Multiple sequence alignment - TraesCS2D01G593500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G593500 chr2D 100.000 3025 0 0 1 3025 647976343 647973319 0.000000e+00 5587.0
1 TraesCS2D01G593500 chr2D 99.225 645 5 0 1 645 636434305 636433661 0.000000e+00 1164.0
2 TraesCS2D01G593500 chr2D 99.224 644 5 0 1 644 616369840 616370483 0.000000e+00 1162.0
3 TraesCS2D01G593500 chr2D 86.853 753 81 10 1266 2011 631307119 631307860 0.000000e+00 826.0
4 TraesCS2D01G593500 chr2D 88.435 147 16 1 2542 2687 645066411 645066265 3.100000e-40 176.0
5 TraesCS2D01G593500 chrUn 89.868 1510 48 32 730 2193 31352194 31353644 0.000000e+00 1844.0
6 TraesCS2D01G593500 chrUn 92.846 615 42 2 2207 2821 31353744 31354356 0.000000e+00 891.0
7 TraesCS2D01G593500 chrUn 86.890 656 77 7 1416 2069 104052831 104052183 0.000000e+00 726.0
8 TraesCS2D01G593500 chrUn 86.585 656 79 7 1416 2069 76957270 76957918 0.000000e+00 715.0
9 TraesCS2D01G593500 chrUn 95.000 120 6 0 2821 2940 31367592 31367711 3.980000e-44 189.0
10 TraesCS2D01G593500 chrUn 86.014 143 20 0 1262 1404 104052953 104052811 1.450000e-33 154.0
11 TraesCS2D01G593500 chrUn 84.672 137 21 0 1262 1398 76957148 76957284 1.460000e-28 137.0
12 TraesCS2D01G593500 chrUn 86.441 118 6 4 2915 3025 31368005 31368119 1.470000e-23 121.0
13 TraesCS2D01G593500 chr6D 99.380 645 4 0 1 645 542323 542967 0.000000e+00 1170.0
14 TraesCS2D01G593500 chr6D 99.225 645 5 0 1 645 378393754 378394398 0.000000e+00 1164.0
15 TraesCS2D01G593500 chr6D 99.225 645 5 0 1 645 454972155 454971511 0.000000e+00 1164.0
16 TraesCS2D01G593500 chr6D 87.622 307 25 6 2100 2396 31635103 31634800 8.030000e-91 344.0
17 TraesCS2D01G593500 chr3D 99.225 645 5 0 1 645 106327583 106328227 0.000000e+00 1164.0
18 TraesCS2D01G593500 chr3D 99.225 645 4 1 1 645 500438426 500439069 0.000000e+00 1162.0
19 TraesCS2D01G593500 chr3D 91.304 46 3 1 664 708 556607852 556607897 9.060000e-06 62.1
20 TraesCS2D01G593500 chr1D 99.224 644 5 0 1 644 408947311 408946668 0.000000e+00 1162.0
21 TraesCS2D01G593500 chr1D 85.827 762 97 6 1262 2014 432550749 432549990 0.000000e+00 798.0
22 TraesCS2D01G593500 chr5D 99.224 644 4 1 1 644 555351776 555352418 0.000000e+00 1160.0
23 TraesCS2D01G593500 chr5D 89.825 285 27 2 2741 3025 10073327 10073045 6.160000e-97 364.0
24 TraesCS2D01G593500 chr2B 87.731 758 83 5 1262 2011 774839221 774839976 0.000000e+00 876.0
25 TraesCS2D01G593500 chr2B 89.812 373 34 2 2655 3025 781817341 781817711 2.730000e-130 475.0
26 TraesCS2D01G593500 chr2B 78.197 821 123 27 1269 2070 627836625 627837408 9.810000e-130 473.0
27 TraesCS2D01G593500 chr2B 93.333 225 6 4 900 1123 781812189 781812405 1.050000e-84 324.0
28 TraesCS2D01G593500 chr2B 95.699 93 4 0 702 794 781810404 781810496 1.880000e-32 150.0
29 TraesCS2D01G593500 chr2B 100.000 30 0 0 1120 1149 781812424 781812453 4.210000e-04 56.5
30 TraesCS2D01G593500 chr6A 86.280 656 80 8 1416 2069 31587647 31587000 0.000000e+00 704.0
31 TraesCS2D01G593500 chr6A 86.280 656 81 7 1416 2069 31635912 31636560 0.000000e+00 704.0
32 TraesCS2D01G593500 chr6A 83.548 389 43 11 2023 2396 31636576 31636958 8.030000e-91 344.0
33 TraesCS2D01G593500 chr6A 86.014 143 20 0 1262 1404 31587769 31587627 1.450000e-33 154.0
34 TraesCS2D01G593500 chr6A 86.131 137 19 0 1262 1398 31635790 31635926 6.760000e-32 148.0
35 TraesCS2D01G593500 chr7D 91.579 285 21 2 2741 3025 625862003 625861722 1.020000e-104 390.0
36 TraesCS2D01G593500 chr7D 94.737 38 2 0 662 699 44099400 44099437 3.260000e-05 60.2
37 TraesCS2D01G593500 chr2A 91.579 285 21 2 2741 3025 11799879 11800160 1.020000e-104 390.0
38 TraesCS2D01G593500 chr3A 83.607 244 36 4 2752 2995 706818713 706818474 3.030000e-55 226.0
39 TraesCS2D01G593500 chr7B 81.295 278 43 6 2741 3017 48781214 48781483 1.830000e-52 217.0
40 TraesCS2D01G593500 chr1A 80.935 278 47 4 2746 3023 64403352 64403081 6.570000e-52 215.0
41 TraesCS2D01G593500 chr3B 80.841 214 33 8 2741 2950 284420635 284420426 8.680000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G593500 chr2D 647973319 647976343 3024 True 5587.000000 5587 100.000000 1 3025 1 chr2D.!!$R3 3024
1 TraesCS2D01G593500 chr2D 636433661 636434305 644 True 1164.000000 1164 99.225000 1 645 1 chr2D.!!$R1 644
2 TraesCS2D01G593500 chr2D 616369840 616370483 643 False 1162.000000 1162 99.224000 1 644 1 chr2D.!!$F1 643
