG
A-------------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G026400
CAATATATTTTTTGGTGACATGTATTAACATTTTGTTAGTTAGATTTATGTTTAAAATTTGGCATAAAATACGAAGAGAC
TAATACACTACGACGG-GAAAATGATAGAGTAGTTCGACCCAAGGTGCTGGGATGGATCGGCACTATACGTTGGTGACAT
ATGCGATGATTATGATCATCTGCGCATGTTTCCTTCGCTGACT--ATTTATAATTCAGTTCAATGCAAAAAAG-TTGGTG
TATTCAGCATGC-CTGGTCAGCTGCGTTCCTTCCAATAGAAGGCAATAAAGAGAAAATGAATCAATCTCACTCTCTATAA
ATAAAGTCAGAAATTCGTTGTGGAAAAACCATAGTCTTTGATCATACAATTTCTTTTTTGAAGGGTGGTTGATCATACAA
ATTAATTTAGTACTAAGTACATATACCCATCCAGAGAACATGTTGCTTGGACTTTTTCTCCTTAAAATAAATAACCCGCC
GCCCAG-------GCTACCGAGGCACTACCAGTTCAACTCATAAGAAAACAGTATATATGTACGTACATATATACTCTTT
TTAATTACCTGGCGCTCTGGTAGGAGTACGATTCAACTCATCGATGATTGATCATTATTTAATCGATGAAACTGAGAGGC
GGTAGGCAGGCAGGTGTTAGTTGGAATCCATGGTCCTTCGTGGTTGTCGTGTTGTTGCTTAACGAGCTAGCTAGGTGATT
ACCGCTCCATCCATCGTCAGCTGGATCCAAACCACAATTAAACAACGAGATTCCAAATCACCGGCCAAAACCCGCCAAGG
ATGACCGTCCATGAAACCGCGTGAGCTCTCTCTACCACTACCTATAAGACGCAGCACCCACTCGATCGAGCTGCATCTCT
CGCCATTATTCAGCATTCACTTCCCTCCATTGCTTCATTCCTGCTCCTCCCTCCATCGCTTTCTTGCTGTCTCATCTTCG
TGTCTGA-CAGATCACACGTTCGGCTCATTCTTCAGCCGATTCG----ATTCCATCGATGTCGTCCGCCCTCTCCTTACC
GGCGACGGTGCGGCCGGCATCCTCCGGGCCTGGGCGCCAGCTTTACGGGTCGCCGCCGC------GCCGCGGTCCGGTGC
TGCCACCGAGGAGGCCGCAGGCGGTGCCGTGCCACGGTCTGCTGGCGCTGCGACCGAGCACGAGGCGCTGCGCCGCTTTC
GGGCAGGACCACCACTACGGGGGCGCGCTGGTGGACGAGGGCATGGCGGTGCTCCGGCGGAGGATCCGGGAGGCGCGGAT
GGCGGAGACAAACTACGAGGCGCCGCCGGCGTGGGCGGACTGGGAGAAGCGCTACTACCCGGCCTACGTCTCCGACGTGT
CCGTGCTCGCCGGAGCGCTGCAGCTGCTGGCCATGGGCACCAGGCCTGGCGTCGCTGCGGCCGTAGTCGCCATGCTGCTC
GCCGGCGTGCCGGTCTCCGCTTTCGCAGTCCTGCACTTCCTCGGTCAGGCGGCGGGATCCGTTATGCACCATGCTTCTTG
ATTGATTGATTCATTATTCATTTGTACGCAATGTATGCTCTCAGCTGTGTGTATAGTCTATACATAGACAATCCAACGGA
GATATGTAATTCTCTA----------------------------------------------------------------
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------------------------------------------------CTAGGTTTATGAACCAAACTGACCATCCGGCG
TAAGTTTTGTGACCCTCGTTGTATGTAGTATCTTTTTTCCTTGGCAGTGTGCCTATTTACTGGCGTCCATCTCGCCCTTC
AACGAGTCGACCAAAATGGACCGGCCCACGCGCGCGGCAGGCGGAATGCTCTTTTTTTGCTTTATTTTTTACTTTTGTTT
ATATGTTAAAATATTCTACAAAAAACATTTGAAAATATTGAAAAAATATTTGAAAAATGTTGAACAAGTATATTTGGAAT
GTTGAATAGGTATTAAACAATGTTGGACAAGTATTTAAAAAATTGCTGAATAAGTGTTCGAACAATGTTGAACGTGTATA
