Multiple sequence alignment - TraesCS3A01G011000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G011000 chr3A 100.000 2335 0 0 1 2335 9072442 9074776 0.000000e+00 4313.0
1 TraesCS3A01G011000 chr3A 98.478 460 7 0 1876 2335 569579842 569579383 0.000000e+00 811.0
2 TraesCS3A01G011000 chr3A 77.439 164 29 7 949 1106 9223998 9224159 8.890000e-15 91.6
3 TraesCS3A01G011000 chr3D 95.538 874 31 5 239 1109 480517 479649 0.000000e+00 1391.0
4 TraesCS3A01G011000 chr3D 94.531 768 25 8 1112 1878 479615 478864 0.000000e+00 1170.0
5 TraesCS3A01G011000 chr3D 87.209 258 23 1 1 248 480802 480545 3.800000e-73 285.0
6 TraesCS3A01G011000 chr3B 82.266 1156 110 42 766 1881 5817443 5816343 0.000000e+00 911.0
7 TraesCS3A01G011000 chr3B 82.713 914 89 31 795 1664 6085289 6086177 0.000000e+00 749.0
8 TraesCS3A01G011000 chr3B 85.124 484 40 14 763 1224 6104148 6104621 1.260000e-127 466.0
9 TraesCS3A01G011000 chr3B 88.462 208 24 0 1368 1575 6110054 6110261 3.850000e-63 252.0
10 TraesCS3A01G011000 chr3B 90.323 124 9 2 1219 1339 6109931 6110054 2.400000e-35 159.0
11 TraesCS3A01G011000 chr3B 93.333 45 2 1 716 760 779581021 779580978 5.390000e-07 65.8
12 TraesCS3A01G011000 chr3B 91.489 47 3 1 986 1032 6130945 6130990 1.940000e-06 63.9
13 TraesCS3A01G011000 chr5A 98.920 463 4 1 1874 2335 380625749 380625287 0.000000e+00 826.0
14 TraesCS3A01G011000 chr7B 98.913 460 5 0 1876 2335 78318645 78318186 0.000000e+00 822.0
15 TraesCS3A01G011000 chr7B 97.391 460 11 1 1876 2335 1144594 1144136 0.000000e+00 782.0
16 TraesCS3A01G011000 chr4A 98.696 460 6 0 1876 2335 607268140 607268599 0.000000e+00 817.0
17 TraesCS3A01G011000 chr7A 97.826 460 10 0 1876 2335 621351364 621350905 0.000000e+00 795.0
18 TraesCS3A01G011000 chr7A 95.106 470 19 4 1869 2335 488496069 488496537 0.000000e+00 737.0
19 TraesCS3A01G011000 chr7A 92.683 41 3 0 719 759 85627708 85627668 2.510000e-05 60.2
20 TraesCS3A01G011000 chr7A 92.683 41 3 0 719 759 85677380 85677340 2.510000e-05 60.2
21 TraesCS3A01G011000 chr1A 96.304 460 15 2 1878 2335 569143967 569143508 0.000000e+00 754.0
22 TraesCS3A01G011000 chr2A 95.879 461 17 2 1877 2335 737504281 737503821 0.000000e+00 745.0
23 TraesCS3A01G011000 chrUn 85.356 478 38 14 769 1224 35553607 35553140 1.260000e-127 466.0
24 TraesCS3A01G011000 chrUn 85.124 484 40 14 763 1224 293672019 293672492 1.260000e-127 466.0
25 TraesCS3A01G011000 chr5B 92.000 50 3 1 718 766 485569940 485569891 4.160000e-08 69.4
26 TraesCS3A01G011000 chr1B 93.478 46 3 0 719 764 51601811 51601856 4.160000e-08 69.4
27 TraesCS3A01G011000 chr6D 89.362 47 5 0 718 764 368363666 368363620 2.510000e-05 60.2
28 TraesCS3A01G011000 chr6B 92.683 41 3 0 719 759 544695627 544695587 2.510000e-05 60.2
29 TraesCS3A01G011000 chr7D 89.130 46 5 0 719 764 603826479 603826524 9.010000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G011000 chr3A 9072442 9074776 2334 False 4313.000000 4313 100.000 1 2335 1 chr3A.!!$F1 2334
1 TraesCS3A01G011000 chr3D 478864 480802 1938 True 948.666667 1391 92.426 1 1878 3 chr3D.!!$R1 1877
2 TraesCS3A01G011000 chr3B 5816343 5817443 1100 True 911.000000 911 82.266 766 1881 1 chr3B.!!$R1 1115
3 TraesCS3A01G011000 chr3B 6085289 6086177 888 False 749.000000 749 82.713 795 1664 1 chr3B.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 759 0.1791 CTATGCTGCAGCTGGTACGT 60.179 55.0 36.61 16.83 42.66 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2089 0.033601 TGTGGAACCTTGTTGGCACT 60.034 50.0 0.0 0.0 40.22 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.001641 ATTCTGTGCTCACTGGGGC 60.002 57.895 6.98 0.00 0.00 5.80
37 38 3.063650 ACTGGGGCCCAACTATTATGAT 58.936 45.455 28.43 0.34 30.80 2.45
41 42 4.667858 TGGGGCCCAACTATTATGATTACT 59.332 41.667 26.55 0.00 0.00 2.24
53 54 6.841781 ATTATGATTACTACTGGTTGGGGT 57.158 37.500 0.00 0.00 0.00 4.95
98 99 2.159435 AGGAAGTTGTGCACACGTTTTC 60.159 45.455 21.56 18.64 0.00 2.29
102 103 3.843999 AGTTGTGCACACGTTTTCATTT 58.156 36.364 21.56 0.00 0.00 2.32
103 104 4.241681 AGTTGTGCACACGTTTTCATTTT 58.758 34.783 21.56 0.00 0.00 1.82
104 105 4.688413 AGTTGTGCACACGTTTTCATTTTT 59.312 33.333 21.56 0.00 0.00 1.94
109 110 7.572759 TGTGCACACGTTTTCATTTTTAAAAA 58.427 26.923 17.42 15.38 0.00 1.94
142 143 1.356938 CCGCCTCCGTCTAGAAAAAC 58.643 55.000 0.00 0.00 0.00 2.43
210 221 2.512692 ATCAATGCAACCTACCAGCA 57.487 45.000 0.00 0.00 43.14 4.41
214 225 0.967380 ATGCAACCTACCAGCAAGCC 60.967 55.000 0.00 0.00 42.15 4.35
219 230 1.127567 ACCTACCAGCAAGCCTCACA 61.128 55.000 0.00 0.00 0.00 3.58
310 359 3.323751 AGCTTTTTCATCATGGCCAAC 57.676 42.857 10.96 0.00 0.00 3.77
352 401 1.076412 TGGTTGGCTGCCTTTCACA 60.076 52.632 21.03 8.92 0.00 3.58
353 402 1.363807 GGTTGGCTGCCTTTCACAC 59.636 57.895 21.03 6.68 0.00 3.82
389 438 8.826765 TGGGTTTAATAGTCTCTTCATCTTTCT 58.173 33.333 0.00 0.00 0.00 2.52
428 477 1.806247 GCAAGCTTGGGGTGTTCAAAC 60.806 52.381 27.10 2.68 0.00 2.93
539 588 0.536006 GCTCAGCTGGTGAACCACTT 60.536 55.000 15.13 0.00 42.01 3.16
550 599 3.438360 GTGAACCACTTGCTCTTTGTTG 58.562 45.455 0.00 0.00 0.00 3.33
555 604 1.670811 CACTTGCTCTTTGTTGACGGT 59.329 47.619 0.00 0.00 0.00 4.83
618 669 3.782523 TGGATTCCCACTCTCTTATTGCT 59.217 43.478 0.00 0.00 37.58 3.91
670 721 1.160989 ATGCGCAATTGTACCACGAA 58.839 45.000 17.11 0.00 0.00 3.85
706 757 2.315246 GCTATGCTGCAGCTGGTAC 58.685 57.895 36.61 19.63 42.66 3.34
707 758 1.493950 GCTATGCTGCAGCTGGTACG 61.494 60.000 36.61 20.00 42.66 3.67
708 759 0.179100 CTATGCTGCAGCTGGTACGT 60.179 55.000 36.61 16.83 42.66 3.57
709 760 1.067060 CTATGCTGCAGCTGGTACGTA 59.933 52.381 36.61 16.61 42.66 3.57
710 761 0.460284 ATGCTGCAGCTGGTACGTAC 60.460 55.000 36.61 17.56 42.66 3.67
711 762 1.080093 GCTGCAGCTGGTACGTACA 60.080 57.895 31.33 11.97 38.21 2.90
712 763 1.352156 GCTGCAGCTGGTACGTACAC 61.352 60.000 31.33 15.90 38.21 2.90
727 778 2.029728 CGTACACGTACCTACTTCCTCG 59.970 54.545 1.86 0.00 32.61 4.63
752 803 9.869844 CGGTCTCACAATATAAGATCATTTTTC 57.130 33.333 0.00 0.00 0.00 2.29
813 864 8.918202 TTAAACAGTCTTACAGATGTGGAAAT 57.082 30.769 0.00 0.00 0.00 2.17
1031 1101 1.493950 GCGGCATCATCTTCCTCGTG 61.494 60.000 0.00 0.00 0.00 4.35
1042 1112 4.394712 CCTCGTGGGTCCTGTGCC 62.395 72.222 0.00 0.00 0.00 5.01
1100 1170 0.593128 AACGTTGAGCTTGTCCATGC 59.407 50.000 0.00 0.00 0.00 4.06
1109 1180 3.019564 AGCTTGTCCATGCAGGTAATTC 58.980 45.455 0.00 0.00 39.02 2.17
1110 1181 2.223340 GCTTGTCCATGCAGGTAATTCG 60.223 50.000 0.00 0.00 39.02 3.34
1161 1263 2.148916 TCGATGTGCCAACCGATATC 57.851 50.000 0.00 0.00 0.00 1.63
1181 1295 0.527565 CCTATTTGTGTGCAGGTGGC 59.472 55.000 0.00 0.00 45.13 5.01
1299 1416 2.443016 CTACTCCTCCGGCAGCCT 60.443 66.667 10.54 0.00 0.00 4.58
1339 1456 3.189287 GCTGGCAGCCATATGTAATGTAC 59.811 47.826 28.87 0.00 34.48 2.90
1440 1566 7.041303 CCCAGTGGTACTAGTTCTTTTTCTTTC 60.041 40.741 8.74 0.00 0.00 2.62
1500 1626 4.621886 TGTTTGTTTGTTCGGTTTTGCTAC 59.378 37.500 0.00 0.00 0.00 3.58
1635 1762 1.290491 AATTGCCAAATTGTGCGCCG 61.290 50.000 4.18 0.00 34.63 6.46
1667 1795 6.048732 TCTATCATGGTTGCTGTTAACTGA 57.951 37.500 15.89 4.71 0.00 3.41
