Multiple sequence alignment - TraesCS3A01G015700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G015700 chr3A 100.000 3158 0 0 1 3158 10359975 10363132 0.000000e+00 5832.0
1 TraesCS3A01G015700 chr3A 79.773 529 84 14 1050 1559 10750071 10750595 2.320000e-96 363.0
2 TraesCS3A01G015700 chr3A 79.584 529 85 14 1050 1559 10720031 10720555 1.080000e-94 357.0
3 TraesCS3A01G015700 chr3A 78.728 456 74 14 1050 1486 10775114 10775565 1.850000e-72 283.0
4 TraesCS3A01G015700 chr3A 75.969 516 88 22 1050 1535 11535852 11536361 1.890000e-57 233.0
5 TraesCS3A01G015700 chr3D 92.193 2690 154 19 266 2921 4504143 4506810 0.000000e+00 3753.0
6 TraesCS3A01G015700 chr3D 97.992 249 4 1 1 249 4500953 4501200 6.260000e-117 431.0
7 TraesCS3A01G015700 chr3D 72.845 696 151 30 1400 2081 4472068 4471397 1.480000e-48 204.0
8 TraesCS3A01G015700 chr3D 80.859 256 44 4 1050 1304 5051929 5052180 2.480000e-46 196.0
9 TraesCS3A01G015700 chr3D 72.403 616 139 25 1031 1632 9764634 9764036 1.950000e-37 167.0
10 TraesCS3A01G015700 chr3D 71.157 579 145 18 1062 1632 4649174 4649738 1.190000e-24 124.0
11 TraesCS3A01G015700 chr3D 79.012 162 30 3 1067 1226 9679287 9679128 1.200000e-19 108.0
12 TraesCS3A01G015700 chr3D 71.951 246 56 9 1395 1632 4476261 4476501 3.400000e-05 60.2
13 TraesCS3A01G015700 chrUn 88.987 454 23 8 872 1304 303838905 303839352 1.290000e-148 536.0
14 TraesCS3A01G015700 chrUn 88.987 454 23 8 872 1304 311149435 311149882 1.290000e-148 536.0
15 TraesCS3A01G015700 chrUn 91.748 206 16 1 1401 1606 36065276 36065072 5.160000e-73 285.0
16 TraesCS3A01G015700 chrUn 86.709 158 9 8 696 841 303838748 303838905 7.010000e-37 165.0
17 TraesCS3A01G015700 chrUn 86.709 158 9 8 696 841 311149278 311149435 7.010000e-37 165.0
18 TraesCS3A01G015700 chrUn 71.542 759 171 32 1341 2081 35963582 35962851 2.520000e-36 163.0
19 TraesCS3A01G015700 chrUn 72.366 579 128 27 1067 1632 34668026 34668585 1.520000e-33 154.0
20 TraesCS3A01G015700 chrUn 71.821 582 131 28 1065 1632 34594817 34595379 5.490000e-28 135.0
21 TraesCS3A01G015700 chrUn 71.821 582 131 28 1065 1632 253531277 253531839 5.490000e-28 135.0
22 TraesCS3A01G015700 chrUn 71.821 582 131 27 1065 1632 320896581 320896019 5.490000e-28 135.0
23 TraesCS3A01G015700 chrUn 71.821 582 131 27 1065 1632 348296844 348296282 5.490000e-28 135.0
24 TraesCS3A01G015700 chrUn 70.973 565 142 21 1076 1632 35604263 35603713 7.160000e-22 115.0
25 TraesCS3A01G015700 chrUn 70.884 577 146 21 1064 1632 348470663 348471225 7.160000e-22 115.0
26 TraesCS3A01G015700 chrUn 70.884 577 146 21 1064 1632 455423497 455424059 7.160000e-22 115.0
27 TraesCS3A01G015700 chrUn 70.646 511 119 24 1571 2071 43589717 43589228 2.020000e-12 84.2
28 TraesCS3A01G015700 chrUn 70.646 511 119 24 1571 2071 327179587 327179098 2.020000e-12 84.2
29 TraesCS3A01G015700 chrUn 70.646 511 119 24 1571 2071 366320711 366321200 2.020000e-12 84.2
30 TraesCS3A01G015700 chr1A 97.083 240 7 0 2919 3158 11240103 11240342 3.790000e-109 405.0
31 TraesCS3A01G015700 chr1A 76.348 575 66 25 2381 2911 25574342 25573794 8.750000e-61 244.0
32 TraesCS3A01G015700 chr1A 77.482 413 61 13 2512 2894 29195079 29194669 5.300000e-53 219.0
33 TraesCS3A01G015700 chr6A 96.680 241 8 0 2918 3158 601864529 601864769 4.910000e-108 401.0
34 TraesCS3A01G015700 chr5B 96.296 243 9 0 2916 3158 711285522 711285280 1.760000e-107 399.0
35 TraesCS3A01G015700 chr7B 96.281 242 9 0 2917 3158 677059357 677059116 6.350000e-107 398.0
36 TraesCS3A01G015700 chr5A 95.918 245 9 1 2915 3158 465259925 465260169 2.280000e-106 396.0
37 TraesCS3A01G015700 chr2B 95.918 245 9 1 2915 3158 298559110 298558866 2.280000e-106 396.0
38 TraesCS3A01G015700 chr2B 96.218 238 9 0 2921 3158 608697294 608697057 1.060000e-104 390.0
39 TraesCS3A01G015700 chr7A 96.250 240 9 0 2919 3158 664842201 664841962 8.210000e-106 394.0
40 TraesCS3A01G015700 chr5D 96.234 239 9 0 2919 3157 148095106 148094868 2.950000e-105 392.0
41 TraesCS3A01G015700 chr7D 81.377 247 33 5 2685 2918 597670665 597670911 4.160000e-44 189.0
42 TraesCS3A01G015700 chr2D 72.837 578 133 16 1064 1635 35231122 35230563 3.240000e-40 176.0
43 TraesCS3A01G015700 chr1B 77.273 308 58 10 1858 2156 63934498 63934194 1.510000e-38 171.0
44 TraesCS3A01G015700 chr1B 92.500 40 3 0 2767 2806 48903365 48903326 1.220000e-04 58.4
45 TraesCS3A01G015700 chr1D 76.568 303 59 10 1863 2156 44637585 44637286 4.220000e-34 156.0
46 TraesCS3A01G015700 chr3B 77.835 194 34 7 1036 1226 13821712 13821525 9.260000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G015700 chr3A 10359975 10363132 3157 False 5832.0 5832 100.0000 1 3158 1 chr3A.!!$F1 3157
1 TraesCS3A01G015700 chr3A 10750071 10750595 524 False 363.0 363 79.7730 1050 1559 1 chr3A.!!$F3 509
2 TraesCS3A01G015700 chr3A 10720031 10720555 524 False 357.0 357 79.5840 1050 1559 1 chr3A.!!$F2 509
3 TraesCS3A01G015700 chr3A 11535852 11536361 509 False 233.0 233 75.9690 1050 1535 1 chr3A.!!$F5 485
4 TraesCS3A01G015700 chr3D 4500953 4506810 5857 False 2092.0 3753 95.0925 1 2921 2 chr3D.!!$F4 2920
5 TraesCS3A01G015700 chr3D 4471397 4472068 671 True 204.0 204 72.8450 1400 2081 1 chr3D.!!$R1 681
6 TraesCS3A01G015700 chrUn 303838748 303839352 604 False 350.5 536 87.8480 696 1304 2 chrUn.!!$F7 608
7 TraesCS3A01G015700 chrUn 311149278 311149882 604 False 350.5 536 87.8480 696 1304 2 chrUn.!!$F8 608
8 TraesCS3A01G015700 chr1A 25573794 25574342 548 True 244.0 244 76.3480 2381 2911 1 chr1A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 3547 0.322648 AACTACGTACCCACAAGGCC 59.677 55.0 0.0 0.0 40.58 5.19 F
1260 4219 0.317160 ACATCGTGTTCGCTCCTTCA 59.683 50.0 0.0 0.0 36.96 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 4638 0.036010 AGACGAACCAGCATCCCAAG 60.036 55.0 0.0 0.0 0.00 3.61 R
