>input_sequence_83539
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-----------------------------ATGTTGAAGCCGGCGGCATCATCTTCCTCGTGGGTCCTGTGCCGGGCTCTC
ATCGCCGCTGCACTGATCATGTGTGCGGCCAACGTTGAGCTTGTCCATGCAGGTAA-TTCG-------------------
------------CCATATCTTCACTGAACTCTGTTGTGATCGATCGATGTGCCAACCGATATCCCTATT-----------
-TGTGTGCAGGTGGCAGGCCAGTGCCGAGACCTCCGGCTCCGGTAGGGCATGTGGCTCCCAAGGAGCACTGCCCTGACTG
CAGCGACAACCCGCCACCGT---CGCCCCCGCTTCCTCCTACTCCTCCGGCAGCCTCAGCAGACGTACCTCCTGCTGGCA
GCCATATGTAA---------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G011000
TTGAGATTCTGTGCTCACTGGGGCCCAACTATTATGATTACTACTGGTTGGGGTGTCATCTTCTGGCGCCGCTTGCGAGG
AAGTTGTGCACACGTTTTCATTTTTAAAAAATAGACAAAGCCCCCGCCTCCGTCTAGAAAAACATTAAAAAAATCCTCAC
CTCCATCTAGAAAAAGAAGTGA----------AAAAAAATTATCAATGCAACCTACCAGCAAGCCTCACATTGCGTAGCC
CTCCATGTAAAAAATTA--------------------------------------TTTTAAAAAATTCCTCAACTCCATC
TAAAAATAATATTCCAAAAGCTTTTTCATCATGGCCAACCAGTTCGCGCCACATGGCATATCTGGTTGGCTGCCTTTCAC
ACGACCCTTAGTGGGTTTAATAGTCTCTTCATCTTTCTTGGCTGTTTTCAGTGGTGGCAAGCTTGGGGTGTTCAAACCTT
CCGTTCCGTTATCAGCCACGGAGATCAAATCTCTTCATACTTGTTTTCGTTGGTAGGAGAGGGATTTTCGTGCATGCTAG
CCTTGCCGGCTCAGCTGGTGAACCACTTGCTCTTTGTTGACGGTAGCCTGTTGTTTTTTT--AAGCCAGCGGTGATACAA
CGAATTTGGATTCCCACTCTCTTATTGCTGGGATTACTACTTGTTGTTGCTGGATTGTAATATGCGCAATTGTACCACGA
AAGAGTGATCATTCCAAAGCTATGCTGCAGCTGGTACGTACACGTACCTACTTCCTCGGTCTCACAATATAAGATCATTT
TTCAAGCTATATTATGTGTTAGCTGTCACGCGGTTTTCTTAAACAGTCTTACAGATGTGGAAATGTCCATCTCGTTGACG
GCGTGCAGTCGTCGTTGGCGAGCTCCATGCCGAAGCATGCGTTCATACATACATAAGTGGTTATACAACACT-GGTTGCT
GGAAATT----------AAACTATACGTCTATATATACATACATATGCAAGCATGCATCCACATGCAGTCGTTCCCAGAA
CGATCCAA--------GTTAACACCAAAGATGTTGAAGCCGGCGGCATCATCTTCCTCGTGGGTCCTGTGCCGGGCTCTC
ATCGCCGCTGCACTGATCATGTGTGCGGCCAACGTTGAGCTTGTCCATGCAGGTAA-TTCG-------------------
------------CCATATCTTCACTGAACTCTGTTGTGATCGATCGATGTGCCAACCGATATCCCTATT-----------
-TGTGTGCAGGTGGCAGGCCAGTGCCGAGACCTCCGGCTCCGGTAGGGCATGTGGCTCCCAAGGAGCACTGCCCTGACTG
CAGCGACAACCCGCCACCGT---CGCCCCCGCTTCCTCCTACTCCTCCGGCAGCCTCAGCAGACGTACCTCCTGCTGGCA
GCCATATGTAATGTACGCTTGGCGCGCTTCCGCGTTGCACAGCAGGCCGCTGTAGACATTTCAAGGTTTACTTCAGTCCG
TTTGACTTATCCC---------AGTGGTACTAGTTCTTTTTCTTTCTGAGGCGACACTGGTACTAGTTGTATCGCATGGA
TATGTTTGTTTGTTCGGTTTTGCTACGTCTCAATCGAC-GATTCTATTGAGTGTAAATTAGTTCAGAAAGAACACAAATT
AGTCGTCGTCTATAAAGCTATGCTGAATGTGTAGATTGGTCACGTACCTATTAAACCCTGCAAATTGCCAAATTGTGCGC
CGGCCACCAT-TCTATCATGGTTGCTGTTAACTGAGCGCATATACTGGTCAATCATTAAGACAACATGTGAGCGTGAGGC
TACATTTTT-TAACACAATATAGACGTAAAGGGTAAGGGTCATACATACGAAC--ATACACCTATCTCTATGAACACACG
CGCACACACT--ATCCCTATGAGCAATTCATGCTTATAGGTTGTTGTGAAAACCATTTTGCAACTATCCTCCTTCCATTA
