>input_sequence_59018
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--------------------------------------ATGAGCGAGCCCGAGCGCGCCCATGTGATCCGCGGCCGCCGC
TGCAGCTCCGTGCTGGATGATGACGATCTCCTCTGGGAGATCCTTCTCCGCCTTTCGCCGCAGCCGTCCTCCCTCCCGCG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCACAACGGATCCAGTGTTCCTCCGCCGGTTCTGCGAGCATCACCGGG
AGCCGCCCCTCCTTGGCGTCTTCGGGTGCGACAAAGAAAACATCGTGTTCGCTCCTTCACTGGGCCCTCCTGACCGTATC
CCTTCCGTGCACTTTGACCTTGGACT---GCGTAGCGGCTGCGTCAACCTTT------------------------TGAA
CCGTGTGCTCGGGTGCCGCCACGGCCGCGTCCTCGTTGGGGACTATGTACGGAAACAAGTCATTGTGTGCGACCCCATCA
CAGGCGAGCAGTGCCGTGTGGCCGTCCCTTTGGAGTTCCGGAGGGTCCGCTTCTGCGGGGCGGTGCTCTGCACCGCCGGC
GATCAAGGCCACGTGCACGGCGCATGCCATTCAAGCCCCTTCAAGGTTATATTGGTTTCCATGTGCTGTTTCCATGATGA
ACGAACCCTGGCATGTGTTTACTCCTCGGAGACTGGTGCATGGGGCAATCTCATCTCGACGACATTTCCACGTTTCACTT
GGGATGCTGGTTCGTCTGGGCTGCTTGTTCGTAATGCACTTTACTGGTTGTGCACAAATGAAGATCGCATACTTGAGTTT
GACTTGGAAAAGCAGAGTCTTGCTATCATCACCGTTCCACCGATTACAATGGAATCCTGGTCTTGTCACATCATCCAGGC
TGAGGATGACACTATTGGCTTTGCTAAATTGTCCGGCTCACACTTCCAAATGTGGCAGAGGAACTCTAATGTTCATGATG
TTCCCACATGGGTGTTGTGGAAGAACATTGAAATATGTAACATTCTTGAGCCACCTCCTCATATTGATAGAAGCTCAAC-
--AAGTATATTGGGATACTCTGAGGATACTGATGAAATTTTTATATGGATGGAACCCAATAA---ATACTTGGTTCAACT
TAAGTCGATGCAATCCAAGAGACCTAAAACAAATTATACCTC---GAATTACCATGCTTTCACGAGTTTCTATACACCAG
GTATTTTCTCATCCATAGTATTTATATTGTGA------------------------------------------------
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>chr3A_1_TraesCS3A01G015700
AAAGTATTACAGAAGTCAGGCTTATAAATATTTAAAAAAAGACACAAGAGGATTGAGAAGACCTAAAATTCATGTACAAA
GAAAGATACTTTGTCCAAATTTTATTCCAAGCAAACAATTTAATAATTCAATGTCCGGAGAATATACTATCTCCAGTGCT
TCACCATTGAAGACAAAGCACTGAATTAGGCAAGACATCAAAAACTAAATTGTTGTCAATCAACAGATTACTAGCAACAA
CTCCTAAAGGTACTCTTGCCCCGTT-------------------------------------------------------
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-----------------------------------------------------------------------ATAGAAAGA
AAAGGAGAAGGAACGGGCAAATTAAAATCGACTCACTTTGCGTTGCGGTTTCAAAAGCACACATGCCCCGTTTGTTTCTT
CCTTTCTCTCTCCCAAAGATATAAGGGTTAATGCAAGTTATTTTCTCCATTTGCAGGCCTGAAGCAGAAAGTAAGTAAAT
AAATATAGATGCCTTAGGGAAACCAAGGTGGCAGCCGCCATGACATTCTTGGAGCTCAAAGCTCTGATAGGTAATAAAAG
TTCACGTAAAAACTCAAAAGTTGCTAGGTTTAGAGAGAATAGGCCATGCATGACAGATTCGTGAGCTTAACTCGAACCAT
CAAACTAAACTACGTACCCACAAGGCCACAACTCGAATCAAATCGGTCAAAGCGCAGCTACTCCTGACTCAAACCAATCC
AAAAGTCAGTTGGATCTGCCAATGGATGGATTTAAGAAAACGAGATTGTTACCGAGGGGTGTTGAGTACGCTGCGGAATC
GGGGTTTTGATC---GACAATTTTGGGTTTTATATT----AGGGATCGGGG----GAGA-GAGTCCTTCACGGGTAGGCC