2253 5248 0.324943 GTCTTTGTAGCAGAGGGGCA 59.675 55.0 0.0 0.0 35.83 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.567776 TTGAGAAGACCTAAAATTCATGTACAA 57.432 29.630 0.00 0.00 0.00 2.41
199 200 3.691118 GCACTGAATTAGGCAAGACATCA 59.309 43.478 0.00 0.00 0.00 3.07
249 250 7.278868 CAGATTACTAGCAACAACTCCTAAAGG 59.721 40.741 0.00 0.00 0.00 3.11
252 253 5.791666 ACTAGCAACAACTCCTAAAGGTAC 58.208 41.667 0.00 0.00 36.34 3.34
254 255 4.895961 AGCAACAACTCCTAAAGGTACTC 58.104 43.478 0.00 0.00 38.49 2.59
255 256 4.593634 AGCAACAACTCCTAAAGGTACTCT 59.406 41.667 0.00 0.00 38.49 3.24
258 259 4.895961 ACAACTCCTAAAGGTACTCTTGC 58.104 43.478 0.00 0.00 38.49 4.01
259 260 4.254492 CAACTCCTAAAGGTACTCTTGCC 58.746 47.826 0.00 0.00 38.49 4.52
260 261 2.838813 ACTCCTAAAGGTACTCTTGCCC 59.161 50.000 0.00 0.00 38.49 5.36
261 262 2.170817 CTCCTAAAGGTACTCTTGCCCC 59.829 54.545 0.00 0.00 38.49 5.80
262 263 1.134491 CCTAAAGGTACTCTTGCCCCG 60.134 57.143 0.00 0.00 38.49 5.73
263 264 1.553704 CTAAAGGTACTCTTGCCCCGT 59.446 52.381 0.00 0.00 38.49 5.28
264 265 0.769247 AAAGGTACTCTTGCCCCGTT 59.231 50.000 0.00 0.00 38.49 4.44
292 3219 0.476771 AAAAGGAGAAGGAACGGGCA 59.523 50.000 0.00 0.00 0.00 5.36
295 3222 0.698818 AGGAGAAGGAACGGGCAAAT 59.301 50.000 0.00 0.00 0.00 2.32
297 3224 2.307686 AGGAGAAGGAACGGGCAAATTA 59.692 45.455 0.00 0.00 0.00 1.40
298 3225 3.086282 GGAGAAGGAACGGGCAAATTAA 58.914 45.455 0.00 0.00 0.00 1.40
299 3226 3.508402 GGAGAAGGAACGGGCAAATTAAA 59.492 43.478 0.00 0.00 0.00 1.52
300 3227 4.021807 GGAGAAGGAACGGGCAAATTAAAA 60.022 41.667 0.00 0.00 0.00 1.52
301 3228 5.337250 GGAGAAGGAACGGGCAAATTAAAAT 60.337 40.000 0.00 0.00 0.00 1.82
302 3229 5.720202 AGAAGGAACGGGCAAATTAAAATC 58.280 37.500 0.00 0.00 0.00 2.17
313 3240 6.089417 GGGCAAATTAAAATCGACTCACTTTG 59.911 38.462 0.00 0.00 0.00 2.77
359 3286 2.545113 GCCCCGTTTGTTTCTTCCTTTC 60.545 50.000 0.00 0.00 0.00 2.62
362 3289 3.883489 CCCGTTTGTTTCTTCCTTTCTCT 59.117 43.478 0.00 0.00 0.00 3.10
375 3302 6.905776 TCTTCCTTTCTCTCTCCCAAAGATAT 59.094 38.462 0.00 0.00 32.19 1.63
614 3541 5.349543 CCATCAAACTAAACTACGTACCCAC 59.650 44.000 0.00 0.00 0.00 4.61
615 3542 5.528043 TCAAACTAAACTACGTACCCACA 57.472 39.130 0.00 0.00 0.00 4.17
616 3543 5.911752 TCAAACTAAACTACGTACCCACAA 58.088 37.500 0.00 0.00 0.00 3.33
617 3544 5.984926 TCAAACTAAACTACGTACCCACAAG 59.015 40.000 0.00 0.00 0.00 3.16
618 3545 4.525912 ACTAAACTACGTACCCACAAGG 57.474 45.455 0.00 0.00 43.78 3.61
619 3546 2.174363 AAACTACGTACCCACAAGGC 57.826 50.000 0.00 0.00 40.58 4.35
620 3547 0.322648 AACTACGTACCCACAAGGCC 59.677 55.000 0.00 0.00 40.58 5.19
621 3548 0.832983 ACTACGTACCCACAAGGCCA 60.833 55.000 5.01 0.00 40.58 5.36
769 3699 2.352388 GAATCGGGGTTTTGATCGACA 58.648 47.619 0.00 0.00 34.40 4.35
770 3700 2.483014 ATCGGGGTTTTGATCGACAA 57.517 45.000 0.00 0.00 34.40 3.18
827 3766 2.353323 CTTCACGGGTAGGCCTTAAAC 58.647 52.381 12.58 2.12 34.45 2.01
1260 4219 0.317160 ACATCGTGTTCGCTCCTTCA 59.683 50.000 0.00 0.00 36.96 3.02
1307 4266 1.680338 GTGCACTTTGACCTTGGACT 58.320 50.000 10.32 0.00 0.00 3.85
1330 4292 3.660111 GCGGCTGCGTCAACCTTT 61.660 61.111 0.00 0.00 0.00 3.11
1337 4323 0.378962 TGCGTCAACCTTTTGAACCG 59.621 50.000 0.00 0.00 43.52 4.44
1536 4522 0.462789 CATGCCATTCAAGCCCCTTC 59.537 55.000 0.00 0.00 0.00 3.46
1542 4528 2.250924 CATTCAAGCCCCTTCAAGGTT 58.749 47.619 1.78 0.00 31.93 3.50
1560 4546 5.852282 AGGTTATATTGGTTTCCATGTGC 57.148 39.130 0.00 0.00 31.53 4.57
1565 4551 5.743636 ATATTGGTTTCCATGTGCTGTTT 57.256 34.783 0.00 0.00 31.53 2.83
1567 4553 1.686052 TGGTTTCCATGTGCTGTTTCC 59.314 47.619 0.00 0.00 0.00 3.13
1584 4570 2.401583 TCCATGATGAACGAACCCTG 57.598 50.000 0.00 0.00 0.00 4.45
1636 4622 0.385751 GGGCAATCTCATCTCGACGA 59.614 55.000 0.00 0.00 0.00 4.20
1652 4638 2.658224 CGACGACATTTCCACGTTTCAC 60.658 50.000 0.00 0.00 40.29 3.18
1667 4653 1.909700 TTCACTTGGGATGCTGGTTC 58.090 50.000 0.00 0.00 0.00 3.62
1675 4661 2.045926 ATGCTGGTTCGTCTGGGC 60.046 61.111 0.00 0.00 0.00 5.36
1684 4670 0.884704 TTCGTCTGGGCTGCTTGTTC 60.885 55.000 0.00 0.00 0.00 3.18
1720 4706 4.232221 CTGGTTGTGCACAAATGAAGATC 58.768 43.478 32.61 17.50 37.63 2.75
1737 4723 5.348724 TGAAGATCGCATACTTGAGTTTGAC 59.651 40.000 5.88 0.00 0.00 3.18
1776 4762 1.852942 CTATCATCACCGTTCCACCG 58.147 55.000 0.00 0.00 0.00 4.94
1825 4811 3.329497 ATCCAGGCTGAGGATGACA 57.671 52.632 17.94 0.00 44.04 3.58
1841 4827 4.640201 GGATGACACTATTGGCTTTGCTAA 59.360 41.667 0.00 0.00 32.83 3.09
1849 4835 3.296322 TTGGCTTTGCTAAATTGTCCG 57.704 42.857 0.00 0.00 0.00 4.79
1850 4836 1.543802 TGGCTTTGCTAAATTGTCCGG 59.456 47.619 0.00 0.00 0.00 5.14
1852 4838 1.202348 GCTTTGCTAAATTGTCCGGCT 59.798 47.619 0.00 0.00 0.00 5.52
1946 4932 9.241317 CATTGAAATATGTAACATTCTTGAGCC 57.759 33.333 0.00 0.00 0.00 4.70
1968 4954 5.486526 CCACCTCCTCATATTGATAGAAGC 58.513 45.833 0.00 0.00 0.00 3.86
2072 5064 1.936547 GTCGATGCAATCCAAGAGACC 59.063 52.381 0.00 0.00 41.39 3.85
2074 5066 3.031013 TCGATGCAATCCAAGAGACCTA 58.969 45.455 0.00 0.00 41.39 3.08
2076 5068 4.081142 TCGATGCAATCCAAGAGACCTAAA 60.081 41.667 0.00 0.00 41.39 1.85
2081 5073 5.596361 TGCAATCCAAGAGACCTAAAACAAA 59.404 36.000 0.00 0.00 0.00 2.83
2082 5074 6.267471 TGCAATCCAAGAGACCTAAAACAAAT 59.733 34.615 0.00 0.00 0.00 2.32
2083 5075 7.154656 GCAATCCAAGAGACCTAAAACAAATT 58.845 34.615 0.00 0.00 0.00 1.82
2088 5080 9.457436 TCCAAGAGACCTAAAACAAATTATACC 57.543 33.333 0.00 0.00 0.00 2.73
2089 5081 9.462606 CCAAGAGACCTAAAACAAATTATACCT 57.537 33.333 0.00 0.00 0.00 3.08
2094 5089 9.901172 AGACCTAAAACAAATTATACCTCGAAT 57.099 29.630 0.00 0.00 0.00 3.34
2117 5112 4.002906 ACCATGCTTTCACGAGTTTCTA 57.997 40.909 0.00 0.00 0.00 2.10
2129 5124 5.889853 TCACGAGTTTCTATACACCAGGTAT 59.110 40.000 0.00 0.00 44.76 2.73