1762 1891 4.188937 AGGGTAAGGGTCATACATACGA 57.811 45.455 0.00 0.00 0.00 3.43
1764 1893 4.343239 AGGGTAAGGGTCATACATACGAAC 59.657 45.833 0.00 0.00 0.00 3.95
1771 1902 4.986659 GGGTCATACATACGAACATACACC 59.013 45.833 0.00 0.00 0.00 4.16
1772 1903 5.221382 GGGTCATACATACGAACATACACCT 60.221 44.000 0.00 0.00 0.00 4.00
1777 1908 8.727910 TCATACATACGAACATACACCTATCTC 58.272 37.037 0.00 0.00 0.00 2.75
1791 1922 3.243101 ACCTATCTCTATGAACACACGCG 60.243 47.826 3.53 3.53 0.00 6.01
1814 1947 4.744867 GCACACACTATCCCTATGAGCAAT 60.745 45.833 0.00 0.00 0.00 3.56
1878 2011 8.670521 ATCCTCCTTCCATTAAATTGTCTTTT 57.329 30.769 0.00 0.00 0.00 2.27
1912 2045 4.804420 TCTCCCCGGCCTCTGCAT 62.804 66.667 0.00 0.00 40.13 3.96
1913 2046 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
1915 2048 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
1916 2049 2.045045 CCCGGCCTCTGCATCAAA 60.045 61.111 0.00 0.00 40.13 2.69
1917 2050 1.678635 CCCGGCCTCTGCATCAAAA 60.679 57.895 0.00 0.00 40.13 2.44
1918 2051 1.508088 CCGGCCTCTGCATCAAAAC 59.492 57.895 0.00 0.00 40.13 2.43
1919 2052 1.135315 CGGCCTCTGCATCAAAACG 59.865 57.895 0.00 0.00 40.13 3.60
1920 2053 1.298157 CGGCCTCTGCATCAAAACGA 61.298 55.000 0.00 0.00 40.13 3.85
1921 2054 1.098050 GGCCTCTGCATCAAAACGAT 58.902 50.000 0.00 0.00 40.13 3.73
1930 2063 2.375110 CATCAAAACGATGCATACGGC 58.625 47.619 18.34 0.00 44.95 5.68
1931 2064 0.730265 TCAAAACGATGCATACGGCC 59.270 50.000 18.34 0.00 43.89 6.13
1932 2065 0.449786 CAAAACGATGCATACGGCCA 59.550 50.000 18.34 0.00 43.89 5.36
1933 2066 1.065401 CAAAACGATGCATACGGCCAT 59.935 47.619 18.34 0.00 43.89 4.40
1934 2067 0.944386 AAACGATGCATACGGCCATC 59.056 50.000 18.34 0.00 43.89 3.51
1935 2068 0.106708 AACGATGCATACGGCCATCT 59.893 50.000 18.34 0.00 43.89 2.90
1936 2069 0.106708 ACGATGCATACGGCCATCTT 59.893 50.000 18.34 0.00 43.89 2.40
1937 2070 1.343142 ACGATGCATACGGCCATCTTA 59.657 47.619 18.34 0.00 43.89 2.10
1938 2071 2.028112 ACGATGCATACGGCCATCTTAT 60.028 45.455 18.34 0.00 43.89 1.73
1939 2072 3.002791 CGATGCATACGGCCATCTTATT 58.997 45.455 2.24 0.00 43.89 1.40
1940 2073 4.180817 CGATGCATACGGCCATCTTATTA 58.819 43.478 2.24 0.00 43.89 0.98
1941 2074 4.629634 CGATGCATACGGCCATCTTATTAA 59.370 41.667 2.24 0.00 43.89 1.40
1942 2075 5.294306 CGATGCATACGGCCATCTTATTAAT 59.706 40.000 2.24 0.00 43.89 1.40
1943 2076 6.478673 CGATGCATACGGCCATCTTATTAATA 59.521 38.462 2.24 0.00 43.89 0.98
1944 2077 7.011016 CGATGCATACGGCCATCTTATTAATAA 59.989 37.037 2.24 7.66 43.89 1.40
1945 2078 7.987750 TGCATACGGCCATCTTATTAATAAA 57.012 32.000 2.24 1.93 43.89 1.40
1946 2079 8.397575 TGCATACGGCCATCTTATTAATAAAA 57.602 30.769 2.24 0.00 43.89 1.52
1947 2080 8.851145 TGCATACGGCCATCTTATTAATAAAAA 58.149 29.630 2.24 1.65 43.89 1.94
1969 2102 3.758715 GCAAAAGTGCCAACAAGGT 57.241 47.368 0.00 0.00 45.68 3.50
1970 2103 2.022764 GCAAAAGTGCCAACAAGGTT 57.977 45.000 0.00 0.00 45.68 3.50
1971 2104 1.933181 GCAAAAGTGCCAACAAGGTTC 59.067 47.619 0.00 0.00 45.68 3.62
1972 2105 2.549926 CAAAAGTGCCAACAAGGTTCC 58.450 47.619 0.00 0.00 40.61 3.62
1973 2106 1.859302 AAAGTGCCAACAAGGTTCCA 58.141 45.000 0.00 0.00 40.61 3.53
1974 2107 1.111277 AAGTGCCAACAAGGTTCCAC 58.889 50.000 0.00 0.00 40.61 4.02
1975 2108 0.033601 AGTGCCAACAAGGTTCCACA 60.034 50.000 10.26 0.00 40.61 4.17
1976 2109 0.820871 GTGCCAACAAGGTTCCACAA 59.179 50.000 0.00 0.00 40.61 3.33
1977 2110 1.412343 GTGCCAACAAGGTTCCACAAT 59.588 47.619 0.00 0.00 40.61 2.71
1978 2111 1.686052 TGCCAACAAGGTTCCACAATC 59.314 47.619 0.00 0.00 40.61 2.67
1979 2112 1.963515 GCCAACAAGGTTCCACAATCT 59.036 47.619 0.00 0.00 40.61 2.40
1980 2113 2.029918 GCCAACAAGGTTCCACAATCTC 60.030 50.000 0.00 0.00 40.61 2.75
1981 2114 2.558359 CCAACAAGGTTCCACAATCTCC 59.442 50.000 0.00 0.00 0.00 3.71
1982 2115 3.221771 CAACAAGGTTCCACAATCTCCA 58.778 45.455 0.00 0.00 0.00 3.86
1983 2116 3.146104 ACAAGGTTCCACAATCTCCAG 57.854 47.619 0.00 0.00 0.00 3.86
1984 2117 2.224867 ACAAGGTTCCACAATCTCCAGG 60.225 50.000 0.00 0.00 0.00 4.45
1985 2118 1.747444 AGGTTCCACAATCTCCAGGT 58.253 50.000 0.00 0.00 0.00 4.00
1986 2119 2.915869 AGGTTCCACAATCTCCAGGTA 58.084 47.619 0.00 0.00 0.00 3.08
1987 2120 3.256704 AGGTTCCACAATCTCCAGGTAA 58.743 45.455 0.00 0.00 0.00 2.85
1988 2121 3.655777 AGGTTCCACAATCTCCAGGTAAA 59.344 43.478 0.00 0.00 0.00 2.01
1989 2122 3.756963 GGTTCCACAATCTCCAGGTAAAC 59.243 47.826 0.00 0.00 0.00 2.01
1990 2123 4.394729 GTTCCACAATCTCCAGGTAAACA 58.605 43.478 0.00 0.00 0.00 2.83
1991 2124 4.715534 TCCACAATCTCCAGGTAAACAA 57.284 40.909 0.00 0.00 0.00 2.83
1992 2125 5.055265 TCCACAATCTCCAGGTAAACAAA 57.945 39.130 0.00 0.00 0.00 2.83
1993 2126 5.450453 TCCACAATCTCCAGGTAAACAAAA 58.550 37.500 0.00 0.00 0.00 2.44
1994 2127 5.534654 TCCACAATCTCCAGGTAAACAAAAG 59.465 40.000 0.00 0.00 0.00 2.27
1995 2128 5.278957 CCACAATCTCCAGGTAAACAAAAGG 60.279 44.000 0.00 0.00 0.00 3.11
1996 2129 5.534654 CACAATCTCCAGGTAAACAAAAGGA 59.465 40.000 0.00 0.00 0.00 3.36
1997 2130 6.209391 CACAATCTCCAGGTAAACAAAAGGAT 59.791 38.462 0.00 0.00 0.00 3.24
1998 2131 7.393234 CACAATCTCCAGGTAAACAAAAGGATA 59.607 37.037 0.00 0.00 0.00 2.59
1999 2132 7.947890 ACAATCTCCAGGTAAACAAAAGGATAA 59.052 33.333 0.00 0.00 0.00 1.75
2000 2133 8.802267 CAATCTCCAGGTAAACAAAAGGATAAA 58.198 33.333 0.00 0.00 0.00 1.40
2001 2134 8.950007 ATCTCCAGGTAAACAAAAGGATAAAA 57.050 30.769 0.00 0.00 0.00 1.52
2002 2135 8.770010 TCTCCAGGTAAACAAAAGGATAAAAA 57.230 30.769 0.00 0.00 0.00 1.94
2003 2136 8.856103 TCTCCAGGTAAACAAAAGGATAAAAAG 58.144 33.333 0.00 0.00 0.00 2.27
2004 2137 8.770010 TCCAGGTAAACAAAAGGATAAAAAGA 57.230 30.769 0.00 0.00 0.00 2.52
2005 2138 9.203163 TCCAGGTAAACAAAAGGATAAAAAGAA 57.797 29.630 0.00 0.00 0.00 2.52
2006 2139 9.825109 CCAGGTAAACAAAAGGATAAAAAGAAA 57.175 29.630 0.00 0.00 0.00 2.52
2012 2145 7.425577 ACAAAAGGATAAAAAGAAATGCAGC 57.574 32.000 0.00 0.00 0.00 5.25
2013 2146 7.219322 ACAAAAGGATAAAAAGAAATGCAGCT 58.781 30.769 0.00 0.00 0.00 4.24
2014 2147 7.386025 ACAAAAGGATAAAAAGAAATGCAGCTC 59.614 33.333 0.00 0.00 0.00 4.09
2015 2148 6.594788 AAGGATAAAAAGAAATGCAGCTCA 57.405 33.333 0.00 0.00 0.00 4.26
2016 2149 5.958955 AGGATAAAAAGAAATGCAGCTCAC 58.041 37.500 0.00 0.00 0.00 3.51
2017 2150 5.477984 AGGATAAAAAGAAATGCAGCTCACA 59.522 36.000 0.00 0.00 0.00 3.58
2018 2151 5.574443 GGATAAAAAGAAATGCAGCTCACAC 59.426 40.000 0.00 0.00 0.00 3.82
2019 2152 4.389890 AAAAAGAAATGCAGCTCACACA 57.610 36.364 0.00 0.00 0.00 3.72
2020 2153 3.637998 AAAGAAATGCAGCTCACACAG 57.362 42.857 0.00 0.00 0.00 3.66
2021 2154 2.556144 AGAAATGCAGCTCACACAGA 57.444 45.000 0.00 0.00 0.00 3.41
2031 2164 2.254918 CTCACACAGAGCTACAGACG 57.745 55.000 0.00 0.00 37.59 4.18
2032 2165 0.881796 TCACACAGAGCTACAGACGG 59.118 55.000 0.00 0.00 0.00 4.79
2033 2166 0.734253 CACACAGAGCTACAGACGGC 60.734 60.000 0.00 0.00 0.00 5.68
2034 2167 0.896019 ACACAGAGCTACAGACGGCT 60.896 55.000 0.00 0.00 41.88 5.52
2035 2168 1.095600 CACAGAGCTACAGACGGCTA 58.904 55.000 0.00 0.00 39.05 3.93
2036 2169 1.064803 CACAGAGCTACAGACGGCTAG 59.935 57.143 0.00 0.00 39.05 3.42
2037 2170 1.065345 ACAGAGCTACAGACGGCTAGA 60.065 52.381 0.00 0.00 39.05 2.43
2038 2171 2.226330 CAGAGCTACAGACGGCTAGAT 58.774 52.381 0.00 0.00 39.05 1.98