TAAAATATGTTGATCACTTATTTTAAAAAAATGATGAATTTTGTTGATCATGTGTATAAAGATGTTAATCAAGCATTTAA
AAAAATGTTGAACAAGTATTTGAAAAATGTTAGTCAAGCATATGGGAAATGTTAAATGTGTATAGAAAAAATGTTCACTA
TGTATTAAATAAATGATGAAAACATTTGATCATGTATATAAAATGTTAATCGAGCATTTGAAAAAATGTTGAACAAGTGT
TTGAATATTTTTAATCAAATGTTGAACAAGTGCCTAGCGCAGCGTGCAATCTCCCTGGAGACAAGGGACCGATCCCTTCA
TCTCGCGTTACCTCTGCTCCTTTTACGATTATGCGCGCATGAATGGGCCGGCCCAATACGGCACAAGGGGAGAAAATGCT
TCAGCGAGAGTTGCTACCGTCTCGCTTAATGCGAGACATAGCGCTCGTATGTATTTACCACTTAATTTTTTTGGAACGAA
TGAGTGGCCCGTACGATGATGGGCTGGAGGATAGGTGGGCCGAACCCGAAGGACGACGGCTTTCGCTGTCGGG
>chr3B_3
--ATATATTTTCCTGTGACATGTATTAACATTTCGTTAGTTAAATCTATGGTCAAAATTTGATATAAAAGACGAAGAGAC
CAATAAACTACAACAGAGAAAATGACAGAGTAGTTGGACCCAAGTGCTA---------------------TTGGTGACGT
ATGCGATGATTATGATCATCTGCGCATGTTTTCTTAGTCGACGAAATTTAGAATTCGGTTCGTTGCAAGAAAAATTCGTG
TATTTAGCATGCCCTGGCCAGCTGCGTTCCTTCCATCAGAAAGAGATAAAGCAAAAAGAAATCAATCTTACTCTAT----
ATAAAGTCAGGAACTCATTGTGGAAG-ACCAGCGTCCTAGATCATACA------------------------------AA
ATTAATTTATTAAGTAT---ATATACCCATCCAGAGAACATGTTGCTTGGACTTTTTT--CTTAAAATTATTAGCCCGCC
GCCCAGTGCCCATGCTACCGAGGCACTACCAGTTCAACTCATATCAAAATG----------------ATATATACTCTTT
TAAATTATCGAGGCCCTACCAG---------TTCAACTCAACGATGATTGATCAA---TTAATCGATGAAACTGAGAGGC
GGTAGGCAGGCAGGTGTTAGTTGGAA-------TCCTTCGTGGTTGCCGTGTTGTTGCTTAAGGAGCTAGCTAGGTGATT
ACCGCTCCATCCATCGTCAGCTGGACCCTAACCACAATTAA-CAACGAGATTCCAAATCACCGGCCAAAACCCGCCAAGG
ATAACCGTCCATGAAACCGCGTGAACTCTCTCCACCACTACCTATAAGAGGCAACACACACTCGATCGAGCCGCATCTCC
CGCCATTATTCAGCATTCAC----CTCCATTGCTTCCTGCTCCTAGCTCCCTCCGTCGCTTTCTTGCTGTCTCATCTTCT
TGTC----------------------------TCAGCCGATTCG----ATTCCATCGATGTCGTCTGCCCTCTCGTTACC
GGCGACGGTGCGGCCGGCATCCACCGGGCCTGGGCGCCAGCTTTACGGGTCGCCGCAGC------GCCACGGTCCGGTGC
TCCGACCGAGGAGGCCGCAGGCCGTTCCGTGCCACGGTCTGCTGGCGCTGCAGCGGAGGACGAGGCGCTGCGGCGCTTCC
GGGCAGG---ACCACTACGGGGGCGCGCTGGTGGACGAGGGCATGGCGGTGCTCCGGCGGAGGATCCGGGAGGCGCGGAT
GGCGGAGACAAACTACGAGGCGCCGGCGGGATGGGCGGACTGGGAGAAGCGCTACTACCCGGCCTACGTCTCCGACGTGT
CCGCGCTCGCCGGAGCACTGCAGCTGCTGGCCATGGGCACCAAGCCTGGCGTCGCTGCGGCCGTTGCCGCCATGCTGCTC
GCCGGAGTACCGATCTCCGCTCTAGCAGTCCTGCACCTCCTCGGCCAGGCGGCGGGATCCATTCTGCACCATGTGTCTTG
ATTGATTCATCATT------------------------------------------------------------------
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------------------------------------------------------CATTCGTACGCAGTGTGTGCTCTATG