3 TraesCS2D01G593500 chr2D 631307119 631307860 741 False 826.000000 826 86.853000 1266 2011 1 chr2D.!!$F2 745
4 TraesCS2D01G593500 chrUn 31352194 31354356 2162 False 1367.500000 1844 91.357000 730 2821 2 chrUn.!!$F1 2091
5 TraesCS2D01G593500 chrUn 104052183 104052953 770 True 440.000000 726 86.452000 1262 2069 2 chrUn.!!$R1 807
6 TraesCS2D01G593500 chrUn 76957148 76957918 770 False 426.000000 715 85.628500 1262 2069 2 chrUn.!!$F3 807
7 TraesCS2D01G593500 chr6D 542323 542967 644 False 1170.000000 1170 99.380000 1 645 1 chr6D.!!$F1 644
8 TraesCS2D01G593500 chr6D 378393754 378394398 644 False 1164.000000 1164 99.225000 1 645 1 chr6D.!!$F2 644
9 TraesCS2D01G593500 chr6D 454971511 454972155 644 True 1164.000000 1164 99.225000 1 645 1 chr6D.!!$R2 644
10 TraesCS2D01G593500 chr3D 106327583 106328227 644 False 1164.000000 1164 99.225000 1 645 1 chr3D.!!$F1 644
11 TraesCS2D01G593500 chr3D 500438426 500439069 643 False 1162.000000 1162 99.225000 1 645 1 chr3D.!!$F2 644
12 TraesCS2D01G593500 chr1D 408946668 408947311 643 True 1162.000000 1162 99.224000 1 644 1 chr1D.!!$R1 643
13 TraesCS2D01G593500 chr1D 432549990 432550749 759 True 798.000000 798 85.827000 1262 2014 1 chr1D.!!$R2 752
14 TraesCS2D01G593500 chr5D 555351776 555352418 642 False 1160.000000 1160 99.224000 1 644 1 chr5D.!!$F1 643
15 TraesCS2D01G593500 chr2B 774839221 774839976 755 False 876.000000 876 87.731000 1262 2011 1 chr2B.!!$F2 749
16 TraesCS2D01G593500 chr2B 627836625 627837408 783 False 473.000000 473 78.197000 1269 2070 1 chr2B.!!$F1 801
17 TraesCS2D01G593500 chr6A 31587000 31587769 769 True 429.000000 704 86.147000 1262 2069 2 chr6A.!!$R1 807
18 TraesCS2D01G593500 chr6A 31635790 31636958 1168 False 398.666667 704 85.319667 1262 2396 3 chr6A.!!$F1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 842 0.320421 TACACGAGCAAAGGCAGGTC 60.32 55.0 0.0 0.0 44.61 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2777 3030 0.031994 ATCAGTTTGGCCGTTTGTGC 59.968 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
655 656 8.990163 TTTTTCTACCAGTGACCTCTTTATTT 57.010 30.769 0.00 0.00 0.00 1.40
656 657 8.990163 TTTTCTACCAGTGACCTCTTTATTTT 57.010 30.769 0.00 0.00 0.00 1.82
657 658 8.990163 TTTCTACCAGTGACCTCTTTATTTTT 57.010 30.769 0.00 0.00 0.00 1.94
679 680 8.537049 TTTTTAAACTGCCATGATTGAAGATG 57.463 30.769 0.00 0.00 0.00 2.90
680 681 7.465353 TTTAAACTGCCATGATTGAAGATGA 57.535 32.000 0.00 0.00 0.00 2.92
681 682 5.988310 AAACTGCCATGATTGAAGATGAA 57.012 34.783 0.00 0.00 0.00 2.57
682 683 4.978083 ACTGCCATGATTGAAGATGAAC 57.022 40.909 0.00 0.00 0.00 3.18
683 684 4.338012 ACTGCCATGATTGAAGATGAACA 58.662 39.130 0.00 0.00 0.00 3.18
684 685 4.398358 ACTGCCATGATTGAAGATGAACAG 59.602 41.667 0.00 0.00 33.35 3.16
685 686 4.591929 TGCCATGATTGAAGATGAACAGA 58.408 39.130 0.00 0.00 0.00 3.41
686 687 5.198207 TGCCATGATTGAAGATGAACAGAT 58.802 37.500 0.00 0.00 0.00 2.90
687 688 5.655090 TGCCATGATTGAAGATGAACAGATT 59.345 36.000 0.00 0.00 0.00 2.40
688 689 5.977725 GCCATGATTGAAGATGAACAGATTG 59.022 40.000 0.00 0.00 0.00 2.67
689 690 6.183360 GCCATGATTGAAGATGAACAGATTGA 60.183 38.462 0.00 0.00 0.00 2.57
690 691 7.629866 GCCATGATTGAAGATGAACAGATTGAA 60.630 37.037 0.00 0.00 0.00 2.69
691 692 7.915923 CCATGATTGAAGATGAACAGATTGAAG 59.084 37.037 0.00 0.00 0.00 3.02
692 693 7.387119 TGATTGAAGATGAACAGATTGAAGG 57.613 36.000 0.00 0.00 0.00 3.46
693 694 6.944290 TGATTGAAGATGAACAGATTGAAGGT 59.056 34.615 0.00 0.00 0.00 3.50
694 695 7.449395 TGATTGAAGATGAACAGATTGAAGGTT 59.551 33.333 0.00 0.00 0.00 3.50
695 696 7.587037 TTGAAGATGAACAGATTGAAGGTTT 57.413 32.000 0.00 0.00 0.00 3.27
696 697 7.206981 TGAAGATGAACAGATTGAAGGTTTC 57.793 36.000 0.00 0.00 0.00 2.78
697 698 7.000472 TGAAGATGAACAGATTGAAGGTTTCT 59.000 34.615 0.00 0.00 0.00 2.52
698 699 7.173907 TGAAGATGAACAGATTGAAGGTTTCTC 59.826 37.037 0.00 0.00 0.00 2.87
699 700 5.641209 AGATGAACAGATTGAAGGTTTCTCG 59.359 40.000 0.00 0.00 0.00 4.04
700 701 4.956085 TGAACAGATTGAAGGTTTCTCGA 58.044 39.130 0.00 0.00 0.00 4.04
701 702 5.364778 TGAACAGATTGAAGGTTTCTCGAA 58.635 37.500 0.00 0.00 0.00 3.71
702 703 5.820423 TGAACAGATTGAAGGTTTCTCGAAA 59.180 36.000 0.00 0.00 0.00 3.46
703 704 6.317642 TGAACAGATTGAAGGTTTCTCGAAAA 59.682 34.615 0.00 0.00 31.33 2.29