2039 2172 3.181453 ACAGAGCTACAGACGGCTAGATA 60.181 47.826 0.00 0.00 39.05 1.98
2040 2173 4.006989 CAGAGCTACAGACGGCTAGATAT 58.993 47.826 0.00 0.00 39.05 1.63
2041 2174 5.179533 CAGAGCTACAGACGGCTAGATATA 58.820 45.833 0.00 0.00 39.05 0.86
2042 2175 5.064198 CAGAGCTACAGACGGCTAGATATAC 59.936 48.000 0.00 0.00 39.05 1.47
2043 2176 4.907809 AGCTACAGACGGCTAGATATACA 58.092 43.478 0.00 0.00 37.00 2.29
2044 2177 5.314529 AGCTACAGACGGCTAGATATACAA 58.685 41.667 0.00 0.00 37.00 2.41
2045 2178 5.768662 AGCTACAGACGGCTAGATATACAAA 59.231 40.000 0.00 0.00 37.00 2.83
2046 2179 5.857517 GCTACAGACGGCTAGATATACAAAC 59.142 44.000 0.00 0.00 0.00 2.93
2047 2180 6.294065 GCTACAGACGGCTAGATATACAAACT 60.294 42.308 0.00 0.00 0.00 2.66
2048 2181 7.094890 GCTACAGACGGCTAGATATACAAACTA 60.095 40.741 0.00 0.00 0.00 2.24
2049 2182 7.204496 ACAGACGGCTAGATATACAAACTAG 57.796 40.000 0.00 0.00 37.32 2.57
2080 2213 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
2081 2214 2.332654 CCACAACCGGCTGGCTAAC 61.333 63.158 12.89 0.00 39.70 2.34
2082 2215 1.599518 CACAACCGGCTGGCTAACA 60.600 57.895 12.89 0.00 39.70 2.41
2083 2216 1.149627 ACAACCGGCTGGCTAACAA 59.850 52.632 12.89 0.00 39.70 2.83
2084 2217 0.251165 ACAACCGGCTGGCTAACAAT 60.251 50.000 12.89 0.00 39.70 2.71
2085 2218 1.003812 ACAACCGGCTGGCTAACAATA 59.996 47.619 12.89 0.00 39.70 1.90
2086 2219 1.670811 CAACCGGCTGGCTAACAATAG 59.329 52.381 12.89 0.00 39.70 1.73
2087 2220 1.200519 ACCGGCTGGCTAACAATAGA 58.799 50.000 12.89 0.00 39.70 1.98
2088 2221 1.768870 ACCGGCTGGCTAACAATAGAT 59.231 47.619 12.89 0.00 39.70 1.98
2089 2222 2.969950 ACCGGCTGGCTAACAATAGATA 59.030 45.455 12.89 0.00 39.70 1.98
2090 2223 3.006967 ACCGGCTGGCTAACAATAGATAG 59.993 47.826 12.89 0.00 39.70 2.08
2091 2224 3.589988 CGGCTGGCTAACAATAGATAGG 58.410 50.000 0.00 0.00 0.00 2.57
2092 2225 3.617531 CGGCTGGCTAACAATAGATAGGG 60.618 52.174 0.00 0.00 0.00 3.53
2093 2226 3.583086 GGCTGGCTAACAATAGATAGGGA 59.417 47.826 0.00 0.00 0.00 4.20
2094 2227 4.041691 GGCTGGCTAACAATAGATAGGGAA 59.958 45.833 0.00 0.00 0.00 3.97
2095 2228 5.456186 GGCTGGCTAACAATAGATAGGGAAA 60.456 44.000 0.00 0.00 0.00 3.13
2096 2229 5.470437 GCTGGCTAACAATAGATAGGGAAAC 59.530 44.000 0.00 0.00 0.00 2.78
2097 2230 6.689177 GCTGGCTAACAATAGATAGGGAAACT 60.689 42.308 0.00 0.00 0.00 2.66
2098 2231 7.472945 GCTGGCTAACAATAGATAGGGAAACTA 60.473 40.741 0.00 0.00 35.80 2.24
2099 2232 8.326765 TGGCTAACAATAGATAGGGAAACTAA 57.673 34.615 0.00 0.00 34.79 2.24
2100 2233 8.945193 TGGCTAACAATAGATAGGGAAACTAAT 58.055 33.333 0.00 0.00 34.79 1.73
2101 2234 9.794719 GGCTAACAATAGATAGGGAAACTAATT 57.205 33.333 0.00 0.00 34.79 1.40
2115 2248 8.563123 GGGAAACTAATTGCCTATCCTATTAC 57.437 38.462 0.00 0.00 45.56 1.89
2116 2249 8.161425 GGGAAACTAATTGCCTATCCTATTACA 58.839 37.037 0.00 0.00 45.56 2.41
2117 2250 9.740710 GGAAACTAATTGCCTATCCTATTACAT 57.259 33.333 0.00 0.00 0.00 2.29
2120 2253 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
2121 2254 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
2122 2255 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
2123 2256 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
2124 2257 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
2125 2258 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
2126 2259 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
2127 2260 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
2128 2261 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
2129 2262 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
2130 2263 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
2131 2264 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
2132 2265 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
2133 2266 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
2134 2267 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
2135 2268 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
2137 2270 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
2138 2271 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
2139 2272 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
2140 2273 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
2141 2274 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
2142 2275 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
2143 2276 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
2144 2277 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
2145 2278 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
2146 2279 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
2147 2280 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
2148 2281 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
2149 2282 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
2150 2283 1.784358 ACCGGTTGAAGATATCCCGA 58.216 50.000 16.17 0.00 41.08 5.14
2151 2284 1.687123 ACCGGTTGAAGATATCCCGAG 59.313 52.381 16.17 10.10 41.08 4.63
2152 2285 1.605712 CCGGTTGAAGATATCCCGAGC 60.606 57.143 16.17 9.53 41.08 5.03
2153 2286 1.784525 GGTTGAAGATATCCCGAGCG 58.215 55.000 0.00 0.00 0.00 5.03
2154 2287 1.340248 GGTTGAAGATATCCCGAGCGA 59.660 52.381 0.00 0.00 0.00 4.93
2155 2288 2.395654 GTTGAAGATATCCCGAGCGAC 58.604 52.381 0.00 0.00 0.00 5.19
2156 2289 0.959553 TGAAGATATCCCGAGCGACC 59.040 55.000 0.00 0.00 0.00 4.79
2157 2290 0.959553 GAAGATATCCCGAGCGACCA 59.040 55.000 0.00 0.00 0.00 4.02
2158 2291 1.546476 GAAGATATCCCGAGCGACCAT 59.454 52.381 0.00 0.00 0.00 3.55
2159 2292 1.178276 AGATATCCCGAGCGACCATC 58.822 55.000 0.00 0.00 0.00 3.51
2160 2293 1.178276 GATATCCCGAGCGACCATCT 58.822 55.000 0.00 0.00 0.00 2.90
2161 2294 1.133407 GATATCCCGAGCGACCATCTC 59.867 57.143 0.00 0.00 0.00 2.75
2162 2295 0.894184 TATCCCGAGCGACCATCTCC 60.894 60.000 0.00 0.00 0.00 3.71
2163 2296 3.917760 CCCGAGCGACCATCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
2164 2297 3.147595 CCGAGCGACCATCTCCCA 61.148 66.667 0.00 0.00 0.00 4.37
2165 2298 2.721167 CCGAGCGACCATCTCCCAA 61.721 63.158 0.00 0.00 0.00 4.12
2166 2299 1.519455 CGAGCGACCATCTCCCAAC 60.519 63.158 0.00 0.00 0.00 3.77
2167 2300 1.519455 GAGCGACCATCTCCCAACG 60.519 63.158 0.00 0.00 0.00 4.10
2168 2301 2.511600 GCGACCATCTCCCAACGG 60.512 66.667 0.00 0.00 0.00 4.44
2169 2302 3.014085 GCGACCATCTCCCAACGGA 62.014 63.158 0.00 0.00 36.45 4.69
2170 2303 1.823295 CGACCATCTCCCAACGGAT 59.177 57.895 0.00 0.00 37.60 4.18
2171 2304 1.037493 CGACCATCTCCCAACGGATA 58.963 55.000 0.00 0.00 37.60 2.59
2172 2305 1.000163 CGACCATCTCCCAACGGATAG 60.000 57.143 0.00 0.00 37.60 2.08
2173 2306 2.317040 GACCATCTCCCAACGGATAGA 58.683 52.381 0.00 0.00 37.60 1.98
2174 2307 2.900546 GACCATCTCCCAACGGATAGAT 59.099 50.000 0.00 0.00 37.60 1.98
2175 2308 2.900546 ACCATCTCCCAACGGATAGATC 59.099 50.000 0.00 0.00 37.60 2.75
2176 2309 2.234908 CCATCTCCCAACGGATAGATCC 59.765 54.545 0.00 0.00 43.65 3.36
2189 2322 5.948992 GGATAGATCCAGTAACCAAATGC 57.051 43.478 3.54 0.00 46.38 3.56
2190 2323 5.625150 GGATAGATCCAGTAACCAAATGCT 58.375 41.667 3.54 0.00 46.38 3.79
2191 2324 5.703130 GGATAGATCCAGTAACCAAATGCTC 59.297 44.000 3.54 0.00 46.38 4.26