AATTGTCTTTTTTTTCGAAAAGGGGGGTCTCCCCGGCCTCTGCATCAAAACGATGCATACGGCCATCTTATTAATAAAAA
AAGGCAAAAGTGCCAACAAGGTTCCACAATCTCCAGGTAAACAAAAGGATAAAAAGAAATGCAGCTCACACAGAGCTACA
GACGGCTAGATATACAAACTAGCCCAAAAAAGAAGCCACAACCGGCTGGCTAACAATAGATAGGGAAACTAATTGCCTAT
CCTATTACATGACCGCCATCCAAACCGGTTGAAGATATCCCGAGCGACCATCTCCCAACGGATAGATCCAGTAACCAAAT
GCTCCCTGGCCTCTATCGGAGTGAGTAACGACCACGAACGGATCAGTGCCGTAGCTCGGAAAATAACCTGCAAGAAATGA
ATCCGTGATGTTCTGTTAAAAACCAAATCATTTCTGCAATTCCAGATAGTCCATAACAAAGCGCAAA
>chr3D_1
TTGAGATTCTATGCTCACTAGGGTCCAACTATTATGAGTACCACTGGTTGGGGCGTCATCTTCTGGCGCCGCTTGCGAGG
AAGATGTGCACACGTTTTTATTAAAAAAAGATAGATGAAGCCCTCGCCTCCATCTAGAAAAATATTAAAAAAATCCTCAC
CTTCATCTAGAAAAAGAAGTGAAAAAGAAAAGAAAAAAATTATCAATGCAACCTACCAGCGAGCGTCACTTTGCGTAGCC
CTTCATGTAAAAAAATATGTAGGTTCATCACCTTCATCTAAAAAGAAAAAAATATTTTAAAAAAATTCCTCAACTGCATC
TAAAAATAATATCCCAAAAGCTTTTTCACCATGGCCAATCAGTTCGCGCCACATGGCATATCTGGTTGGCTGCCTTTCAC
GTGACCCTTAGTGGGTTTAATAGTCTCTTCATCTTTCCTGGCTGTTTTCAATGGTGGCAAGCTTGGGGTGTTCAAAGCTT
CCGTTCCGTTATCAGCCACGGAGATCAAATCTCTTCATGCTTGTTTTCGTTGGTAGGAGAGGGATTTTCGTGCATGCTAG
CCTTGCCGGCTCAGCTGGTGAACCACTCGCTCTTTGTTAACGGCAGCCTGTTGTTTTTTCAAAAGCCAGCGGTGATACAA
CGAATTTGGATTCCCACTCTCTTATTGCCGGGATTACTACTTGTTGTTGCTGGATTGTAATATGCGCAATTGTACCACGA
GAGAGTGATCATTCCAAAGCTATGCTGCAGCTGGTAACAT---GTACCTACTTCCTCCGTCTCACAATATAAGATCATTT
TTTAAGTTATATTATGTGTTAGCTGTCACGCGGTTT-CTTAATAAGTCTTACAGATGTGGAAAAGTCCATCTCGTTGACG
GCGTGCAGTCGCCGTTGGCGAGCTCCATGCCGGAGCATGCGTTCATACATACATAAGTGGTTATACA-CACT-GGTTGCT
GGAAATT----------AAACTATACGTCTATATATACATACATATACAAGCATGCATCCACATGCAGTCGTTCCCAGAA
CGATCCAA--------GTTAACACCAAAGATGTTGAAGCCGGCGGCATCATCTTCCTCGTCGGTCCTGTGCTGGGCTGTC
ATCGCCGCTGCACTGATCATGTGTGCGGCCAACGTTGAGCTTGTCCATGGAGGTAA-TTAACCCCGCAAAAAAATTAACC
ACCAGATGATCTCCATATCTTCACTGAACTCTGTTGTGATCGATCGATGTGCCAACCGATATTCCTATT-----------
-TGTGTGCAGGTGGAAGGCCAGTGCCGAGACCTCCGGCTCCGGTAGGGCATGTGGCTCCCAAGGAGCACTGCCCTGACTG
CAGCGACAACCCACCACCGT---CGCCCCCGCTTCCTCCTACTCCTCCGGCAGCCACAGCGGACGTACCTCCTGCTGCCA
GCCATATGTAATGTATGCTTGCCGTGCTTCCGCGTTGCACAGCAGGCCGCTGTAGACATTTCAAGGTTTACTTCAGTCCG
TTTGACTTATCCC---------AGTGGTACTAGTTCTTTTTCTTTTTGAGGCGACACTGGTACTAGTTGTATCGCATGGA
TATGTTTGTTTGTTCGGTTTTGCTATGTCTCAATCGAC-GATTCTATTGAGTGTAAATTAGTCCAGGAAGAACACAAATT
AGTCGTCGTCTATAAAGCTATGCTGAATGTGTAGATTGGTCACGTACCTATTAAACCCTGCAAATTGCCAAATTGTGCGC
CCGCCACCAT-TCTATCATGGTTGCTGTTAACTGGGCGCATATACTGGTCAATCATTAAGACAACATGTGAGCGTGAGGC
TATATTTTTCTAACACAATACAGACGTAAAAAGTAAGGGTCATACATA--------------------TATGAACACACG
CACACACACTCTATCCCTATGAGCAACTCATGCTTCTAGGTTGTTGTGAAAACCATTTTGCAACTATCCTCCTTCCATTA
