Multiple sequence alignment - TraesCS2D01G599900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G599900 chr2D 100.000 3461 0 0 1 3461 650926517 650929977 0.000000e+00 6392.0
1 TraesCS2D01G599900 chr2A 89.668 2168 130 33 361 2464 777100469 777098332 0.000000e+00 2676.0
2 TraesCS2D01G599900 chr2A 92.081 543 40 2 2922 3461 777098219 777097677 0.000000e+00 761.0
3 TraesCS2D01G599900 chr2A 83.333 138 20 3 2919 3053 12635824 12635961 1.300000e-24 124.0
4 TraesCS2D01G599900 chrUn 91.671 1741 93 22 830 2540 23424634 23426352 0.000000e+00 2364.0
5 TraesCS2D01G599900 chrUn 80.757 634 84 23 1 605 23423535 23424159 8.750000e-126 460.0
6 TraesCS2D01G599900 chrUn 80.472 635 85 24 1 605 23416795 23417420 1.890000e-122 449.0
7 TraesCS2D01G599900 chrUn 89.305 187 11 7 830 1010 23417895 23418078 3.480000e-55 226.0
8 TraesCS2D01G599900 chrUn 84.106 151 20 4 3179 3326 23426493 23426642 3.600000e-30 143.0
9 TraesCS2D01G599900 chr2B 80.800 625 80 25 1 595 779891864 779892478 1.460000e-123 453.0
10 TraesCS2D01G599900 chr2B 91.860 172 9 4 830 999 779888708 779888876 5.770000e-58 235.0
11 TraesCS2D01G599900 chr2B 90.659 182 8 6 835 1010 779883731 779883909 2.080000e-57 233.0
12 TraesCS2D01G599900 chr2B 85.030 167 21 4 611 775 526385402 526385566 2.140000e-37 167.0
13 TraesCS2D01G599900 chr7D 86.296 270 33 3 2558 2826 606788915 606789181 1.220000e-74 291.0
14 TraesCS2D01G599900 chr7D 80.625 160 23 8 608 763 193187746 193187901 2.180000e-22 117.0
15 TraesCS2D01G599900 chr4D 85.145 276 33 5 2558 2833 483964613 483964880 3.400000e-70 276.0
16 TraesCS2D01G599900 chr4D 84.118 170 24 3 2925 3093 19772632 19772465 9.940000e-36 161.0
17 TraesCS2D01G599900 chr4D 94.286 35 2 0 149 183 48682111 48682145 2.000000e-03 54.7
18 TraesCS2D01G599900 chr4A 84.239 184 28 1 210 392 564643540 564643723 9.870000e-41 178.0
19 TraesCS2D01G599900 chr1D 87.121 132 14 3 605 735 374333758 374333629 2.780000e-31 147.0
20 TraesCS2D01G599900 chr1D 80.814 172 28 5 615 785 78132753 78132920 2.800000e-26 130.0
21 TraesCS2D01G599900 chr7A 87.402 127 12 3 2925 3051 621568944 621569066 3.600000e-30 143.0
22 TraesCS2D01G599900 chr7A 87.156 109 11 3 2925 3032 666997469 666997363 1.690000e-23 121.0
23 TraesCS2D01G599900 chr6D 81.176 170 31 1 607 776 447099137 447099305 6.030000e-28 135.0
24 TraesCS2D01G599900 chr6A 83.221 149 23 2 2919 3067 574247946 574248092 6.030000e-28 135.0
25 TraesCS2D01G599900 chr6A 79.412 170 32 3 608 776 98213368 98213535 2.180000e-22 117.0
26 TraesCS2D01G599900 chr5B 79.365 189 36 3 608 794 291381767 291381580 2.800000e-26 130.0
27 TraesCS2D01G599900 chr5B 76.419 229 36 11 177 388 96326256 96326483 1.310000e-19 108.0
28 TraesCS2D01G599900 chr6B 81.081 148 25 3 614 759 561249807 561249661 7.850000e-22 115.0
29 TraesCS2D01G599900 chr3D 82.400 125 20 2 2930 3052 16373146 16373270 1.310000e-19 108.0
30 TraesCS2D01G599900 chr7B 80.132 151 22 7 2928 3074 87456301 87456155 4.720000e-19 106.0
31 TraesCS2D01G599900 chr5A 80.882 136 18 6 2931 3066 13093071 13093198 2.200000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G599900 chr2D 650926517 650929977 3460 False 6392.0 6392 100.000000 1 3461 1 chr2D.!!$F1 3460
1 TraesCS2D01G599900 chr2A 777097677 777100469 2792 True 1718.5 2676 90.874500 361 3461 2 chr2A.!!$R1 3100
2 TraesCS2D01G599900 chrUn 23423535 23426642 3107 False 989.0 2364 85.511333 1 3326 3 chrUn.!!$F2 3325
3 TraesCS2D01G599900 chrUn 23416795 23418078 1283 False 337.5 449 84.888500 1 1010 2 chrUn.!!$F1 1009
4 TraesCS2D01G599900 chr2B 779888708 779892478 3770 False 344.0 453 86.330000 1 999 2 chr2B.!!$F3 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 3231 0.037303 CAGACATGCCTGGTTGAGGT 59.963 55.0 0.22 0.0 44.97 3.85 F
780 4201 0.108329 AATAACACGAGCACCGGGAG 60.108 55.0 6.32 0.0 46.66 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 4790 1.074951 GGCCTGTAGGTTGTTGCCT 59.925 57.895 0.00 0.0 42.43 4.75 R
2593 6097 0.038983 GTTGGGCGCCGTATTTTTGT 60.039 50.000 22.54 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 3209 2.310930 TTTGGCCCAACTTGGAGGCT 62.311 55.000 9.61 0.00 46.31 4.58
53 3210 2.361737 GGCCCAACTTGGAGGCTC 60.362 66.667 9.61 5.78 46.31 4.70
54 3211 2.436109 GCCCAACTTGGAGGCTCA 59.564 61.111 17.69 0.00 40.96 4.26
60 3217 1.131638 AACTTGGAGGCTCACAGACA 58.868 50.000 17.69 1.17 0.00 3.41
68 3225 1.002868 GCTCACAGACATGCCTGGT 60.003 57.895 13.95 0.00 38.44 4.00
74 3231 0.037303 CAGACATGCCTGGTTGAGGT 59.963 55.000 0.22 0.00 44.97 3.85
81 3238 1.004277 TGCCTGGTTGAGGTATGGTTC 59.996 52.381 0.00 0.00 44.97 3.62
82 3239 1.282157 GCCTGGTTGAGGTATGGTTCT 59.718 52.381 0.00 0.00 44.97 3.01
84 3241 2.571653 CCTGGTTGAGGTATGGTTCTCA 59.428 50.000 0.00 0.00 37.02 3.27
85 3242 3.369892 CCTGGTTGAGGTATGGTTCTCAG 60.370 52.174 0.00 0.00 40.55 3.35
86 3243 2.571653 TGGTTGAGGTATGGTTCTCAGG 59.428 50.000 0.00 0.00 40.55 3.86
93 3250 1.633945 GTATGGTTCTCAGGGTGGGTT 59.366 52.381 0.00 0.00 0.00 4.11
112 3269 2.823747 GTTCCCCTTAGCGAATGGTTTT 59.176 45.455 0.59 0.00 0.00 2.43
113 3270 4.011698 GTTCCCCTTAGCGAATGGTTTTA 58.988 43.478 0.59 0.00 0.00 1.52
116 3273 5.265989 TCCCCTTAGCGAATGGTTTTATTT 58.734 37.500 0.59 0.00 0.00 1.40
135 3292 0.605319 TGCGAGACCGGCAATTTTCT 60.605 50.000 0.00 0.00 37.49 2.52
136 3293 0.179189 GCGAGACCGGCAATTTTCTG 60.179 55.000 0.00 0.00 36.06 3.02
137 3294 0.447801 CGAGACCGGCAATTTTCTGG 59.552 55.000 0.00 0.00 36.07 3.86
168 3325 2.142357 GAGGCCGTTTGGTTTCAGGC 62.142 60.000 0.00 0.00 46.51 4.85
169 3326 2.338620 GCCGTTTGGTTTCAGGCC 59.661 61.111 0.00 0.00 41.81 5.19
199 3365 6.782082 TGCCATACAATATTGCCAAACTTA 57.218 33.333 15.48 0.00 0.00 2.24
211 3377 9.695155 ATATTGCCAAACTTACATAAGGTTAGT 57.305 29.630 1.66 0.00 41.01 2.24
230 3396 3.690460 AGTTTTTCGGAATGAGAGCCAT 58.310 40.909 0.00 0.00 36.99 4.40
233 3399 5.888161 AGTTTTTCGGAATGAGAGCCATAAT 59.112 36.000 0.00 0.00 34.45 1.28