704 705 6.693315 ACAGATTGAAGGTTTCTCGAAAAA 57.307 33.333 0.00 0.00 31.33 1.94
726 727 6.908870 AAAAAGACAAGAAAATCAAGGCAC 57.091 33.333 0.00 0.00 0.00 5.01
727 728 5.596836 AAAGACAAGAAAATCAAGGCACA 57.403 34.783 0.00 0.00 0.00 4.57
728 729 4.574599 AGACAAGAAAATCAAGGCACAC 57.425 40.909 0.00 0.00 0.00 3.82
800 801 1.114627 GGCCCAGATCCAAATCCAAC 58.885 55.000 0.00 0.00 31.78 3.77
808 809 2.350458 CCAAATCCAACCAGCCGGG 61.350 63.158 2.18 0.00 44.81 5.73
823 824 2.768344 GGGCCTGCCTAGTGCCTA 60.768 66.667 8.29 0.00 39.10 3.93
824 825 2.506472 GGCCTGCCTAGTGCCTAC 59.494 66.667 0.00 0.00 40.16 3.18
841 842 0.320421 TACACGAGCAAAGGCAGGTC 60.320 55.000 0.00 0.00 44.61 3.85
918 919 1.325355 TCCCGATCGGCTTAGGTAAG 58.675 55.000 29.12 11.63 36.40 2.34
938 939 3.016736 AGCACATACGGGGAAATCTTTG 58.983 45.455 0.00 0.00 0.00 2.77
990 991 3.512680 CACCGGACAAACACTAGAGATC 58.487 50.000 9.46 0.00 0.00 2.75
1103 1114 1.681486 TACATCGGCCGCTCCATTGA 61.681 55.000 23.51 0.00 34.01 2.57
1209 1242 1.866015 TCCCTGGATGAACGTCTGAT 58.134 50.000 0.00 0.00 0.00 2.90
1210 1243 2.187958 TCCCTGGATGAACGTCTGATT 58.812 47.619 0.00 0.00 0.00 2.57
1211 1244 2.093500 TCCCTGGATGAACGTCTGATTG 60.093 50.000 0.00 0.00 0.00 2.67
1233 1266 3.686227 TGCCCTGAATAACCATTCCAT 57.314 42.857 0.00 0.00 39.97 3.41
1300 1333 3.574826 GGTGTACCCTTGTTTATTTGGCA 59.425 43.478 0.00 0.00 0.00 4.92
1315 1360 0.615331 TGGCAACAGAGAGGACATCC 59.385 55.000 0.00 0.00 46.17 3.51
1328 1373 1.679032 GGACATCCCCTTCCGAACTTG 60.679 57.143 0.00 0.00 0.00 3.16
1399 1452 7.525526 CGGTATGATACTCTCTCTCTCTCTCTT 60.526 44.444 2.24 0.00 0.00 2.85
1408 1461 5.960811 TCTCTCTCTCTCTCTTTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1409 1462 6.097554 TCTCTCTCTCTCTCTTTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
1410 1463 5.960811 TCTCTCTCTCTCTTTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1411 1464 6.097554 TCTCTCTCTCTCTTTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
1412 1465 5.960811 TCTCTCTCTCTTTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1413 1466 6.097554 TCTCTCTCTCTTTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
1414 1467 5.960811 TCTCTCTCTTTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1415 1468 6.097554 TCTCTCTCTTTCTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
1416 1469 5.960811 TCTCTCTTTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1417 1470 6.097554 TCTCTCTTTCTCTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
1418 1471 5.960811 TCTCTTTCTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1419 1472 6.097554 TCTCTTTCTCTCTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
1420 1473 5.960811 TCTTTCTCTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
1421 1474 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
1422 1475 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1423 1476 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1531 1602 3.911260 TCGAGTATCCTGAGTATCCTCCT 59.089 47.826 0.00 0.00 36.86 3.69
1690 1762 0.037326 TCCGCCAACTAGCTGTTCAG 60.037 55.000 0.00 0.00 36.63 3.02
1761 1862 5.231568 CGTACTATGTTTGCTAGCCACTTAC 59.768 44.000 13.29 3.73 0.00 2.34
1809 1911 6.573664 TGCAGCTAATTCTCTCTCTATCTC 57.426 41.667 0.00 0.00 0.00 2.75
1828 1931 9.513906 TCTATCTCTCTCTATAATGTCAACAGG 57.486 37.037 0.00 0.00 0.00 4.00
1925 2028 3.068590 CAGAATTTGTGTGTGGAAAGCCT 59.931 43.478 0.00 0.00 34.31 4.58
2045 2148 5.109210 TGACTCAACTCTTATGTTATGGCG 58.891 41.667 0.00 0.00 0.00 5.69
2049 2152 7.948357 ACTCAACTCTTATGTTATGGCGTATA 58.052 34.615 0.00 0.00 0.00 1.47
2242 2495 8.203485 TCTCTTTTATTTCAGTGGTGCAATTTT 58.797 29.630 0.00 0.00 0.00 1.82
2254 2507 9.206870 CAGTGGTGCAATTTTTGTTATATTTCT 57.793 29.630 0.00 0.00 0.00 2.52
2277 2530 2.124570 CCGAGGCTCCCAATGGTG 60.125 66.667 9.32 0.00 0.00 4.17
2307 2560 0.461135 AGCCTTTTGTGTTGTGGCAG 59.539 50.000 0.00 0.00 45.42 4.85
2324 2577 1.743772 GCAGTGCCATGGAGACGTTAT 60.744 52.381 18.40 0.00 0.00 1.89
2346 2599 8.903820 GTTATGCTATCCTAATGTGTTTTTCCT 58.096 33.333 0.00 0.00 0.00 3.36
2426 2679 3.565307 ACTCATCCCTCTCATCTCTCAC 58.435 50.000 0.00 0.00 0.00 3.51
2435 2688 5.885352 CCCTCTCATCTCTCACACGATATAT 59.115 44.000 0.00 0.00 0.00 0.86
2443 2696 6.875076 TCTCTCACACGATATATCTCCGATA 58.125 40.000 10.93 0.00 0.00 2.92
2513 2766 5.181245 CGCTTCTCCAATTTGAAAACTCCTA 59.819 40.000 0.00 0.00 0.00 2.94