AATTGTCTTT----------------------------------------------------------------------
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>chr3B_766
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---------------GTGTTAGCTGTCACGCGGTTTTGTTAAACAGTCTTACAGACGTGGAAACGCCCATCTCGTTGACG
GCGTGCAGTAGTCGTTGCTGTGCTCCATGCCGGAGCATGCGTTCACACATACATAAGTGGT--TACA-CACT-GGTTGCT
A------------------------CGCCTATAT----ATACATATACAAGCATGCATCCACATGCAGTCGTTCCCAGTT
AA---------------TTAACACCAAAAATGTTGAAGCCCGTGGCATCGTCTTCCTCGTCGGCCCGGTTCTGGGCCGTC
ATCGCCGCTGCACTGATCTTGTGTGCGGCCAACGTTGAGCTTGTCCATGGAGGTAA-TTA-----------------ACC
ATGAGCTGATCTCCATATCTTCACTAAACTCTTTTGTGATCAATCGAGGTGCCAACTGATATTCCTATGTATG------T
GTGTGTGCAGGTGGAAGGCCTGTGCCTAGACCTCCAGCTCCGGTAGGGCATGTGGCTCCCAAGGAGCACTGCCCTGACTG
CAGCGACAACCTGCCACCGTCGCCGCCGCCGCTTCCTCCTACTCCTCCGGCAGCTGCAGCAGGCGTACCTCCTGCTAGCG
GCCATGTGTGATGTAGGCTTTGCGCGCTCCTCCGGA-----------CGCTGCAGAAATTTCAATGTTTACTACAGTCCG
TTTGACGACTTGCCTCAACGGTAGTACTACTAGTTATGGTTTTCTTTGAGGCGACACTGGTACTAGTTGTATTGCATGGA
TATGTTTGTTTATTCAGTTTTGCTATTTCTCAATCGACAGATTTCATCGAGTGTAAATTAGTTCAGAGAGAACACAAATT
AGTCGTGGTCTATAGAGCTATGCA-------TACACTGGTCACACAATTATTAAACCGTGCAAATTGCCAAATTGTGCGC
CAGCCACCAA-TCTACCATGGTTGCTGTTAACTGGGCCCATATATTGGTCAATTATTAAGTCAGCATGTGAGCGTGAGTC
TACTC-TTTTTAACACAATACATATGTAAACGC------TCATACATACGCATATATACACTCATCTTTATAAACACACG
CACGCACTGTCTATCCCTATAGGCAACTCTGTATCCTGGGTTGTTGTGAAAACCATCTTGTAACTATCCTCCTTCCATTA
AACTGCCTTTATT-------------------------------------------------------------------
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>chr3B_795
AGTCTG--------------------------------------------------------------------------
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---------------------------------------------------CAGATGTGGAAACGCCCATCTCGTTGACG
GCGTGCAGTCGTCGTTGCCGTGCTCCATGCCGGAGCATGCGTTCATACATGCATAAGTGGT--TACA-CACTAGGTTGCT
AGAAATTAAGCAGACGAAAACTATTCGTCTATAT----ATACGTATACAAGCATGCATCTATTACATGAAGATGTCGAAG
ATAGATAGATAGAGAGGTTAACACCAAAGATGTTGAAGCCCGTGGCATCGTCTTCCTCGTCGGTCCGGTGCTGGGCGGTC
ATCGCCGCTGCACTGATCCTGTGTGCGGCCAACGTTGAGCTTGTCCATGGAGGTAAATTA-----------------AGC
ATGAGATGATCTCCATATCTTCACTAAACTCTGTTATGATCGATCGATGTGCCAACCGATATTCATATTCCTGTATGTAT
GTGTGTGCAGGTGGGAGGCCTGTGCCGAGACCTCCGGCTCCGGTAGGGCATGTGGCTCCCAAGGAGCACTGCCCTGACTG
CAGCGACAACCCGCCACCGT---CGCCGCCGCTTCCTCCTACTCCTCCGGCGGCTGCAGCAGAAGCACCTCCTGCTAGCA
GCCATGTGTGATGTAGGCTGTGTGCGCTCCCTCGTTGGGCAGCAGGCCACTGCAGACATTTCGACGTTTACTACAGTCTG
TTTGACTTGCTAC---------AGTGGTACTAGTTCTTTTTCTCTTTGAGCCGACACTGG--------------------
TATGTGTGTTTGTTTGGTTTTGCTATGTCTCAATCGAC-GGTTCAATTGAGTGTAAATTAGTTCAGAAAGAACACAAATA