257 3423 6.892658 TTGGCAAGCTTAAGACAATCTTAA 57.107 33.333 6.67 9.94 44.16 1.85
260 3426 6.086871 GGCAAGCTTAAGACAATCTTAACAC 58.913 40.000 6.67 3.66 42.23 3.32
262 3428 6.578919 GCAAGCTTAAGACAATCTTAACACAC 59.421 38.462 6.67 0.00 42.23 3.82
283 3449 5.514274 ACTTTTTAAGTGTGTGGGATGTG 57.486 39.130 0.00 0.00 41.01 3.21
296 3462 1.343681 GGGATGTGGGACCCTAGTGTA 60.344 57.143 13.00 0.00 42.56 2.90
311 3493 4.213482 CCTAGTGTAGCTTGAACCAAACAC 59.787 45.833 0.00 0.00 34.66 3.32
315 3497 2.086610 AGCTTGAACCAAACACCCAT 57.913 45.000 0.00 0.00 0.00 4.00
320 3502 4.321230 GCTTGAACCAAACACCCATCTAAG 60.321 45.833 0.00 0.00 0.00 2.18
323 3505 4.582656 TGAACCAAACACCCATCTAAGTTG 59.417 41.667 0.00 0.00 0.00 3.16
350 3532 3.412386 ACTTGCTTAAGCTTAGGTGTGG 58.588 45.455 26.90 9.44 42.66 4.17
369 3552 5.049612 GTGTGGAACCTTAGACAAACTTAGC 60.050 44.000 0.00 0.00 34.36 3.09
382 3565 4.709886 ACAAACTTAGCCTCAAACCAAACT 59.290 37.500 0.00 0.00 0.00 2.66
423 3606 6.742718 CGAATTTGTCATGTTGGCTAACTAAG 59.257 38.462 14.47 4.26 37.68 2.18
435 3618 2.906354 CTAACTAAGCTTGCCATCCGT 58.094 47.619 9.86 0.00 0.00 4.69
539 3723 5.782845 TGGGACCTAATTTTAATTTGGCACT 59.217 36.000 13.30 0.00 42.57 4.40
584 3768 2.567169 GCCCTGGGAGCAACTTTTTAAT 59.433 45.455 19.27 0.00 0.00 1.40
586 3770 4.504864 GCCCTGGGAGCAACTTTTTAATTT 60.505 41.667 19.27 0.00 0.00 1.82
639 4058 6.315891 GCAAATCCTATCCTTATGAGCATCTC 59.684 42.308 0.00 0.00 34.92 2.75
656 4075 0.748729 CTCCGAGAGACTTAGCCGGT 60.749 60.000 1.90 0.00 40.87 5.28
667 4086 8.057536 AGAGACTTAGCCGGTATATAATCTTG 57.942 38.462 1.90 0.00 0.00 3.02
700 4119 1.303074 ACCACAGACGCCTCGTAGA 60.303 57.895 0.00 0.00 41.37 2.59
718 4139 2.265096 ACGAGGGGAACGTCTTCTC 58.735 57.895 0.00 0.00 42.98 2.87
735 4156 3.934457 TCTCTCACTAAACACGCATCA 57.066 42.857 0.00 0.00 0.00 3.07
737 4158 5.576447 TCTCTCACTAAACACGCATCATA 57.424 39.130 0.00 0.00 0.00 2.15
776 4197 2.224549 TCCAAAAATAACACGAGCACCG 59.775 45.455 0.00 0.00 45.44 4.94
780 4201 0.108329 AATAACACGAGCACCGGGAG 60.108 55.000 6.32 0.00 46.66 4.30
789 4210 1.670083 GCACCGGGAGTTAAACGCT 60.670 57.895 6.32 0.00 0.00 5.07
799 4220 0.671472 GTTAAACGCTAGTGGGCCGT 60.671 55.000 8.42 0.00 0.00 5.68
800 4221 0.894141 TTAAACGCTAGTGGGCCGTA 59.106 50.000 8.42 0.00 0.00 4.02
808 4252 1.416401 CTAGTGGGCCGTACCAATCAT 59.584 52.381 0.00 0.00 43.34 2.45
811 4255 0.762418 TGGGCCGTACCAATCATAGG 59.238 55.000 0.00 0.00 42.05 2.57
828 4272 2.753055 AGGTTGGTTTGCGTGTTTTT 57.247 40.000 0.00 0.00 0.00 1.94
869 4313 0.322975 AAGTAGTGCTGCTCCCAGTG 59.677 55.000 0.00 0.00 41.26 3.66
952 4402 2.087646 GAAAGTGAAGGAGCACCATCC 58.912 52.381 2.07 0.00 39.59 3.51
1056 4512 1.207390 GCTCAACATTTTGCGTGCAA 58.793 45.000 2.58 2.58 32.17 4.08
1330 4790 3.626680 CTTCCTCTGCGCCGACGAA 62.627 63.158 4.18 8.98 43.93 3.85
1340 4800 2.943653 CCGACGAAGGCAACAACC 59.056 61.111 0.00 0.00 41.41 3.77
1341 4801 1.597027 CCGACGAAGGCAACAACCT 60.597 57.895 0.00 0.00 43.91 3.50
1342 4802 0.320073 CCGACGAAGGCAACAACCTA 60.320 55.000 0.00 0.00 39.93 3.08
1900 5378 3.950794 GACGCGCCCATGTCCTTGA 62.951 63.158 5.73 0.00 0.00 3.02
2028 5506 0.614979 CCCCGTCCTCTTCCTCTTCA 60.615 60.000 0.00 0.00 0.00 3.02
2119 5597 0.664466 CTCAGCTTTCACGAGCACGA 60.664 55.000 11.40 0.00 45.12 4.35
2123 5601 0.939577 GCTTTCACGAGCACGAGTCA 60.940 55.000 11.40 0.00 42.25 3.41
2132 5610 0.882042 AGCACGAGTCAACAAGCCAG 60.882 55.000 0.00 0.00 0.00 4.85
2133 5611 1.845809 GCACGAGTCAACAAGCCAGG 61.846 60.000 0.00 0.00 0.00 4.45
2410 5904 3.754965 TCAAGTCCTGAAAATCCCACTG 58.245 45.455 0.00 0.00 0.00 3.66
2437 5931 2.474410 AGTCTCCGATGAAAACACCC 57.526 50.000 0.00 0.00 0.00 4.61
2462 5956 5.232838 GTGAATGAAACTTGAACCAAAGCAG 59.767 40.000 0.00 0.00 0.00 4.24
2470 5964 3.306472 TGAACCAAAGCAGTTAAGGGT 57.694 42.857 0.00 0.00 0.00 4.34
2484 5978 5.238650 CAGTTAAGGGTTGTAAAGTGAGGTG 59.761 44.000 0.00 0.00 0.00 4.00
2498 5993 2.680339 GTGAGGTGATTTTCTGGCTAGC 59.320 50.000 6.04 6.04 0.00 3.42
2511 6014 3.202373 TCTGGCTAGCTAGTCCTGAGTAA 59.798 47.826 25.34 13.41 0.00 2.24
2540 6044 2.356535 CCTTTTGAGCCTGCTAGATGGT 60.357 50.000 0.00 0.00 0.00 3.55
2546 6050 3.118629 TGAGCCTGCTAGATGGTTGTTAG 60.119 47.826 0.00 0.00 0.00 2.34
2547 6051 3.107601 AGCCTGCTAGATGGTTGTTAGA 58.892 45.455 0.00 0.00 0.00 2.10
2548 6052 3.133721 AGCCTGCTAGATGGTTGTTAGAG 59.866 47.826 0.00 0.00 0.00 2.43
2549 6053 3.462021 CCTGCTAGATGGTTGTTAGAGC 58.538 50.000 0.00 0.00 0.00 4.09
2550 6054 3.118629 CCTGCTAGATGGTTGTTAGAGCA 60.119 47.826 0.00 0.00 36.99 4.26
2551 6055 4.444022 CCTGCTAGATGGTTGTTAGAGCAT 60.444 45.833 0.00 0.00 40.21 3.79
2570 6074 4.949756 GCATCTTGCAATAGTGTTTTTGC 58.050 39.130 0.00 0.88 46.53 3.68
2574 6078 1.404477 GCAATAGTGTTTTTGCGCGT 58.596 45.000 8.43 0.00 38.88 6.01
2575 6079 1.382088 GCAATAGTGTTTTTGCGCGTC 59.618 47.619 8.43 0.00 38.88 5.19
2576 6080 1.637086 CAATAGTGTTTTTGCGCGTCG 59.363 47.619 8.43 0.00 0.00 5.12
2577 6081 0.165079 ATAGTGTTTTTGCGCGTCGG 59.835 50.000 8.43 0.00 0.00 4.79
2578 6082 0.875040 TAGTGTTTTTGCGCGTCGGA 60.875 50.000 8.43 0.00 0.00 4.55
2579 6083 1.721133 GTGTTTTTGCGCGTCGGAG 60.721 57.895 8.43 0.00 0.00 4.63
2580 6084 2.127383 GTTTTTGCGCGTCGGAGG 60.127 61.111 8.43 0.00 0.00 4.30
2581 6085 4.020378 TTTTTGCGCGTCGGAGGC 62.020 61.111 8.43 12.42 0.00 4.70
2582 6086 4.980805 TTTTGCGCGTCGGAGGCT 62.981 61.111 19.12 0.00 0.00 4.58
2583 6087 4.980805 TTTGCGCGTCGGAGGCTT 62.981 61.111 19.12 0.00 0.00 4.35
2584 6088 3.576932 TTTGCGCGTCGGAGGCTTA 62.577 57.895 19.12 6.41 0.00 3.09
2585 6089 4.789075 TGCGCGTCGGAGGCTTAC 62.789 66.667 19.12 9.91 0.00 2.34
2587 6091 4.124351 CGCGTCGGAGGCTTACCA 62.124 66.667 19.12 0.00 39.06 3.25
2588 6092 2.202756 GCGTCGGAGGCTTACCAG 60.203 66.667 14.94 0.00 39.06 4.00
2589 6093 2.707849 GCGTCGGAGGCTTACCAGA 61.708 63.158 14.94 0.00 39.06 3.86
2590 6094 1.433879 CGTCGGAGGCTTACCAGAG 59.566 63.158 0.00 0.00 39.06 3.35
2591 6095 1.817209 GTCGGAGGCTTACCAGAGG 59.183 63.158 0.00 0.00 39.06 3.69