2192 2325 3.891049 AGATCCAGTAACCAAATGCTCC 58.109 45.455 0.00 0.00 0.00 4.70
2193 2326 2.507407 TCCAGTAACCAAATGCTCCC 57.493 50.000 0.00 0.00 0.00 4.30
2194 2327 1.992557 TCCAGTAACCAAATGCTCCCT 59.007 47.619 0.00 0.00 0.00 4.20
2195 2328 2.094675 CCAGTAACCAAATGCTCCCTG 58.905 52.381 0.00 0.00 0.00 4.45
2196 2329 2.094675 CAGTAACCAAATGCTCCCTGG 58.905 52.381 0.00 0.00 36.24 4.45
2197 2330 0.817654 GTAACCAAATGCTCCCTGGC 59.182 55.000 0.00 0.00 33.19 4.85
2198 2331 0.324275 TAACCAAATGCTCCCTGGCC 60.324 55.000 0.00 0.00 33.19 5.36
2199 2332 2.097978 AACCAAATGCTCCCTGGCCT 62.098 55.000 3.32 0.00 33.19 5.19
2200 2333 1.755783 CCAAATGCTCCCTGGCCTC 60.756 63.158 3.32 0.00 0.00 4.70
2201 2334 1.305623 CAAATGCTCCCTGGCCTCT 59.694 57.895 3.32 0.00 0.00 3.69
2202 2335 0.548031 CAAATGCTCCCTGGCCTCTA 59.452 55.000 3.32 0.00 0.00 2.43
2203 2336 1.144503 CAAATGCTCCCTGGCCTCTAT 59.855 52.381 3.32 0.00 0.00 1.98
2204 2337 1.063183 AATGCTCCCTGGCCTCTATC 58.937 55.000 3.32 0.00 0.00 2.08
2205 2338 1.190833 ATGCTCCCTGGCCTCTATCG 61.191 60.000 3.32 0.00 0.00 2.92
2206 2339 2.578714 GCTCCCTGGCCTCTATCGG 61.579 68.421 3.32 0.00 0.00 4.18
2207 2340 1.153989 CTCCCTGGCCTCTATCGGA 59.846 63.158 3.32 0.00 0.00 4.55
2208 2341 0.897863 CTCCCTGGCCTCTATCGGAG 60.898 65.000 3.32 5.17 41.51 4.63
2209 2342 1.152440 CCCTGGCCTCTATCGGAGT 60.152 63.158 3.32 0.00 40.30 3.85
2210 2343 1.467678 CCCTGGCCTCTATCGGAGTG 61.468 65.000 3.32 0.00 40.30 3.51
2211 2344 0.468214 CCTGGCCTCTATCGGAGTGA 60.468 60.000 3.32 0.00 40.30 3.41
2212 2345 0.958091 CTGGCCTCTATCGGAGTGAG 59.042 60.000 3.32 3.85 40.30 3.51
2213 2346 0.259065 TGGCCTCTATCGGAGTGAGT 59.741 55.000 3.32 0.00 40.30 3.41
2214 2347 1.493446 TGGCCTCTATCGGAGTGAGTA 59.507 52.381 3.32 0.00 40.30 2.59
2215 2348 2.092049 TGGCCTCTATCGGAGTGAGTAA 60.092 50.000 3.32 0.00 40.30 2.24
2216 2349 2.293955 GGCCTCTATCGGAGTGAGTAAC 59.706 54.545 0.00 0.59 40.30 2.50
2217 2350 2.031857 GCCTCTATCGGAGTGAGTAACG 60.032 54.545 8.53 0.00 40.30 3.18
2218 2351 3.464907 CCTCTATCGGAGTGAGTAACGA 58.535 50.000 0.00 0.00 40.30 3.85
2219 2352 3.248125 CCTCTATCGGAGTGAGTAACGAC 59.752 52.174 0.00 0.00 40.30 4.34
2220 2353 3.201290 TCTATCGGAGTGAGTAACGACC 58.799 50.000 0.00 0.00 38.24 4.79
2221 2354 1.830279 ATCGGAGTGAGTAACGACCA 58.170 50.000 0.00 0.00 38.24 4.02
2222 2355 0.877071 TCGGAGTGAGTAACGACCAC 59.123 55.000 0.00 0.00 32.74 4.16
2223 2356 0.453950 CGGAGTGAGTAACGACCACG 60.454 60.000 0.00 0.00 45.75 4.94
2224 2357 0.877071 GGAGTGAGTAACGACCACGA 59.123 55.000 0.00 0.00 42.66 4.35
2225 2358 1.267806 GGAGTGAGTAACGACCACGAA 59.732 52.381 0.00 0.00 42.66 3.85
2226 2359 2.314122 GAGTGAGTAACGACCACGAAC 58.686 52.381 0.00 0.00 42.66 3.95
2227 2360 1.047739 GTGAGTAACGACCACGAACG 58.952 55.000 0.00 0.00 42.66 3.95
2228 2361 0.040157 TGAGTAACGACCACGAACGG 60.040 55.000 0.00 0.00 42.66 4.44
2229 2362 0.238289 GAGTAACGACCACGAACGGA 59.762 55.000 0.00 0.00 42.66 4.69
2230 2363 0.883833 AGTAACGACCACGAACGGAT 59.116 50.000 0.00 0.00 42.66 4.18
2231 2364 1.135575 AGTAACGACCACGAACGGATC 60.136 52.381 0.00 0.00 42.66 3.36
2232 2365 0.880441 TAACGACCACGAACGGATCA 59.120 50.000 0.00 0.00 42.66 2.92
2233 2366 0.388134 AACGACCACGAACGGATCAG 60.388 55.000 0.00 0.00 42.66 2.90
2234 2367 1.211969 CGACCACGAACGGATCAGT 59.788 57.895 0.00 0.00 42.66 3.41
2235 2368 1.071019 CGACCACGAACGGATCAGTG 61.071 60.000 0.00 0.00 42.66 3.66
2236 2369 1.352156 GACCACGAACGGATCAGTGC 61.352 60.000 0.00 0.00 33.84 4.40
2237 2370 2.100631 CCACGAACGGATCAGTGCC 61.101 63.158 0.00 0.00 33.84 5.01
2243 2376 2.808315 CGGATCAGTGCCGTAGCT 59.192 61.111 0.00 0.00 43.66 3.32
2244 2377 1.299468 CGGATCAGTGCCGTAGCTC 60.299 63.158 0.00 0.00 43.66 4.09
2245 2378 1.299468 GGATCAGTGCCGTAGCTCG 60.299 63.158 0.00 0.00 40.80 5.03
2258 2391 2.284417 CGTAGCTCGGAAAATAACCTGC 59.716 50.000 0.00 0.00 35.71 4.85
2259 2392 2.489938 AGCTCGGAAAATAACCTGCA 57.510 45.000 0.00 0.00 0.00 4.41
2260 2393 2.790433 AGCTCGGAAAATAACCTGCAA 58.210 42.857 0.00 0.00 0.00 4.08
2261 2394 2.749621 AGCTCGGAAAATAACCTGCAAG 59.250 45.455 0.00 0.00 0.00 4.01
2262 2395 2.747446 GCTCGGAAAATAACCTGCAAGA 59.253 45.455 0.00 0.00 34.07 3.02
2263 2396 3.190535 GCTCGGAAAATAACCTGCAAGAA 59.809 43.478 0.00 0.00 34.07 2.52
2264 2397 4.320935 GCTCGGAAAATAACCTGCAAGAAA 60.321 41.667 0.00 0.00 34.07 2.52
2265 2398 5.622233 GCTCGGAAAATAACCTGCAAGAAAT 60.622 40.000 0.00 0.00 34.07 2.17
2266 2399 5.708948 TCGGAAAATAACCTGCAAGAAATG 58.291 37.500 0.00 0.00 34.07 2.32
2267 2400 5.475220 TCGGAAAATAACCTGCAAGAAATGA 59.525 36.000 0.00 0.00 34.07 2.57
2268 2401 6.015856 TCGGAAAATAACCTGCAAGAAATGAA 60.016 34.615 0.00 0.00 34.07 2.57
2269 2402 6.813152 CGGAAAATAACCTGCAAGAAATGAAT 59.187 34.615 0.00 0.00 34.07 2.57
2270 2403 7.009540 CGGAAAATAACCTGCAAGAAATGAATC 59.990 37.037 0.00 0.00 34.07 2.52
2271 2404 7.278646 GGAAAATAACCTGCAAGAAATGAATCC 59.721 37.037 0.00 0.00 34.07 3.01
2272 2405 3.855689 AACCTGCAAGAAATGAATCCG 57.144 42.857 0.00 0.00 34.07 4.18
2273 2406 2.795329 ACCTGCAAGAAATGAATCCGT 58.205 42.857 0.00 0.00 34.07 4.69
2274 2407 2.489329 ACCTGCAAGAAATGAATCCGTG 59.511 45.455 0.00 0.00 34.07 4.94
2275 2408 2.749076 CCTGCAAGAAATGAATCCGTGA 59.251 45.455 0.00 0.00 34.07 4.35
2276 2409 3.379372 CCTGCAAGAAATGAATCCGTGAT 59.621 43.478 0.00 0.00 34.07 3.06
2277 2410 4.348656 CTGCAAGAAATGAATCCGTGATG 58.651 43.478 0.00 0.00 34.07 3.07
2278 2411 3.758023 TGCAAGAAATGAATCCGTGATGT 59.242 39.130 0.00 0.00 0.00 3.06
2279 2412 4.218200 TGCAAGAAATGAATCCGTGATGTT 59.782 37.500 0.00 0.00 0.00 2.71
2280 2413 4.795278 GCAAGAAATGAATCCGTGATGTTC 59.205 41.667 0.00 0.00 0.00 3.18
2281 2414 5.392380 GCAAGAAATGAATCCGTGATGTTCT 60.392 40.000 0.00 0.00 0.00 3.01
2282 2415 5.808042 AGAAATGAATCCGTGATGTTCTG 57.192 39.130 0.00 0.00 0.00 3.02
2283 2416 5.248640 AGAAATGAATCCGTGATGTTCTGT 58.751 37.500 0.00 0.00 0.00 3.41
2284 2417 5.707298 AGAAATGAATCCGTGATGTTCTGTT 59.293 36.000 0.00 0.00 0.00 3.16
2285 2418 6.878923 AGAAATGAATCCGTGATGTTCTGTTA 59.121 34.615 0.00 0.00 0.00 2.41
2286 2419 7.390440 AGAAATGAATCCGTGATGTTCTGTTAA 59.610 33.333 0.00 0.00 0.00 2.01
2287 2420 7.447374 AATGAATCCGTGATGTTCTGTTAAA 57.553 32.000 0.00 0.00 0.00 1.52
2288 2421 6.869315 TGAATCCGTGATGTTCTGTTAAAA 57.131 33.333 0.00 0.00 0.00 1.52
2289 2422 7.265647 TGAATCCGTGATGTTCTGTTAAAAA 57.734 32.000 0.00 0.00 0.00 1.94
2290 2423 7.136119 TGAATCCGTGATGTTCTGTTAAAAAC 58.864 34.615 0.00 0.00 0.00 2.43
2291 2424 5.427036 TCCGTGATGTTCTGTTAAAAACC 57.573 39.130 0.00 0.00 0.00 3.27
2292 2425 4.882427 TCCGTGATGTTCTGTTAAAAACCA 59.118 37.500 0.00 0.00 0.00 3.67
2293 2426 5.357314 TCCGTGATGTTCTGTTAAAAACCAA 59.643 36.000 0.00 0.00 0.00 3.67
2294 2427 6.037098 CCGTGATGTTCTGTTAAAAACCAAA 58.963 36.000 0.00 0.00 0.00 3.28
2295 2428 6.699642 CCGTGATGTTCTGTTAAAAACCAAAT 59.300 34.615 0.00 0.00 0.00 2.32
2296 2429 7.096230 CCGTGATGTTCTGTTAAAAACCAAATC 60.096 37.037 0.00 0.00 0.00 2.17
2297 2430 7.433719 CGTGATGTTCTGTTAAAAACCAAATCA 59.566 33.333 0.00 0.00 0.00 2.57
2298 2431 9.260002 GTGATGTTCTGTTAAAAACCAAATCAT 57.740 29.630 0.00 0.00 0.00 2.45