AGTCGCGGTCTATAAAGCTACGCTGGATGTGTACACTGGCCACACAATTATTAAACCGTGCAAATTACCAAATTGTGCGC
CCGCCACCAAATCTATCATGGTTGCTGTTAA-------------------------------------------------
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>SNPs
----------S--------S---S-------------S---S-----------S--------------------------
---S--------------S---SSS----S-----SS------S-------S----------S-----------------
--S---------------------------------------------------------S---S----S----------
--S-----------S-------------------------------------------S----------------S----
------------S---------------S---------S-----------------------------------------
SS-----------------------------------S------------S-------------------------S---
--------------------------------------S-----------------------------------------
---------------------------S----------S----S---------------S--------------------
----------------------------S---------------------------------------------------
S-----------------------------------SSSSSSS--------------S----------------------
--S---S--------------------------------------------------------S----------------
--------------------------------S----------------------------------S------------
----------------------------------------------S---------------------------------
------------------------------------------------------------S----------S-----S--
-------------------------------------------------S---------SS-------------------
--------------------------------------------------------------S-----------------
--------------S-----------------------------------------------------------------
-------------------------------------------------------S------------------------
---------------S----------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------S------------------------------------------------------
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-S--------------------------------S---------------------------------------------
--------------------S---------S-------------------S-S--------SS----S------------
-S------------------------S--------S--------------------------------------------
----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_759
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-------------------CTATGCTGCAGCTGGTACGT-----------------------------------------
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>reverse_2089
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--------AGTGCCAACAAGGTTCCACA----------------------------------------------------
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