2592 6096 2.058595 TCGGAGGCTTACCAGAGGC 61.059 63.158 0.00 0.00 42.13 4.70
2593 6097 2.359169 CGGAGGCTTACCAGAGGCA 61.359 63.158 0.00 0.00 44.07 4.75
2594 6098 1.222113 GGAGGCTTACCAGAGGCAC 59.778 63.158 0.00 0.00 44.07 5.01
2595 6099 1.553690 GGAGGCTTACCAGAGGCACA 61.554 60.000 0.00 0.00 44.07 4.57
2596 6100 0.324943 GAGGCTTACCAGAGGCACAA 59.675 55.000 0.00 0.00 44.07 3.33
2597 6101 0.771127 AGGCTTACCAGAGGCACAAA 59.229 50.000 1.30 0.00 44.07 2.83
2598 6102 1.144913 AGGCTTACCAGAGGCACAAAA 59.855 47.619 1.30 0.00 44.07 2.44
2599 6103 1.960689 GGCTTACCAGAGGCACAAAAA 59.039 47.619 0.00 0.00 41.49 1.94
2600 6104 2.562738 GGCTTACCAGAGGCACAAAAAT 59.437 45.455 0.00 0.00 41.49 1.82
2601 6105 3.761752 GGCTTACCAGAGGCACAAAAATA 59.238 43.478 0.00 0.00 41.49 1.40
2602 6106 4.380550 GGCTTACCAGAGGCACAAAAATAC 60.381 45.833 0.00 0.00 41.49 1.89
2603 6107 4.671766 GCTTACCAGAGGCACAAAAATACG 60.672 45.833 0.00 0.00 0.00 3.06
2604 6108 2.159382 ACCAGAGGCACAAAAATACGG 58.841 47.619 0.00 0.00 0.00 4.02
2605 6109 1.135402 CCAGAGGCACAAAAATACGGC 60.135 52.381 0.00 0.00 0.00 5.68
2606 6110 0.802494 AGAGGCACAAAAATACGGCG 59.198 50.000 4.80 4.80 0.00 6.46
2607 6111 0.796870 GAGGCACAAAAATACGGCGC 60.797 55.000 6.90 0.00 0.00 6.53
2608 6112 1.803922 GGCACAAAAATACGGCGCC 60.804 57.895 19.07 19.07 0.00 6.53
2609 6113 1.803922 GCACAAAAATACGGCGCCC 60.804 57.895 23.46 2.84 0.00 6.13
2610 6114 1.581954 CACAAAAATACGGCGCCCA 59.418 52.632 23.46 9.79 0.00 5.36
2611 6115 0.039074 CACAAAAATACGGCGCCCAA 60.039 50.000 23.46 9.76 0.00 4.12
2612 6116 0.038983 ACAAAAATACGGCGCCCAAC 60.039 50.000 23.46 0.00 0.00 3.77
2613 6117 0.734597 CAAAAATACGGCGCCCAACC 60.735 55.000 23.46 0.00 0.00 3.77
2614 6118 1.879737 AAAAATACGGCGCCCAACCC 61.880 55.000 23.46 0.00 0.00 4.11
2615 6119 3.570822 AAATACGGCGCCCAACCCA 62.571 57.895 23.46 0.00 0.00 4.51
2616 6120 3.987954 AATACGGCGCCCAACCCAG 62.988 63.158 23.46 7.36 0.00 4.45
2626 6130 4.263572 CAACCCAGCGGTCCCACA 62.264 66.667 0.00 0.00 43.71 4.17
2627 6131 3.256960 AACCCAGCGGTCCCACAT 61.257 61.111 0.00 0.00 43.71 3.21
2628 6132 3.567579 AACCCAGCGGTCCCACATG 62.568 63.158 0.00 0.00 43.71 3.21
2630 6134 4.720902 CCAGCGGTCCCACATGCA 62.721 66.667 0.00 0.00 0.00 3.96
2631 6135 3.129502 CAGCGGTCCCACATGCAG 61.130 66.667 0.00 0.00 0.00 4.41
2634 6138 3.129502 CGGTCCCACATGCAGCAG 61.130 66.667 0.00 0.00 0.00 4.24
2635 6139 3.446570 GGTCCCACATGCAGCAGC 61.447 66.667 0.00 0.00 42.57 5.25
2636 6140 3.446570 GTCCCACATGCAGCAGCC 61.447 66.667 0.00 0.00 41.13 4.85
2637 6141 4.746309 TCCCACATGCAGCAGCCC 62.746 66.667 0.00 0.00 41.13 5.19
2649 6153 4.856801 CAGCCCGCCCGCATAAGT 62.857 66.667 0.00 0.00 0.00 2.24
2650 6154 4.547367 AGCCCGCCCGCATAAGTC 62.547 66.667 0.00 0.00 0.00 3.01
2659 6163 2.185867 GCATAAGTCGGCGTCCCA 59.814 61.111 6.85 0.00 0.00 4.37
2660 6164 1.448893 GCATAAGTCGGCGTCCCAA 60.449 57.895 6.85 0.00 0.00 4.12
2661 6165 1.022451 GCATAAGTCGGCGTCCCAAA 61.022 55.000 6.85 0.00 0.00 3.28
2662 6166 1.663695 CATAAGTCGGCGTCCCAAAT 58.336 50.000 6.85 0.00 0.00 2.32
2663 6167 2.828877 CATAAGTCGGCGTCCCAAATA 58.171 47.619 6.85 0.00 0.00 1.40
2664 6168 3.399330 CATAAGTCGGCGTCCCAAATAT 58.601 45.455 6.85 0.00 0.00 1.28
2665 6169 1.663695 AAGTCGGCGTCCCAAATATG 58.336 50.000 6.85 0.00 0.00 1.78
2666 6170 0.814010 AGTCGGCGTCCCAAATATGC 60.814 55.000 6.85 0.00 0.00 3.14
2667 6171 1.092921 GTCGGCGTCCCAAATATGCA 61.093 55.000 6.85 0.00 0.00 3.96
2668 6172 0.813610 TCGGCGTCCCAAATATGCAG 60.814 55.000 6.85 0.00 0.00 4.41
2669 6173 1.360192 GGCGTCCCAAATATGCAGC 59.640 57.895 0.00 0.00 0.00 5.25
2670 6174 1.103398 GGCGTCCCAAATATGCAGCT 61.103 55.000 0.00 0.00 0.00 4.24
2671 6175 0.308993 GCGTCCCAAATATGCAGCTC 59.691 55.000 0.00 0.00 0.00 4.09
2672 6176 0.947244 CGTCCCAAATATGCAGCTCC 59.053 55.000 0.00 0.00 0.00 4.70
2673 6177 0.947244 GTCCCAAATATGCAGCTCCG 59.053 55.000 0.00 0.00 0.00 4.63
2674 6178 0.819259 TCCCAAATATGCAGCTCCGC 60.819 55.000 0.00 0.00 0.00 5.54
2676 6180 0.309922 CCAAATATGCAGCTCCGCAG 59.690 55.000 4.91 0.00 46.99 5.18
2677 6181 0.317603 CAAATATGCAGCTCCGCAGC 60.318 55.000 4.91 0.00 46.99 5.25
2691 6195 3.718097 CAGCCCGCGTGCGTTAAA 61.718 61.111 8.18 0.00 37.81 1.52
2692 6196 3.419759 AGCCCGCGTGCGTTAAAG 61.420 61.111 8.18 0.00 37.81 1.85
2693 6197 3.719144 GCCCGCGTGCGTTAAAGT 61.719 61.111 13.70 0.00 37.81 2.66
2694 6198 2.940561 CCCGCGTGCGTTAAAGTT 59.059 55.556 13.70 0.00 37.81 2.66
2695 6199 1.899521 GCCCGCGTGCGTTAAAGTTA 61.900 55.000 13.70 0.00 37.81 2.24
2696 6200 0.179243 CCCGCGTGCGTTAAAGTTAC 60.179 55.000 13.70 0.00 37.81 2.50
2697 6201 0.507785 CCGCGTGCGTTAAAGTTACA 59.492 50.000 13.70 0.00 37.81 2.41
2698 6202 1.461237 CCGCGTGCGTTAAAGTTACAG 60.461 52.381 13.70 0.00 37.81 2.74
2699 6203 1.587991 GCGTGCGTTAAAGTTACAGC 58.412 50.000 0.00 0.00 0.00 4.40
2700 6204 1.193874 GCGTGCGTTAAAGTTACAGCT 59.806 47.619 0.00 0.00 0.00 4.24
2701 6205 2.349155 GCGTGCGTTAAAGTTACAGCTT 60.349 45.455 0.00 0.00 0.00 3.74
2702 6206 3.466836 CGTGCGTTAAAGTTACAGCTTC 58.533 45.455 0.00 0.00 0.00 3.86
2703 6207 3.466836 GTGCGTTAAAGTTACAGCTTCG 58.533 45.455 0.00 0.00 0.00 3.79
2704 6208 3.060070 GTGCGTTAAAGTTACAGCTTCGT 60.060 43.478 0.00 0.00 0.00 3.85
2705 6209 3.556775 TGCGTTAAAGTTACAGCTTCGTT 59.443 39.130 0.00 0.00 0.00 3.85
2706 6210 4.034279 TGCGTTAAAGTTACAGCTTCGTTT 59.966 37.500 0.00 0.00 0.00 3.60
2707 6211 4.965762 GCGTTAAAGTTACAGCTTCGTTTT 59.034 37.500 0.00 0.00 0.00 2.43
2708 6212 5.453266 GCGTTAAAGTTACAGCTTCGTTTTT 59.547 36.000 0.00 0.00 0.00 1.94
2709 6213 6.557171 GCGTTAAAGTTACAGCTTCGTTTTTG 60.557 38.462 0.00 0.00 0.00 2.44
2710 6214 6.466730 CGTTAAAGTTACAGCTTCGTTTTTGT 59.533 34.615 0.00 0.00 0.00 2.83
2711 6215 7.510896 CGTTAAAGTTACAGCTTCGTTTTTGTG 60.511 37.037 0.00 0.00 0.00 3.33
2712 6216 3.691498 AGTTACAGCTTCGTTTTTGTGC 58.309 40.909 0.00 0.00 0.00 4.57
2713 6217 2.376915 TACAGCTTCGTTTTTGTGCG 57.623 45.000 0.00 0.00 0.00 5.34