TGTCTCTATAGTTTCTATAC------------------------------------------------------------
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-------------------------------------------------------------------------
>chr3D_3
ATCTTCTTGACTG-------------------------------------------------------------------
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-------GGAGATCACACGCTCGGTTTATTCGTTAGCAGGTTCG----GTACAATCGATGTCGTCTGCCGTCTCATTGCA
GTCGACGATGCGGCCGGCAGCCCCAGGACTTGGGCGCCAGCTCCACGGGTCG------CCGCCCTGCCATGGTCCGGTGC
TGCGACCGAGGAGTCCGCGGGCGGTGCCGACGGC------------------------GACGGTGCGTTGCAGCGCGTTC
CGCCGGG---ACCACTACGGGGGCGCGCTGGCGGACGAGGGCATGACGGTGCTCCGGCGGAGGATCCGGGAGGCGCGGAT
GGCCGAGACCAACTACGAGGCGCCGCCGGGGTGGGCCGCCTGGGAGAAGCGCTACTACCGGGCGTATGTCTCCGATGTGT
CCACGCTCGCCGGCGCTCTGCAGTTGCTGGCCATGGATACCAGGCCCGGCGTCGCGGCTGCTGTTGCCGCGCTGGTGCTC
GCCGGAGTGCCGGTGTCCGCCGTCTTCGCGCTGCACCTCCTCGGGCAGGCGGCGGGTTCCGTTTTGCACCTCGTTTCTTG
ATTGACT-----ATCATTCATTCGCCCGCAGTGTGTGCTATCTGTGTCTATAGATAAT--TAGATACACAGTGCAATGGA
GATATGTAATTCTTTTGGCTTTAGCTTAGTCGATTACGCATACATGCAGATTAATAGTACTAGTACTTTTTTCTTGTTGC
ACTGGTTTCAGCGAGCTAATAAAGTCAATGAGACAGCTTGTCAAATGGCCTGCTTCAACGACCCAAAGTCTAATGCTTTG
TGGAATGTGATAACAACACCAGGCTGATCACTGACTATTGGCTCGCTGAAACCAGTGCAAAGTATATAATGACCCATATA
TAGTGATTTCAGTGATTCCTATTTCATATTTTGTAAAAGATTGAGACCGATTATTTCAAAGGAGTGTCATACACATTTTT
GTAAGTGATTCCAGTTTCATATTTCACAAATTTCAGTGAAACTAGGTATTTTAAGAGAGTGACTAGTCTAAAAAATTCAA
ATTATATCACATATTTGAAAAGAAAAATGATTTCAAAAGTGGTTATTTCCAGTATTTCATAGATTGAATTGCTAACTTCA
GCAATTGTAGTAGGTTATTTCAATTATTTCACAGATTGGATCACCAATTTCACAAATTGAAATAACATTTTCGCACACTG
CAAAACAAATTCCATCACATTCAATTTCACGAATTGTACTCCATCCATTCCCTTATATAAGCCCACTTCGTTTTTCGTGT
CAAACATTGACTTATAATTTTGGTCAACAAAATATGGATTATATGTCATAAAAAATATAGCATCGGAAAGTTCTTTGAAA
TGTGCATTCAATGAAATAATTTTTGTGACACATAACTCACTTTTTGTTGGTAAAATTACTGGTTAAAGTTAGACATAAAA
ATATGAAGTGGCCTTGTAGATCTCCTCGACTATAGTCGCAAACCTCTTAGATGTGTTGACCGCCATGCTTTCTACACCGA
TGATCAGTGTATGACACATTAGTAGTATCATCATATTCCACAGATATTTTGTGCACTTGATATGCCCAACTGATTATCTT
GTCACAAAGTGTAAGAATGCACACTTTCAATGATCACAACTTTATTTGTGAGTGCACAAACAATGCATTTTGGAAAGCTT
CATTGACACATGTGATGCAACTTGAATTGATAATATAGCCTCGGCACTTCACTGCGGCGTATGTGATCTGTGGTGACACA
ATGGTGCCTTTGGCAAACATTTTAGTAGAGGTGGACACCTTCCGATGCAGTGTCATGGGCAACAACCTCAACGTTTCTGG