2145 5140 7.347222 ACACCAGGTATTTTCTCATCCATAGTA 59.653 37.037 0.00 0.00 0.00 1.82
2146 5141 8.378565 CACCAGGTATTTTCTCATCCATAGTAT 58.621 37.037 0.00 0.00 0.00 2.12
2164 5159 9.593134 CCATAGTATTTATATTGTGAGAGGAGC 57.407 37.037 0.00 0.00 0.00 4.70
2166 5161 7.863901 AGTATTTATATTGTGAGAGGAGCCT 57.136 36.000 0.00 0.00 0.00 4.58
2168 5163 9.554053 AGTATTTATATTGTGAGAGGAGCCTAT 57.446 33.333 0.00 0.00 0.00 2.57
2183 5178 4.455877 GGAGCCTATTCCATTTATGTTCCG 59.544 45.833 0.00 0.00 37.20 4.30
2189 5184 7.604927 GCCTATTCCATTTATGTTCCGTACATA 59.395 37.037 4.12 4.12 45.62 2.29
2216 5211 7.946655 TGTTCGATCATCTATATTGTGGTTC 57.053 36.000 0.00 0.00 0.00 3.62
2217 5212 7.726216 TGTTCGATCATCTATATTGTGGTTCT 58.274 34.615 0.00 0.00 0.00 3.01
2221 5216 6.648310 CGATCATCTATATTGTGGTTCTTGCT 59.352 38.462 0.00 0.00 0.00 3.91
2227 5222 8.023021 TCTATATTGTGGTTCTTGCTAGTCAT 57.977 34.615 0.00 0.00 0.00 3.06
2229 5224 5.633830 ATTGTGGTTCTTGCTAGTCATTG 57.366 39.130 0.00 0.00 0.00 2.82
2238 5233 6.109156 TCTTGCTAGTCATTGACAACCTAA 57.891 37.500 18.57 6.49 34.60 2.69
2253 5248 8.472007 TGACAACCTAAACCTAATCAACAATT 57.528 30.769 0.00 0.00 0.00 2.32
2254 5249 8.356657 TGACAACCTAAACCTAATCAACAATTG 58.643 33.333 3.24 3.24 0.00 2.32
2255 5250 7.151976 ACAACCTAAACCTAATCAACAATTGC 58.848 34.615 5.05 0.00 0.00 3.56
2256 5251 6.280855 ACCTAAACCTAATCAACAATTGCC 57.719 37.500 5.05 0.00 0.00 4.52
2257 5252 5.186992 ACCTAAACCTAATCAACAATTGCCC 59.813 40.000 5.05 0.00 0.00 5.36
2258 5253 4.551702 AAACCTAATCAACAATTGCCCC 57.448 40.909 5.05 0.00 0.00 5.80
2287 5282 7.717875 TGCTACAAAGACAACTTAAGTTATGGT 59.282 33.333 20.15 14.10 36.32 3.55
2289 5284 7.506328 ACAAAGACAACTTAAGTTATGGTCC 57.494 36.000 23.48 12.48 36.32 4.46
2328 5323 8.604890 GTTATTATTAGTTGTCCTCACTCTTGC 58.395 37.037 0.00 0.00 0.00 4.01
2330 5325 1.040646 AGTTGTCCTCACTCTTGCGA 58.959 50.000 0.00 0.00 0.00 5.10
2356 5351 9.378551 AGATCCAAATCAAATGTCAAATGAATG 57.621 29.630 0.00 0.04 34.07 2.67
2450 5445 2.289547 AGCAATTTTTACGTCGCTGTGT 59.710 40.909 0.00 0.00 0.00 3.72
2518 5516 9.975218 AAAATACCTTGATACATAGAAACCACT 57.025 29.630 0.00 0.00 0.00 4.00
2524 5522 7.987458 CCTTGATACATAGAAACCACTGTATGT 59.013 37.037 0.00 0.00 35.51 2.29
2526 5524 8.942338 TGATACATAGAAACCACTGTATGTTC 57.058 34.615 0.00 0.00 35.51 3.18
2527 5525 8.758829 TGATACATAGAAACCACTGTATGTTCT 58.241 33.333 0.00 1.19 35.51 3.01
2588 5588 8.317679 TGGTTTTTATAATACTTTGCTGCCAAT 58.682 29.630 0.00 0.00 0.00 3.16
2675 5676 2.691526 ACTCCGAATCATGTAAGGCGTA 59.308 45.455 0.00 0.00 0.00 4.42
2749 5776 4.100963 ACACCACTGACAACAACTCTATCA 59.899 41.667 0.00 0.00 0.00 2.15
2828 5868 1.821216 ACCGGTTGATGGTCAATGAC 58.179 50.000 0.00 4.51 38.79 3.06
2844 5884 4.740268 CAATGACCACAACTCCATCATTG 58.260 43.478 10.00 10.00 45.90 2.82
2854 5894 3.110705 ACTCCATCATTGCTCTACACCT 58.889 45.455 0.00 0.00 0.00 4.00
2925 5967 3.460648 GGTGTGCTACCTAAGGCTG 57.539 57.895 3.79 0.00 46.51 4.85
2926 5968 0.107654 GGTGTGCTACCTAAGGCTGG 60.108 60.000 3.79 0.00 46.51 4.85
2927 5969 0.613777 GTGTGCTACCTAAGGCTGGT 59.386 55.000 1.78 1.78 41.28 4.00
2928 5970 0.902531 TGTGCTACCTAAGGCTGGTC 59.097 55.000 0.00 0.00 38.88 4.02
2929 5971 0.902531 GTGCTACCTAAGGCTGGTCA 59.097 55.000 0.00 0.00 38.88 4.02
2930 5972 1.486726 GTGCTACCTAAGGCTGGTCAT 59.513 52.381 0.00 0.00 38.88 3.06
2931 5973 2.698797 GTGCTACCTAAGGCTGGTCATA 59.301 50.000 0.00 0.00 38.88 2.15
2932 5974 2.965831 TGCTACCTAAGGCTGGTCATAG 59.034 50.000 0.00 0.00 38.88 2.23
2933 5975 2.966516 GCTACCTAAGGCTGGTCATAGT 59.033 50.000 0.00 0.00 38.88 2.12
2934 5976 3.243907 GCTACCTAAGGCTGGTCATAGTG 60.244 52.174 0.00 0.00 38.88 2.74
2935 5977 2.119495 ACCTAAGGCTGGTCATAGTGG 58.881 52.381 0.00 0.00 31.03 4.00
2936 5978 1.417890 CCTAAGGCTGGTCATAGTGGG 59.582 57.143 0.00 0.00 0.00 4.61
2937 5979 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
2938 5980 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
2939 5981 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2940 5982 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2941 5983 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2942 5984 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2943 5985 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2944 5986 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
2945 5987 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
2946 5988 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
2947 5989 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
2948 5990 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
2949 5991 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
2950 5992 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
2951 5993 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
2952 5994 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
2953 5995 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
2954 5996 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
2955 5997 7.223472 AGTGGGGAGTAACTTAGACTAGTAT 57.777 40.000 0.00 0.00 0.00 2.12
2956 5998 7.289310 AGTGGGGAGTAACTTAGACTAGTATC 58.711 42.308 0.00 0.00 0.00 2.24
2957 5999 7.059156 GTGGGGAGTAACTTAGACTAGTATCA 58.941 42.308 0.00 0.00 0.00 2.15
2958 6000 7.724951 GTGGGGAGTAACTTAGACTAGTATCAT 59.275 40.741 0.00 0.00 0.00 2.45
2959 6001 7.724506 TGGGGAGTAACTTAGACTAGTATCATG 59.275 40.741 0.00 0.00 0.00 3.07
2960 6002 7.309316 GGGGAGTAACTTAGACTAGTATCATGC 60.309 44.444 0.00 0.00 0.00 4.06
2961 6003 7.230913 GGGAGTAACTTAGACTAGTATCATGCA 59.769 40.741 0.00 0.00 0.00 3.96
2962 6004 8.798402 GGAGTAACTTAGACTAGTATCATGCAT 58.202 37.037 0.00 0.00 0.00 3.96
2968 6010 9.301897 ACTTAGACTAGTATCATGCATATGACA 57.698 33.333 6.97 4.57 45.54 3.58
2969 6011 9.566530 CTTAGACTAGTATCATGCATATGACAC 57.433 37.037 6.97 0.00 45.54 3.67