TTAAACTATCCAGACCGGGCCCTAATTTCCGACTGCAACTATATATAGAGATCAGATCATGTACGACACACAGATAAATA
AAGGAAGGAAAAAAGCCAGGGATCAGCCCCCCC-----AAAGAAATCCAACCTAGCTTGCGT---------------GGC
AGTGTCTTTGATCGCCGTTCCACGTACGTCCCGCCGCCATGAGCGAGCCCGAGCGCGCCCATGTGATCCGCGGCCGCCGC
TGCAGCTCCGTGCTGGATGATGACGATCTCCTCTGGGAGATCCTTCTCCGCCTTTCGCCGCAGCCGTCCTCCCTCCCGCG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCACAACGGATCCAGTGTTCCTCCGCCGGTTCTGCGAGCATCACCGGG
AGCCGCCCCTCCTTGGCGTCTTCGGGTGCGACAAAGAAAACATCGTGTTCGCTCCTTCACTGGGCCCTCCTGACCGTATC
CCTTCCGTGCACTTTGACCTTGGACT---GCGTAGCGGCTGCGTCAACCTTT------------------------TGAA
CCGTGTGCTCGGGTGCCGCCACGGCCGCGTCCTCGTTGGGGACTATGTACGGAAACAAGTCATTGTGTGCGACCCCATCA
CAGGCGAGCAGTGCCGTGTGGCCGTCCCTTTGGAGTTCCGGAGGGTCCGCTTCTGCGGGGCGGTGCTCTGCACCGCCGGC
GATCAAGGCCACGTGCACGGCGCATGCCATTCAAGCCCCTTCAAGGTTATATTGGTTTCCATGTGCTGTTTCCATGATGA
ACGAACCCTGGCATGTGTTTACTCCTCGGAGACTGGTGCATGGGGCAATCTCATCTCGACGACATTTCCACGTTTCACTT
GGGATGCTGGTTCGTCTGGGCTGCTTGTTCGTAATGCACTTTACTGGTTGTGCACAAATGAAGATCGCATACTTGAGTTT
GACTTGGAAAAGCAGAGTCTTGCTATCATCACCGTTCCACCGATTACAATGGAATCCTGGTCTTGTCACATCATCCAGGC
TGAGGATGACACTATTGGCTTTGCTAAATTGTCCGGCTCACACTTCCAAATGTGGCAGAGGAACTCTAATGTTCATGATG
TTCCCACATGGGTGTTGTGGAAGAACATTGAAATATGTAACATTCTTGAGCCACCTCCTCATATTGATAGAAGCTCAAC-
--AAGTATATTGGGATACTCTGAGGATACTGATGAAATTTTTATATGGATGGAACCCAATAA---ATACTTGGTTCAACT
TAAGTCGATGCAATCCAAGAGACCTAAAACAAATTATACCTC---GAATTACCATGCTTTCACGAGTTTCTATACACCAG
GTATTTTCTCATCCATAGTATTTATATTGTGAGAGGAGCCTATTCCATTTATGTTCCGTACATAATTGTTCGATCATCTA
TATTGTGGTTCTTGCTAGTCATTGACAACCTAAACCTAATCAACAATTGCCCCTCTGCTACAAAGACAACTTAAGTTATG
GTCCTAGTTTCTTTATGTTATTATTAGTTGTCCTCACTCTTGCGAGATCCAAATCAAATGTCAAATGAATGAAAATTGTG
AAATCAAATTACACTTTGCATGCAACGACTAGCTCATGTGTTTGAAGCAGCTAATGGCTAGCTAGCAATTTTTACGTCGC
TGTGTGCATCACT---AGCCAAATATGCCCTCTGTGTTATTGATACTTCAAAATACCTTGATACATAGAAACCACTGTAT
GTTCTATCCACAAGCAAAAATAATGCAT--TTTTAGTACTATGGTTTTTATAATACTTTGCTGCCAATCCCAACCTTAAT
CTTTTATCAGCATGTGATCTACTATTAATTTT-GAATCTTATGACCCCACATTTACTCCGAATCATGTAAGGCGTACGAG
CGGGGAGGAG---------------GACTACTCCAAAATGATTCTCGAGAGGAACAAGTCGACACCACT-----------
GACAACAACTCTATCATCACTCTGCACCCGACCACCCGTACACCATGGACAAGATGCAACTCTTTCTTGGCGCTAA-CCG
GTTGATGGT------------CAATGACCACAACTCCATCATTGCTCTACACCTGGACACCATGGACATGTTGCAGCTTC
CCGTGGAAACACTATCCCGCTGAAGGGGTG--TGCTACCTAAGGCTGGTCATAGTGGGGAGTAACTTAGACTAGTATCAT
GCATATGACACTAGTCTAAGTTACTACCTTCATATTGCAAAGTAACATAACAGTAGTATCATAGATGGCTTCATTTATTA
GCTCAAAGACTCATCTTGTCTTGGAAAGCGCTATGTTACAGTAACATATTATGTTACCACCTCTCATTAATTACTTGCCA