2714 6218 0.865639 ACAGCTTCGTTTTTGTGCGC 60.866 50.000 0.00 0.00 0.00 6.09
2715 6219 1.654137 AGCTTCGTTTTTGTGCGCG 60.654 52.632 0.00 0.00 0.00 6.86
2716 6220 2.829834 CTTCGTTTTTGTGCGCGC 59.170 55.556 27.26 27.26 0.00 6.86
2717 6221 1.654137 CTTCGTTTTTGTGCGCGCT 60.654 52.632 33.29 0.00 0.00 5.92
2718 6222 1.588305 CTTCGTTTTTGTGCGCGCTC 61.588 55.000 33.29 29.03 0.00 5.03
2719 6223 2.042520 TTCGTTTTTGTGCGCGCTCT 62.043 50.000 33.29 0.00 0.00 4.09
2720 6224 1.203065 CGTTTTTGTGCGCGCTCTA 59.797 52.632 33.29 22.82 0.00 2.43
2721 6225 0.179225 CGTTTTTGTGCGCGCTCTAT 60.179 50.000 33.29 0.00 0.00 1.98
2722 6226 1.724654 CGTTTTTGTGCGCGCTCTATT 60.725 47.619 33.29 0.00 0.00 1.73
2723 6227 2.315901 GTTTTTGTGCGCGCTCTATTT 58.684 42.857 33.29 0.00 0.00 1.40
2724 6228 2.697431 TTTTGTGCGCGCTCTATTTT 57.303 40.000 33.29 0.00 0.00 1.82
2725 6229 3.815337 TTTTGTGCGCGCTCTATTTTA 57.185 38.095 33.29 8.68 0.00 1.52
2726 6230 2.798834 TTGTGCGCGCTCTATTTTAC 57.201 45.000 33.29 19.34 0.00 2.01
2727 6231 0.643310 TGTGCGCGCTCTATTTTACG 59.357 50.000 33.29 0.00 0.00 3.18
2728 6232 0.043310 GTGCGCGCTCTATTTTACGG 60.043 55.000 33.29 0.00 0.00 4.02
2729 6233 0.458889 TGCGCGCTCTATTTTACGGT 60.459 50.000 33.29 0.00 0.00 4.83
2730 6234 0.648958 GCGCGCTCTATTTTACGGTT 59.351 50.000 26.67 0.00 0.00 4.44
2731 6235 1.061566 GCGCGCTCTATTTTACGGTTT 59.938 47.619 26.67 0.00 0.00 3.27
2732 6236 2.844651 GCGCGCTCTATTTTACGGTTTC 60.845 50.000 26.67 0.00 0.00 2.78
2733 6237 2.601763 CGCGCTCTATTTTACGGTTTCT 59.398 45.455 5.56 0.00 0.00 2.52
2734 6238 3.541516 CGCGCTCTATTTTACGGTTTCTG 60.542 47.826 5.56 0.00 0.00 3.02
2735 6239 3.784525 GCGCTCTATTTTACGGTTTCTGC 60.785 47.826 0.00 0.00 0.00 4.26
2736 6240 3.617263 CGCTCTATTTTACGGTTTCTGCT 59.383 43.478 0.00 0.00 0.00 4.24
2737 6241 4.492570 CGCTCTATTTTACGGTTTCTGCTG 60.493 45.833 0.00 0.00 0.00 4.41
2738 6242 4.201822 GCTCTATTTTACGGTTTCTGCTGG 60.202 45.833 0.00 0.00 0.00 4.85
2739 6243 5.155278 TCTATTTTACGGTTTCTGCTGGA 57.845 39.130 0.00 0.00 0.00 3.86
2740 6244 5.175859 TCTATTTTACGGTTTCTGCTGGAG 58.824 41.667 0.00 0.00 0.00 3.86
2741 6245 1.519408 TTTACGGTTTCTGCTGGAGC 58.481 50.000 0.00 0.00 42.50 4.70
2742 6246 0.669318 TTACGGTTTCTGCTGGAGCG 60.669 55.000 14.28 14.28 45.83 5.03
2743 6247 3.793144 CGGTTTCTGCTGGAGCGC 61.793 66.667 0.00 0.00 45.83 5.92
2744 6248 2.359230 GGTTTCTGCTGGAGCGCT 60.359 61.111 11.27 11.27 45.83 5.92
2745 6249 2.684843 GGTTTCTGCTGGAGCGCTG 61.685 63.158 18.48 0.22 45.83 5.18
2746 6250 3.052082 TTTCTGCTGGAGCGCTGC 61.052 61.111 23.36 23.36 45.83 5.25
2747 6251 3.541950 TTTCTGCTGGAGCGCTGCT 62.542 57.895 29.46 0.00 45.83 4.24
2748 6252 3.541950 TTCTGCTGGAGCGCTGCTT 62.542 57.895 29.46 0.00 45.83 3.91
2749 6253 3.054503 CTGCTGGAGCGCTGCTTT 61.055 61.111 29.46 0.00 45.83 3.51
2750 6254 2.595463 TGCTGGAGCGCTGCTTTT 60.595 55.556 29.46 0.00 45.83 2.27
2751 6255 2.138656 CTGCTGGAGCGCTGCTTTTT 62.139 55.000 29.46 0.00 45.83 1.94
2765 6269 2.549282 TTTTTGTCTCTCGCGCGC 59.451 55.556 27.95 23.91 0.00 6.86
2766 6270 1.954146 TTTTTGTCTCTCGCGCGCT 60.954 52.632 30.48 0.00 0.00 5.92
2767 6271 0.665068 TTTTTGTCTCTCGCGCGCTA 60.665 50.000 30.48 18.56 0.00 4.26
2768 6272 0.665068 TTTTGTCTCTCGCGCGCTAA 60.665 50.000 30.48 16.23 0.00 3.09
2769 6273 0.665068 TTTGTCTCTCGCGCGCTAAA 60.665 50.000 30.48 15.53 0.00 1.85
2770 6274 0.457853 TTGTCTCTCGCGCGCTAAAT 60.458 50.000 30.48 0.00 0.00 1.40
2771 6275 0.379316 TGTCTCTCGCGCGCTAAATA 59.621 50.000 30.48 5.52 0.00 1.40
2772 6276 1.046230 GTCTCTCGCGCGCTAAATAG 58.954 55.000 30.48 16.66 0.00 1.73
2773 6277 0.040336 TCTCTCGCGCGCTAAATAGG 60.040 55.000 30.48 11.83 0.00 2.57
2774 6278 1.609840 CTCTCGCGCGCTAAATAGGC 61.610 60.000 30.48 0.00 0.00 3.93
2775 6279 1.949133 CTCGCGCGCTAAATAGGCA 60.949 57.895 30.48 1.98 0.00 4.75
2776 6280 1.284982 CTCGCGCGCTAAATAGGCAT 61.285 55.000 30.48 0.00 0.00 4.40
2777 6281 0.878523 TCGCGCGCTAAATAGGCATT 60.879 50.000 30.48 0.00 0.00 3.56
2778 6282 0.041312 CGCGCGCTAAATAGGCATTT 60.041 50.000 30.48 0.00 38.02 2.32
2779 6283 1.596954 CGCGCGCTAAATAGGCATTTT 60.597 47.619 30.48 0.00 35.88 1.82
2780 6284 2.459934 GCGCGCTAAATAGGCATTTTT 58.540 42.857 26.67 0.00 35.88 1.94
2804 6308 3.345087 GCGTGCGGCTTATTAATCG 57.655 52.632 0.00 0.00 39.11 3.34
2808 6312 3.633774 GCGGCTTATTAATCGCGTC 57.366 52.632 5.77 0.00 38.82 5.19
2809 6313 1.137513 GCGGCTTATTAATCGCGTCT 58.862 50.000 5.77 0.00 38.82 4.18
2810 6314 1.136611 GCGGCTTATTAATCGCGTCTG 60.137 52.381 5.77 0.00 38.82 3.51
2811 6315 2.124903 CGGCTTATTAATCGCGTCTGT 58.875 47.619 5.77 0.00 0.00 3.41
2812 6316 2.538449 CGGCTTATTAATCGCGTCTGTT 59.462 45.455 5.77 0.00 0.00 3.16
2813 6317 3.601586 CGGCTTATTAATCGCGTCTGTTG 60.602 47.826 5.77 0.00 0.00 3.33
2814 6318 3.303132 GGCTTATTAATCGCGTCTGTTGG 60.303 47.826 5.77 0.00 0.00 3.77
2815 6319 3.554324 GCTTATTAATCGCGTCTGTTGGA 59.446 43.478 5.77 0.00 0.00 3.53
2816 6320 4.318121 GCTTATTAATCGCGTCTGTTGGAG 60.318 45.833 5.77 0.00 0.00 3.86
2817 6321 3.520290 ATTAATCGCGTCTGTTGGAGA 57.480 42.857 5.77 0.00 0.00 3.71
2818 6322 3.520290 TTAATCGCGTCTGTTGGAGAT 57.480 42.857 5.77 0.00 31.63 2.75
2819 6323 1.645034 AATCGCGTCTGTTGGAGATG 58.355 50.000 5.77 0.00 40.33 2.90
2824 6328 2.376808 CGTCTGTTGGAGATGCTCTT 57.623 50.000 0.00 0.00 30.78 2.85
2825 6329 3.510388 CGTCTGTTGGAGATGCTCTTA 57.490 47.619 0.00 0.00 30.78 2.10
2826 6330 3.849911 CGTCTGTTGGAGATGCTCTTAA 58.150 45.455 0.00 0.00 30.78 1.85
2827 6331 3.862267 CGTCTGTTGGAGATGCTCTTAAG 59.138 47.826 0.00 0.00 30.78 1.85
2828 6332 4.619394 CGTCTGTTGGAGATGCTCTTAAGT 60.619 45.833 1.63 0.00 30.78 2.24
2829 6333 5.393135 CGTCTGTTGGAGATGCTCTTAAGTA 60.393 44.000 1.63 0.00 30.78 2.24
2858 6362 4.634012 TTAGCTTCCTTACTTTCTGGCA 57.366 40.909 0.00 0.00 0.00 4.92
2870 6374 4.546570 ACTTTCTGGCAAGCGTTATTTTC 58.453 39.130 0.00 0.00 0.00 2.29
2871 6375 4.037446 ACTTTCTGGCAAGCGTTATTTTCA 59.963 37.500 0.00 0.00 0.00 2.69