2558 2811 2.026822 CAGTAATCCAGAGCACTTGGGT 60.027 50.000 1.93 0.00 0.00 4.51
2591 2844 3.059188 CACCGTTCAAACAACGCTCTATT 60.059 43.478 1.31 0.00 41.85 1.73
2597 2850 4.304110 TCAAACAACGCTCTATTTCTCGT 58.696 39.130 0.00 0.00 36.67 4.18
2652 2905 8.818141 TCAAATGATGACGAAACTATCTATCC 57.182 34.615 0.00 0.00 31.50 2.59
2660 2913 5.202004 ACGAAACTATCTATCCCACTGAGT 58.798 41.667 0.00 0.00 0.00 3.41
2664 2917 7.660617 CGAAACTATCTATCCCACTGAGTACTA 59.339 40.741 0.00 0.00 0.00 1.82
2674 2927 5.010933 CCCACTGAGTACTAGAGAGAACAA 58.989 45.833 0.00 0.00 0.00 2.83
2694 2947 9.019764 AGAACAATTGTAAGTTTTTCATCAACG 57.980 29.630 12.39 0.00 0.00 4.10
2698 2951 7.924103 ATTGTAAGTTTTTCATCAACGTTCC 57.076 32.000 0.00 0.00 0.00 3.62
2700 2953 6.721321 TGTAAGTTTTTCATCAACGTTCCTC 58.279 36.000 0.00 0.00 0.00 3.71
2709 2962 5.301555 TCATCAACGTTCCTCATGTGTTAA 58.698 37.500 0.00 0.00 0.00 2.01
2719 2972 3.684788 CCTCATGTGTTAAAGGAAGACCG 59.315 47.826 0.00 0.00 41.83 4.79
2720 2973 4.562757 CCTCATGTGTTAAAGGAAGACCGA 60.563 45.833 0.00 0.00 41.83 4.69
2731 2984 0.448593 GAAGACCGACCTCTCTCACG 59.551 60.000 0.00 0.00 0.00 4.35
2737 2990 1.679305 GACCTCTCTCACGCCCTGA 60.679 63.158 0.00 0.00 0.00 3.86
2739 2992 1.254284 ACCTCTCTCACGCCCTGAAG 61.254 60.000 0.00 0.00 0.00 3.02
2750 3003 1.532868 CGCCCTGAAGTCTTGAAACAG 59.467 52.381 0.00 0.00 0.00 3.16
2758 3011 2.919228 AGTCTTGAAACAGGCTTTCGT 58.081 42.857 0.00 0.00 0.00 3.85
2771 3024 3.267551 AGGCTTTCGTCCCCCTTTATAAA 59.732 43.478 0.00 0.00 0.00 1.40
2772 3025 4.079385 AGGCTTTCGTCCCCCTTTATAAAT 60.079 41.667 0.00 0.00 0.00 1.40
2775 3028 6.321945 GGCTTTCGTCCCCCTTTATAAATAAA 59.678 38.462 0.00 0.00 0.00 1.40
2800 3053 2.292292 ACAAACGGCCAAACTGATACAC 59.708 45.455 2.24 0.00 0.00 2.90
2827 3080 2.254152 AGGAGACCCTCATACAAGCA 57.746 50.000 0.00 0.00 38.86 3.91
2828 3081 2.114616 AGGAGACCCTCATACAAGCAG 58.885 52.381 0.00 0.00 38.86 4.24
2829 3082 1.139853 GGAGACCCTCATACAAGCAGG 59.860 57.143 0.00 0.00 31.08 4.85
2830 3083 1.834263 GAGACCCTCATACAAGCAGGT 59.166 52.381 0.00 0.00 0.00 4.00
2831 3084 1.834263 AGACCCTCATACAAGCAGGTC 59.166 52.381 0.00 0.00 43.33 3.85
2832 3085 0.537188 ACCCTCATACAAGCAGGTCG 59.463 55.000 0.00 0.00 0.00 4.79
2833 3086 0.824109 CCCTCATACAAGCAGGTCGA 59.176 55.000 0.00 0.00 0.00 4.20
2834 3087 1.207089 CCCTCATACAAGCAGGTCGAA 59.793 52.381 0.00 0.00 0.00 3.71
2835 3088 2.354704 CCCTCATACAAGCAGGTCGAAA 60.355 50.000 0.00 0.00 0.00 3.46
2836 3089 2.932614 CCTCATACAAGCAGGTCGAAAG 59.067 50.000 0.00 0.00 0.00 2.62
2837 3090 3.368427 CCTCATACAAGCAGGTCGAAAGA 60.368 47.826 0.00 0.00 38.16 2.52
2838 3091 4.245660 CTCATACAAGCAGGTCGAAAGAA 58.754 43.478 0.00 0.00 45.01 2.52
2839 3092 4.637276 TCATACAAGCAGGTCGAAAGAAA 58.363 39.130 0.00 0.00 45.01 2.52
2840 3093 5.060506 TCATACAAGCAGGTCGAAAGAAAA 58.939 37.500 0.00 0.00 45.01 2.29
2841 3094 5.529430 TCATACAAGCAGGTCGAAAGAAAAA 59.471 36.000 0.00 0.00 45.01 1.94
2842 3095 4.918810 ACAAGCAGGTCGAAAGAAAAAT 57.081 36.364 0.00 0.00 45.01 1.82
2843 3096 7.389330 TCATACAAGCAGGTCGAAAGAAAAATA 59.611 33.333 0.00 0.00 45.01 1.40
2844 3097 6.385649 ACAAGCAGGTCGAAAGAAAAATAA 57.614 33.333 0.00 0.00 45.01 1.40
2845 3098 6.801575 ACAAGCAGGTCGAAAGAAAAATAAA 58.198 32.000 0.00 0.00 45.01 1.40
2846 3099 7.262048 ACAAGCAGGTCGAAAGAAAAATAAAA 58.738 30.769 0.00 0.00 45.01 1.52
2847 3100 7.222031 ACAAGCAGGTCGAAAGAAAAATAAAAC 59.778 33.333 0.00 0.00 45.01 2.43
2848 3101 5.912955 AGCAGGTCGAAAGAAAAATAAAACG 59.087 36.000 0.00 0.00 45.01 3.60
2849 3102 5.116528 GCAGGTCGAAAGAAAAATAAAACGG 59.883 40.000 0.00 0.00 45.01 4.44
2850 3103 5.116528 CAGGTCGAAAGAAAAATAAAACGGC 59.883 40.000 0.00 0.00 45.01 5.68
2851 3104 4.977347 GGTCGAAAGAAAAATAAAACGGCA 59.023 37.500 0.00 0.00 45.01 5.69
2852 3105 5.116528 GGTCGAAAGAAAAATAAAACGGCAG 59.883 40.000 0.00 0.00 45.01 4.85
2853 3106 5.684184 GTCGAAAGAAAAATAAAACGGCAGT 59.316 36.000 0.00 0.00 45.01 4.40
2854 3107 5.683743 TCGAAAGAAAAATAAAACGGCAGTG 59.316 36.000 0.00 0.00 37.03 3.66
2855 3108 5.683743 CGAAAGAAAAATAAAACGGCAGTGA 59.316 36.000 0.00 0.00 0.00 3.41
2856 3109 6.362283 CGAAAGAAAAATAAAACGGCAGTGAT 59.638 34.615 0.00 0.00 0.00 3.06
2857 3110 7.409343 CGAAAGAAAAATAAAACGGCAGTGATC 60.409 37.037 0.00 0.00 0.00 2.92
2858 3111 6.575162 AGAAAAATAAAACGGCAGTGATCT 57.425 33.333 0.00 0.00 0.00 2.75