CATAAGCAGAATTTTCTCGTAGTGTGCTATGTTACTAGC
>chr3D_1
AAAGTATTACAGGAGTCAGGCTTATAAATATTTAAAAAAAGACACAAGAGGATTGAGAAGACCTAAAATTCATGTACAGA
GAAAGATAGTTTGTCCAAATTTTATTCCAAGCAAACAATTTAATAATTCAATGTCTGGAGAATATACTATCTCCAGTGCT
TCACCATTGAAGACAAAGCACTGAATTAGGCAAGACATC-AAAACTAAATTGTTGTCAATCAACAGATTACTAGCAACAA
CTCCTAAAGCTAACACTGAGTATCCAAAAATGGCTCAACTTATATGATGGAAGTAGATCAGGAGAAGAGGTTTGCAACAA
ATATAGTCAAGGAAAATGATGGCAGATATAGCTCATAAATACTGGAAGCATAGAAGAAATACATACGTTAGTATCTGATA
TTGTTCCAAGCATTCACGAATTAACATGCGTGGTAGGAATGCAGTCTTCCCTTTTGCACAACGAATGTTTATCCCAACAA
AGCTTCCAGCGGCATCACCGACACGCACAAGTGACCCTCCAAGTCCATTCTAGAACAAAAGTGATGTGGCAGGGTTGACA
CATTAGAAGACCACGATAATCATATTCTAGTGCAAATTATCCATTTCAAATCTTCCATAAGGCCAAAAGGTGACAAGGAA
ATCATCATCTACCTCTAGGATTTCGCAATCAGAGAACTCGAGATGTTTAGGATCACCTTCACTTGGAGCCAGCAGATTCC
CATGCTGAAGCATCCAAGTACGTGCCATGAATTGACGCCCGGCAGCTACTACCGTAGTATCAGCAGGCAGATCTTTGTCC
TGGTGACCTAGGTATAGAGGAATTACATCTGCACGTGATAACAAGGACGTCACGATGGCAATATCGGCAAATTTGACAAA
TTTGACCTATAATCGAAATCAAATCACAGAATGAACTGTCCGTGAAACTATTTCACGCGGCTGACCCTTGGCGCCTAACT
CTCAGGCGCTGCACTAGTGCAACGCCCAGGAGCTAGGCGCTGCACTGTGTAGTGTGGCGCCTAGCTCTCAGGCGCTGCAC
GCTGACTTGGGCACATATGGGTGCGACGTTGGCCGTGTAGCGCCTATCTGGGAGGCGTTGCACAGTAGGGTGTGGCGCCG
GCGTGGCGGGCGCTACACAAAAGGGTCAGGGGAGTGAAATAGTTTCGCAACCAGTTCATTCTGTGATTTGATTTCGATTA
TAGGTCAAAATTGTCAAATTTGCCGGCAATATCATCATCGTATAGTTCTAAGAACCCATCGATTGGCCCCATTCCGGCAA
AAGGTAGGCACACTTCAATCTATAGCAATAATAAATAAAAGCATTATGTCAGCAAAAAGAAGGATCACAGTAAGCTTGAG
CAAACAGAGCAAAATGGAAGCACAGTAATAATTAGCAGCACCAACCCTGAGCTCATCCTTTCTATTTCTCTTGTCATTGA
AGATGGTAACCAGACGTTCGGAAGTCAGGAATCTTGTTAATCCATTTGTCGACTCGCCGGTTTGTACAGCTATGCCTGTA
CACTCAAATAGCTGATTAACTCCTGCAAAAAGATCATGGTTTTCTTATCATTAACCAGCGGAAACAAAGTACAGATGTGG
ACATTCATCATAAGAGCATCTCCAATAGAAGATGCAAATTTGGAGATGTAAAACAAGAGATGCAAAAAATTACATCTCCA
AAAAGTGCGTTTTGCATCTCCAAAAAAGTGCCAACTCCAACAAAAGATGTATATTGGAGATGCAAAAGAGCAACTCAAAT
AGAAGATGCAAATGAAGATGTAAAACTATACTTCAACTACTACTCCATTTGAAACCTATACTTCAAACATAGCAAATTCA
ACTACTACTTCATTTCAAACATAATTAAACATAGTTCTAATTAATAAAAACATAGCAAACTCAACTACTACCCCGAAAGT
GGCGGCCGGCATCGCTAAACTCCACCCTAAAGTTGTCGGAGGGCTTCGCCTTCACGCCGAAGAACCTCGTCTTGCCTCAC
GGGGTCTTCCTCGGCGGCATGGCAACGACGGGGCGGGGTGGTGCGGTGCGACGGGGTAGGGCGGTGCGGCGACGGGGTGG
AGGCGGCGGGATCGAGGCGGTGTCGGGGTGGAGGCGGCGGGGTCGGGGTGGAGCGTGACGGAGCCGGAGCGGAGGCGGCG
GTGTCGGGGAGGAGCCGGGACGGCCTGGTGGGGTCGGGGCGGAGCAGGGCGGTGACGGAGTAGGGCGACCCGCTGGGGTC
GGGGCGATATGGGCCGTACGAGGCGGGCGGCAGTCAAAACTCTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAGATGGGGGGGGGGGAGTGAAATGACAGGCGATTGGTGTGCAGCTGCAACTTTTACATCTCCTATAGGTGGAGAT