2299 2432 9.829507 TGATGTTCTGTTAAAAACCAAATCATT 57.170 25.926 0.00 0.00 0.00 2.57
2302 2435 9.883142 TGTTCTGTTAAAAACCAAATCATTTCT 57.117 25.926 0.00 0.00 0.00 2.52
2304 2437 8.364129 TCTGTTAAAAACCAAATCATTTCTGC 57.636 30.769 0.00 0.00 0.00 4.26
2305 2438 7.984050 TCTGTTAAAAACCAAATCATTTCTGCA 59.016 29.630 0.00 0.00 0.00 4.41
2306 2439 8.498054 TGTTAAAAACCAAATCATTTCTGCAA 57.502 26.923 0.00 0.00 0.00 4.08
2307 2440 9.118300 TGTTAAAAACCAAATCATTTCTGCAAT 57.882 25.926 0.00 0.00 0.00 3.56
2308 2441 9.949174 GTTAAAAACCAAATCATTTCTGCAATT 57.051 25.926 0.00 0.00 0.00 2.32
2310 2443 6.806388 AAACCAAATCATTTCTGCAATTCC 57.194 33.333 0.00 0.00 0.00 3.01
2311 2444 5.486735 ACCAAATCATTTCTGCAATTCCA 57.513 34.783 0.00 0.00 0.00 3.53
2312 2445 5.484715 ACCAAATCATTTCTGCAATTCCAG 58.515 37.500 0.00 0.00 0.00 3.86
2313 2446 5.246656 ACCAAATCATTTCTGCAATTCCAGA 59.753 36.000 0.00 0.00 39.94 3.86
2314 2447 6.070424 ACCAAATCATTTCTGCAATTCCAGAT 60.070 34.615 0.00 0.00 41.18 2.90
2315 2448 7.124599 ACCAAATCATTTCTGCAATTCCAGATA 59.875 33.333 0.00 0.00 41.18 1.98
2316 2449 7.652105 CCAAATCATTTCTGCAATTCCAGATAG 59.348 37.037 0.00 0.00 41.18 2.08
2317 2450 7.893124 AATCATTTCTGCAATTCCAGATAGT 57.107 32.000 0.00 0.00 41.18 2.12
2318 2451 6.932356 TCATTTCTGCAATTCCAGATAGTC 57.068 37.500 0.00 0.00 41.18 2.59
2319 2452 5.824624 TCATTTCTGCAATTCCAGATAGTCC 59.175 40.000 0.00 0.00 41.18 3.85
2320 2453 4.842531 TTCTGCAATTCCAGATAGTCCA 57.157 40.909 0.00 0.00 41.18 4.02
2321 2454 5.378230 TTCTGCAATTCCAGATAGTCCAT 57.622 39.130 0.00 0.00 41.18 3.41
2322 2455 6.499106 TTCTGCAATTCCAGATAGTCCATA 57.501 37.500 0.00 0.00 41.18 2.74
2323 2456 6.499106 TCTGCAATTCCAGATAGTCCATAA 57.501 37.500 0.00 0.00 36.96 1.90
2324 2457 6.291377 TCTGCAATTCCAGATAGTCCATAAC 58.709 40.000 0.00 0.00 36.96 1.89
2325 2458 6.000246 TGCAATTCCAGATAGTCCATAACA 58.000 37.500 0.00 0.00 0.00 2.41
2326 2459 6.422333 TGCAATTCCAGATAGTCCATAACAA 58.578 36.000 0.00 0.00 0.00 2.83
2327 2460 6.889177 TGCAATTCCAGATAGTCCATAACAAA 59.111 34.615 0.00 0.00 0.00 2.83
2328 2461 7.067372 TGCAATTCCAGATAGTCCATAACAAAG 59.933 37.037 0.00 0.00 0.00 2.77
2329 2462 7.420800 CAATTCCAGATAGTCCATAACAAAGC 58.579 38.462 0.00 0.00 0.00 3.51
2330 2463 4.693283 TCCAGATAGTCCATAACAAAGCG 58.307 43.478 0.00 0.00 0.00 4.68
2331 2464 3.248602 CCAGATAGTCCATAACAAAGCGC 59.751 47.826 0.00 0.00 0.00 5.92
2332 2465 3.871006 CAGATAGTCCATAACAAAGCGCA 59.129 43.478 11.47 0.00 0.00 6.09
2333 2466 4.332543 CAGATAGTCCATAACAAAGCGCAA 59.667 41.667 11.47 0.00 0.00 4.85
2334 2467 4.941263 AGATAGTCCATAACAAAGCGCAAA 59.059 37.500 11.47 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.284550 TTGGGCCCCAGTGAGCAC 62.285 66.667 22.27 4.20 33.81 4.40
19 20 5.256806 AGTAATCATAATAGTTGGGCCCC 57.743 43.478 22.27 4.15 0.00 5.80
23 24 9.273016 CAACCAGTAGTAATCATAATAGTTGGG 57.727 37.037 0.00 0.00 28.86 4.12
37 38 2.692024 TGACACCCCAACCAGTAGTAA 58.308 47.619 0.00 0.00 0.00 2.24
41 42 2.038863 AGATGACACCCCAACCAGTA 57.961 50.000 0.00 0.00 0.00 2.74
53 54 2.125552 CGGCGCCAGAAGATGACA 60.126 61.111 28.98 0.00 0.00 3.58
83 84 6.706055 TTAAAAATGAAAACGTGTGCACAA 57.294 29.167 23.59 3.99 0.00 3.33
109 110 1.076995 GGCGGGGGCTTTGTCTATT 60.077 57.895 0.00 0.00 0.00 1.73
123 124 1.337447 TGTTTTTCTAGACGGAGGCGG 60.337 52.381 0.00 0.00 0.00 6.13
210 221 1.026718 GGCTACGCAATGTGAGGCTT 61.027 55.000 0.00 0.00 0.00 4.35
214 225 0.811616 GGAGGGCTACGCAATGTGAG 60.812 60.000 0.00 0.00 0.00 3.51
219 230 1.128200 TACATGGAGGGCTACGCAAT 58.872 50.000 0.00 0.00 0.00 3.56
284 333 4.317488 GCCATGATGAAAAAGCTTTTGGA 58.683 39.130 24.50 14.36 0.00 3.53
300 349 1.971167 GCGAACTGGTTGGCCATGA 60.971 57.895 6.09 0.00 45.05 3.07
310 359 3.803082 CCATGTGGCGCGAACTGG 61.803 66.667 12.10 12.51 0.00 4.00
389 438 1.110442 CCACCACTGAAAACAGCCAA 58.890 50.000 0.00 0.00 0.00 4.52
402 451 3.305516 CCCCAAGCTTGCCACCAC 61.306 66.667 21.43 0.00 0.00 4.16
470 519 4.377897 CTCTCCTACCAACGAAAACAAGT 58.622 43.478 0.00 0.00 0.00 3.16
539 588 1.508632 GCTACCGTCAACAAAGAGCA 58.491 50.000 0.00 0.00 0.00 4.26
571 620 1.737696 CGTTGTATCACCGCTGGCTTA 60.738 52.381 0.00 0.00 0.00 3.09
618 669 4.759693 CAGCAACAACAAGTAGTAATCCCA 59.240 41.667 0.00 0.00 0.00 4.37
670 721 5.298777 GCATAGCTTTGGAATGATCACTCTT 59.701 40.000 3.89 0.00 0.00 2.85
706 757 2.029728 CGAGGAAGTAGGTACGTGTACG 59.970 54.545 0.00 2.43 46.33 3.67
707 758 2.352960 CCGAGGAAGTAGGTACGTGTAC 59.647 54.545 0.00 1.49 35.40 2.90
708 759 2.027192 ACCGAGGAAGTAGGTACGTGTA 60.027 50.000 0.00 0.00 36.34 2.90
709 760 1.271597 ACCGAGGAAGTAGGTACGTGT 60.272 52.381 0.00 0.00 36.34 4.49
710 761 1.399791 GACCGAGGAAGTAGGTACGTG 59.600 57.143 0.00 0.00 38.57 4.49
711 762 1.280421 AGACCGAGGAAGTAGGTACGT 59.720 52.381 0.00 0.00 38.57 3.57
712 763 1.939255 GAGACCGAGGAAGTAGGTACG 59.061 57.143 0.00 0.00 38.57 3.67
752 803 8.491152 GTGACAGCTAACACATAATATAGCTTG 58.509 37.037 14.77 3.42 46.62 4.01
756 807 6.183359 CGCGTGACAGCTAACACATAATATAG 60.183 42.308 18.13 5.01 36.91 1.31
862 913 6.483307 ACTTATGTATGTATGAACGCATGCTT 59.517 34.615 17.13 2.67 37.90 3.91
897 948 4.649218 AGTTTAATTTCCAGCAACCAGTGT 59.351 37.500 0.00 0.00 0.00 3.55
1048 1118 3.561213 CAGTGCAGCGGCGATGAG 61.561 66.667 30.95 11.05 45.35 2.90
1100 1170 5.178252 CAGTGAAGATATGGCGAATTACCTG 59.822 44.000 0.00 0.00 0.00 4.00
1109 1180 3.801050 CAGAGTTCAGTGAAGATATGGCG 59.199 47.826 5.62 0.00 0.00 5.69
1110 1181 4.764172 ACAGAGTTCAGTGAAGATATGGC 58.236 43.478 5.62 0.00 0.00 4.40
1161 1263 1.176527 CCACCTGCACACAAATAGGG 58.823 55.000 0.00 0.00 34.60 3.53
1440 1566 1.402259 CTAGTACCAGTGTCGCCTCAG 59.598 57.143 0.00 0.00 0.00 3.35
1667 1795 3.751479 TGATTGACCAGTATATGCGCT 57.249 42.857 9.73 0.00 0.00 5.92
1732 1861 4.046286 TGACCCTTACCCTTTACGTCTA 57.954 45.455 0.00 0.00 0.00 2.59
1742 1871 4.099881 TGTTCGTATGTATGACCCTTACCC 59.900 45.833 0.00 0.00 0.00 3.69
1762 1891 8.198109 GTGTGTTCATAGAGATAGGTGTATGTT 58.802 37.037 0.00 0.00 0.00 2.71
1764 1893 6.858478 CGTGTGTTCATAGAGATAGGTGTATG 59.142 42.308 0.00 0.00 0.00 2.39
1771 1902 2.721603 GCGCGTGTGTTCATAGAGATAG 59.278 50.000 8.43 0.00 0.00 2.08
1772 1903 2.098443 TGCGCGTGTGTTCATAGAGATA 59.902 45.455 8.43 0.00 0.00 1.98
1777 1908 0.179250 GTGTGCGCGTGTGTTCATAG 60.179 55.000 8.43 0.00 0.00 2.23
1791 1922 2.103094 TGCTCATAGGGATAGTGTGTGC 59.897 50.000 0.00 0.00 0.00 4.57
1814 1947 7.517614 TTTCACAACAACCTATAAGCATGAA 57.482 32.000 0.00 0.00 0.00 2.57
1823 1956 6.259829 GCAAAATGGTTTTCACAACAACCTAT 59.740 34.615 2.91 0.00 42.72 2.57
1895 2028 4.804420 ATGCAGAGGCCGGGGAGA 62.804 66.667 2.18 0.00 40.13 3.71
1896 2029 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
1898 2031 3.643595 TTTGATGCAGAGGCCGGGG 62.644 63.158 2.18 0.00 40.13 5.73
1899 2032 1.678635 TTTTGATGCAGAGGCCGGG 60.679 57.895 2.18 0.00 40.13 5.73
1900 2033 1.508088 GTTTTGATGCAGAGGCCGG 59.492 57.895 0.00 0.00 40.13 6.13
1901 2034 1.135315 CGTTTTGATGCAGAGGCCG 59.865 57.895 0.00 0.00 40.13 6.13
1902 2035 1.098050 ATCGTTTTGATGCAGAGGCC 58.902 50.000 0.00 0.00 40.13 5.19
1911 2044 1.333619 GGCCGTATGCATCGTTTTGAT 59.666 47.619 0.19 0.00 43.89 2.57
1912 2045 0.730265 GGCCGTATGCATCGTTTTGA 59.270 50.000 0.19 0.00 43.89 2.69