2859 3112 7.681939 AGAAAAATAAAACGGCAGTGATCTA 57.318 32.000 0.00 0.00 0.00 1.98
2860 3113 7.752695 AGAAAAATAAAACGGCAGTGATCTAG 58.247 34.615 0.00 0.00 0.00 2.43
2861 3114 7.390718 AGAAAAATAAAACGGCAGTGATCTAGT 59.609 33.333 0.00 0.00 0.00 2.57
2862 3115 6.422776 AAATAAAACGGCAGTGATCTAGTG 57.577 37.500 0.00 0.00 0.00 2.74
2863 3116 2.386661 AAACGGCAGTGATCTAGTGG 57.613 50.000 0.00 0.00 0.00 4.00
2867 3120 3.840831 GCAGTGATCTAGTGGCACA 57.159 52.632 21.41 5.00 35.08 4.57
2879 3132 3.591979 TGGCACACGTACCACTAAC 57.408 52.632 0.26 0.00 0.00 2.34
2880 3133 0.033781 TGGCACACGTACCACTAACC 59.966 55.000 0.26 0.00 0.00 2.85
2881 3134 0.671472 GGCACACGTACCACTAACCC 60.671 60.000 0.00 0.00 0.00 4.11
2882 3135 0.033781 GCACACGTACCACTAACCCA 59.966 55.000 0.00 0.00 0.00 4.51
2883 3136 1.540797 GCACACGTACCACTAACCCAA 60.541 52.381 0.00 0.00 0.00 4.12
2884 3137 2.137523 CACACGTACCACTAACCCAAC 58.862 52.381 0.00 0.00 0.00 3.77
2885 3138 1.761784 ACACGTACCACTAACCCAACA 59.238 47.619 0.00 0.00 0.00 3.33
2886 3139 2.137523 CACGTACCACTAACCCAACAC 58.862 52.381 0.00 0.00 0.00 3.32
2887 3140 2.041701 ACGTACCACTAACCCAACACT 58.958 47.619 0.00 0.00 0.00 3.55
2888 3141 2.224113 ACGTACCACTAACCCAACACTG 60.224 50.000 0.00 0.00 0.00 3.66
2889 3142 2.036217 CGTACCACTAACCCAACACTGA 59.964 50.000 0.00 0.00 0.00 3.41
2890 3143 3.493002 CGTACCACTAACCCAACACTGAA 60.493 47.826 0.00 0.00 0.00 3.02
2891 3144 2.927028 ACCACTAACCCAACACTGAAC 58.073 47.619 0.00 0.00 0.00 3.18
2892 3145 2.240160 ACCACTAACCCAACACTGAACA 59.760 45.455 0.00 0.00 0.00 3.18
2893 3146 2.878406 CCACTAACCCAACACTGAACAG 59.122 50.000 0.00 0.00 0.00 3.16
2894 3147 2.878406 CACTAACCCAACACTGAACAGG 59.122 50.000 6.76 0.00 0.00 4.00
2895 3148 2.775384 ACTAACCCAACACTGAACAGGA 59.225 45.455 6.76 0.00 0.00 3.86
2896 3149 2.818751 AACCCAACACTGAACAGGAA 57.181 45.000 6.76 0.00 0.00 3.36
2897 3150 2.818751 ACCCAACACTGAACAGGAAA 57.181 45.000 6.76 0.00 0.00 3.13
2898 3151 2.375146 ACCCAACACTGAACAGGAAAC 58.625 47.619 6.76 0.00 0.00 2.78
2899 3152 1.681264 CCCAACACTGAACAGGAAACC 59.319 52.381 6.76 0.00 0.00 3.27
2900 3153 2.374184 CCAACACTGAACAGGAAACCA 58.626 47.619 6.76 0.00 0.00 3.67
2901 3154 2.358898 CCAACACTGAACAGGAAACCAG 59.641 50.000 6.76 0.00 0.00 4.00
2902 3155 2.348411 ACACTGAACAGGAAACCAGG 57.652 50.000 6.76 0.00 0.00 4.45
2903 3156 1.843851 ACACTGAACAGGAAACCAGGA 59.156 47.619 6.76 0.00 0.00 3.86
2904 3157 2.158755 ACACTGAACAGGAAACCAGGAG 60.159 50.000 6.76 0.00 0.00 3.69
2905 3158 2.104792 CACTGAACAGGAAACCAGGAGA 59.895 50.000 6.76 0.00 0.00 3.71
2906 3159 2.104963 ACTGAACAGGAAACCAGGAGAC 59.895 50.000 6.76 0.00 0.00 3.36
2907 3160 2.104792 CTGAACAGGAAACCAGGAGACA 59.895 50.000 0.00 0.00 0.00 3.41
2908 3161 2.158813 TGAACAGGAAACCAGGAGACAC 60.159 50.000 0.00 0.00 0.00 3.67
2909 3162 0.765510 ACAGGAAACCAGGAGACACC 59.234 55.000 0.00 0.00 39.35 4.16
2910 3163 0.764890 CAGGAAACCAGGAGACACCA 59.235 55.000 0.00 0.00 42.04 4.17
2911 3164 1.352352 CAGGAAACCAGGAGACACCAT 59.648 52.381 0.00 0.00 42.04 3.55
2912 3165 1.630878 AGGAAACCAGGAGACACCATC 59.369 52.381 0.00 0.00 42.04 3.51
2913 3166 1.340114 GGAAACCAGGAGACACCATCC 60.340 57.143 0.00 0.00 42.04 3.51
2914 3167 0.698818 AAACCAGGAGACACCATCCC 59.301 55.000 0.00 0.00 42.04 3.85
2915 3168 0.178861 AACCAGGAGACACCATCCCT 60.179 55.000 0.00 0.00 42.04 4.20
2916 3169 0.716591 ACCAGGAGACACCATCCCTA 59.283 55.000 0.00 0.00 42.04 3.53
2917 3170 1.080498 ACCAGGAGACACCATCCCTAA 59.920 52.381 0.00 0.00 42.04 2.69
2918 3171 1.486726 CCAGGAGACACCATCCCTAAC 59.513 57.143 0.00 0.00 42.04 2.34
2919 3172 2.187958 CAGGAGACACCATCCCTAACA 58.812 52.381 0.00 0.00 42.04 2.41
2920 3173 2.093447 CAGGAGACACCATCCCTAACAC 60.093 54.545 0.00 0.00 42.04 3.32
2921 3174 1.906574 GGAGACACCATCCCTAACACA 59.093 52.381 0.00 0.00 38.79 3.72
2922 3175 2.505819 GGAGACACCATCCCTAACACAT 59.494 50.000 0.00 0.00 38.79 3.21
2923 3176 3.709653 GGAGACACCATCCCTAACACATA 59.290 47.826 0.00 0.00 38.79 2.29
2924 3177 4.163458 GGAGACACCATCCCTAACACATAA 59.837 45.833 0.00 0.00 38.79 1.90
2925 3178 5.099042 AGACACCATCCCTAACACATAAC 57.901 43.478 0.00 0.00 0.00 1.89
2926 3179 4.534500 AGACACCATCCCTAACACATAACA 59.466 41.667 0.00 0.00 0.00 2.41
2927 3180 4.585879 ACACCATCCCTAACACATAACAC 58.414 43.478 0.00 0.00 0.00 3.32