ACAAATTTGCACCGCGAGGTGTTGTAGTTTACATCTCTGGAAGGCGGAGATGTAATTTTTTTTCATCTACATCATCTATT
GGAGAGGTGTTTTTGGCCCTTGGAGATGCAAAAGTTAGATATTTTTACATGTACATCTTCTATTGGTGATGCTCTAATTA
GAGCATATGGCAACATACCCAATTGAATAGCAATTAGCAGCATACGTACCGTCAAACAAAGCAAGAGAGACCACTGTTGG
AATAAACTCTTGGAAATCATCAGGCCCGCCGTGGGAGCCAAACGCTCGGCTTACGAAGGGTTCGGCAGGAGCAGCTTCCT
TCAAATCTGAGAGGCCAAACTGTTGTTCAAATTCTTCTGACTTCTCTGCCCAAATCTTGCGAACTAATCAAAAAACATGA
TGATGCAACTCAACTGTGAGCGCTCTGTTGGAGAGGAGAAACAATGTATGCACAGTATTATGTAGATGTAGATAGAAAGA
AAAGGAGAAGGAACGGGCGAAGTG-----GACTCACTTTTCGTTGCGGTTTCAAAAGCACACATGCCCCGTTTGTTTCTT
CCTTTGTCGCTCCCAAAGATACAAGGGTTAATGCAAGTTATTTTCTCCATTTGCAGGCCTGAAGCAGAAAGTAAGTAAAT
AAATATAGATGCCTTAGGGCAACCAAGGTGGCAGCCGCCATGACATTCTTGGAGCTCAAAGCTCTGATAGGTAATAAAAG
TTCACGTAAAAACTCAAAAGTTGCTAGGTTTAGAGAGAATAGGCCATGCATGACAGATTCGTGAGCTTAACTCGAACCAT
CAAACTAAACTACGTACCCA--------CAACTCGAATCAAATCGGTCAAAGCGCAGCTACTCCTGACTCAAACCAATCC
AAAAGTCAGTTGGATCTGCCAATGGATGGATTTAAGAAAACGAGATTGTTACCGAGGGGTGTTGAGTACGCTGCGGAATC
GGGGTTTTGATCCGCGATTTTTTTGGGTTTTATATTGTGGAGGGATCGGGGGGAAGAGA-GAGTCCTTCACGGGTAGGCC
TTAAAATATCCAGACCGGGCCCTAATTTCCGACTGCAACTATATATAGAGATCAGATCATATACGACACACAGATAAATA
AAAGAAGGAAAAAAGCCAGGGATCAGCCCCCCCCCCCCAAAGAAATCCAACCTAGCTTGCGT---------------GGC
AGTGTCTTTGATCGCCGTTCCACGTACGTCCCGCCGCCATGAGCGAGCCCGAGCGCGCCCATGTGATCCGCGGCCGCCGC
TGCAGCTCCGTGCTGGACGATGACGATCTCCTCTGGGAGATCCTTCTCCGCCTTTCGCCGCAGCCGTCCTCCCTCCCACG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCACAACGGATCCAGTGTTCCTCCGCCGGTTCTGCGAGCATCACCGGG
AGCCGCCCCTCCTTGGCGTCTTCGGGTGCGACAAAGAAAACATCGTGTTCGCTCCTTCCCTGGGCCCTCCTGACCGTATC
CCTTCCGTGCACTTTGACCTTGGACCACGGCGTAGCGGCAGGATCGCCAAGC---------------------TTGTGAA
CCCTGTGCTCGGGTGCCACCACGGTCGCGTCCTCATTGGGGACTATATACGGAAACAAGTCATTGTGTGTGACCCCATCA
CTGGCGAGCAATGTCGTGTGGCCGTCCCTTTGGAGTTCCGGAGGGACCACTTCTGCGGGGCAGTGCTCTGCGCCGCTAGC
GATCAAGGCCACGTGCACGGCGCATGCCATTCAAGCCCCTTTAAGGTGATATTGGTTTCCACGTGGTGTTACGATGATGG
ACGAACCCGTGCATGTGTTTACTCCTCGGAGACCGGTGCATGGGGCAATATCATCTCAACGGCATTTCCACGTTTCATTT
GGGATGCTGGTTGGTCTGGGTTGCTTGTTGGTAATGCACTTTACTGGTTGTGCGGAAATGCAGATTGCATACTTGAGTTT
GATTTGAAAAAGCTGAGTCTTGCTATCATCACCGCTCCACCCATTCCAATGGAATCCTGGTCTTGTCACATCATCCAGGC
TGAGGATGACGCTATTGGCTTTGCTGCATTGTCCTACCCACGCTTCCAAATGTGGCAGAGGAACTCCAATGGTCATGATG
TTCCCACATGGGTGTTGTGGAAAAACATTGAAATACATAACATTCTTGAGCTACCTCATCATATTGATAGAAGGTCAAC-
--AGGTATATATGGATACTCTCAGGATACTGATGAAATATTTATACTTGTGGAACCCAACAATGTATACTTGGTTCAACT
TAGGTCGATGCAATCAAAGAGACTTCATGGAATAGATTGTATCATGAAATACCATGCTTTCACGAGTTTCTGTACACCAG