2875 6379 4.742659 TCTGGCAAGCGTTATTTTCAAAAC 59.257 37.500 0.00 0.00 0.00 2.43
2877 6381 4.870426 TGGCAAGCGTTATTTTCAAAACAA 59.130 33.333 0.00 0.00 0.00 2.83
2904 6408 5.741388 CAGATTTCTGGCTAGCGTTATTT 57.259 39.130 9.00 0.00 40.20 1.40
2905 6409 6.124088 CAGATTTCTGGCTAGCGTTATTTT 57.876 37.500 9.00 0.00 40.20 1.82
2906 6410 6.555315 CAGATTTCTGGCTAGCGTTATTTTT 58.445 36.000 9.00 0.00 40.20 1.94
2949 6453 4.926238 CAGTTTTGCTAAGTCTCAGTCGAT 59.074 41.667 0.00 0.00 0.00 3.59
2977 6481 8.780846 AGACTTCGTTATATCTCAGTCGATAT 57.219 34.615 0.00 0.00 39.33 1.63
2979 6483 9.268255 GACTTCGTTATATCTCAGTCGATATTG 57.732 37.037 0.00 0.00 37.65 1.90
2980 6484 8.784994 ACTTCGTTATATCTCAGTCGATATTGT 58.215 33.333 0.00 0.00 37.65 2.71
3093 6597 1.003331 GTCGACTGAGATCTAGCCACG 60.003 57.143 8.70 0.00 0.00 4.94
3105 6609 9.692749 TGAGATCTAGCCACGTTTTTATTATAG 57.307 33.333 0.00 0.00 0.00 1.31
3148 6674 3.830178 TCACCTTAACATCGAGGTCTTCA 59.170 43.478 1.92 0.00 44.28 3.02
3149 6675 4.282449 TCACCTTAACATCGAGGTCTTCAA 59.718 41.667 1.92 0.00 44.28 2.69
3154 6680 2.767505 ACATCGAGGTCTTCAAACCAC 58.232 47.619 0.00 0.00 42.12 4.16
3171 6697 1.402720 CCACCAAATGACCAATGTCGC 60.403 52.381 0.00 0.00 44.86 5.19
3176 6702 1.453155 AATGACCAATGTCGCCAGTC 58.547 50.000 0.00 0.00 44.86 3.51
3249 6775 9.710979 TTATCGATAATAGCCGAAAAGTTTTTG 57.289 29.630 13.85 8.43 38.36 2.44
3273 6799 3.222603 CACATGCCCCTAATTAAGTCCC 58.777 50.000 0.00 0.00 0.00 4.46
3275 6801 3.270960 ACATGCCCCTAATTAAGTCCCAA 59.729 43.478 0.00 0.00 0.00 4.12
3292 6821 1.592081 CCAAAACCGTCGTCGTTGTTA 59.408 47.619 0.71 0.00 35.01 2.41
3322 6851 9.832445 CCTTATTTGGTCTAAACTCTTAGCATA 57.168 33.333 0.00 0.00 35.42 3.14
3414 6943 6.894654 TGATTGTTAGCTAATGGGAAATGGAA 59.105 34.615 9.88 0.00 0.00 3.53
3415 6944 6.524101 TTGTTAGCTAATGGGAAATGGAAC 57.476 37.500 9.88 0.00 0.00 3.62
3421 6950 0.684153 ATGGGAAATGGAACTGCCGG 60.684 55.000 0.00 0.00 40.66 6.13
3432 6961 1.164041 AACTGCCGGTTTGGTTCTCG 61.164 55.000 1.90 0.00 41.21 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 3209 0.764271 TCAACCAGGCATGTCTGTGA 59.236 50.000 24.99 19.52 33.14 3.58
53 3210 1.162698 CTCAACCAGGCATGTCTGTG 58.837 55.000 24.99 17.59 33.14 3.66
54 3211 0.037303 CCTCAACCAGGCATGTCTGT 59.963 55.000 24.99 11.12 34.56 3.41
68 3225 2.571653 CACCCTGAGAACCATACCTCAA 59.428 50.000 0.00 0.00 38.75 3.02
74 3231 1.913419 GAACCCACCCTGAGAACCATA 59.087 52.381 0.00 0.00 0.00 2.74
93 3250 2.891191 AAAACCATTCGCTAAGGGGA 57.109 45.000 6.61 0.00 40.97 4.81
101 3258 3.542310 GTCTCGCAAATAAAACCATTCGC 59.458 43.478 0.00 0.00 0.00 4.70
112 3269 1.745232 AATTGCCGGTCTCGCAAATA 58.255 45.000 1.90 0.00 36.56 1.40
113 3270 0.887933 AAATTGCCGGTCTCGCAAAT 59.112 45.000 1.90 0.00 36.56 2.32
116 3273 0.605319 AGAAAATTGCCGGTCTCGCA 60.605 50.000 1.90 0.00 34.56 5.10
119 3276 1.821216 TCCAGAAAATTGCCGGTCTC 58.179 50.000 1.90 0.00 0.00 3.36
144 3301 1.886542 GAAACCAAACGGCCTCTCATT 59.113 47.619 0.00 0.00 0.00 2.57
150 3307 2.200337 GCCTGAAACCAAACGGCCT 61.200 57.895 0.00 0.00 34.75 5.19
153 3310 1.165270 CTAGGCCTGAAACCAAACGG 58.835 55.000 17.99 0.00 0.00 4.44
154 3311 0.521735 GCTAGGCCTGAAACCAAACG 59.478 55.000 17.99 0.00 0.00 3.60
168 3325 5.404946 GCAATATTGTATGGCATTGCTAGG 58.595 41.667 16.61 0.00 46.15 3.02
187 3353 8.417273 AACTAACCTTATGTAAGTTTGGCAAT 57.583 30.769 0.00 0.00 0.00 3.56
191 3357 9.389570 CGAAAAACTAACCTTATGTAAGTTTGG 57.610 33.333 0.00 0.00 39.60 3.28
199 3365 7.881232 TCTCATTCCGAAAAACTAACCTTATGT 59.119 33.333 0.00 0.00 0.00 2.29
205 3371 4.142665 GGCTCTCATTCCGAAAAACTAACC 60.143 45.833 0.00 0.00 0.00 2.85
206 3372 4.454504 TGGCTCTCATTCCGAAAAACTAAC 59.545 41.667 0.00 0.00 0.00 2.34
211 3377 6.773976 AATTATGGCTCTCATTCCGAAAAA 57.226 33.333 0.00 0.00 37.30 1.94
213 3379 5.067674 CCAAATTATGGCTCTCATTCCGAAA 59.932 40.000 0.00 0.00 43.80 3.46
216 3382 4.494350 CCAAATTATGGCTCTCATTCCG 57.506 45.455 0.00 0.00 43.80 4.30
230 3396 7.466746 AGATTGTCTTAAGCTTGCCAAATTA 57.533 32.000 9.86 0.00 0.00 1.40
233 3399 5.789643 AAGATTGTCTTAAGCTTGCCAAA 57.210 34.783 9.86 0.00 34.42 3.28
237 3403 6.578919 GTGTGTTAAGATTGTCTTAAGCTTGC 59.421 38.462 9.86 0.00 46.15 4.01
262 3428 4.261994 CCCACATCCCACACACTTAAAAAG 60.262 45.833 0.00 0.00 0.00 2.27
270 3436 1.303317 GGTCCCACATCCCACACAC 60.303 63.158 0.00 0.00 0.00 3.82
273 3439 0.620410 CTAGGGTCCCACATCCCACA 60.620 60.000 11.55 0.00 45.64 4.17
274 3440 0.620700 ACTAGGGTCCCACATCCCAC 60.621 60.000 11.55 0.00 45.64 4.61
283 3449 1.861982 TCAAGCTACACTAGGGTCCC 58.138 55.000 0.00 0.00 0.00 4.46
296 3462 1.963515 GATGGGTGTTTGGTTCAAGCT 59.036 47.619 0.00 0.00 0.00 3.74
320 3502 6.803807 CCTAAGCTTAAGCAAGTTTGATCAAC 59.196 38.462 28.39 3.85 45.16 3.18
323 3505 6.072452 ACACCTAAGCTTAAGCAAGTTTGATC 60.072 38.462 28.39 0.00 45.16 2.92
350 3532 5.548406 TGAGGCTAAGTTTGTCTAAGGTTC 58.452 41.667 0.00 0.00 0.00 3.62
369 3552 2.971901 AGGGGTAGTTTGGTTTGAGG 57.028 50.000 0.00 0.00 0.00 3.86
382 3565 7.008021 ACAAATTCGTCTTAGTTTAGGGGTA 57.992 36.000 0.00 0.00 0.00 3.69
423 3606 1.447140 TACGTCACGGATGGCAAGC 60.447 57.895 0.35 0.00 0.00 4.01
435 3618 1.876799 CCTTGCCAATTGTGTACGTCA 59.123 47.619 4.43 0.00 0.00 4.35
596 3780 6.128769 GGATTTGCGGGTGTGTTAAAATAAAC 60.129 38.462 0.00 0.00 0.00 2.01
600 3785 3.576550 AGGATTTGCGGGTGTGTTAAAAT 59.423 39.130 0.00 0.00 0.00 1.82
639 4058 1.606903 ATACCGGCTAAGTCTCTCGG 58.393 55.000 0.00 0.00 45.42 4.63
667 4086 2.989840 CTGTGGTGACTTCGTCAATCTC 59.010 50.000 0.00 0.00 44.49 2.75
700 4119 0.251253 AGAGAAGACGTTCCCCTCGT 60.251 55.000 0.00 0.00 44.27 4.18
704 4123 1.258676 AGTGAGAGAAGACGTTCCCC 58.741 55.000 0.00 0.00 32.48 4.81
718 4139 7.520119 TTTACTATGATGCGTGTTTAGTGAG 57.480 36.000 0.00 0.00 0.00 3.51
760 4181 0.322322 TCCCGGTGCTCGTGTTATTT 59.678 50.000 0.00 0.00 37.11 1.40
776 4197 2.010544 GCCCACTAGCGTTTAACTCCC 61.011 57.143 0.00 0.00 0.00 4.30
780 4201 0.671472 ACGGCCCACTAGCGTTTAAC 60.671 55.000 0.00 0.00 0.00 2.01