2971 6013 8.870075 AGACTAGTATCATGCATATGACACTA 57.130 34.615 6.97 7.92 46.40 2.74
2975 6017 7.773489 AGTATCATGCATATGACACTAGTCT 57.227 36.000 6.97 0.00 46.40 3.24
2976 6018 8.870075 AGTATCATGCATATGACACTAGTCTA 57.130 34.615 6.97 0.00 46.40 2.59
2977 6019 9.301897 AGTATCATGCATATGACACTAGTCTAA 57.698 33.333 6.97 0.00 46.40 2.10
2978 6020 9.566530 GTATCATGCATATGACACTAGTCTAAG 57.433 37.037 6.97 0.00 45.54 2.18
2979 6021 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
2980 6022 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
2981 6023 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
2982 6024 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
2983 6025 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
2984 6026 9.623000 TGCATATGACACTAGTCTAAGTTACTA 57.377 33.333 6.97 0.00 45.20 1.82
2985 6027 9.881529 GCATATGACACTAGTCTAAGTTACTAC 57.118 37.037 6.97 0.00 45.20 2.73
2989 6031 8.558973 TGACACTAGTCTAAGTTACTACCTTC 57.441 38.462 0.00 0.00 45.20 3.46
2990 6032 8.159447 TGACACTAGTCTAAGTTACTACCTTCA 58.841 37.037 0.00 0.00 45.20 3.02
2991 6033 9.176460 GACACTAGTCTAAGTTACTACCTTCAT 57.824 37.037 0.00 0.00 41.64 2.57
2997 6039 8.978472 AGTCTAAGTTACTACCTTCATATTGCA 58.022 33.333 0.00 0.00 0.00 4.08
2998 6040 9.595823 GTCTAAGTTACTACCTTCATATTGCAA 57.404 33.333 0.00 0.00 0.00 4.08
3001 6043 8.863872 AAGTTACTACCTTCATATTGCAAAGT 57.136 30.769 1.71 1.16 0.00 2.66
3002 6044 9.953565 AAGTTACTACCTTCATATTGCAAAGTA 57.046 29.630 1.71 0.08 0.00 2.24
3003 6045 9.953565 AGTTACTACCTTCATATTGCAAAGTAA 57.046 29.630 1.71 6.85 0.00 2.24
3004 6046 9.983804 GTTACTACCTTCATATTGCAAAGTAAC 57.016 33.333 20.51 20.51 39.37 2.50
3005 6047 9.727859 TTACTACCTTCATATTGCAAAGTAACA 57.272 29.630 1.71 0.00 0.00 2.41
3006 6048 8.807948 ACTACCTTCATATTGCAAAGTAACAT 57.192 30.769 1.71 0.00 0.00 2.71
3007 6049 9.899661 ACTACCTTCATATTGCAAAGTAACATA 57.100 29.630 1.71 0.00 0.00 2.29
3010 6052 9.019656 ACCTTCATATTGCAAAGTAACATAACA 57.980 29.630 1.71 0.00 0.00 2.41
3011 6053 9.507280 CCTTCATATTGCAAAGTAACATAACAG 57.493 33.333 1.71 0.00 0.00 3.16
3019 6061 9.713713 TTGCAAAGTAACATAACAGTAGTATCA 57.286 29.630 0.00 0.00 0.00 2.15
3020 6062 9.884636 TGCAAAGTAACATAACAGTAGTATCAT 57.115 29.630 0.00 0.00 0.00 2.45
3028 6070 8.657387 ACATAACAGTAGTATCATAGATGGCT 57.343 34.615 0.00 0.00 0.00 4.75
3029 6071 9.094578 ACATAACAGTAGTATCATAGATGGCTT 57.905 33.333 0.00 0.00 0.00 4.35
3030 6072 9.579768 CATAACAGTAGTATCATAGATGGCTTC 57.420 37.037 0.00 0.00 0.00 3.86
3031 6073 7.603180 AACAGTAGTATCATAGATGGCTTCA 57.397 36.000 3.03 0.00 0.00 3.02
3032 6074 7.789202 ACAGTAGTATCATAGATGGCTTCAT 57.211 36.000 3.03 0.00 0.00 2.57
3033 6075 8.200024 ACAGTAGTATCATAGATGGCTTCATT 57.800 34.615 3.03 0.00 0.00 2.57
3034 6076 8.654997 ACAGTAGTATCATAGATGGCTTCATTT 58.345 33.333 3.03 0.00 0.00 2.32
3042 6084 8.783833 TCATAGATGGCTTCATTTATTAGCTC 57.216 34.615 0.00 0.00 35.30 4.09
3043 6085 8.377799 TCATAGATGGCTTCATTTATTAGCTCA 58.622 33.333 0.00 0.00 35.30 4.26
3044 6086 9.006839 CATAGATGGCTTCATTTATTAGCTCAA 57.993 33.333 0.00 0.00 35.30 3.02
3045 6087 7.886629 AGATGGCTTCATTTATTAGCTCAAA 57.113 32.000 0.00 0.00 35.30 2.69
3046 6088 7.938715 AGATGGCTTCATTTATTAGCTCAAAG 58.061 34.615 0.00 0.00 35.30 2.77
3047 6089 7.776969 AGATGGCTTCATTTATTAGCTCAAAGA 59.223 33.333 0.00 0.00 35.30 2.52
3048 6090 7.088589 TGGCTTCATTTATTAGCTCAAAGAC 57.911 36.000 0.00 0.00 35.30 3.01
3049 6091 6.886459 TGGCTTCATTTATTAGCTCAAAGACT 59.114 34.615 0.00 0.00 35.30 3.24
3050 6092 7.066284 TGGCTTCATTTATTAGCTCAAAGACTC 59.934 37.037 0.00 0.00 35.30 3.36
3051 6093 7.066284 GGCTTCATTTATTAGCTCAAAGACTCA 59.934 37.037 0.00 0.00 35.30 3.41
3052 6094 8.619546 GCTTCATTTATTAGCTCAAAGACTCAT 58.380 33.333 0.00 0.00 32.26 2.90
3054 6096 9.896645 TTCATTTATTAGCTCAAAGACTCATCT 57.103 29.630 0.00 0.00 36.42 2.90
3056 6098 9.932699 CATTTATTAGCTCAAAGACTCATCTTG 57.067 33.333 0.00 0.00 44.82 3.02
3057 6099 9.678260 ATTTATTAGCTCAAAGACTCATCTTGT 57.322 29.630 0.00 0.00 44.82 3.16
3058 6100 8.709386 TTATTAGCTCAAAGACTCATCTTGTC 57.291 34.615 0.00 0.00 44.82 3.18
3059 6101 4.888326 AGCTCAAAGACTCATCTTGTCT 57.112 40.909 0.00 0.00 44.82 3.41
3067 6109 4.322567 AGACTCATCTTGTCTTGGAAAGC 58.677 43.478 0.00 0.00 45.70 3.51
3068 6110 3.070018 ACTCATCTTGTCTTGGAAAGCG 58.930 45.455 0.00 0.00 45.70 4.68
3069 6111 1.806542 TCATCTTGTCTTGGAAAGCGC 59.193 47.619 0.00 0.00 45.70 5.92
3070 6112 1.808945 CATCTTGTCTTGGAAAGCGCT 59.191 47.619 2.64 2.64 45.70 5.92
3071 6113 2.831685 TCTTGTCTTGGAAAGCGCTA 57.168 45.000 12.05 0.00 45.70 4.26
3072 6114 3.334583 TCTTGTCTTGGAAAGCGCTAT 57.665 42.857 12.05 0.00 45.70 2.97
3073 6115 3.002791 TCTTGTCTTGGAAAGCGCTATG 58.997 45.455 12.05 0.00 45.70 2.23
3074 6116 2.472695 TGTCTTGGAAAGCGCTATGT 57.527 45.000 12.05 0.00 45.70 2.29
3075 6117 2.778299 TGTCTTGGAAAGCGCTATGTT 58.222 42.857 12.05 0.00 45.70 2.71
3076 6118 3.932822 TGTCTTGGAAAGCGCTATGTTA 58.067 40.909 12.05 0.00 45.70 2.41
3077 6119 3.682858 TGTCTTGGAAAGCGCTATGTTAC 59.317 43.478 12.05 2.15 45.70 2.50
3078 6120 3.682858 GTCTTGGAAAGCGCTATGTTACA 59.317 43.478 12.05 5.56 45.70 2.41
3079 6121 3.932710 TCTTGGAAAGCGCTATGTTACAG 59.067 43.478 12.05 3.17 45.70 2.74
3080 6122 3.328382 TGGAAAGCGCTATGTTACAGT 57.672 42.857 12.05 0.00 0.00 3.55
3081 6123 4.459390 TGGAAAGCGCTATGTTACAGTA 57.541 40.909 12.05 0.00 0.00 2.74
3082 6124 4.823157 TGGAAAGCGCTATGTTACAGTAA 58.177 39.130 12.05 0.00 0.00 2.24
3083 6125 4.628333 TGGAAAGCGCTATGTTACAGTAAC 59.372 41.667 12.05 15.58 39.11 2.50
3084 6126 8.947657 CTTGGAAAGCGCTATGTTACAGTAACA 61.948 40.741 25.09 25.09 44.55 2.41
3115 6157 8.786826 TGTTACCACCTCTCATTAATTACTTG 57.213 34.615 0.00 0.00 0.00 3.16
3116 6158 7.335924 TGTTACCACCTCTCATTAATTACTTGC 59.664 37.037 0.00 0.00 0.00 4.01