TTAGTCTCCCTCCGTTCTGAAATATAGGTCGCTGGGGACCTTGTTCCGACTTGGTGAAAACATGCAAATTGACCTTAATA
CCAATCCGCCCCCATCTTCTTCCTTAGCCCGTCTTCTACCTCCGCCTCCGCCCTCCACCTCTAGTAGATGCATGTGTATG
TAAAAAATCACACCAATATTTTACCGATCACAATGACACCTCACGCTATGATAAAAGTCTTACAAAATATATTTTGAGGC
CATGGTTGAGCAAGAACAAGGAGGGGACAACATCAAAACATGCAAACATTTAGTAATATAGAAAGTTTTTTGGAAACTAC
ACCGGTTAAAACTAGTCTCACACAGTTGCAAAAATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCCTAGGTTGAATGAAAGTTGTAGGTTATATAATAGTGCTAAAAA
AATTCTCTCGTTGCTAGGTTTATATAATAGTGTTGGTCTTGAATGTGGGCAGTTTCTACATTGAGTCACCGGAAAAAAAG
TGTGCAGGTGTAAGCCGTGAAACGGCTGATAGACCTCACGTCCTCGAGGCAATAGGCACAATTGGCATGTGCCAACCCTG
CTATGCAGTCCGCTGGACCGTAAGCCGTGTAGGCAGTTGGAACGATCCCCGATCTCCTCAACTGCAGTGGCGAACTCCCG
ACATGTTCACCGCATGCTTGCTGAACAAGTAATGAGTGCACCGCACGATAACAATATCAGCCTATTCCGCTAATATCTTG
TGGGCATGTGATGCCCGATTAATTATCTTGTCAAAAAGTTTAAGATTGCACACCATGTCAATGATGATCACTTATTTACG
TGCCCACGGACAACATATGCCTCTTGGAGAGCTTCATTGATGCATGTGCTGCAAACTGGAAGTGTTCGTATCGCCTCTGC
AACAACACTAGGGCGTATGTGATCTTTTCTGCCACAACGGTGTTCGTCCACCAATCTCTCTCCTTCCTCTGTTTTCAACC
ATGGGCCTCCTGATTTCCAATTAGCTGATGCCATGTTAGCCTGTAGGTTCTAATCCGTGACATTGAGTCCGTAAGTGTAG
CATCTCTCTTACAGAATTTACAGAGGATACAATCCTCTGTAAGTCAAAATTTCTATTCCCATGTCTAGTAAATGTCATTT
CTCTTCCCTTTTTCAAGAACCCCGTGAATCGGAATTTCTCCTTAAACCGTCCATACATATACCACGTACTTGCAGTATAT
CACGTTGGGTGGAAACCGTCTGGCTAAATGGCGCGTGAATTACTCACACAACGCGTCACACTTATTCACACCATGTGATC
ATCGTCAGAGGTGATCAAGTGGATATGAGAGCTGCAAATGGATGACTCGATTGATAGCAGCTGGTCGATATGGACGTCTC
TGCTTGCCGGTGCTAGCTATATATCCCTAGTAGCATTAGACTTTTCGAGAGCTCTTTTTGGGCCGAGGACTAATTCGTGG
ATTGATCAATTAAAAAACCTAGAAAAGAGCCTCGAGGTAGCTGGGCGATGAGACGGTGACATATAATCAGAGAAAGAAAA
ATGATAAACCCACGTACAGTAGGTGATCGCTGGTTCCACCGGCGGCCAGCACACGATTTCTCGTGATGTACGCGATGATT
AATTAATGTGCACGTGTTTATTGATATCTTCGTTGGCTGAAAAAAGAATTCACATCGATCCAGAATGCATAGCATCTTCT
TCCAACAGTGCATCATATGAAGTCAAAATTGATCACTGAAAAAGCGTCGATAAATCGACGGGTTGGTATATATAGACGTC
TCCGATGTGTTATCCTATGGTAGCTAGAAGCATTATACTCTCCCTCTATATCAAAATGTAAGATGTTTTTGATTTTGCAT
AGGGCATAAAAAACGTCGTGGTACATTTTGTTATAGAGAGCGTACTTTGCAATGCATGGATGAATGAACTAATTAGCCTT
TTCTAGTAGGATACTTGGATGAATTATGATTTAATTAAATTCGAGGTACTACTGTACTTGTAGGATACTTGGATGAACTA
TGATTTAATTAAATTCGAGGTACCCTGTACCTCCGTCCTGGTTTATTAGTCTCACCCGTATCTAGGGTCATATTTTGACT
ATGATTTTAATTAATAAAATATAAGTTATACATAAAAAAAATAATATTGTCAAAAACTACGTTCAAATATAAATCCAACG