789 4210 1.502690 ATGATTGGTACGGCCCACTA 58.497 50.000 0.00 0.00 33.14 2.74
808 4252 3.870633 AAAAACACGCAAACCAACCTA 57.129 38.095 0.00 0.00 0.00 3.08
952 4402 1.416049 GTACGCAGCGTGTGTGATG 59.584 57.895 30.67 0.00 41.73 3.07
1010 4464 2.688046 TAGCACGCACGCAAACAACG 62.688 55.000 0.00 0.00 0.00 4.10
1309 4769 1.153549 GTCGGCGCAGAGGAAGAAT 60.154 57.895 11.47 0.00 0.00 2.40
1310 4770 2.261671 GTCGGCGCAGAGGAAGAA 59.738 61.111 11.47 0.00 0.00 2.52
1330 4790 1.074951 GGCCTGTAGGTTGTTGCCT 59.925 57.895 0.00 0.00 42.43 4.75
1335 4795 2.032071 GCGTGGCCTGTAGGTTGT 59.968 61.111 3.32 0.00 37.57 3.32
1338 4798 3.760035 CGAGCGTGGCCTGTAGGT 61.760 66.667 3.32 0.00 37.57 3.08
1445 4905 4.160635 GTGCATGTACGTGGCGGC 62.161 66.667 16.68 0.00 0.00 6.53
1589 5049 3.554692 CTAGCTGCGCCGTTTCCG 61.555 66.667 4.18 0.00 0.00 4.30
1591 5051 1.710339 CTTCTAGCTGCGCCGTTTC 59.290 57.895 4.18 0.00 0.00 2.78
1592 5052 2.391389 GCTTCTAGCTGCGCCGTTT 61.391 57.895 4.18 0.00 38.45 3.60
1593 5053 2.815647 GCTTCTAGCTGCGCCGTT 60.816 61.111 4.18 0.00 38.45 4.44
1594 5054 3.997064 CTGCTTCTAGCTGCGCCGT 62.997 63.158 4.18 0.00 42.97 5.68
1602 5062 2.458951 CACATCGACTCTGCTTCTAGC 58.541 52.381 0.00 0.00 42.82 3.42
1646 5106 4.803426 AGCCGAGGAAGAAGCGCG 62.803 66.667 0.00 0.00 0.00 6.86
2119 5597 1.541233 CGAGAACCTGGCTTGTTGACT 60.541 52.381 0.00 0.00 0.00 3.41
2123 5601 4.800554 CCGAGAACCTGGCTTGTT 57.199 55.556 0.00 0.00 0.00 2.83
2150 5628 1.222115 GCACGCGATGATACCCTTCC 61.222 60.000 15.93 0.00 0.00 3.46
2373 5851 5.474876 AGGACTTGAATAAAGGTTCTTGCAG 59.525 40.000 0.00 0.00 40.51 4.41
2410 5904 0.109272 TCATCGGAGACTTCACGCAC 60.109 55.000 0.00 0.00 42.51 5.34
2437 5931 4.207019 GCTTTGGTTCAAGTTTCATTCACG 59.793 41.667 0.00 0.00 0.00 4.35
2462 5956 5.370679 TCACCTCACTTTACAACCCTTAAC 58.629 41.667 0.00 0.00 0.00 2.01
2470 5964 5.009610 GCCAGAAAATCACCTCACTTTACAA 59.990 40.000 0.00 0.00 0.00 2.41
2484 5978 4.100189 TCAGGACTAGCTAGCCAGAAAATC 59.900 45.833 26.12 13.54 0.00 2.17
2511 6014 6.891908 TCTAGCAGGCTCAAAAGGATTAAAAT 59.108 34.615 0.00 0.00 0.00 1.82
2540 6044 5.939883 ACACTATTGCAAGATGCTCTAACAA 59.060 36.000 4.94 0.00 45.31 2.83
2546 6050 6.385537 CAAAAACACTATTGCAAGATGCTC 57.614 37.500 4.94 0.00 45.31 4.26
2555 6059 1.382088 GACGCGCAAAAACACTATTGC 59.618 47.619 5.73 0.58 46.45 3.56
2556 6060 1.637086 CGACGCGCAAAAACACTATTG 59.363 47.619 5.73 0.00 0.00 1.90
2557 6061 1.399215 CCGACGCGCAAAAACACTATT 60.399 47.619 5.73 0.00 0.00 1.73
2558 6062 0.165079 CCGACGCGCAAAAACACTAT 59.835 50.000 5.73 0.00 0.00 2.12
2559 6063 0.875040 TCCGACGCGCAAAAACACTA 60.875 50.000 5.73 0.00 0.00 2.74
2560 6064 2.101209 CTCCGACGCGCAAAAACACT 62.101 55.000 5.73 0.00 0.00 3.55
2561 6065 1.721133 CTCCGACGCGCAAAAACAC 60.721 57.895 5.73 0.00 0.00 3.32
2562 6066 2.629210 CTCCGACGCGCAAAAACA 59.371 55.556 5.73 0.00 0.00 2.83
2563 6067 2.127383 CCTCCGACGCGCAAAAAC 60.127 61.111 5.73 0.00 0.00 2.43
2564 6068 4.020378 GCCTCCGACGCGCAAAAA 62.020 61.111 5.73 0.00 0.00 1.94
2565 6069 4.980805 AGCCTCCGACGCGCAAAA 62.981 61.111 5.73 0.00 0.00 2.44
2566 6070 3.576932 TAAGCCTCCGACGCGCAAA 62.577 57.895 5.73 0.00 0.00 3.68
2567 6071 4.058732 TAAGCCTCCGACGCGCAA 62.059 61.111 5.73 0.00 0.00 4.85
2568 6072 4.789075 GTAAGCCTCCGACGCGCA 62.789 66.667 5.73 0.00 0.00 6.09
2570 6074 4.124351 TGGTAAGCCTCCGACGCG 62.124 66.667 3.53 3.53 35.27 6.01
2571 6075 2.202756 CTGGTAAGCCTCCGACGC 60.203 66.667 0.00 0.00 35.27 5.19
2572 6076 1.433879 CTCTGGTAAGCCTCCGACG 59.566 63.158 0.00 0.00 35.27 5.12
2573 6077 1.817209 CCTCTGGTAAGCCTCCGAC 59.183 63.158 0.00 0.00 35.27 4.79
2574 6078 2.058595 GCCTCTGGTAAGCCTCCGA 61.059 63.158 0.00 0.00 35.27 4.55
2575 6079 2.359169 TGCCTCTGGTAAGCCTCCG 61.359 63.158 0.00 0.00 35.27 4.63
2576 6080 1.222113 GTGCCTCTGGTAAGCCTCC 59.778 63.158 0.00 0.00 35.27 4.30
2577 6081 0.324943 TTGTGCCTCTGGTAAGCCTC 59.675 55.000 0.00 0.00 35.27 4.70
2578 6082 0.771127 TTTGTGCCTCTGGTAAGCCT 59.229 50.000 0.00 0.00 35.27 4.58
2579 6083 1.616159 TTTTGTGCCTCTGGTAAGCC 58.384 50.000 0.00 0.00 0.00 4.35
2580 6084 3.942130 ATTTTTGTGCCTCTGGTAAGC 57.058 42.857 0.00 0.00 0.00 3.09
2581 6085 4.142687 CCGTATTTTTGTGCCTCTGGTAAG 60.143 45.833 0.00 0.00 0.00 2.34
2582 6086 3.754323 CCGTATTTTTGTGCCTCTGGTAA 59.246 43.478 0.00 0.00 0.00 2.85
2583 6087 3.340034 CCGTATTTTTGTGCCTCTGGTA 58.660 45.455 0.00 0.00 0.00 3.25
2584 6088 2.159382 CCGTATTTTTGTGCCTCTGGT 58.841 47.619 0.00 0.00 0.00 4.00
2585 6089 1.135402 GCCGTATTTTTGTGCCTCTGG 60.135 52.381 0.00 0.00 0.00 3.86
2586 6090 1.465689 CGCCGTATTTTTGTGCCTCTG 60.466 52.381 0.00 0.00 0.00 3.35
2587 6091 0.802494 CGCCGTATTTTTGTGCCTCT 59.198 50.000 0.00 0.00 0.00 3.69
2588 6092 0.796870 GCGCCGTATTTTTGTGCCTC 60.797 55.000 0.00 0.00 0.00 4.70
2589 6093 1.211709 GCGCCGTATTTTTGTGCCT 59.788 52.632 0.00 0.00 0.00 4.75
2590 6094 3.761995 GCGCCGTATTTTTGTGCC 58.238 55.556 0.00 0.00 0.00 5.01
2591 6095 1.803922 GGGCGCCGTATTTTTGTGC 60.804 57.895 22.54 0.00 34.86 4.57
2592 6096 0.039074 TTGGGCGCCGTATTTTTGTG 60.039 50.000 22.54 0.00 0.00 3.33
2593 6097 0.038983 GTTGGGCGCCGTATTTTTGT 60.039 50.000 22.54 0.00 0.00 2.83
2594 6098 0.734597 GGTTGGGCGCCGTATTTTTG 60.735 55.000 22.54 0.00 0.00 2.44
2595 6099 1.587568 GGTTGGGCGCCGTATTTTT 59.412 52.632 22.54 0.00 0.00 1.94
2596 6100 2.344981 GGGTTGGGCGCCGTATTTT 61.345 57.895 22.54 0.00 0.00 1.82
2597 6101 2.752640 GGGTTGGGCGCCGTATTT 60.753 61.111 22.54 0.00 0.00 1.40
2598 6102 3.987954 CTGGGTTGGGCGCCGTATT 62.988 63.158 22.54 0.00 0.00 1.89
2599 6103 4.483243 CTGGGTTGGGCGCCGTAT 62.483 66.667 22.54 0.00 0.00 3.06
2613 6117 4.720902 TGCATGTGGGACCGCTGG 62.721 66.667 3.31 0.00 0.00 4.85
2614 6118 3.129502 CTGCATGTGGGACCGCTG 61.130 66.667 3.31 0.99 0.00 5.18
2617 6121 3.129502 CTGCTGCATGTGGGACCG 61.130 66.667 1.31 0.00 0.00 4.79
2618 6122 3.446570 GCTGCTGCATGTGGGACC 61.447 66.667 11.11 0.00 39.41 4.46
2619 6123 3.446570 GGCTGCTGCATGTGGGAC 61.447 66.667 17.89 0.00 41.91 4.46