3117 6159 5.193679 ACCACCTCTCATTAATTACTTGCC 58.806 41.667 0.00 0.00 0.00 4.52
3118 6160 5.192927 CCACCTCTCATTAATTACTTGCCA 58.807 41.667 0.00 0.00 0.00 4.92
3119 6161 5.066505 CCACCTCTCATTAATTACTTGCCAC 59.933 44.000 0.00 0.00 0.00 5.01
3120 6162 5.647658 CACCTCTCATTAATTACTTGCCACA 59.352 40.000 0.00 0.00 0.00 4.17
3121 6163 6.319658 CACCTCTCATTAATTACTTGCCACAT 59.680 38.462 0.00 0.00 0.00 3.21
3122 6164 7.498900 CACCTCTCATTAATTACTTGCCACATA 59.501 37.037 0.00 0.00 0.00 2.29
3123 6165 8.052748 ACCTCTCATTAATTACTTGCCACATAA 58.947 33.333 0.00 0.00 0.00 1.90
3124 6166 8.562892 CCTCTCATTAATTACTTGCCACATAAG 58.437 37.037 0.00 0.00 0.00 1.73
3125 6167 7.930217 TCTCATTAATTACTTGCCACATAAGC 58.070 34.615 0.00 0.00 0.00 3.09
3126 6168 7.555914 TCTCATTAATTACTTGCCACATAAGCA 59.444 33.333 0.00 0.00 38.81 3.91
3127 6169 7.706159 TCATTAATTACTTGCCACATAAGCAG 58.294 34.615 0.00 0.00 42.17 4.24
3128 6170 7.555914 TCATTAATTACTTGCCACATAAGCAGA 59.444 33.333 0.00 0.00 42.17 4.26
3129 6171 7.695480 TTAATTACTTGCCACATAAGCAGAA 57.305 32.000 0.00 0.00 42.17 3.02
3130 6172 6.780457 AATTACTTGCCACATAAGCAGAAT 57.220 33.333 0.00 0.00 42.17 2.40
3131 6173 6.780457 ATTACTTGCCACATAAGCAGAATT 57.220 33.333 0.00 0.00 42.17 2.17
3132 6174 6.588719 TTACTTGCCACATAAGCAGAATTT 57.411 33.333 0.00 0.00 42.17 1.82
3133 6175 5.473066 ACTTGCCACATAAGCAGAATTTT 57.527 34.783 0.00 0.00 42.17 1.82
3134 6176 5.473039 ACTTGCCACATAAGCAGAATTTTC 58.527 37.500 0.00 0.00 42.17 2.29
3135 6177 5.244626 ACTTGCCACATAAGCAGAATTTTCT 59.755 36.000 0.00 0.00 42.17 2.52
3136 6178 5.314923 TGCCACATAAGCAGAATTTTCTC 57.685 39.130 0.00 0.00 34.74 2.87
3137 6179 4.142622 TGCCACATAAGCAGAATTTTCTCG 60.143 41.667 0.00 0.00 34.74 4.04
3138 6180 4.142600 GCCACATAAGCAGAATTTTCTCGT 60.143 41.667 0.00 0.00 34.74 4.18
3139 6181 5.064707 GCCACATAAGCAGAATTTTCTCGTA 59.935 40.000 0.00 0.00 34.74 3.43
3140 6182 6.709643 CCACATAAGCAGAATTTTCTCGTAG 58.290 40.000 0.00 0.00 34.74 3.51
3141 6183 6.313905 CCACATAAGCAGAATTTTCTCGTAGT 59.686 38.462 0.00 0.00 34.74 2.73
3142 6184 7.176075 CACATAAGCAGAATTTTCTCGTAGTG 58.824 38.462 0.00 0.00 34.74 2.74
3143 6185 6.874134 ACATAAGCAGAATTTTCTCGTAGTGT 59.126 34.615 0.00 0.00 34.74 3.55
3144 6186 5.597813 AAGCAGAATTTTCTCGTAGTGTG 57.402 39.130 0.00 0.00 34.74 3.82
3145 6187 3.433615 AGCAGAATTTTCTCGTAGTGTGC 59.566 43.478 0.00 0.00 34.74 4.57
3146 6188 3.433615 GCAGAATTTTCTCGTAGTGTGCT 59.566 43.478 0.00 0.00 34.74 4.40
3147 6189 4.625742 GCAGAATTTTCTCGTAGTGTGCTA 59.374 41.667 0.00 0.00 34.74 3.49
3148 6190 5.292101 GCAGAATTTTCTCGTAGTGTGCTAT 59.708 40.000 0.00 0.00 34.74 2.97
3149 6191 6.700020 CAGAATTTTCTCGTAGTGTGCTATG 58.300 40.000 0.00 0.00 34.74 2.23
3150 6192 6.311445 CAGAATTTTCTCGTAGTGTGCTATGT 59.689 38.462 0.00 0.00 34.74 2.29
3151 6193 6.874134 AGAATTTTCTCGTAGTGTGCTATGTT 59.126 34.615 0.00 0.00 36.04 2.71
3152 6194 8.033038 AGAATTTTCTCGTAGTGTGCTATGTTA 58.967 33.333 0.00 0.00 36.04 2.41
3153 6195 6.939551 TTTTCTCGTAGTGTGCTATGTTAC 57.060 37.500 0.00 0.00 36.04 2.50
3154 6196 5.892160 TTCTCGTAGTGTGCTATGTTACT 57.108 39.130 0.00 0.00 36.04 2.24
3155 6197 6.990341 TTCTCGTAGTGTGCTATGTTACTA 57.010 37.500 0.00 0.00 36.04 1.82
3156 6198 6.600246 TCTCGTAGTGTGCTATGTTACTAG 57.400 41.667 0.00 0.00 36.04 2.57
3157 6199 5.007430 TCTCGTAGTGTGCTATGTTACTAGC 59.993 44.000 6.81 6.81 43.61 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 7.727331 TGCTTGGAATAAAATTTGGACAAAG 57.273 32.000 3.71 0.00 33.32 2.77
249 250 4.660789 TTCTATAACGGGGCAAGAGTAC 57.339 45.455 0.00 0.00 0.00 2.73
252 253 4.402056 TCTTTCTATAACGGGGCAAGAG 57.598 45.455 0.00 0.00 0.00 2.85
253 254 4.829872 TTCTTTCTATAACGGGGCAAGA 57.170 40.909 0.00 0.00 0.00 3.02
254 255 5.163652 CCTTTTCTTTCTATAACGGGGCAAG 60.164 44.000 0.00 0.00 0.00 4.01
255 256 4.703093 CCTTTTCTTTCTATAACGGGGCAA 59.297 41.667 0.00 0.00 0.00 4.52
258 259 5.985911 TCTCCTTTTCTTTCTATAACGGGG 58.014 41.667 0.00 0.00 0.00 5.73
259 260 6.539103 CCTTCTCCTTTTCTTTCTATAACGGG 59.461 42.308 0.00 0.00 0.00 5.28
260 261 7.328737 TCCTTCTCCTTTTCTTTCTATAACGG 58.671 38.462 0.00 0.00 0.00 4.44
261 262 8.657729 GTTCCTTCTCCTTTTCTTTCTATAACG 58.342 37.037 0.00 0.00 0.00 3.18
262 263 8.657729 CGTTCCTTCTCCTTTTCTTTCTATAAC 58.342 37.037 0.00 0.00 0.00 1.89
263 264 7.822822 CCGTTCCTTCTCCTTTTCTTTCTATAA 59.177 37.037 0.00 0.00 0.00 0.98
264 265 7.328737 CCGTTCCTTCTCCTTTTCTTTCTATA 58.671 38.462 0.00 0.00 0.00 1.31
292 3219 6.435428 ACGCAAAGTGAGTCGATTTTAATTT 58.565 32.000 0.00 0.00 0.00 1.82
295 3222 5.201910 CAACGCAAAGTGAGTCGATTTTAA 58.798 37.500 0.00 0.00 27.87 1.52
297 3224 3.617669 CAACGCAAAGTGAGTCGATTTT 58.382 40.909 0.00 0.00 27.87 1.82
298 3225 2.602217 GCAACGCAAAGTGAGTCGATTT 60.602 45.455 0.00 0.00 27.87 2.17
299 3226 1.069906 GCAACGCAAAGTGAGTCGATT 60.070 47.619 0.00 0.00 27.87 3.34
300 3227 0.512952 GCAACGCAAAGTGAGTCGAT 59.487 50.000 0.00 0.00 27.87 3.59
301 3228 1.817217 CGCAACGCAAAGTGAGTCGA 61.817 55.000 0.00 0.00 27.87 4.20
302 3229 1.437089 CGCAACGCAAAGTGAGTCG 60.437 57.895 0.00 0.00 27.87 4.18
313 3240 1.142778 TGCTTTTGAAACCGCAACGC 61.143 50.000 0.00 0.00 0.00 4.84
359 3286 6.755542 AACCCTTATATCTTTGGGAGAGAG 57.244 41.667 3.70 0.00 42.11 3.20
362 3289 7.147213 TGCATTAACCCTTATATCTTTGGGAGA 60.147 37.037 3.70 0.00 42.11 3.71
375 3302 8.745590 GGAGAAAATAACTTGCATTAACCCTTA 58.254 33.333 0.00 0.00 0.00 2.69
453 3380 2.912025 CGGCTGCCACCTTGGTTT 60.912 61.111 20.29 0.00 40.46 3.27
614 3541 1.522668 TGATTCGAGTTGTGGCCTTG 58.477 50.000 3.32 0.00 0.00 3.61
615 3542 2.270352 TTGATTCGAGTTGTGGCCTT 57.730 45.000 3.32 0.00 0.00 4.35
616 3543 2.270352 TTTGATTCGAGTTGTGGCCT 57.730 45.000 3.32 0.00 0.00 5.19
617 3544 2.476185 CGATTTGATTCGAGTTGTGGCC 60.476 50.000 0.00 0.00 41.62 5.36
618 3545 2.476185 CCGATTTGATTCGAGTTGTGGC 60.476 50.000 0.00 0.00 41.62 5.01