GTAATTTCTCATCCATAGTCCTTATATTGTCGGAGTAATCAAATCCATTTATGTTCCATACATCATTGTTCGATCATCTA
TATTGTGGTTTCTGCAAGTCACTAACAACCTATACCTAATCAACAAT------TCTGCTACAAAGACAACTTAAGTTATG
GCCATAGTTTCTTTATGTTATTATTAGTTGTCTTCACTCTTGTGGGATCCAAATCAAATGTCAAATGAATAAAAATTGTG
AAATCAAATTACAGTATGCATGCAATGACTAGCTCATGTGTTTGAAGCAGCTAATGGCTAGCTAGCAATTTTTATGTCGC
TCGGCGCATCGCT---AGCCAAATATGCCCTCTGTGTTATTGATACTTCAAAACACCTTGATATATAGAAACCACGGTAT
GCTTCATCCACAAGCAAAAATAATGCATTTTTTTAGTACTATGGTTTTTATAATACTTTGCTGCCAAACCCAACCTTAAT
CTTTTATCAGCATGTGATCTACTACTAA-TTT-GAATCGTATGACCCCACATTTACTCTGAATCATGTAAGGCGTCCGAG
CGGGGAAGAG---------------GACTACTCCAAAATGATTCTTGAGAGGAACAAGTCGACACCACT-----------
GACAACAACTCTATCGTCACTCTGCACCCGACCACCCGTACACCATGGACAAGACGCAACTCTTTCTTGGCGCCAA-CCA
GTTGATGGT------------CAATGATGACAACTCCATCATTTCTCTACACCCGGACACCATGGACATGTTGCGGCTGC
ATGTGAAAACACTATCCTGCTGAAGGGGTGTGTGCTACCTAA--------------------------------------
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>chrUn_696
ATGGT---------------------------------------------------------------------------
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--------------------------TGGATTTAAGAAAACGAGATTGTTACCGAGGGGTGTTGTGTACGCCGCGGAATC
GGGGTTTTGATCCGCGACTTTTTGGGGTTTTATATCGTGGAGGGATGGGGGGGAAAGAGGGAGTCCTTCACGGGTAGGCC
TTCAAATATCCAGACCGGG-------------------------------ATCAAATCGTATACGACACACAGATAAATA
AAGGAAGGAAAAAAGCCAGGGATCAGCCCCCGAAAGAAGAAGAAATCCAACCTAGCTTGCGTTTGGCCCCCGAGCGTGGC
AGTGTCTTTGATCGCCGTTCCACGTACGTCCCGCCGCCATGGGCGAGCGCGAGCGCGCCCACGTGATCCGCGGCCGCCGC
GGCAGCTCCATGCTGGATGATGACGATCTCCTCTGGGAGATCCTTCTCCGCCTTCCGCCGCAGCCGTCCTCCCTCCCACG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCACAACAGATCCAGTGTTCCTCCGCCGGTTCTGCGAGCATCACCGGG
AGCCGCCCCTCCTTGGCGTCTTCGGGTACCACGAAGAACACTTCGTGTTCGCTCCTTCCCTGGACCTCCCCAACCCT---
--ACCCGTGCGCTTTGACCTTG----------------------------------------------------------
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>chrUn_696
ATGGT---------------------------------------------------------------------------
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--------------------------TGGATTTAAGAAAACGAGATTGTTACCGAGGGGTGTTGTGTACGCCGCGGAATC
GGGGTTTTGATCCGCGACTTTTTGGGGTTTTATATCGTGGAGGGATGGGGGGGAAAGAGGGAGTCCTTCACGGGTAGGCC
TTCAAATATCCAGACCGGG-------------------------------ATCAAATCGTATACGACACACAGATAAATA
AAGGAAGGAAAAAAGCCAGGGATCAGCCCCCGAAAGAAGAAGAAATCCAACCTAGCTTGCGTTTGGCCCCCGAGCGTGGC
AGTGTCTTTGATCGCCGTTCCACGTACGTCCCGCCGCCATGGGCGAGCGCGAGCGCGCCCACGTGATCCGCGGCCGCCGC