2620 6124 4.746309 GGGCTGCTGCATGTGGGA 62.746 66.667 17.89 0.00 41.91 4.37
2632 6136 4.856801 ACTTATGCGGGCGGGCTG 62.857 66.667 5.93 5.93 0.00 4.85
2633 6137 4.547367 GACTTATGCGGGCGGGCT 62.547 66.667 0.26 0.00 0.00 5.19
2642 6146 1.022451 TTTGGGACGCCGACTTATGC 61.022 55.000 0.00 0.00 0.00 3.14
2643 6147 1.663695 ATTTGGGACGCCGACTTATG 58.336 50.000 0.00 0.00 0.00 1.90
2644 6148 3.399330 CATATTTGGGACGCCGACTTAT 58.601 45.455 0.00 0.00 0.00 1.73
2645 6149 2.828877 CATATTTGGGACGCCGACTTA 58.171 47.619 0.00 0.00 0.00 2.24
2646 6150 1.663695 CATATTTGGGACGCCGACTT 58.336 50.000 0.00 0.00 0.00 3.01
2647 6151 0.814010 GCATATTTGGGACGCCGACT 60.814 55.000 0.00 0.00 0.00 4.18
2648 6152 1.092921 TGCATATTTGGGACGCCGAC 61.093 55.000 0.00 0.00 0.00 4.79
2649 6153 0.813610 CTGCATATTTGGGACGCCGA 60.814 55.000 0.00 0.00 0.00 5.54
2650 6154 1.648720 CTGCATATTTGGGACGCCG 59.351 57.895 0.00 0.00 0.00 6.46
2651 6155 1.103398 AGCTGCATATTTGGGACGCC 61.103 55.000 1.02 0.00 0.00 5.68
2652 6156 0.308993 GAGCTGCATATTTGGGACGC 59.691 55.000 1.02 0.00 0.00 5.19
2653 6157 0.947244 GGAGCTGCATATTTGGGACG 59.053 55.000 0.00 0.00 0.00 4.79
2654 6158 0.947244 CGGAGCTGCATATTTGGGAC 59.053 55.000 5.91 0.00 0.00 4.46
2655 6159 3.402186 CGGAGCTGCATATTTGGGA 57.598 52.632 5.91 0.00 0.00 4.37
2674 6178 3.645157 CTTTAACGCACGCGGGCTG 62.645 63.158 32.88 25.98 44.69 4.85
2675 6179 3.419759 CTTTAACGCACGCGGGCT 61.420 61.111 32.88 16.96 44.69 5.19
2676 6180 1.899521 TAACTTTAACGCACGCGGGC 61.900 55.000 26.66 26.66 44.69 6.13
2677 6181 0.179243 GTAACTTTAACGCACGCGGG 60.179 55.000 16.70 7.92 44.69 6.13
2678 6182 0.507785 TGTAACTTTAACGCACGCGG 59.492 50.000 16.70 0.00 44.69 6.46
2679 6183 1.848275 CTGTAACTTTAACGCACGCG 58.152 50.000 10.36 10.36 46.03 6.01
2680 6184 1.193874 AGCTGTAACTTTAACGCACGC 59.806 47.619 0.00 0.00 0.00 5.34
2681 6185 3.466836 GAAGCTGTAACTTTAACGCACG 58.533 45.455 0.00 0.00 0.00 5.34
2682 6186 3.060070 ACGAAGCTGTAACTTTAACGCAC 60.060 43.478 0.00 0.00 0.00 5.34
2683 6187 3.125316 ACGAAGCTGTAACTTTAACGCA 58.875 40.909 0.00 0.00 0.00 5.24
2684 6188 3.783111 ACGAAGCTGTAACTTTAACGC 57.217 42.857 0.00 0.00 0.00 4.84
2685 6189 6.466730 ACAAAAACGAAGCTGTAACTTTAACG 59.533 34.615 0.00 0.00 0.00 3.18
2686 6190 7.597441 CACAAAAACGAAGCTGTAACTTTAAC 58.403 34.615 0.00 0.00 0.00 2.01
2687 6191 6.251801 GCACAAAAACGAAGCTGTAACTTTAA 59.748 34.615 0.00 0.00 0.00 1.52
2688 6192 5.740099 GCACAAAAACGAAGCTGTAACTTTA 59.260 36.000 0.00 0.00 0.00 1.85
2689 6193 4.561213 GCACAAAAACGAAGCTGTAACTTT 59.439 37.500 0.00 0.00 0.00 2.66
2690 6194 4.102649 GCACAAAAACGAAGCTGTAACTT 58.897 39.130 0.00 0.00 0.00 2.66
2691 6195 3.691498 GCACAAAAACGAAGCTGTAACT 58.309 40.909 0.00 0.00 0.00 2.24
2692 6196 2.462565 CGCACAAAAACGAAGCTGTAAC 59.537 45.455 0.00 0.00 0.00 2.50
2693 6197 2.710760 CGCACAAAAACGAAGCTGTAA 58.289 42.857 0.00 0.00 0.00 2.41
2694 6198 1.595976 GCGCACAAAAACGAAGCTGTA 60.596 47.619 0.30 0.00 0.00 2.74
2695 6199 0.865639 GCGCACAAAAACGAAGCTGT 60.866 50.000 0.30 0.00 0.00 4.40
2696 6200 1.839407 GCGCACAAAAACGAAGCTG 59.161 52.632 0.30 0.00 0.00 4.24
2697 6201 1.654137 CGCGCACAAAAACGAAGCT 60.654 52.632 8.75 0.00 0.00 3.74
2698 6202 2.829834 CGCGCACAAAAACGAAGC 59.170 55.556 8.75 0.00 0.00 3.86
2699 6203 1.588305 GAGCGCGCACAAAAACGAAG 61.588 55.000 35.10 0.00 0.00 3.79
2700 6204 1.652930 GAGCGCGCACAAAAACGAA 60.653 52.632 35.10 0.00 0.00 3.85
2701 6205 1.216298 TAGAGCGCGCACAAAAACGA 61.216 50.000 35.10 8.40 0.00 3.85
2702 6206 0.179225 ATAGAGCGCGCACAAAAACG 60.179 50.000 35.10 0.00 0.00 3.60
2703 6207 1.963747 AATAGAGCGCGCACAAAAAC 58.036 45.000 35.10 14.26 0.00 2.43
2704 6208 2.697431 AAATAGAGCGCGCACAAAAA 57.303 40.000 35.10 14.22 0.00 1.94
2705 6209 2.697431 AAAATAGAGCGCGCACAAAA 57.303 40.000 35.10 16.86 0.00 2.44
2706 6210 2.473212 CGTAAAATAGAGCGCGCACAAA 60.473 45.455 35.10 19.54 0.00 2.83
2707 6211 1.059979 CGTAAAATAGAGCGCGCACAA 59.940 47.619 35.10 18.00 0.00 3.33
2708 6212 0.643310 CGTAAAATAGAGCGCGCACA 59.357 50.000 35.10 18.05 0.00 4.57
2709 6213 0.043310 CCGTAAAATAGAGCGCGCAC 60.043 55.000 35.10 28.25 0.00 5.34
2710 6214 0.458889 ACCGTAAAATAGAGCGCGCA 60.459 50.000 35.10 13.97 0.00 6.09
2711 6215 0.648958 AACCGTAAAATAGAGCGCGC 59.351 50.000 26.66 26.66 0.00 6.86
2712 6216 2.601763 AGAAACCGTAAAATAGAGCGCG 59.398 45.455 0.00 0.00 0.00 6.86
2713 6217 3.784525 GCAGAAACCGTAAAATAGAGCGC 60.785 47.826 0.00 0.00 0.00 5.92
2714 6218 3.617263 AGCAGAAACCGTAAAATAGAGCG 59.383 43.478 0.00 0.00 0.00 5.03
2715 6219 4.201822 CCAGCAGAAACCGTAAAATAGAGC 60.202 45.833 0.00 0.00 0.00 4.09
2716 6220 5.175859 TCCAGCAGAAACCGTAAAATAGAG 58.824 41.667 0.00 0.00 0.00 2.43
2717 6221 5.155278 TCCAGCAGAAACCGTAAAATAGA 57.845 39.130 0.00 0.00 0.00 1.98
2718 6222 4.201822 GCTCCAGCAGAAACCGTAAAATAG 60.202 45.833 0.00 0.00 41.59 1.73
2719 6223 3.687698 GCTCCAGCAGAAACCGTAAAATA 59.312 43.478 0.00 0.00 41.59 1.40
2720 6224 2.488153 GCTCCAGCAGAAACCGTAAAAT 59.512 45.455 0.00 0.00 41.59 1.82
2721 6225 1.877443 GCTCCAGCAGAAACCGTAAAA 59.123 47.619 0.00 0.00 41.59 1.52
2722 6226 1.519408 GCTCCAGCAGAAACCGTAAA 58.481 50.000 0.00 0.00 41.59 2.01
2723 6227 0.669318 CGCTCCAGCAGAAACCGTAA 60.669 55.000 0.00 0.00 42.21 3.18
2724 6228 1.080093 CGCTCCAGCAGAAACCGTA 60.080 57.895 0.00 0.00 42.21 4.02
2725 6229 2.357517 CGCTCCAGCAGAAACCGT 60.358 61.111 0.00 0.00 42.21 4.83
2726 6230 3.793144 GCGCTCCAGCAGAAACCG 61.793 66.667 0.00 0.00 42.21 4.44
2727 6231 2.359230 AGCGCTCCAGCAGAAACC 60.359 61.111 2.64 0.00 42.21 3.27
2728 6232 2.866028 CAGCGCTCCAGCAGAAAC 59.134 61.111 7.13 0.00 42.21 2.78
2729 6233 3.052082 GCAGCGCTCCAGCAGAAA 61.052 61.111 7.13 0.00 42.21 2.52
2730 6234 3.541950 AAGCAGCGCTCCAGCAGAA 62.542 57.895 19.00 0.00 38.25 3.02
2731 6235 3.541950 AAAGCAGCGCTCCAGCAGA 62.542 57.895 19.00 0.00 38.25 4.26
2732 6236 2.138656 AAAAAGCAGCGCTCCAGCAG 62.139 55.000 19.00 3.41 38.25 4.24
2733 6237 2.195567 AAAAAGCAGCGCTCCAGCA 61.196 52.632 19.00 0.00 38.25 4.41