619 3546 2.742053 ACCGATTTGATTCGAGTTGTGG 59.258 45.455 0.00 0.00 41.62 4.17
620 3547 3.431912 TGACCGATTTGATTCGAGTTGTG 59.568 43.478 0.00 0.00 41.62 3.33
621 3548 3.659786 TGACCGATTTGATTCGAGTTGT 58.340 40.909 0.00 0.00 41.62 3.32
769 3699 8.866093 CCGATCCCTAATATAAAACCCAAAATT 58.134 33.333 0.00 0.00 0.00 1.82
770 3700 7.453439 CCCGATCCCTAATATAAAACCCAAAAT 59.547 37.037 0.00 0.00 0.00 1.82
827 3766 0.471211 TTAGGGCCCGGTCTGGATAG 60.471 60.000 18.44 0.00 42.00 2.08
882 3821 8.470040 TTCCTTTATTTATCTGTGTGTCGTAC 57.530 34.615 0.00 0.00 0.00 3.67
1318 4280 0.378962 CGGTTCAAAAGGTTGACGCA 59.621 50.000 0.00 0.00 43.52 5.24
1324 4286 1.404035 GAGCACACGGTTCAAAAGGTT 59.596 47.619 0.00 0.00 0.00 3.50
1327 4289 0.041312 CCGAGCACACGGTTCAAAAG 60.041 55.000 8.46 0.00 46.70 2.27
1328 4290 2.018544 CCGAGCACACGGTTCAAAA 58.981 52.632 8.46 0.00 46.70 2.44
1381 4367 4.523813 CACACAATGACTTGTTTCCGTAC 58.476 43.478 0.00 0.00 43.05 3.67
1536 4522 6.042143 GCACATGGAAACCAATATAACCTTG 58.958 40.000 0.00 0.00 36.95 3.61
1542 4528 6.127479 GGAAACAGCACATGGAAACCAATATA 60.127 38.462 0.00 0.00 36.95 0.86
1565 4551 1.065491 CCAGGGTTCGTTCATCATGGA 60.065 52.381 0.00 0.00 0.00 3.41
1567 4553 0.734889 GCCAGGGTTCGTTCATCATG 59.265 55.000 0.00 0.00 0.00 3.07
1584 4570 1.066430 TCCGAGGAGTAAACACATGCC 60.066 52.381 0.00 0.00 0.00 4.40
1652 4638 0.036010 AGACGAACCAGCATCCCAAG 60.036 55.000 0.00 0.00 0.00 3.61
1667 4653 2.671177 CGAACAAGCAGCCCAGACG 61.671 63.158 0.00 0.00 0.00 4.18
1675 4661 3.542712 AAGTGCATTACGAACAAGCAG 57.457 42.857 0.00 0.00 35.66 4.24
1684 4670 4.463209 CACAACCAGTAAAGTGCATTACG 58.537 43.478 4.90 1.53 40.05 3.18
1720 4706 3.745975 TCCAAGTCAAACTCAAGTATGCG 59.254 43.478 0.00 0.00 0.00 4.73
1737 4723 3.279853 GCAAGACTCTGCTTTTCCAAG 57.720 47.619 3.32 0.00 39.34 3.61
1776 4762 5.888161 ACAAGACCAGGATTCCATTGTAATC 59.112 40.000 5.29 0.00 33.44 1.75
1825 4811 5.393027 CGGACAATTTAGCAAAGCCAATAGT 60.393 40.000 0.00 0.00 0.00 2.12
1841 4827 1.523758 GAAGTGTGAGCCGGACAATT 58.476 50.000 5.05 6.37 34.50 2.32
1849 4835 2.712057 CACATTTGGAAGTGTGAGCC 57.288 50.000 8.86 0.00 46.58 4.70
1852 4838 2.422661 TCTGCCACATTTGGAAGTGTGA 60.423 45.455 14.62 0.00 46.88 3.58
1881 4867 5.360429 CCATGTGGGAACATCATGAACATTA 59.640 40.000 0.00 0.00 45.01 1.90
1930 4916 3.559171 GGAGGTGGCTCAAGAATGTTACA 60.559 47.826 0.00 0.00 0.00 2.41
1931 4917 3.010420 GGAGGTGGCTCAAGAATGTTAC 58.990 50.000 0.00 0.00 0.00 2.50
1946 4932 6.014755 TGAGCTTCTATCAATATGAGGAGGTG 60.015 42.308 0.00 0.00 0.00 4.00
1968 4954 8.642432 TCAGAGTATCCCAATATACTTGTTGAG 58.358 37.037 0.00 0.00 41.65 3.02
2018 5007 6.382859 AACCAAGTATTTATTGGGTTCCATCC 59.617 38.462 9.37 0.00 45.62 3.51
2019 5008 7.418337 AACCAAGTATTTATTGGGTTCCATC 57.582 36.000 9.37 0.00 45.62 3.51
2031 5020 9.715121 ATCGACTTAAGTTGAACCAAGTATTTA 57.285 29.630 25.77 2.61 41.40 1.40
2076 5068 8.349983 GCATGGTAATTCGAGGTATAATTTGTT 58.650 33.333 0.00 0.00 0.00 2.83
2081 5073 7.936847 TGAAAGCATGGTAATTCGAGGTATAAT 59.063 33.333 0.00 0.00 0.00 1.28
2082 5074 7.225931 GTGAAAGCATGGTAATTCGAGGTATAA 59.774 37.037 0.00 0.00 0.00 0.98
2083 5075 6.704493 GTGAAAGCATGGTAATTCGAGGTATA 59.296 38.462 0.00 0.00 0.00 1.47
2086 5078 3.689649 GTGAAAGCATGGTAATTCGAGGT 59.310 43.478 0.00 0.00 0.00 3.85
2087 5079 3.242413 CGTGAAAGCATGGTAATTCGAGG 60.242 47.826 0.00 0.00 0.00 4.63
2088 5080 3.616821 TCGTGAAAGCATGGTAATTCGAG 59.383 43.478 0.00 0.00 0.00 4.04
2089 5081 3.591023 TCGTGAAAGCATGGTAATTCGA 58.409 40.909 0.00 4.56 0.00 3.71
2090 5082 3.370978 ACTCGTGAAAGCATGGTAATTCG 59.629 43.478 0.00 2.13 0.00 3.34
2094 5089 4.385825 AGAAACTCGTGAAAGCATGGTAA 58.614 39.130 0.00 0.00 0.00 2.85
2117 5112 6.575244 TGGATGAGAAAATACCTGGTGTAT 57.425 37.500 10.23 0.00 42.06 2.29
2145 5140 8.325046 GGAATAGGCTCCTCTCACAATATAAAT 58.675 37.037 0.00 0.00 32.21 1.40
2146 5141 7.292356 TGGAATAGGCTCCTCTCACAATATAAA 59.708 37.037 0.00 0.00 36.35 1.40
2156 5151 6.120507 ACATAAATGGAATAGGCTCCTCTC 57.879 41.667 0.00 0.00 36.35 3.20
2157 5152 6.466470 GGAACATAAATGGAATAGGCTCCTCT 60.466 42.308 0.00 0.00 36.35 3.69
2161 5156 5.063880 ACGGAACATAAATGGAATAGGCTC 58.936 41.667 0.00 0.00 0.00 4.70
2163 5158 5.761234 TGTACGGAACATAAATGGAATAGGC 59.239 40.000 0.00 0.00 31.43 3.93
2189 5184 8.908786 ACCACAATATAGATGATCGAACAATT 57.091 30.769 0.00 0.00 0.00 2.32
2216 5211 6.348540 GGTTTAGGTTGTCAATGACTAGCAAG 60.349 42.308 23.79 0.00 38.00 4.01
2217 5212 5.472137 GGTTTAGGTTGTCAATGACTAGCAA 59.528 40.000 23.79 14.97 38.00 3.91
2221 5216 8.598916 TGATTAGGTTTAGGTTGTCAATGACTA 58.401 33.333 14.97 3.98 33.15 2.59
2227 5222 7.883391 TTGTTGATTAGGTTTAGGTTGTCAA 57.117 32.000 0.00 0.00 0.00 3.18
2229 5224 7.328493 GCAATTGTTGATTAGGTTTAGGTTGTC 59.672 37.037 7.40 0.00 0.00 3.18
2238 5233 3.769300 GAGGGGCAATTGTTGATTAGGTT 59.231 43.478 7.40 0.00 0.00 3.50
2253 5248 0.324943 GTCTTTGTAGCAGAGGGGCA 59.675 55.000 0.00 0.00 35.83 5.36
2254 5249 0.324943 TGTCTTTGTAGCAGAGGGGC 59.675 55.000 0.00 0.00 0.00 5.80
2255 5250 2.039084 AGTTGTCTTTGTAGCAGAGGGG 59.961 50.000 0.00 0.00 0.00 4.79
2256 5251 3.409026 AGTTGTCTTTGTAGCAGAGGG 57.591 47.619 0.00 0.00 0.00 4.30
2257 5252 5.992217 ACTTAAGTTGTCTTTGTAGCAGAGG 59.008 40.000 1.12 0.00 35.36 3.69
2258 5253 7.484035 AACTTAAGTTGTCTTTGTAGCAGAG 57.516 36.000 19.94 0.00 36.80 3.35
2328 5323 7.252708 TCATTTGACATTTGATTTGGATCTCG 58.747 34.615 0.00 0.00 33.28 4.04
2330 5325 9.378551 CATTCATTTGACATTTGATTTGGATCT 57.621 29.630 0.00 0.00 33.28 2.75
2379 5374 1.466167 AGCTAGTCGTTGCATGCAAAG 59.534 47.619 33.42 32.83 37.70 2.77
2450 5445 2.886523 GGCATATTTGGCTAGTGATGCA 59.113 45.455 12.10 0.00 44.68 3.96
2506 5504 8.204160 TGGATAGAACATACAGTGGTTTCTATG 58.796 37.037 16.36 8.54 36.77 2.23