1913 2046 0.449786 TGGCCGTATGCATCGTTTTG 59.550 50.000 0.19 0.00 43.89 2.44
1914 2047 1.333619 GATGGCCGTATGCATCGTTTT 59.666 47.619 0.19 0.00 43.89 2.43
1915 2048 0.944386 GATGGCCGTATGCATCGTTT 59.056 50.000 0.19 0.00 43.89 3.60
1916 2049 0.106708 AGATGGCCGTATGCATCGTT 59.893 50.000 0.19 0.00 43.89 3.85
1917 2050 0.106708 AAGATGGCCGTATGCATCGT 59.893 50.000 0.19 0.00 43.89 3.73
1918 2051 2.078849 TAAGATGGCCGTATGCATCG 57.921 50.000 0.19 7.03 43.89 3.84
1919 2052 6.683974 ATTAATAAGATGGCCGTATGCATC 57.316 37.500 0.19 0.00 43.89 3.91
1920 2053 8.574251 TTTATTAATAAGATGGCCGTATGCAT 57.426 30.769 3.79 3.79 43.89 3.96
1921 2054 7.987750 TTTATTAATAAGATGGCCGTATGCA 57.012 32.000 0.00 0.00 43.89 3.96
1952 2085 2.093764 TGGAACCTTGTTGGCACTTTTG 60.094 45.455 0.00 0.00 40.22 2.44
1953 2086 2.093711 GTGGAACCTTGTTGGCACTTTT 60.094 45.455 0.00 0.00 40.22 2.27
1954 2087 1.480545 GTGGAACCTTGTTGGCACTTT 59.519 47.619 0.00 0.00 40.22 2.66
1955 2088 1.111277 GTGGAACCTTGTTGGCACTT 58.889 50.000 0.00 0.00 40.22 3.16
1956 2089 0.033601 TGTGGAACCTTGTTGGCACT 60.034 50.000 0.00 0.00 40.22 4.40
1957 2090 0.820871 TTGTGGAACCTTGTTGGCAC 59.179 50.000 0.00 0.00 40.22 5.01
1958 2091 1.686052 GATTGTGGAACCTTGTTGGCA 59.314 47.619 0.00 0.00 40.22 4.92
1959 2092 1.963515 AGATTGTGGAACCTTGTTGGC 59.036 47.619 0.00 0.00 40.22 4.52
1960 2093 2.558359 GGAGATTGTGGAACCTTGTTGG 59.442 50.000 0.00 0.00 42.93 3.77
1961 2094 3.221771 TGGAGATTGTGGAACCTTGTTG 58.778 45.455 0.00 0.00 34.36 3.33
1962 2095 3.490348 CTGGAGATTGTGGAACCTTGTT 58.510 45.455 0.00 0.00 34.36 2.83
1963 2096 2.224867 CCTGGAGATTGTGGAACCTTGT 60.225 50.000 0.00 0.00 34.36 3.16
1964 2097 2.224867 ACCTGGAGATTGTGGAACCTTG 60.225 50.000 0.00 0.00 34.36 3.61
1965 2098 2.065799 ACCTGGAGATTGTGGAACCTT 58.934 47.619 0.00 0.00 34.36 3.50
1966 2099 1.747444 ACCTGGAGATTGTGGAACCT 58.253 50.000 0.00 0.00 34.36 3.50
1967 2100 3.713826 TTACCTGGAGATTGTGGAACC 57.286 47.619 0.00 0.00 34.36 3.62
1968 2101 4.394729 TGTTTACCTGGAGATTGTGGAAC 58.605 43.478 0.00 0.00 37.35 3.62
1969 2102 4.715534 TGTTTACCTGGAGATTGTGGAA 57.284 40.909 0.00 0.00 0.00 3.53
1970 2103 4.715534 TTGTTTACCTGGAGATTGTGGA 57.284 40.909 0.00 0.00 0.00 4.02
1971 2104 5.278957 CCTTTTGTTTACCTGGAGATTGTGG 60.279 44.000 0.00 0.00 0.00 4.17
1972 2105 5.534654 TCCTTTTGTTTACCTGGAGATTGTG 59.465 40.000 0.00 0.00 0.00 3.33
1973 2106 5.701224 TCCTTTTGTTTACCTGGAGATTGT 58.299 37.500 0.00 0.00 0.00 2.71
1974 2107 6.840780 ATCCTTTTGTTTACCTGGAGATTG 57.159 37.500 0.00 0.00 0.00 2.67
1975 2108 8.950007 TTTATCCTTTTGTTTACCTGGAGATT 57.050 30.769 0.00 0.00 0.00 2.40
1976 2109 8.950007 TTTTATCCTTTTGTTTACCTGGAGAT 57.050 30.769 0.00 0.00 0.00 2.75
1977 2110 8.770010 TTTTTATCCTTTTGTTTACCTGGAGA 57.230 30.769 0.00 0.00 0.00 3.71
1978 2111 8.856103 TCTTTTTATCCTTTTGTTTACCTGGAG 58.144 33.333 0.00 0.00 0.00 3.86
1979 2112 8.770010 TCTTTTTATCCTTTTGTTTACCTGGA 57.230 30.769 0.00 0.00 0.00 3.86
1980 2113 9.825109 TTTCTTTTTATCCTTTTGTTTACCTGG 57.175 29.630 0.00 0.00 0.00 4.45
1986 2119 8.344831 GCTGCATTTCTTTTTATCCTTTTGTTT 58.655 29.630 0.00 0.00 0.00 2.83
1987 2120 7.716560 AGCTGCATTTCTTTTTATCCTTTTGTT 59.283 29.630 1.02 0.00 0.00 2.83
1988 2121 7.219322 AGCTGCATTTCTTTTTATCCTTTTGT 58.781 30.769 1.02 0.00 0.00 2.83
1989 2122 7.385752 TGAGCTGCATTTCTTTTTATCCTTTTG 59.614 33.333 1.02 0.00 0.00 2.44
1990 2123 7.386025 GTGAGCTGCATTTCTTTTTATCCTTTT 59.614 33.333 1.02 0.00 0.00 2.27
1991 2124 6.870439 GTGAGCTGCATTTCTTTTTATCCTTT 59.130 34.615 1.02 0.00 0.00 3.11
1992 2125 6.015180 TGTGAGCTGCATTTCTTTTTATCCTT 60.015 34.615 1.02 0.00 0.00 3.36
1993 2126 5.477984 TGTGAGCTGCATTTCTTTTTATCCT 59.522 36.000 1.02 0.00 0.00 3.24
1994 2127 5.574443 GTGTGAGCTGCATTTCTTTTTATCC 59.426 40.000 1.02 0.00 0.00 2.59
1995 2128 6.151691 TGTGTGAGCTGCATTTCTTTTTATC 58.848 36.000 1.02 0.00 0.00 1.75
1996 2129 6.016024 TCTGTGTGAGCTGCATTTCTTTTTAT 60.016 34.615 1.02 0.00 0.00 1.40
1997 2130 5.299028 TCTGTGTGAGCTGCATTTCTTTTTA 59.701 36.000 1.02 0.00 0.00 1.52
1998 2131 4.098349 TCTGTGTGAGCTGCATTTCTTTTT 59.902 37.500 1.02 0.00 0.00 1.94
1999 2132 3.633525 TCTGTGTGAGCTGCATTTCTTTT 59.366 39.130 1.02 0.00 0.00 2.27
2000 2133 3.216800 TCTGTGTGAGCTGCATTTCTTT 58.783 40.909 1.02 0.00 0.00 2.52
2001 2134 2.812591 CTCTGTGTGAGCTGCATTTCTT 59.187 45.455 1.02 0.00 35.84 2.52
2002 2135 2.424557 CTCTGTGTGAGCTGCATTTCT 58.575 47.619 1.02 0.00 35.84 2.52
2003 2136 2.896243 CTCTGTGTGAGCTGCATTTC 57.104 50.000 1.02 0.00 35.84 2.17
2012 2145 1.135546 CCGTCTGTAGCTCTGTGTGAG 60.136 57.143 0.00 0.00 45.33 3.51
2013 2146 0.881796 CCGTCTGTAGCTCTGTGTGA 59.118 55.000 0.00 0.00 0.00 3.58
2014 2147 0.734253 GCCGTCTGTAGCTCTGTGTG 60.734 60.000 0.00 0.00 0.00 3.82
2015 2148 0.896019 AGCCGTCTGTAGCTCTGTGT 60.896 55.000 0.00 0.00 32.71 3.72
2016 2149 1.064803 CTAGCCGTCTGTAGCTCTGTG 59.935 57.143 0.00 0.00 40.56 3.66
2017 2150 1.065345 TCTAGCCGTCTGTAGCTCTGT 60.065 52.381 0.00 0.00 40.56 3.41
2018 2151 1.669604 TCTAGCCGTCTGTAGCTCTG 58.330 55.000 0.00 0.00 40.56 3.35
2019 2152 2.649531 ATCTAGCCGTCTGTAGCTCT 57.350 50.000 0.00 0.00 40.56 4.09
2020 2153 4.936411 TGTATATCTAGCCGTCTGTAGCTC 59.064 45.833 0.00 0.00 40.56 4.09
2021 2154 4.907809 TGTATATCTAGCCGTCTGTAGCT 58.092 43.478 0.00 0.00 43.20 3.32
2022 2155 5.624344 TTGTATATCTAGCCGTCTGTAGC 57.376 43.478 0.00 0.00 0.00 3.58
2023 2156 7.204496 AGTTTGTATATCTAGCCGTCTGTAG 57.796 40.000 0.00 0.00 0.00 2.74
2024 2157 7.094890 GCTAGTTTGTATATCTAGCCGTCTGTA 60.095 40.741 10.99 0.00 46.04 2.74
2025 2158 6.294065 GCTAGTTTGTATATCTAGCCGTCTGT 60.294 42.308 10.99 0.00 46.04 3.41
2026 2159 6.087522 GCTAGTTTGTATATCTAGCCGTCTG 58.912 44.000 10.99 0.00 46.04 3.51
2027 2160 6.256912 GCTAGTTTGTATATCTAGCCGTCT 57.743 41.667 10.99 0.00 46.04 4.18
2063 2196 2.033448 TTAGCCAGCCGGTTGTGG 59.967 61.111 17.69 15.43 36.85 4.17
2064 2197 1.169661 TTGTTAGCCAGCCGGTTGTG 61.170 55.000 17.69 9.73 33.28 3.33
2065 2198 0.251165 ATTGTTAGCCAGCCGGTTGT 60.251 50.000 17.69 1.85 33.28 3.32
2066 2199 1.670811 CTATTGTTAGCCAGCCGGTTG 59.329 52.381 11.98 11.98 33.28 3.77
2067 2200 1.557832 TCTATTGTTAGCCAGCCGGTT 59.442 47.619 1.90 0.00 33.28 4.44
2068 2201 1.200519 TCTATTGTTAGCCAGCCGGT 58.799 50.000 1.90 0.00 33.28 5.28
2069 2202 2.550830 ATCTATTGTTAGCCAGCCGG 57.449 50.000 0.00 0.00 0.00 6.13
2070 2203 3.589988 CCTATCTATTGTTAGCCAGCCG 58.410 50.000 0.00 0.00 0.00 5.52
2071 2204 3.583086 TCCCTATCTATTGTTAGCCAGCC 59.417 47.826 0.00 0.00 0.00 4.85
2072 2205 4.891992 TCCCTATCTATTGTTAGCCAGC 57.108 45.455 0.00 0.00 0.00 4.85
2073 2206 6.831976 AGTTTCCCTATCTATTGTTAGCCAG 58.168 40.000 0.00 0.00 0.00 4.85
2074 2207 6.824958 AGTTTCCCTATCTATTGTTAGCCA 57.175 37.500 0.00 0.00 0.00 4.75
2075 2208 9.794719 AATTAGTTTCCCTATCTATTGTTAGCC 57.205 33.333 0.00 0.00 0.00 3.93
2078 2211 9.569122 GGCAATTAGTTTCCCTATCTATTGTTA 57.431 33.333 0.00 0.00 0.00 2.41
2079 2212 8.282256 AGGCAATTAGTTTCCCTATCTATTGTT 58.718 33.333 0.00 0.00 0.00 2.83
2080 2213 7.816411 AGGCAATTAGTTTCCCTATCTATTGT 58.184 34.615 0.00 0.00 0.00 2.71
2081 2214 9.965902 ATAGGCAATTAGTTTCCCTATCTATTG 57.034 33.333 0.00 0.00 34.62 1.90