ATATATTTTTTGATGACATGTATTAATATTTTGATAGTTAAATATATGGTCAAATTTTGACATAAAATACGAAGAGACCA
ATAAACTAGGGTGAAGAAAATGACAGAATAGTTCAACCCAAGTGTTGCGACTCGACAGGCCCTATACGTTGGTGACGTAT
GCGATGATTATGATCATCTGCGCATGTATTCTTAGTCAATGAAATTTAGAATTCAGGTCGATGCAAAAAAAAAAAAGTTG
GTGTATTCAGCATGTCCGGTCAACGGCGTTCCTTCCAACAGAAAGTGATAAAGGAAAAAAAATAATCAATCTTACTCTAT
ATGAAGTCCGAAATCCATTGCGGAAGACCGGCGTCGTTGATCATACAAATTAATTTAGTAAGTGTATATACCCATCCAGA
GAACATGTTGCTTGGACTTTTTTCTTAAAATTATTATCCCGCCGCCCAGGCCCCAGGGTGTCGAGGCACTACCAGTTCAA
CTCATATCAAAATGATATATACTCTTTTTAATTATCGAGGCCCTACCAGTTCAACTCATCGATGATTGATCATTTAATCG
ATGAAACTGAGAGGTGCGCGGTAGGCAGGCAGGTGTTAGTTGGAATCCTTCGTGGTTGCCGTGTTGTTGCTTAACGAGCT
AGCTACGTGATTACCACAATTAAACAACGAGATTCCAAATCACCGGACAAAACCCGCCAAGGATAACCGTCCATGAAACC
GCGTGAATTCTCTGTACCACTACCTATAAGACGCAACACCCACTCGACCTGCATCTCTCGCCATTATTCATTACTCACCT
CCATTGCTTCCTGCTCCTAGCTCCCTCCGTCTCTTTCTTGGTGTCTCATCTTCTTGTGCGAGAGATCACACGTTCCTTTC
ATTCTTCAACCAATTCGATTCCATCGATGTCGTCTGCCCTCTCCTTACCGGCGACGGTGCGGCCGGCATCCTCCGGGCTT
GGGCGCCAGCTCTACGGGTCGCCGCCGCGCCACGGTCCAGTGCTGCGACCGAGGAGGCCGCAGGCGGAGCCATGCCACGG
TCTGCTGGCGCTGCGACCGAGGACGAGGCGCTGCGGCGCTTTCGGGCAGGACCACTACGGTGGCGCGCTGGTGGACGAGG
GCATGGCGGTGCTCCGGCGGAGGATCCGAGAGGCGCGGATGGCCGAGACCAACTACGAGGCGCCGGCGGGATGGGCGGAC
TGGGAGAAGCGCTACTACCCGGCCTACGTCTCCGACGTGTCCGCGCTCGCCGGAGCGCTGCAGCTGCTGGCCATGGGCAC
CAGGCCTGGCGTCGCTGCGGCCGTAGCCGCGCTGCTGTTCGCCGGCGTGCCGGTCTCCGCTCTCGCAGTCCTGCACTTCC
TCGGTCAGGCGGCGGAATCCGTTCTGCACCATGTTTCTTGATTGATTCATCATTCATTCGTACGCAGTGTGTGCTCTACG
TGTCTCTATAGTTTATACATAGACAATGGAAAGGAGATACCCAATTCTCTAGGTCTATGGACCAAACTGACCATCC-GCG
TAAGTTTTGTGACCCT----------------------------------------------------------------
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>chr3B_940
TCTTCTTCTGCTC-------------------------------------------------------------------
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-----GA-GAGATCACACGCTCGGTTTATTCGTTAGCAGGTTCGTTCGGTGAAATCGATGTCGTCCGCCGCCTCATTGCA
GTCGACGATGCGGCCGGCAGCACCAGGACTTGGGCGCCAGCTGCACGGGTCGCCGTCGCCGCCCTGCCACGGTCCGGTGC
TGCGACCGAGGAGTCCGCGGGCGGTGCCGATGGC------------------------GACGGTGCGCTGCGGCGCGTTC
CGCCGGG---ACCACTACGGGGGCGCGCTGGCGGACGAGGGCATGGCGGTGCTCCGGCGGAGGATCCGCGAGGCGCGGAT
GGCCGAGACCAACTACGAGGCGCCGCCGGGGTGGGCGGCCTGGGAGAAGCGCTACTACCGGGCGTATGTCTCCGATGTGT