2518 5516 7.517614 TTTTTGCTTGTGGATAGAACATACA 57.482 32.000 0.00 0.00 0.00 2.29
2524 5522 7.609960 TGCATTATTTTTGCTTGTGGATAGAA 58.390 30.769 0.00 0.00 40.77 2.10
2526 5524 8.428186 AATGCATTATTTTTGCTTGTGGATAG 57.572 30.769 11.02 0.00 40.77 2.08
2527 5525 8.789825 AAATGCATTATTTTTGCTTGTGGATA 57.210 26.923 13.39 0.00 40.77 2.59
2588 5588 6.489603 TGCTGATAAAAGATTAAGGTTGGGA 58.510 36.000 0.00 0.00 0.00 4.37
2629 5629 7.552050 AAATGTGGGGTCATAAGATTCAAAA 57.448 32.000 0.00 0.00 0.00 2.44
2638 5639 3.775866 TCGGAGTAAATGTGGGGTCATAA 59.224 43.478 0.00 0.00 0.00 1.90
2749 5776 1.913262 TGGTCGGGTGCAGAGTGAT 60.913 57.895 0.00 0.00 0.00 3.06
2828 5868 2.719739 AGAGCAATGATGGAGTTGTGG 58.280 47.619 0.00 0.00 0.00 4.17
2829 5869 4.093998 GTGTAGAGCAATGATGGAGTTGTG 59.906 45.833 0.00 0.00 0.00 3.33
2844 5884 0.905357 ATGGTGTCCAGGTGTAGAGC 59.095 55.000 0.00 0.00 36.75 4.09
2898 5938 1.741770 GTAGCACACCCCTTCAGCG 60.742 63.158 0.00 0.00 0.00 5.18
2921 5963 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
2922 5964 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
2923 5965 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
2924 5966 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
2925 5967 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
2926 5968 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
2927 5969 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
2928 5970 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
2929 5971 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
2930 5972 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
2931 5973 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
2932 5974 7.059156 TGATACTAGTCTAAGTTACTCCCCAC 58.941 42.308 0.00 0.00 0.00 4.61
2933 5975 7.217028 TGATACTAGTCTAAGTTACTCCCCA 57.783 40.000 0.00 0.00 0.00 4.96
2934 5976 7.309316 GCATGATACTAGTCTAAGTTACTCCCC 60.309 44.444 0.00 0.00 0.00 4.81
2935 5977 7.230913 TGCATGATACTAGTCTAAGTTACTCCC 59.769 40.741 0.00 0.00 0.00 4.30
2936 5978 8.167605 TGCATGATACTAGTCTAAGTTACTCC 57.832 38.462 0.00 0.00 0.00 3.85
2942 5984 9.301897 TGTCATATGCATGATACTAGTCTAAGT 57.698 33.333 10.16 0.00 43.03 2.24
2943 5985 9.566530 GTGTCATATGCATGATACTAGTCTAAG 57.433 37.037 10.16 0.00 45.15 2.18
2953 5995 9.301897 ACTTAGACTAGTGTCATATGCATGATA 57.698 33.333 10.16 0.00 43.03 2.15
2954 5996 8.187913 ACTTAGACTAGTGTCATATGCATGAT 57.812 34.615 10.16 0.00 43.03 2.45
2955 5997 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
2956 5998 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
2957 5999 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
2958 6000 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
2959 6001 9.881529 GTAGTAACTTAGACTAGTGTCATATGC 57.118 37.037 0.00 0.00 45.20 3.14
2963 6005 9.176460 GAAGGTAGTAACTTAGACTAGTGTCAT 57.824 37.037 0.00 0.00 45.20 3.06
2964 6006 8.159447 TGAAGGTAGTAACTTAGACTAGTGTCA 58.841 37.037 0.00 0.00 45.20 3.58
2965 6007 8.558973 TGAAGGTAGTAACTTAGACTAGTGTC 57.441 38.462 0.00 0.00 43.22 3.67
2971 6013 8.978472 TGCAATATGAAGGTAGTAACTTAGACT 58.022 33.333 0.00 0.00 0.00 3.24
2972 6014 9.595823 TTGCAATATGAAGGTAGTAACTTAGAC 57.404 33.333 0.00 0.00 0.00 2.59
2975 6017 9.953565 ACTTTGCAATATGAAGGTAGTAACTTA 57.046 29.630 0.00 0.00 0.00 2.24
2976 6018 8.863872 ACTTTGCAATATGAAGGTAGTAACTT 57.136 30.769 0.00 0.00 0.00 2.66
2977 6019 9.953565 TTACTTTGCAATATGAAGGTAGTAACT 57.046 29.630 0.00 0.00 0.00 2.24
2978 6020 9.983804 GTTACTTTGCAATATGAAGGTAGTAAC 57.016 33.333 20.51 20.51 38.55 2.50
2979 6021 9.727859 TGTTACTTTGCAATATGAAGGTAGTAA 57.272 29.630 0.00 5.26 0.00 2.24
2980 6022 9.899661 ATGTTACTTTGCAATATGAAGGTAGTA 57.100 29.630 0.00 0.00 0.00 1.82
2981 6023 8.807948 ATGTTACTTTGCAATATGAAGGTAGT 57.192 30.769 0.00 0.00 0.00 2.73
2984 6026 9.019656 TGTTATGTTACTTTGCAATATGAAGGT 57.980 29.630 0.00 0.00 0.00 3.50
2985 6027 9.507280 CTGTTATGTTACTTTGCAATATGAAGG 57.493 33.333 0.00 0.00 0.00 3.46
2993 6035 9.713713 TGATACTACTGTTATGTTACTTTGCAA 57.286 29.630 0.00 0.00 0.00 4.08
2994 6036 9.884636 ATGATACTACTGTTATGTTACTTTGCA 57.115 29.630 0.00 0.00 0.00 4.08
3002 6044 9.094578 AGCCATCTATGATACTACTGTTATGTT 57.905 33.333 0.00 0.00 0.00 2.71
3003 6045 8.657387 AGCCATCTATGATACTACTGTTATGT 57.343 34.615 0.00 0.00 0.00 2.29
3004 6046 9.579768 GAAGCCATCTATGATACTACTGTTATG 57.420 37.037 0.00 0.00 0.00 1.90
3005 6047 9.314133 TGAAGCCATCTATGATACTACTGTTAT 57.686 33.333 0.00 0.00 0.00 1.89
3006 6048 8.706322 TGAAGCCATCTATGATACTACTGTTA 57.294 34.615 0.00 0.00 0.00 2.41
3007 6049 7.603180 TGAAGCCATCTATGATACTACTGTT 57.397 36.000 0.00 0.00 0.00 3.16
3008 6050 7.789202 ATGAAGCCATCTATGATACTACTGT 57.211 36.000 0.00 0.00 0.00 3.55
3016 6058 9.393512 GAGCTAATAAATGAAGCCATCTATGAT 57.606 33.333 0.00 0.00 36.92 2.45
3017 6059 8.377799 TGAGCTAATAAATGAAGCCATCTATGA 58.622 33.333 0.00 0.00 36.92 2.15
3018 6060 8.557592 TGAGCTAATAAATGAAGCCATCTATG 57.442 34.615 0.00 0.00 36.92 2.23
3019 6061 9.578576 TTTGAGCTAATAAATGAAGCCATCTAT 57.421 29.630 0.00 0.00 36.92 1.98
3020 6062 8.978874 TTTGAGCTAATAAATGAAGCCATCTA 57.021 30.769 0.00 0.00 36.92 1.98
3021 6063 7.776969 TCTTTGAGCTAATAAATGAAGCCATCT 59.223 33.333 0.00 0.00 36.92 2.90
3022 6064 7.859875 GTCTTTGAGCTAATAAATGAAGCCATC 59.140 37.037 0.00 0.00 36.92 3.51
3023 6065 7.559170 AGTCTTTGAGCTAATAAATGAAGCCAT 59.441 33.333 0.00 0.00 36.92 4.40
3024 6066 6.886459 AGTCTTTGAGCTAATAAATGAAGCCA 59.114 34.615 0.00 0.00 36.92 4.75
3025 6067 7.066284 TGAGTCTTTGAGCTAATAAATGAAGCC 59.934 37.037 0.00 0.00 36.92 4.35
3026 6068 7.978982 TGAGTCTTTGAGCTAATAAATGAAGC 58.021 34.615 0.00 0.00 36.48 3.86
3028 6070 9.896645 AGATGAGTCTTTGAGCTAATAAATGAA 57.103 29.630 0.00 0.00 0.00 2.57
3029 6071 9.896645 AAGATGAGTCTTTGAGCTAATAAATGA 57.103 29.630 0.00 0.00 41.92 2.57