2087 2220 8.701643 ATAGGATAGGCAATTAGTTTCCCTAT 57.298 34.615 6.64 6.64 40.58 2.57
2088 2221 8.520119 AATAGGATAGGCAATTAGTTTCCCTA 57.480 34.615 0.00 0.00 33.10 3.53
2089 2222 7.408013 AATAGGATAGGCAATTAGTTTCCCT 57.592 36.000 0.00 0.00 0.00 4.20
2090 2223 8.161425 TGTAATAGGATAGGCAATTAGTTTCCC 58.839 37.037 0.00 0.00 0.00 3.97
2091 2224 9.740710 ATGTAATAGGATAGGCAATTAGTTTCC 57.259 33.333 0.00 0.00 0.00 3.13
2094 2227 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
2095 2228 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
2096 2229 7.492669 CGGTCATGTAATAGGATAGGCAATTAG 59.507 40.741 0.00 0.00 0.00 1.73
2097 2230 7.327975 CGGTCATGTAATAGGATAGGCAATTA 58.672 38.462 0.00 0.00 0.00 1.40
2098 2231 6.173339 CGGTCATGTAATAGGATAGGCAATT 58.827 40.000 0.00 0.00 0.00 2.32
2099 2232 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
2100 2233 4.562757 GCGGTCATGTAATAGGATAGGCAA 60.563 45.833 0.00 0.00 0.00 4.52
2101 2234 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
2102 2235 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
2103 2236 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
2104 2237 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
2105 2238 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
2106 2239 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
2107 2240 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
2108 2241 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
2109 2242 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
2110 2243 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
2111 2244 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
2112 2245 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
2113 2246 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
2114 2247 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
2115 2248 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
2116 2249 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
2117 2250 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
2118 2251 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
2119 2252 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
2120 2253 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
2121 2254 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
2122 2255 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
2123 2256 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
2124 2257 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
2125 2258 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
2126 2259 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
2127 2260 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
2128 2261 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
2129 2262 2.502538 TCGGGATATCTTCAACCGGTTT 59.497 45.455 19.55 5.23 44.36 3.27
2130 2263 2.102588 CTCGGGATATCTTCAACCGGTT 59.897 50.000 15.86 15.86 44.36 4.44
2131 2264 1.687123 CTCGGGATATCTTCAACCGGT 59.313 52.381 0.00 0.00 44.36 5.28
2132 2265 1.605712 GCTCGGGATATCTTCAACCGG 60.606 57.143 14.77 0.00 44.36 5.28
2133 2266 1.784525 GCTCGGGATATCTTCAACCG 58.215 55.000 10.16 10.16 45.52 4.44
2134 2267 1.340248 TCGCTCGGGATATCTTCAACC 59.660 52.381 2.05 0.00 0.00 3.77
2135 2268 2.395654 GTCGCTCGGGATATCTTCAAC 58.604 52.381 2.05 0.00 0.00 3.18
2136 2269 1.340248 GGTCGCTCGGGATATCTTCAA 59.660 52.381 2.05 0.00 0.00 2.69
2137 2270 0.959553 GGTCGCTCGGGATATCTTCA 59.040 55.000 2.05 0.00 0.00 3.02
2138 2271 0.959553 TGGTCGCTCGGGATATCTTC 59.040 55.000 2.05 0.00 0.00 2.87
2139 2272 1.546476 GATGGTCGCTCGGGATATCTT 59.454 52.381 2.05 0.00 0.00 2.40
2140 2273 1.178276 GATGGTCGCTCGGGATATCT 58.822 55.000 2.05 0.00 0.00 1.98
2141 2274 1.133407 GAGATGGTCGCTCGGGATATC 59.867 57.143 0.00 0.00 0.00 1.63
2142 2275 1.178276 GAGATGGTCGCTCGGGATAT 58.822 55.000 0.00 0.00 0.00 1.63
2143 2276 0.894184 GGAGATGGTCGCTCGGGATA 60.894 60.000 0.00 0.00 33.19 2.59
2144 2277 2.203771 GGAGATGGTCGCTCGGGAT 61.204 63.158 0.00 0.00 33.19 3.85
2145 2278 2.833582 GGAGATGGTCGCTCGGGA 60.834 66.667 0.00 0.00 33.19 5.14
2146 2279 3.917760 GGGAGATGGTCGCTCGGG 61.918 72.222 0.00 0.00 35.21 5.14
2147 2280 2.721167 TTGGGAGATGGTCGCTCGG 61.721 63.158 0.00 0.00 38.94 4.63
2148 2281 1.519455 GTTGGGAGATGGTCGCTCG 60.519 63.158 0.00 0.00 38.94 5.03
2149 2282 1.519455 CGTTGGGAGATGGTCGCTC 60.519 63.158 0.00 0.00 38.94 5.03
2150 2283 2.579201 CGTTGGGAGATGGTCGCT 59.421 61.111 0.00 0.00 38.94 4.93
2151 2284 2.511600 CCGTTGGGAGATGGTCGC 60.512 66.667 0.00 0.00 38.63 5.19
2152 2285 3.294750 TCCGTTGGGAGATGGTCG 58.705 61.111 0.00 0.00 37.43 4.79
2168 2301 5.703130 GGAGCATTTGGTTACTGGATCTATC 59.297 44.000 0.00 0.00 0.00 2.08
2169 2302 5.456763 GGGAGCATTTGGTTACTGGATCTAT 60.457 44.000 0.00 0.00 0.00 1.98
2170 2303 4.141482 GGGAGCATTTGGTTACTGGATCTA 60.141 45.833 0.00 0.00 0.00 1.98
2171 2304 3.372025 GGGAGCATTTGGTTACTGGATCT 60.372 47.826 0.00 0.00 0.00 2.75
2172 2305 2.952310 GGGAGCATTTGGTTACTGGATC 59.048 50.000 0.00 0.00 0.00 3.36
2173 2306 2.582636 AGGGAGCATTTGGTTACTGGAT 59.417 45.455 0.00 0.00 0.00 3.41
2174 2307 1.992557 AGGGAGCATTTGGTTACTGGA 59.007 47.619 0.00 0.00 0.00 3.86
2175 2308 2.094675 CAGGGAGCATTTGGTTACTGG 58.905 52.381 6.70 0.00 0.00 4.00
2176 2309 2.094675 CCAGGGAGCATTTGGTTACTG 58.905 52.381 7.32 7.32 32.88 2.74
2177 2310 1.616994 GCCAGGGAGCATTTGGTTACT 60.617 52.381 0.00 0.00 34.43 2.24
2178 2311 0.817654 GCCAGGGAGCATTTGGTTAC 59.182 55.000 0.00 0.00 34.43 2.50
2179 2312 0.324275 GGCCAGGGAGCATTTGGTTA 60.324 55.000 0.00 0.00 34.43 2.85
2180 2313 1.610379 GGCCAGGGAGCATTTGGTT 60.610 57.895 0.00 0.00 34.43 3.67
2181 2314 2.037847 GGCCAGGGAGCATTTGGT 59.962 61.111 0.00 0.00 34.43 3.67
2182 2315 1.755783 GAGGCCAGGGAGCATTTGG 60.756 63.158 5.01 0.00 35.06 3.28
2183 2316 0.548031 TAGAGGCCAGGGAGCATTTG 59.452 55.000 5.01 0.00 0.00 2.32
2184 2317 1.423161 GATAGAGGCCAGGGAGCATTT 59.577 52.381 5.01 0.00 0.00 2.32
2185 2318 1.063183 GATAGAGGCCAGGGAGCATT 58.937 55.000 5.01 0.00 0.00 3.56
2186 2319 1.190833 CGATAGAGGCCAGGGAGCAT 61.191 60.000 5.01 0.00 39.76 3.79
2187 2320 1.834378 CGATAGAGGCCAGGGAGCA 60.834 63.158 5.01 0.00 39.76 4.26
2188 2321 2.578714 CCGATAGAGGCCAGGGAGC 61.579 68.421 5.01 0.00 39.76 4.70
2189 2322 0.897863 CTCCGATAGAGGCCAGGGAG 60.898 65.000 5.01 7.43 39.13 4.30
2190 2323 1.153989 CTCCGATAGAGGCCAGGGA 59.846 63.158 5.01 0.60 39.13 4.20
2191 2324 3.784573 CTCCGATAGAGGCCAGGG 58.215 66.667 5.01 0.00 39.13 4.45
2199 2332 3.201290 GGTCGTTACTCACTCCGATAGA 58.799 50.000 0.00 0.00 39.76 1.98
2200 2333 2.941064 TGGTCGTTACTCACTCCGATAG 59.059 50.000 0.00 0.00 0.00 2.08
2201 2334 2.679837 GTGGTCGTTACTCACTCCGATA 59.320 50.000 0.00 0.00 0.00 2.92
2202 2335 1.471684 GTGGTCGTTACTCACTCCGAT 59.528 52.381 0.00 0.00 0.00 4.18
2203 2336 0.877071 GTGGTCGTTACTCACTCCGA 59.123 55.000 0.00 0.00 0.00 4.55
2204 2337 0.453950 CGTGGTCGTTACTCACTCCG 60.454 60.000 0.00 0.00 0.00 4.63
2205 2338 0.877071 TCGTGGTCGTTACTCACTCC 59.123 55.000 0.00 0.00 38.33 3.85
2206 2339 2.314122 GTTCGTGGTCGTTACTCACTC 58.686 52.381 0.00 0.00 38.33 3.51
2207 2340 1.334419 CGTTCGTGGTCGTTACTCACT 60.334 52.381 0.00 0.00 38.33 3.41