CCACGCTCGCCGGCGCTCTGCAGTTGCTGGCCATGGACACCAGGCCGGGCGTCGCGGCTGCTGTTGCCGCGCTGGTGCTC
GCCGGATTGCCGGTGTCCGCCGTCTTCGCGCTGCACCTCCTCGGGCAGGCGGCGGGATCCGTTTTGCACCTTGTTTCTTG
A-------------------------------------------------------------------------------
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>chr3A_942
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-------------------------------------------------------------------------ATCTTCT
TGACTCAGGAGATCACACGCTCGGCTTATTCGTTAGCAGATTCG----GTGAAATCGATGTCGTCCGCCGTCTCATTGCA
GTCGACGATGCGGCCAGCAGCCCCGGGACTTGGGCGCCAGCTGCACGGGTCGCCG------CCCTGCCACGGTCCGCTGC
TCCGACCGAGGAGGCCGCGGGCGGT------GGC------------------------GACGGTGTGCTGCGGTGCCTTC
CGGCGGG---ACCACTACGGGGGCGCGCTGGTGGACGAGGGCATGGCGGTGCTCCGGCGGAGGATCCGGGAGGCGCGGAT
GGCCGAGACCAACTACGAGGCGCCGCCGGGGTGGGCGGCCTGGGAGAAGCGCTACTACCGGGCGTACGTCTCTGATGTGT
CCACGCTCGCCGGCGCTCTGCAGTTGCTGGCCATGGATACCAGGCCCGGCGTCGCGGCTGCTGTTGCCGCGCTGGTGCTC
GCCGGCGTGCCGGTGTCCGCCGTCTTCGCGCTGCACCTCCTTGGGCAGGCGGCGGGATCCGTTTTGCACCTTGTTTCTTG
ATTGACT-----ATCATTCATTCGCCGGTAGCGTGTGCTATCTGTGTCTGTAGATAAT--TAGATACACAGTGCAATGGA
GATATGTAATTCT-------------------------------------------------------------------
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>chr3A_957
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---------AGATCACACGCTCGGATTATTCGTTAGCAGATTCG----GTGAAATCGATGTCGTCCGCCGTCTTATTGCA
GTCGACGATGCGGCCAGCAGCCCCGGGACTTGGGCGCCAGCTGCACAGGTCGCCG------CCCTGCCACGGTCCGCTGC
TCCGACCGAGGAGGCCGCGGGCGGT------GGC------------------------GACGGTGTGCTGCGGTGCCTTC
CGGCGGG---ACCACTACGGGGGCGCGCTGGTGGACGAGGGCATGGCGGTGCTCCGACGGAGGATCCGGGAGGCGCAGAT
GGCCGAGACCAACTACGAGGCGCCGTCGGGGTGGGCGGCCTTGGAGAAGCGCTACTACCAGGCGTACGTCTCTGATGTGT
CCACGCTCGCCGGTGCTCTGCAGTTGCTGGCCATAGATACCAGGCCCGGCGTCGCGGCTGCTGTTGCCGCGCTGGTGCTC
GCCGGCGTGCCGGTGTCCGCCATCTTCGCGCTGCACCTCCTTGGGCAGGCGGCGGGATCCGTTTTGCACCTTGTTTCTTG
ATTGACT-----ATCATTCATTCGCCGGCAGCGTGTGCTATCTGTGTCTGTAGATAAT--TAGATACACAGTGCAATGGA
GATATGTAATTCT-------------------------------------------------------------------
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>SNPs
SS----------SS-------------------S--------S--S----S-S--------SS------S----------
S----S-----S--S----------S---------S--------SSSSSSSSSSSSSSSSSSSSSSSSSS--------S-