2928 3181 3.945285 CACCATCCCTAACACATAACACC 59.055 47.826 0.00 0.00 0.00 4.16
2929 3182 3.053917 ACCATCCCTAACACATAACACCC 60.054 47.826 0.00 0.00 0.00 4.61
2930 3183 3.053991 CCATCCCTAACACATAACACCCA 60.054 47.826 0.00 0.00 0.00 4.51
2931 3184 3.706600 TCCCTAACACATAACACCCAC 57.293 47.619 0.00 0.00 0.00 4.61
2932 3185 3.253220 TCCCTAACACATAACACCCACT 58.747 45.455 0.00 0.00 0.00 4.00
2933 3186 4.427637 TCCCTAACACATAACACCCACTA 58.572 43.478 0.00 0.00 0.00 2.74
2934 3187 4.223477 TCCCTAACACATAACACCCACTAC 59.777 45.833 0.00 0.00 0.00 2.73
2935 3188 4.224370 CCCTAACACATAACACCCACTACT 59.776 45.833 0.00 0.00 0.00 2.57
2936 3189 5.422970 CCCTAACACATAACACCCACTACTA 59.577 44.000 0.00 0.00 0.00 1.82
2937 3190 6.335777 CCTAACACATAACACCCACTACTAC 58.664 44.000 0.00 0.00 0.00 2.73
2938 3191 6.154021 CCTAACACATAACACCCACTACTACT 59.846 42.308 0.00 0.00 0.00 2.57
2939 3192 5.401531 ACACATAACACCCACTACTACTG 57.598 43.478 0.00 0.00 0.00 2.74
2940 3193 4.222145 ACACATAACACCCACTACTACTGG 59.778 45.833 0.00 0.00 0.00 4.00
2941 3194 4.464951 CACATAACACCCACTACTACTGGA 59.535 45.833 0.00 0.00 0.00 3.86
2942 3195 4.465305 ACATAACACCCACTACTACTGGAC 59.535 45.833 0.00 0.00 0.00 4.02
2943 3196 2.688902 ACACCCACTACTACTGGACA 57.311 50.000 0.00 0.00 0.00 4.02
2944 3197 2.966915 ACACCCACTACTACTGGACAA 58.033 47.619 0.00 0.00 0.00 3.18
2945 3198 2.897969 ACACCCACTACTACTGGACAAG 59.102 50.000 0.00 0.00 0.00 3.16
2946 3199 3.162666 CACCCACTACTACTGGACAAGA 58.837 50.000 0.00 0.00 0.00 3.02
2947 3200 3.056749 CACCCACTACTACTGGACAAGAC 60.057 52.174 0.00 0.00 0.00 3.01
2948 3201 2.496470 CCCACTACTACTGGACAAGACC 59.504 54.545 0.00 0.00 0.00 3.85
2949 3202 2.163815 CCACTACTACTGGACAAGACCG 59.836 54.545 0.00 0.00 0.00 4.79
2950 3203 2.163815 CACTACTACTGGACAAGACCGG 59.836 54.545 0.00 0.00 41.66 5.28
2951 3204 2.040813 ACTACTACTGGACAAGACCGGA 59.959 50.000 9.46 0.00 39.41 5.14
2952 3205 1.546961 ACTACTGGACAAGACCGGAG 58.453 55.000 9.46 0.00 39.41 4.63
2953 3206 0.173708 CTACTGGACAAGACCGGAGC 59.826 60.000 9.46 0.00 39.41 4.70
2954 3207 1.255667 TACTGGACAAGACCGGAGCC 61.256 60.000 9.46 0.00 39.41 4.70
2955 3208 2.525629 TGGACAAGACCGGAGCCA 60.526 61.111 9.46 2.81 0.00 4.75
2956 3209 2.111999 CTGGACAAGACCGGAGCCAA 62.112 60.000 9.46 0.00 38.49 4.52
2957 3210 1.376037 GGACAAGACCGGAGCCAAG 60.376 63.158 9.46 0.00 0.00 3.61
2958 3211 2.032681 ACAAGACCGGAGCCAAGC 59.967 61.111 9.46 0.00 0.00 4.01
2959 3212 2.747855 CAAGACCGGAGCCAAGCC 60.748 66.667 9.46 0.00 0.00 4.35
2966 3219 4.722700 GGAGCCAAGCCGCCTGAA 62.723 66.667 0.00 0.00 0.00 3.02
2967 3220 3.130160 GAGCCAAGCCGCCTGAAG 61.130 66.667 0.00 0.00 0.00 3.02
2968 3221 3.612247 GAGCCAAGCCGCCTGAAGA 62.612 63.158 0.00 0.00 0.00 2.87
2969 3222 2.672996 GCCAAGCCGCCTGAAGAA 60.673 61.111 0.00 0.00 0.00 2.52
2970 3223 2.268076 GCCAAGCCGCCTGAAGAAA 61.268 57.895 0.00 0.00 0.00 2.52
2971 3224 1.581447 CCAAGCCGCCTGAAGAAAC 59.419 57.895 0.00 0.00 0.00 2.78
2972 3225 1.581447 CAAGCCGCCTGAAGAAACC 59.419 57.895 0.00 0.00 0.00 3.27
2973 3226 1.150536 AAGCCGCCTGAAGAAACCA 59.849 52.632 0.00 0.00 0.00 3.67
2974 3227 1.172812 AAGCCGCCTGAAGAAACCAC 61.173 55.000 0.00 0.00 0.00 4.16
2975 3228 2.626780 GCCGCCTGAAGAAACCACC 61.627 63.158 0.00 0.00 0.00 4.61
2976 3229 2.325082 CCGCCTGAAGAAACCACCG 61.325 63.158 0.00 0.00 0.00 4.94
2977 3230 2.325082 CGCCTGAAGAAACCACCGG 61.325 63.158 0.00 0.00 0.00 5.28
2978 3231 1.228154 GCCTGAAGAAACCACCGGT 60.228 57.895 0.00 0.00 37.65 5.28
2979 3232 1.235281 GCCTGAAGAAACCACCGGTC 61.235 60.000 2.59 0.00 33.12 4.79
2980 3233 0.107831 CCTGAAGAAACCACCGGTCA 59.892 55.000 2.59 0.00 33.12 4.02
2981 3234 1.226746 CTGAAGAAACCACCGGTCAC 58.773 55.000 2.59 0.00 33.12 3.67
2982 3235 0.179040 TGAAGAAACCACCGGTCACC 60.179 55.000 2.59 0.00 33.12 4.02
2983 3236 0.179040 GAAGAAACCACCGGTCACCA 60.179 55.000 2.59 0.00 33.12 4.17
2984 3237 0.476771 AAGAAACCACCGGTCACCAT 59.523 50.000 2.59 0.00 33.12 3.55
2985 3238 0.250727 AGAAACCACCGGTCACCATG 60.251 55.000 2.59 0.00 33.12 3.66
2986 3239 1.228429 AAACCACCGGTCACCATGG 60.228 57.895 11.19 11.19 33.12 3.66
2987 3240 2.002018 AAACCACCGGTCACCATGGT 62.002 55.000 13.00 13.00 42.34 3.55
2988 3241 1.128809 AACCACCGGTCACCATGGTA 61.129 55.000 19.28 3.34 40.46 3.25
2989 3242 1.078708 CCACCGGTCACCATGGTAC 60.079 63.158 19.28 15.43 33.82 3.34