2208 2341 1.047739 CGTTCGTGGTCGTTACTCAC 58.952 55.000 0.00 0.00 38.33 3.51
2209 2342 0.040157 CCGTTCGTGGTCGTTACTCA 60.040 55.000 0.00 0.00 38.33 3.41
2210 2343 0.238289 TCCGTTCGTGGTCGTTACTC 59.762 55.000 0.00 0.00 38.33 2.59
2211 2344 0.883833 ATCCGTTCGTGGTCGTTACT 59.116 50.000 0.00 0.00 38.33 2.24
2212 2345 1.262882 GATCCGTTCGTGGTCGTTAC 58.737 55.000 0.00 0.00 38.33 2.50
2213 2346 0.880441 TGATCCGTTCGTGGTCGTTA 59.120 50.000 0.00 0.00 38.33 3.18
2214 2347 0.388134 CTGATCCGTTCGTGGTCGTT 60.388 55.000 0.00 0.00 38.33 3.85
2215 2348 1.211969 CTGATCCGTTCGTGGTCGT 59.788 57.895 0.00 0.00 38.33 4.34
2216 2349 1.071019 CACTGATCCGTTCGTGGTCG 61.071 60.000 0.00 0.00 38.55 4.79
2217 2350 1.352156 GCACTGATCCGTTCGTGGTC 61.352 60.000 0.00 0.00 32.81 4.02
2218 2351 1.374252 GCACTGATCCGTTCGTGGT 60.374 57.895 0.00 0.00 32.81 4.16
2219 2352 2.100631 GGCACTGATCCGTTCGTGG 61.101 63.158 0.00 0.00 32.81 4.94
2220 2353 2.444624 CGGCACTGATCCGTTCGTG 61.445 63.158 0.00 0.00 41.85 4.35
2221 2354 2.126071 CGGCACTGATCCGTTCGT 60.126 61.111 0.00 0.00 41.85 3.85
2227 2360 1.299468 CGAGCTACGGCACTGATCC 60.299 63.158 0.00 0.00 41.70 3.36
2228 2361 4.310672 CGAGCTACGGCACTGATC 57.689 61.111 0.00 0.00 41.70 2.92
2237 2370 2.284417 GCAGGTTATTTTCCGAGCTACG 59.716 50.000 0.00 0.00 42.18 3.51
2238 2371 3.267483 TGCAGGTTATTTTCCGAGCTAC 58.733 45.455 0.00 0.00 34.06 3.58
2239 2372 3.620427 TGCAGGTTATTTTCCGAGCTA 57.380 42.857 0.00 0.00 34.06 3.32
2240 2373 2.489938 TGCAGGTTATTTTCCGAGCT 57.510 45.000 0.00 0.00 34.06 4.09
2241 2374 2.747446 TCTTGCAGGTTATTTTCCGAGC 59.253 45.455 0.00 0.00 0.00 5.03
2242 2375 5.371115 TTTCTTGCAGGTTATTTTCCGAG 57.629 39.130 0.00 0.00 0.00 4.63
2243 2376 5.475220 TCATTTCTTGCAGGTTATTTTCCGA 59.525 36.000 0.00 0.00 0.00 4.55
2244 2377 5.708948 TCATTTCTTGCAGGTTATTTTCCG 58.291 37.500 0.00 0.00 0.00 4.30
2245 2378 7.278646 GGATTCATTTCTTGCAGGTTATTTTCC 59.721 37.037 0.00 0.00 0.00 3.13
2246 2379 7.009540 CGGATTCATTTCTTGCAGGTTATTTTC 59.990 37.037 0.00 0.00 0.00 2.29
2247 2380 6.813152 CGGATTCATTTCTTGCAGGTTATTTT 59.187 34.615 0.00 0.00 0.00 1.82
2248 2381 6.071391 ACGGATTCATTTCTTGCAGGTTATTT 60.071 34.615 0.00 0.00 0.00 1.40
2249 2382 5.418840 ACGGATTCATTTCTTGCAGGTTATT 59.581 36.000 0.00 0.00 0.00 1.40
2250 2383 4.949856 ACGGATTCATTTCTTGCAGGTTAT 59.050 37.500 0.00 0.00 0.00 1.89
2251 2384 4.155826 CACGGATTCATTTCTTGCAGGTTA 59.844 41.667 0.00 0.00 0.00 2.85
2252 2385 3.057315 CACGGATTCATTTCTTGCAGGTT 60.057 43.478 0.00 0.00 0.00 3.50
2253 2386 2.489329 CACGGATTCATTTCTTGCAGGT 59.511 45.455 0.00 0.00 0.00 4.00
2254 2387 2.749076 TCACGGATTCATTTCTTGCAGG 59.251 45.455 0.00 0.00 0.00 4.85
2255 2388 4.142534 ACATCACGGATTCATTTCTTGCAG 60.143 41.667 0.00 0.00 0.00 4.41
2256 2389 3.758023 ACATCACGGATTCATTTCTTGCA 59.242 39.130 0.00 0.00 0.00 4.08
2257 2390 4.361451 ACATCACGGATTCATTTCTTGC 57.639 40.909 0.00 0.00 0.00 4.01
2258 2391 6.025896 CAGAACATCACGGATTCATTTCTTG 58.974 40.000 0.00 0.00 0.00 3.02
2259 2392 5.707298 ACAGAACATCACGGATTCATTTCTT 59.293 36.000 0.00 0.00 0.00 2.52
2260 2393 5.248640 ACAGAACATCACGGATTCATTTCT 58.751 37.500 0.00 0.00 0.00 2.52
2261 2394 5.551760 ACAGAACATCACGGATTCATTTC 57.448 39.130 0.00 0.00 0.00 2.17
2262 2395 5.964958 AACAGAACATCACGGATTCATTT 57.035 34.783 0.00 0.00 0.00 2.32
2263 2396 7.447374 TTTAACAGAACATCACGGATTCATT 57.553 32.000 0.00 0.00 0.00 2.57
2264 2397 7.447374 TTTTAACAGAACATCACGGATTCAT 57.553 32.000 0.00 0.00 0.00 2.57
2265 2398 6.869315 TTTTAACAGAACATCACGGATTCA 57.131 33.333 0.00 0.00 0.00 2.57
2266 2399 6.581166 GGTTTTTAACAGAACATCACGGATTC 59.419 38.462 0.00 0.00 0.00 2.52
2267 2400 6.039941 TGGTTTTTAACAGAACATCACGGATT 59.960 34.615 0.00 0.00 0.00 3.01
2268 2401 5.533154 TGGTTTTTAACAGAACATCACGGAT 59.467 36.000 0.00 0.00 0.00 4.18
2269 2402 4.882427 TGGTTTTTAACAGAACATCACGGA 59.118 37.500 0.00 0.00 0.00 4.69
2270 2403 5.176407 TGGTTTTTAACAGAACATCACGG 57.824 39.130 0.00 0.00 0.00 4.94
2271 2404 7.433719 TGATTTGGTTTTTAACAGAACATCACG 59.566 33.333 0.00 0.00 0.00 4.35
2272 2405 8.641499 TGATTTGGTTTTTAACAGAACATCAC 57.359 30.769 0.00 0.00 0.00 3.06
2273 2406 9.829507 AATGATTTGGTTTTTAACAGAACATCA 57.170 25.926 0.00 0.00 0.00 3.07
2276 2409 9.883142 AGAAATGATTTGGTTTTTAACAGAACA 57.117 25.926 0.00 0.00 0.00 3.18
2278 2411 8.825745 GCAGAAATGATTTGGTTTTTAACAGAA 58.174 29.630 0.00 0.00 0.00 3.02
2279 2412 7.984050 TGCAGAAATGATTTGGTTTTTAACAGA 59.016 29.630 0.00 0.00 0.00 3.41
2280 2413 8.140677 TGCAGAAATGATTTGGTTTTTAACAG 57.859 30.769 0.00 0.00 0.00 3.16
2281 2414 8.498054 TTGCAGAAATGATTTGGTTTTTAACA 57.502 26.923 0.00 0.00 0.00 2.41
2282 2415 9.949174 AATTGCAGAAATGATTTGGTTTTTAAC 57.051 25.926 0.00 0.00 0.00 2.01
2284 2417 8.782144 GGAATTGCAGAAATGATTTGGTTTTTA 58.218 29.630 0.00 0.00 0.00 1.52
2285 2418 7.284944 TGGAATTGCAGAAATGATTTGGTTTTT 59.715 29.630 0.00 0.00 0.00 1.94
2286 2419 6.771749 TGGAATTGCAGAAATGATTTGGTTTT 59.228 30.769 0.00 0.00 0.00 2.43
2287 2420 6.297582 TGGAATTGCAGAAATGATTTGGTTT 58.702 32.000 0.00 0.00 0.00 3.27
2288 2421 5.867330 TGGAATTGCAGAAATGATTTGGTT 58.133 33.333 0.00 0.00 0.00 3.67
2289 2422 5.246656 TCTGGAATTGCAGAAATGATTTGGT 59.753 36.000 25.40 0.00 0.00 3.67
2290 2423 5.726397 TCTGGAATTGCAGAAATGATTTGG 58.274 37.500 25.40 0.00 0.00 3.28
2291 2424 8.195436 ACTATCTGGAATTGCAGAAATGATTTG 58.805 33.333 30.01 16.83 0.00 2.32
2292 2425 8.302515 ACTATCTGGAATTGCAGAAATGATTT 57.697 30.769 30.01 16.07 0.00 2.17
2293 2426 7.014038 GGACTATCTGGAATTGCAGAAATGATT 59.986 37.037 30.01 16.72 0.00 2.57
2294 2427 6.489361 GGACTATCTGGAATTGCAGAAATGAT 59.511 38.462 30.01 17.38 0.00 2.45
2295 2428 5.824624 GGACTATCTGGAATTGCAGAAATGA 59.175 40.000 30.01 16.06 0.00 2.57
2296 2429 5.591472 TGGACTATCTGGAATTGCAGAAATG 59.409 40.000 30.01 23.22 0.00 2.32
2297 2430 5.759059 TGGACTATCTGGAATTGCAGAAAT 58.241 37.500 30.01 18.71 0.00 2.17
2298 2431 5.178096 TGGACTATCTGGAATTGCAGAAA 57.822 39.130 30.01 11.90 0.00 2.52
2299 2432 4.842531 TGGACTATCTGGAATTGCAGAA 57.157 40.909 30.01 18.72 0.00 3.02
2300 2433 6.126796 TGTTATGGACTATCTGGAATTGCAGA 60.127 38.462 28.78 28.78 0.00 4.26
2301 2434 6.057533 TGTTATGGACTATCTGGAATTGCAG 58.942 40.000 20.04 20.04 0.00 4.41
2302 2435 6.000246 TGTTATGGACTATCTGGAATTGCA 58.000 37.500 0.00 0.00 0.00 4.08
2303 2436 6.942532 TTGTTATGGACTATCTGGAATTGC 57.057 37.500 0.00 0.00 0.00 3.56
2304 2437 7.420800 GCTTTGTTATGGACTATCTGGAATTG 58.579 38.462 0.00 0.00 0.00 2.32
2305 2438 6.260936 CGCTTTGTTATGGACTATCTGGAATT 59.739 38.462 0.00 0.00 0.00 2.17
2306 2439 5.760253 CGCTTTGTTATGGACTATCTGGAAT 59.240 40.000 0.00 0.00 0.00 3.01
2307 2440 5.116180 CGCTTTGTTATGGACTATCTGGAA 58.884 41.667 0.00 0.00 0.00 3.53
2308 2441 4.693283 CGCTTTGTTATGGACTATCTGGA 58.307 43.478 0.00 0.00 0.00 3.86
2309 2442 3.248602 GCGCTTTGTTATGGACTATCTGG 59.751 47.826 0.00 0.00 0.00 3.86
2310 2443 3.871006 TGCGCTTTGTTATGGACTATCTG 59.129 43.478 9.73 0.00 0.00 2.90
2311 2444 4.137116 TGCGCTTTGTTATGGACTATCT 57.863 40.909 9.73 0.00 0.00 1.98
2312 2445 4.875544 TTGCGCTTTGTTATGGACTATC 57.124 40.909 9.73 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.