GGCAGCTCCATGCTGGATGATGACGATCTCCTCTGGGAGATCCTTCTCCGCCTTCCGCCGCAGCCGTCCTCCCTCCCACG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCACAACAGATCCAGTGTTCCTCCGCCGGTTCTGCGAGCATCACCGGG
AGCCGCCCCTCCTTGGCGTCTTCGGGTACCACGAAGAACACTTCGTGTTCGCTCCTTCCCTGGACCTCCCCAACCCT---
--ACCCGTGCGCTTTGACCTTG----------------------------------------------------------
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>chr3A_1050
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-------CCGTGCTGGAAGACGCCGATCTCCTCTGGGAGATACTCCTCCGCCTCCCGCCGCAGCCGTCCTCCCTCCCGCG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCGCCACCGATCCTAGGTTCCTCTGCCAGTTCTACAAGCATCACCGGA
AGCCCCCCCTCCTTGGCTATTTCGAGTACCACGAAGA---CATTGTGTTCACTCCAGTTCTGGACCCTCCCGACCGTGTC
CCACCCATTCGCTTTGACCTTGTACGATTTGGCAGACGCCG---CGATGATGACA------TCCGCTTCCCTCCCGCAAA
CAAAGTGCTTGGGTGCCGCCACGGCCTTGTCCTTGTCGGCGACCATTTGTGGAGAGAGGTCATTGTGTGTGACCCCATCA
CAGGCGAGCAGTGCCCCGTGACAGCCCCTTTGGAGTTCCAGAGGGGGTGGTTCAACGGGGCGGTGCTCTGCGCTGCCCGC
GATCAGGGCCACGTGCACGGCGCATGCTATTCAAGCCCCTTTAAGGTGGTCTTGGTGTCCATGT----------------
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>chr3A_1050
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-------CCGTGCTGGAAGACGCCGATCTCCTCTGGGAGATACTCCTCCGCCTCCCGCCGCAGCCGTCCTCCCTCCCGCG
TGCCTCCGCAGTCTGCAAGCAGTGGCGGCGCCTCGCCACCGATCCTAGGTTCCTCTGCCAGTTCTACAAGCATCACCGGA
AGCCCCCCCTCCTTGGCTATTTCGAGTACCACGAAGA---CATTGTGTTCACTCCAGTTCTGGACCCTCCCGACCGTGTC
CCACCCATTCGCTTTGACCTTGTACGATTTGGCAGACGCCG---CGATGATGACA------TCCGCTTCCCTCCCGCAAA
CAAAGTGCTTGGGTGCCGCCACGGCCTTGTCCTTGTCGGCGACCATTTGTGGAGAGAGGTCATTGTGTGTGACCCCATCA
CAGGCGAGCAGTGCCCCGTGACAGCCCCTTTGGAGTTCCAGAGGGGGTGGTTCAACGGGGCGGTGCTCTGCGCTTCCCGC
GATCAGGGCCACGTGCACGGCGCATGCTATTCAAGCCCCTTTAAGGTGGTCTTGGTGTCCATGT----------------
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>chr3A_1050
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-------CCGTGCTGGAAGACGATGATCTCCTTTGGGAGATACTCCTCCACCTCCCGCCGCAGCCGTCCTCCCTCCCGCG
TGCCTCCACGGTCTGTAAACGGTGGCGGCGCCTCGCCACCAACCGCAGGTTCCTCTGCCGGTTCTACATGCACCACCGGA
AGCCGCCCCTCCTTGGCTACTTCGAGTACCGCGAAGG---CATCGTGTTCACTCCGGTTCTGGACCCTCCTGACCGTATC
CCTCCCACGCGCTTCGACCTTGTACGATATGACGGCCATCACGACGATGATGACAGCCTGCTCCGCTTCCCCATTGAGAA
CATTCTGCTCGGGTGCCGTCACGGCCTTGTACTTGTTGGGGACTATTTGTGGAGAAAATTCGTTGTGTGTGATCCTATCA
CCAGCGAGCAGTGCCCCGTGGACGCCCCTTTGGAGTTCCATGATGAGTGCTTCAATGGGGCTGTGCTCTTCATAGACCGC
GATAAGGGCCACGTGCACGATGCATGCCATTCGAGCCCCT----------------------------------------
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>chr3D_1400
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----------------------------------------------------------------GTGTGCGCCCCCATCA