2990 3243 1.078708 CACCGGTCACCATGGTACC 60.079 63.158 19.28 21.99 33.82 3.34
2994 3247 3.148340 GGTCACCATGGTACCGAAC 57.852 57.895 19.28 10.24 0.00 3.95
3005 3258 0.589708 GTACCGAACCAACACCAAGC 59.410 55.000 0.00 0.00 0.00 4.01
3006 3259 0.535553 TACCGAACCAACACCAAGCC 60.536 55.000 0.00 0.00 0.00 4.35
3007 3260 1.826054 CCGAACCAACACCAAGCCA 60.826 57.895 0.00 0.00 0.00 4.75
3008 3261 1.388065 CCGAACCAACACCAAGCCAA 61.388 55.000 0.00 0.00 0.00 4.52
3009 3262 0.248866 CGAACCAACACCAAGCCAAC 60.249 55.000 0.00 0.00 0.00 3.77
3010 3263 1.111277 GAACCAACACCAAGCCAACT 58.889 50.000 0.00 0.00 0.00 3.16
3011 3264 1.067060 GAACCAACACCAAGCCAACTC 59.933 52.381 0.00 0.00 0.00 3.01
3012 3265 0.755327 ACCAACACCAAGCCAACTCC 60.755 55.000 0.00 0.00 0.00 3.85
3013 3266 1.654220 CAACACCAAGCCAACTCCG 59.346 57.895 0.00 0.00 0.00 4.63
3014 3267 1.528309 AACACCAAGCCAACTCCGG 60.528 57.895 0.00 0.00 0.00 5.14
3015 3268 1.990160 AACACCAAGCCAACTCCGGA 61.990 55.000 2.93 2.93 0.00 5.14
3016 3269 1.228124 CACCAAGCCAACTCCGGAA 60.228 57.895 5.23 0.00 0.00 4.30
3017 3270 0.821711 CACCAAGCCAACTCCGGAAA 60.822 55.000 5.23 0.00 0.00 3.13
3018 3271 0.537371 ACCAAGCCAACTCCGGAAAG 60.537 55.000 5.23 0.00 0.00 2.62
3019 3272 1.244019 CCAAGCCAACTCCGGAAAGG 61.244 60.000 5.23 8.95 42.97 3.11
3021 3274 0.250770 AAGCCAACTCCGGAAAGGAC 60.251 55.000 17.98 10.37 45.98 3.85
3022 3275 1.674651 GCCAACTCCGGAAAGGACC 60.675 63.158 17.98 0.71 45.98 4.46
3023 3276 1.375523 CCAACTCCGGAAAGGACCG 60.376 63.158 5.23 0.00 45.98 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
388 389 0.976590 GGACTAAAGGCCTCCTCCGT 60.977 60.000 5.23 0.00 30.89 4.69
654 655 8.366401 TCATCTTCAATCATGGCAGTTTAAAAA 58.634 29.630 0.00 0.00 0.00 1.94
655 656 7.894708 TCATCTTCAATCATGGCAGTTTAAAA 58.105 30.769 0.00 0.00 0.00 1.52
656 657 7.465353 TCATCTTCAATCATGGCAGTTTAAA 57.535 32.000 0.00 0.00 0.00 1.52
657 658 7.039853 TGTTCATCTTCAATCATGGCAGTTTAA 60.040 33.333 0.00 0.00 0.00 1.52
658 659 6.433716 TGTTCATCTTCAATCATGGCAGTTTA 59.566 34.615 0.00 0.00 0.00 2.01
659 660 5.244402 TGTTCATCTTCAATCATGGCAGTTT 59.756 36.000 0.00 0.00 0.00 2.66
660 661 4.768448 TGTTCATCTTCAATCATGGCAGTT 59.232 37.500 0.00 0.00 0.00 3.16
661 662 4.338012 TGTTCATCTTCAATCATGGCAGT 58.662 39.130 0.00 0.00 0.00 4.40
662 663 4.638865 TCTGTTCATCTTCAATCATGGCAG 59.361 41.667 0.00 0.00 0.00 4.85
663 664 4.591929 TCTGTTCATCTTCAATCATGGCA 58.408 39.130 0.00 0.00 0.00 4.92
664 665 5.769484 ATCTGTTCATCTTCAATCATGGC 57.231 39.130 0.00 0.00 0.00 4.40
665 666 7.329588 TCAATCTGTTCATCTTCAATCATGG 57.670 36.000 0.00 0.00 0.00 3.66
666 667 7.915923 CCTTCAATCTGTTCATCTTCAATCATG 59.084 37.037 0.00 0.00 0.00 3.07
667 668 7.614583 ACCTTCAATCTGTTCATCTTCAATCAT 59.385 33.333 0.00 0.00 0.00 2.45
668 669 6.944290 ACCTTCAATCTGTTCATCTTCAATCA 59.056 34.615 0.00 0.00 0.00 2.57
669 670 7.388460 ACCTTCAATCTGTTCATCTTCAATC 57.612 36.000 0.00 0.00 0.00 2.67
670 671 7.771927 AACCTTCAATCTGTTCATCTTCAAT 57.228 32.000 0.00 0.00 0.00 2.57
671 672 7.503566 AGAAACCTTCAATCTGTTCATCTTCAA 59.496 33.333 0.00 0.00 0.00 2.69
672 673 7.000472 AGAAACCTTCAATCTGTTCATCTTCA 59.000 34.615 0.00 0.00 0.00 3.02
673 674 7.446001 AGAAACCTTCAATCTGTTCATCTTC 57.554 36.000 0.00 0.00 0.00 2.87
674 675 6.148480 CGAGAAACCTTCAATCTGTTCATCTT 59.852 38.462 0.00 0.00 0.00 2.40
675 676 5.641209 CGAGAAACCTTCAATCTGTTCATCT 59.359 40.000 0.00 0.00 0.00 2.90
676 677 5.639506 TCGAGAAACCTTCAATCTGTTCATC 59.360 40.000 0.00 0.00 0.00 2.92
677 678 5.551233 TCGAGAAACCTTCAATCTGTTCAT 58.449 37.500 0.00 0.00 0.00 2.57
678 679 4.956085 TCGAGAAACCTTCAATCTGTTCA 58.044 39.130 0.00 0.00 0.00 3.18
679 680 5.924475 TTCGAGAAACCTTCAATCTGTTC 57.076 39.130 0.00 0.00 0.00 3.18
680 681 6.693315 TTTTCGAGAAACCTTCAATCTGTT 57.307 33.333 0.00 0.00 0.00 3.16
681 682 6.693315 TTTTTCGAGAAACCTTCAATCTGT 57.307 33.333 0.00 0.00 0.00 3.41
703 704 6.313658 GTGTGCCTTGATTTTCTTGTCTTTTT 59.686 34.615 0.00 0.00 0.00 1.94
704 705 5.812127 GTGTGCCTTGATTTTCTTGTCTTTT 59.188 36.000 0.00 0.00 0.00 2.27
705 706 5.105392 TGTGTGCCTTGATTTTCTTGTCTTT 60.105 36.000 0.00 0.00 0.00 2.52
706 707 4.402155 TGTGTGCCTTGATTTTCTTGTCTT 59.598 37.500 0.00 0.00 0.00 3.01
707 708 3.953612 TGTGTGCCTTGATTTTCTTGTCT 59.046 39.130 0.00 0.00 0.00 3.41
708 709 4.305989 TGTGTGCCTTGATTTTCTTGTC 57.694 40.909 0.00 0.00 0.00 3.18