-------------------------------S---S-SS---S-------S-----S----SS-----S---S---S---
----S------------S-----------------SS----S-SS------SS----SS---------S-----S-SSSS
----------S--S--S--------SS----SS---S-S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---------S--SSS-SSSS-------------------------------------SSS--------S-S--S------
-------------------------------------------SS----SSSSSSSSSSSSSSSSSS-------------
-S-----S-SS-SS-SSSSSSSSSSSSSSSS---------S-------------SSSS----------------------
--------------------------SSSSSSS-------------S---------------S-----------------
-------------------------S--S------------S--------------------------------------
--S---------------------S-------S----------------S---S---S-------------S-------S
--------------------SSSS------------S-S-SSSSSS--------S------------------------S
--------S----------S------S----S------------------------------------------S-----
----------------------S---------------------------------------------S-----------
---S-----------------------------------------------SS-S---S-------------S-------
-------SSS----------------------------------------------------------------------
-----------------------------S--------------------------------------------------
---S------------S-----------------------------------------------S-S-------------
---------------------S--------------S-------S------------------S---------S------
-------S--SS--S-------S-SS----S---S----S--S-SSSSSSSSSSSSSSSS--S---S---S-S---S---
-------------S-S----------------------------------------------------------------
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------------------------------------------------------S----S----------------S---
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_277
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-----------------TCAGCTGCGTTCCTTCCAAT-------------------------------------------
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>reverse_6795
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--------------------------------------------------------------------------CCCTTC
AACGAGTCGACCAA------------------------------------------------------------------
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-------------------------------------------------------------------------