CCGGCGAGCAGCAGCGCGTGCCCATCCCGACGGAGTTCGACAGGGGCTGTTTCATGGGTACGGTGATGTGCGCTGCCGGC
GACCCTGGCCACGTGCACGGCGCCTGTCATTCGGGCCCCTTTAAGGTGGTCTTGGTGTCCGCTT---------ATGATGA
GGAAAAGATCGCCTGTGTTTACTTCTCGGAGACTGGTGCATGGGGCAATCTCATCTCGACGGTTGGCCTTTTCCAGTGAC
GACGTCCCGTTGTC-CTGGGTTGCTTGTTGGCAGGACCCTTTACTGGCTGTCCACGGGTGATAC---CATAATCGAGTTT
GATTTGGAAGAGCAAAGTCTAGCTGTGATGAGTGTGCCTCCTGGTACAGAGGAAGTCCGCGAGCGTCAGATCATCCTGGC
TGAGGATGGCGCTATTGGCTTTGCAATCTTGTCTTACCCGCATTTTCAAATGTGGCAGAGAAACATGAACTGTCGTGGTG
TTGGCACATGGGTGCCGTGGAAAACCATTCAAATGCACACCATTCTTGGCCTCCCTCCCCAGCTTGAGTTACCTATAATG
AAAACTATATTGTGCTATAGTGAGGATACCAATACAATTTTTTTGTCTGTGGATGAG---AATGTATACATGGTTCAACT
CAAGTCGATGCAATCCAAGAGACTTTATACAA------------------------------------------------
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>chr1A_2381
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--------------TTTGCATGCAACGACTTGCTCGCGTGTTTGCGGCACCTAATGGCTAGCTAGCAATTTTTACCTCGA
TGTGCATAGCACTAGCAGCCAAACATTCCCTCTGTTTTATTGATACTTCAAAATACTTTGATATATA-AAATCACGGTAT
TATTAAAACCACGATT-------------------------TGTTTTCTATAATACTTTGCTGGCGAACACAACCTTGAT
CTCTTATTAGTGTGTGATCTATTATTAA-TTTTGAATCGTCTGACTCCATATTTATTTCGAATCATGTAAGGCATCCGAG
AGGTAAGAATCCAAGAGAGAAGGATGACTGCTCCACAACGATTTTCAAGGGGAACAAGTCGACACCAAAGACATACCAAA
GACCACAACTTTATTGCCACTCTGCACCCGACCACCCGTACACCATGGACAAGATACAACTCTTTCTTGGCGCTAAACCG
ATTGATGGTTGACAAGGCCACCAATAATGATAACTCCATCATCACTGTACACCCGGACACCATGGACATGTTGCAGCTTT
CCGTGGCAAAACTGTCCTATTGAAGGGATG--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>SNPs
------------S-----------------------------------------------------------------S-
--------S----------------------------------------------S------------------------
---------------------------------------S----------------------------------------
---------S--SSSS--SSSSSSS-------------------------------------------------------
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------------------S--S-SSSSSS----------S----------------------------------------
-----S--S------------S----------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------SSSSSSSS----------------------------------------------------
--------------------------------------------------------------------------------
------------------SS------------------------------------------------------------
-----S------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------------------S-------------S-----S--SS-S----------------------------