2734 6238 2.647297 AAAAAGCAGCGCTCCAGC 59.353 55.556 7.13 8.91 38.25 4.85
2748 6252 0.665068 TAGCGCGCGAGAGACAAAAA 60.665 50.000 37.18 1.77 0.00 1.94
2749 6253 0.665068 TTAGCGCGCGAGAGACAAAA 60.665 50.000 37.18 10.79 0.00 2.44
2750 6254 0.665068 TTTAGCGCGCGAGAGACAAA 60.665 50.000 37.18 18.69 0.00 2.83
2751 6255 0.457853 ATTTAGCGCGCGAGAGACAA 60.458 50.000 37.18 16.34 0.00 3.18
2752 6256 0.379316 TATTTAGCGCGCGAGAGACA 59.621 50.000 37.18 11.89 0.00 3.41
2753 6257 1.046230 CTATTTAGCGCGCGAGAGAC 58.954 55.000 37.18 15.96 0.00 3.36
2754 6258 0.040336 CCTATTTAGCGCGCGAGAGA 60.040 55.000 37.18 15.87 0.00 3.10
2755 6259 1.609840 GCCTATTTAGCGCGCGAGAG 61.610 60.000 37.18 19.04 0.00 3.20
2756 6260 1.660575 GCCTATTTAGCGCGCGAGA 60.661 57.895 37.18 17.25 0.00 4.04
2757 6261 1.284982 ATGCCTATTTAGCGCGCGAG 61.285 55.000 37.18 20.66 0.00 5.03
2758 6262 0.878523 AATGCCTATTTAGCGCGCGA 60.879 50.000 37.18 19.65 0.00 5.87
2759 6263 0.041312 AAATGCCTATTTAGCGCGCG 60.041 50.000 28.44 28.44 34.81 6.86
2760 6264 2.119671 AAAATGCCTATTTAGCGCGC 57.880 45.000 26.66 26.66 35.50 6.86
2786 6290 0.721483 GCGATTAATAAGCCGCACGC 60.721 55.000 12.75 6.32 46.04 5.34
2787 6291 0.448861 CGCGATTAATAAGCCGCACG 60.449 55.000 16.46 3.05 46.99 5.34
2788 6292 0.580104 ACGCGATTAATAAGCCGCAC 59.420 50.000 15.93 0.00 46.99 5.34
2789 6293 0.856641 GACGCGATTAATAAGCCGCA 59.143 50.000 15.93 0.00 46.99 5.69
2790 6294 1.136611 CAGACGCGATTAATAAGCCGC 60.137 52.381 15.93 8.71 43.68 6.53
2791 6295 2.124903 ACAGACGCGATTAATAAGCCG 58.875 47.619 15.93 0.80 0.00 5.52
2792 6296 3.303132 CCAACAGACGCGATTAATAAGCC 60.303 47.826 15.93 0.00 0.00 4.35
2793 6297 3.554324 TCCAACAGACGCGATTAATAAGC 59.446 43.478 15.93 5.56 0.00 3.09
2794 6298 5.041287 TCTCCAACAGACGCGATTAATAAG 58.959 41.667 15.93 0.95 0.00 1.73
2795 6299 5.001237 TCTCCAACAGACGCGATTAATAA 57.999 39.130 15.93 0.00 0.00 1.40
2796 6300 4.642445 TCTCCAACAGACGCGATTAATA 57.358 40.909 15.93 0.00 0.00 0.98
2797 6301 3.520290 TCTCCAACAGACGCGATTAAT 57.480 42.857 15.93 0.00 0.00 1.40
2798 6302 3.186909 CATCTCCAACAGACGCGATTAA 58.813 45.455 15.93 0.00 32.26 1.40
2799 6303 2.809446 CATCTCCAACAGACGCGATTA 58.191 47.619 15.93 0.00 32.26 1.75
2800 6304 1.645034 CATCTCCAACAGACGCGATT 58.355 50.000 15.93 0.00 32.26 3.34
2801 6305 0.807667 GCATCTCCAACAGACGCGAT 60.808 55.000 15.93 0.00 28.87 4.58
2802 6306 1.446099 GCATCTCCAACAGACGCGA 60.446 57.895 15.93 0.00 28.87 5.87
2803 6307 1.416813 GAGCATCTCCAACAGACGCG 61.417 60.000 3.53 3.53 45.48 6.01
2804 6308 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
2841 6345 2.160417 CGCTTGCCAGAAAGTAAGGAAG 59.840 50.000 0.00 0.00 0.00 3.46
2854 6358 4.433615 TGTTTTGAAAATAACGCTTGCCA 58.566 34.783 0.00 0.00 0.00 4.92
2877 6381 3.821033 ACGCTAGCCAGAAATCTGTTTTT 59.179 39.130 9.66 0.00 42.27 1.94
2882 6386 5.741388 AAATAACGCTAGCCAGAAATCTG 57.259 39.130 9.66 3.37 43.40 2.90
2883 6387 6.759497 AAAAATAACGCTAGCCAGAAATCT 57.241 33.333 9.66 0.00 0.00 2.40
2905 6409 8.700439 AACTGTTATACTCTGGGCTTTAAAAA 57.300 30.769 0.00 0.00 0.00 1.94
2906 6410 8.700439 AAACTGTTATACTCTGGGCTTTAAAA 57.300 30.769 0.00 0.00 0.00 1.52
2907 6411 8.573035 CAAAACTGTTATACTCTGGGCTTTAAA 58.427 33.333 0.00 0.00 0.00 1.52
2908 6412 7.308951 GCAAAACTGTTATACTCTGGGCTTTAA 60.309 37.037 0.00 0.00 0.00 1.52
2909 6413 6.150474 GCAAAACTGTTATACTCTGGGCTTTA 59.850 38.462 0.00 0.00 0.00 1.85
2910 6414 5.048013 GCAAAACTGTTATACTCTGGGCTTT 60.048 40.000 0.00 0.00 0.00 3.51
2911 6415 4.459337 GCAAAACTGTTATACTCTGGGCTT 59.541 41.667 0.00 0.00 0.00 4.35
2912 6416 4.010349 GCAAAACTGTTATACTCTGGGCT 58.990 43.478 0.00 0.00 0.00 5.19
2913 6417 4.010349 AGCAAAACTGTTATACTCTGGGC 58.990 43.478 0.00 0.00 0.00 5.36
2914 6418 6.879458 ACTTAGCAAAACTGTTATACTCTGGG 59.121 38.462 0.00 0.00 0.00 4.45
2915 6419 7.819900 AGACTTAGCAAAACTGTTATACTCTGG 59.180 37.037 0.00 0.00 0.00 3.86
2916 6420 8.764524 AGACTTAGCAAAACTGTTATACTCTG 57.235 34.615 0.00 0.00 0.00 3.35
2917 6421 8.585881 TGAGACTTAGCAAAACTGTTATACTCT 58.414 33.333 0.00 0.00 0.00 3.24
2918 6422 8.758633 TGAGACTTAGCAAAACTGTTATACTC 57.241 34.615 0.00 0.00 0.00 2.59
2919 6423 8.368668 ACTGAGACTTAGCAAAACTGTTATACT 58.631 33.333 0.00 0.00 0.00 2.12
2920 6424 8.535690 ACTGAGACTTAGCAAAACTGTTATAC 57.464 34.615 0.00 0.00 0.00 1.47
2949 6453 6.537660 TCGACTGAGATATAACGAAGTCTCAA 59.462 38.462 12.78 0.00 45.00 3.02
2977 6481 9.241919 TCTTCATGCAAGATAAAAGGAATACAA 57.758 29.630 0.00 0.00 36.08 2.41
3122 6626 5.420409 AGACCTCGATGTTAAGGTGATTTC 58.580 41.667 0.00 0.00 45.93 2.17
3126 6630 3.830178 TGAAGACCTCGATGTTAAGGTGA 59.170 43.478 0.00 0.00 45.93 4.02
3148 6674 3.243704 CGACATTGGTCATTTGGTGGTTT 60.244 43.478 0.00 0.00 44.54 3.27
3149 6675 2.295909 CGACATTGGTCATTTGGTGGTT 59.704 45.455 0.00 0.00 44.54 3.67
3154 6680 0.887247 TGGCGACATTGGTCATTTGG 59.113 50.000 0.00 0.00 44.54 3.28
3171 6697 3.349927 ACAATGACACATCCATGACTGG 58.650 45.455 0.00 0.00 44.64 4.00
3176 6702 1.064505 GGCGACAATGACACATCCATG 59.935 52.381 0.00 0.00 0.00 3.66
3182 6708 1.163420 AAAGCGGCGACAATGACACA 61.163 50.000 12.98 0.00 0.00 3.72
3249 6775 3.023832 ACTTAATTAGGGGCATGTGCAC 58.976 45.455 10.75 10.75 45.53 4.57
3273 6799 2.994716 TAACAACGACGACGGTTTTG 57.005 45.000 12.58 9.58 44.46 2.44
3275 6801 3.059665 GGATTTAACAACGACGACGGTTT 60.060 43.478 12.58 5.28 44.46 3.27
3368 6897 8.792633 CAATCACCCGTTGAATACCATTATTAT 58.207 33.333 0.00 0.00 37.92 1.28
3375 6904 3.426787 ACAATCACCCGTTGAATACCA 57.573 42.857 0.00 0.00 37.92 3.25
3384 6913 3.541632 CCATTAGCTAACAATCACCCGT 58.458 45.455 8.70 0.00 0.00 5.28
3414 6943 1.597027 CGAGAACCAAACCGGCAGT 60.597 57.895 0.00 0.00 39.03 4.40
3415 6944 0.882927 TTCGAGAACCAAACCGGCAG 60.883 55.000 0.00 0.00 39.03 4.85
3421 6950 1.070108 GCTCCGTTTCGAGAACCAAAC 60.070 52.381 5.33 0.00 30.97 2.93
3432 6961 1.964448 CCCCCTTTTGCTCCGTTTC 59.036 57.895 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.