3030 6072 9.932699 CAAGATGAGTCTTTGAGCTAATAAATG 57.067 33.333 0.00 0.00 41.92 2.32
3031 6073 9.678260 ACAAGATGAGTCTTTGAGCTAATAAAT 57.322 29.630 8.81 0.00 41.92 1.40
3032 6074 9.155975 GACAAGATGAGTCTTTGAGCTAATAAA 57.844 33.333 8.81 0.00 41.92 1.40
3033 6075 8.535335 AGACAAGATGAGTCTTTGAGCTAATAA 58.465 33.333 8.81 0.00 43.47 1.40
3034 6076 8.072321 AGACAAGATGAGTCTTTGAGCTAATA 57.928 34.615 8.81 0.00 43.47 0.98
3035 6077 6.945218 AGACAAGATGAGTCTTTGAGCTAAT 58.055 36.000 8.81 0.00 43.47 1.73
3036 6078 6.352016 AGACAAGATGAGTCTTTGAGCTAA 57.648 37.500 8.81 0.00 43.47 3.09
3037 6079 5.991933 AGACAAGATGAGTCTTTGAGCTA 57.008 39.130 8.81 0.00 43.47 3.32
3038 6080 4.888326 AGACAAGATGAGTCTTTGAGCT 57.112 40.909 8.81 0.00 43.47 4.09
3046 6088 3.124297 CGCTTTCCAAGACAAGATGAGTC 59.876 47.826 0.00 0.00 36.26 3.36
3047 6089 3.070018 CGCTTTCCAAGACAAGATGAGT 58.930 45.455 0.00 0.00 0.00 3.41
3048 6090 2.159599 GCGCTTTCCAAGACAAGATGAG 60.160 50.000 0.00 0.00 0.00 2.90
3049 6091 1.806542 GCGCTTTCCAAGACAAGATGA 59.193 47.619 0.00 0.00 0.00 2.92
3050 6092 1.808945 AGCGCTTTCCAAGACAAGATG 59.191 47.619 2.64 0.00 0.00 2.90
3051 6093 2.191128 AGCGCTTTCCAAGACAAGAT 57.809 45.000 2.64 0.00 0.00 2.40
3052 6094 2.831685 TAGCGCTTTCCAAGACAAGA 57.168 45.000 18.68 0.00 0.00 3.02
3053 6095 2.744202 ACATAGCGCTTTCCAAGACAAG 59.256 45.455 18.68 0.00 0.00 3.16
3054 6096 2.778299 ACATAGCGCTTTCCAAGACAA 58.222 42.857 18.68 0.00 0.00 3.18
3055 6097 2.472695 ACATAGCGCTTTCCAAGACA 57.527 45.000 18.68 0.00 0.00 3.41
3056 6098 3.682858 TGTAACATAGCGCTTTCCAAGAC 59.317 43.478 18.68 6.42 0.00 3.01
3057 6099 3.932710 CTGTAACATAGCGCTTTCCAAGA 59.067 43.478 18.68 0.00 0.00 3.02
3058 6100 3.684788 ACTGTAACATAGCGCTTTCCAAG 59.315 43.478 18.68 7.94 0.00 3.61
3059 6101 3.670625 ACTGTAACATAGCGCTTTCCAA 58.329 40.909 18.68 0.00 0.00 3.53
3060 6102 3.328382 ACTGTAACATAGCGCTTTCCA 57.672 42.857 18.68 0.00 0.00 3.53
3061 6103 4.628333 TGTTACTGTAACATAGCGCTTTCC 59.372 41.667 25.14 0.00 43.23 3.13
3062 6104 5.773239 TGTTACTGTAACATAGCGCTTTC 57.227 39.130 25.14 0.00 43.23 2.62
3091 6133 7.201705 GGCAAGTAATTAATGAGAGGTGGTAAC 60.202 40.741 4.19 0.00 0.00 2.50
3092 6134 6.826741 GGCAAGTAATTAATGAGAGGTGGTAA 59.173 38.462 4.19 0.00 0.00 2.85
3093 6135 6.069905 TGGCAAGTAATTAATGAGAGGTGGTA 60.070 38.462 4.19 0.00 0.00 3.25
3094 6136 5.193679 GGCAAGTAATTAATGAGAGGTGGT 58.806 41.667 4.19 0.00 0.00 4.16
3095 6137 5.066505 GTGGCAAGTAATTAATGAGAGGTGG 59.933 44.000 0.00 0.00 0.00 4.61
3096 6138 5.647658 TGTGGCAAGTAATTAATGAGAGGTG 59.352 40.000 0.00 0.00 0.00 4.00
3097 6139 5.815581 TGTGGCAAGTAATTAATGAGAGGT 58.184 37.500 0.00 0.00 0.00 3.85
3098 6140 6.949352 ATGTGGCAAGTAATTAATGAGAGG 57.051 37.500 0.00 0.00 0.00 3.69
3099 6141 8.072567 GCTTATGTGGCAAGTAATTAATGAGAG 58.927 37.037 0.00 0.00 0.00 3.20
3100 6142 7.555914 TGCTTATGTGGCAAGTAATTAATGAGA 59.444 33.333 0.00 0.00 36.71 3.27
3101 6143 7.706159 TGCTTATGTGGCAAGTAATTAATGAG 58.294 34.615 0.00 0.00 36.71 2.90
3102 6144 7.555914 TCTGCTTATGTGGCAAGTAATTAATGA 59.444 33.333 0.00 0.00 39.30 2.57
3103 6145 7.706159 TCTGCTTATGTGGCAAGTAATTAATG 58.294 34.615 0.00 0.00 39.30 1.90
3104 6146 7.880160 TCTGCTTATGTGGCAAGTAATTAAT 57.120 32.000 0.00 0.00 39.30 1.40
3105 6147 7.695480 TTCTGCTTATGTGGCAAGTAATTAA 57.305 32.000 0.00 0.00 39.30 1.40
3106 6148 7.880160 ATTCTGCTTATGTGGCAAGTAATTA 57.120 32.000 0.00 0.00 39.30 1.40
3107 6149 6.780457 ATTCTGCTTATGTGGCAAGTAATT 57.220 33.333 0.00 0.00 39.30 1.40
3108 6150 6.780457 AATTCTGCTTATGTGGCAAGTAAT 57.220 33.333 0.00 0.00 39.30 1.89
3109 6151 6.588719 AAATTCTGCTTATGTGGCAAGTAA 57.411 33.333 0.00 0.00 39.30 2.24
3110 6152 6.434028 AGAAAATTCTGCTTATGTGGCAAGTA 59.566 34.615 0.00 0.00 39.30 2.24
3111 6153 5.244626 AGAAAATTCTGCTTATGTGGCAAGT 59.755 36.000 0.00 0.00 39.30 3.16
3112 6154 5.717119 AGAAAATTCTGCTTATGTGGCAAG 58.283 37.500 0.00 0.00 39.30 4.01
3113 6155 5.619757 CGAGAAAATTCTGCTTATGTGGCAA 60.620 40.000 0.00 0.00 39.30 4.52
3114 6156 4.142622 CGAGAAAATTCTGCTTATGTGGCA 60.143 41.667 0.00 0.00 37.73 4.92
3115 6157 4.142600 ACGAGAAAATTCTGCTTATGTGGC 60.143 41.667 0.00 0.00 37.73 5.01
3116 6158 5.551760 ACGAGAAAATTCTGCTTATGTGG 57.448 39.130 0.00 0.00 37.73 4.17
3117 6159 7.148573 ACACTACGAGAAAATTCTGCTTATGTG 60.149 37.037 0.00 5.15 37.73 3.21
3118 6160 6.874134 ACACTACGAGAAAATTCTGCTTATGT 59.126 34.615 0.00 0.00 37.73 2.29
3119 6161 7.176075 CACACTACGAGAAAATTCTGCTTATG 58.824 38.462 0.00 0.00 37.73 1.90
3120 6162 6.183360 GCACACTACGAGAAAATTCTGCTTAT 60.183 38.462 0.00 0.00 37.73 1.73
3121 6163 5.120208 GCACACTACGAGAAAATTCTGCTTA 59.880 40.000 0.00 0.00 37.73 3.09
3122 6164 4.083802 GCACACTACGAGAAAATTCTGCTT 60.084 41.667 0.00 0.00 37.73 3.91
3123 6165 3.433615 GCACACTACGAGAAAATTCTGCT 59.566 43.478 0.00 0.00 37.73 4.24
3124 6166 3.433615 AGCACACTACGAGAAAATTCTGC 59.566 43.478 0.00 0.00 37.73 4.26
3125 6167 6.311445 ACATAGCACACTACGAGAAAATTCTG 59.689 38.462 0.00 0.00 37.73 3.02
3126 6168 6.398918 ACATAGCACACTACGAGAAAATTCT 58.601 36.000 0.00 0.00 41.00 2.40
3127 6169 6.648725 ACATAGCACACTACGAGAAAATTC 57.351 37.500 0.00 0.00 0.00 2.17
3128 6170 7.817962 AGTAACATAGCACACTACGAGAAAATT 59.182 33.333 0.00 0.00 0.00 1.82
3129 6171 7.321153 AGTAACATAGCACACTACGAGAAAAT 58.679 34.615 0.00 0.00 0.00 1.82
3130 6172 6.684686 AGTAACATAGCACACTACGAGAAAA 58.315 36.000 0.00 0.00 0.00 2.29
3131 6173 6.263516 AGTAACATAGCACACTACGAGAAA 57.736 37.500 0.00 0.00 0.00 2.52
3132 6174 5.892160 AGTAACATAGCACACTACGAGAA 57.108 39.130 0.00 0.00 0.00 2.87
3133 6175 5.007430 GCTAGTAACATAGCACACTACGAGA 59.993 44.000 0.00 0.00 46.12 4.04
3134 6176 5.206299 GCTAGTAACATAGCACACTACGAG 58.794 45.833 0.00 0.00 46.12 4.18
3135 6177 5.165911 GCTAGTAACATAGCACACTACGA 57.834 43.478 0.00 0.00 46.12 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.