--S-------------------------------------------S---------------------------------
---------------------------------------------S----------------------------------
-----------------------------------------S-----S-----------------S----S-S-------
---------S---------------------------------------------------S---------------S--
------------S-------S--------S-----------------------------------S--------------
--S--------------------------------------S--------------------------------------
----------S---------------S-------SS-S----------------------------S----S--------
----------------------S------------SS--------------S---------------------S------
----------------------------------------------SSS----------S--------------------
-----------------------S-S-S----SSS--SSSSS------S----------------------S--------
---S---------------SS---------SS---S-SS-S-S--------------S-----S----------------
----------SS---S-----S-S--------S--------------SSSSSS---------------------------
-S-S----------------------------S---------S-S-------------------------S---------
-------------S------------------------------------------------------------------
----S----------------------------------------------------------S-----------S----
-S-SS--------------------------------------------------------------S------------
----------------------------S---------S------------------------------------S----
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------SS--------------S---------S--------------------------
-----------------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3547
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-------AACTACGTACCCACAAGGCC-----------------------------------------------------
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>reverse_4638
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-----------------------------------------------------------------------------CTT
GGGATGCTGGTTCGTCT---------------------------------------------------------------
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>forward_4219
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---------------------------------------ACATCGTGTTCGCTCCTTCA---------------------
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>reverse_5248
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-----------------------------------------------TGCCCCTCTGCTACAAAGAC-------------
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---------------------------------------