709 710 4.734398 TTGTGTGCCTTGATTTTCTTGT 57.266 36.364 0.00 0.00 0.00 3.16
710 711 7.566709 GTTTATTGTGTGCCTTGATTTTCTTG 58.433 34.615 0.00 0.00 0.00 3.02
711 712 6.420604 CGTTTATTGTGTGCCTTGATTTTCTT 59.579 34.615 0.00 0.00 0.00 2.52
712 713 5.920273 CGTTTATTGTGTGCCTTGATTTTCT 59.080 36.000 0.00 0.00 0.00 2.52
713 714 5.689961 ACGTTTATTGTGTGCCTTGATTTTC 59.310 36.000 0.00 0.00 0.00 2.29
714 715 5.596845 ACGTTTATTGTGTGCCTTGATTTT 58.403 33.333 0.00 0.00 0.00 1.82
715 716 5.195001 ACGTTTATTGTGTGCCTTGATTT 57.805 34.783 0.00 0.00 0.00 2.17
716 717 4.846779 ACGTTTATTGTGTGCCTTGATT 57.153 36.364 0.00 0.00 0.00 2.57
717 718 4.394920 CCTACGTTTATTGTGTGCCTTGAT 59.605 41.667 0.00 0.00 0.00 2.57
718 719 3.749088 CCTACGTTTATTGTGTGCCTTGA 59.251 43.478 0.00 0.00 0.00 3.02
719 720 3.669557 GCCTACGTTTATTGTGTGCCTTG 60.670 47.826 0.00 0.00 0.00 3.61
720 721 2.486592 GCCTACGTTTATTGTGTGCCTT 59.513 45.455 0.00 0.00 0.00 4.35
721 722 2.081462 GCCTACGTTTATTGTGTGCCT 58.919 47.619 0.00 0.00 0.00 4.75
722 723 2.081462 AGCCTACGTTTATTGTGTGCC 58.919 47.619 0.00 0.00 0.00 5.01
723 724 5.263185 CAATAGCCTACGTTTATTGTGTGC 58.737 41.667 0.00 0.00 32.67 4.57
724 725 5.583061 TCCAATAGCCTACGTTTATTGTGTG 59.417 40.000 0.00 0.00 34.51 3.82
725 726 5.736813 TCCAATAGCCTACGTTTATTGTGT 58.263 37.500 0.00 0.00 34.51 3.72
726 727 5.277345 GCTCCAATAGCCTACGTTTATTGTG 60.277 44.000 0.00 1.70 46.25 3.33
727 728 4.814771 GCTCCAATAGCCTACGTTTATTGT 59.185 41.667 0.00 0.00 46.25 2.71
728 729 5.344207 GCTCCAATAGCCTACGTTTATTG 57.656 43.478 0.00 4.28 46.25 1.90
808 809 1.153349 GTGTAGGCACTAGGCAGGC 60.153 63.158 0.00 0.00 44.14 4.85
817 818 2.162716 CCTTTGCTCGTGTAGGCAC 58.837 57.895 0.00 0.00 41.97 5.01
823 824 1.598130 GACCTGCCTTTGCTCGTGT 60.598 57.895 0.00 0.00 38.71 4.49
824 825 2.671177 CGACCTGCCTTTGCTCGTG 61.671 63.158 0.00 0.00 38.71 4.35
826 827 0.669318 TAACGACCTGCCTTTGCTCG 60.669 55.000 0.00 0.00 38.30 5.03
827 828 1.739067 ATAACGACCTGCCTTTGCTC 58.261 50.000 0.00 0.00 38.71 4.26
828 829 2.200373 AATAACGACCTGCCTTTGCT 57.800 45.000 0.00 0.00 38.71 3.91
829 830 4.335594 AGATAAATAACGACCTGCCTTTGC 59.664 41.667 0.00 0.00 38.26 3.68
841 842 4.850347 AGGGAGACGGAGATAAATAACG 57.150 45.455 0.00 0.00 0.00 3.18
842 843 5.915175 ACAAGGGAGACGGAGATAAATAAC 58.085 41.667 0.00 0.00 0.00 1.89
843 844 5.897824 AGACAAGGGAGACGGAGATAAATAA 59.102 40.000 0.00 0.00 0.00 1.40
878 879 5.057819 GGATAGGGAGACGGAGAATTTTTC 58.942 45.833 0.00 0.00 0.00 2.29
884 885 0.178998 CGGGATAGGGAGACGGAGAA 60.179 60.000 0.00 0.00 0.00 2.87
885 886 1.058428 TCGGGATAGGGAGACGGAGA 61.058 60.000 0.00 0.00 0.00 3.71
918 919 2.752903 ACAAAGATTTCCCCGTATGTGC 59.247 45.455 0.00 0.00 0.00 4.57
938 939 3.909776 GCCGGGCCAAAGTATAAATAC 57.090 47.619 8.12 0.00 0.00 1.89
990 991 2.645838 AGGAACCCATGGATCAATCG 57.354 50.000 15.22 0.00 0.00 3.34
1209 1242 3.513515 GGAATGGTTATTCAGGGCAACAA 59.486 43.478 0.00 0.00 43.62 2.83
1210 1243 3.096092 GGAATGGTTATTCAGGGCAACA 58.904 45.455 0.00 0.00 43.62 3.33
1211 1244 3.096092 TGGAATGGTTATTCAGGGCAAC 58.904 45.455 0.00 0.00 43.62 4.17
1300 1333 2.192263 GAAGGGGATGTCCTCTCTGTT 58.808 52.381 1.05 0.00 45.88 3.16
1315 1360 0.037605 AGCGTACAAGTTCGGAAGGG 60.038 55.000 1.64 0.00 0.00 3.95
1328 1373 1.624323 GCGATGTCGACAAGCGTAC 59.376 57.895 31.11 19.25 43.02 3.67
1399 1452 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
1408 1461 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1409 1462 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1410 1463 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1411 1464 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1412 1465 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1413 1466 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
1414 1467 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
1415 1468 5.804944 ATGAGAGAGAGAGAGAGAGAGAG 57.195 47.826 0.00 0.00 0.00 3.20
1416 1469 6.136155 TGTATGAGAGAGAGAGAGAGAGAGA 58.864 44.000 0.00 0.00 0.00 3.10
1417 1470 6.410942 TGTATGAGAGAGAGAGAGAGAGAG 57.589 45.833 0.00 0.00 0.00 3.20
1418 1471 6.014242 GGATGTATGAGAGAGAGAGAGAGAGA 60.014 46.154 0.00 0.00 0.00 3.10
1419 1472 6.169094 GGATGTATGAGAGAGAGAGAGAGAG 58.831 48.000 0.00 0.00 0.00 3.20
1420 1473 5.606329 TGGATGTATGAGAGAGAGAGAGAGA 59.394 44.000 0.00 0.00 0.00 3.10
1421 1474 5.868454 TGGATGTATGAGAGAGAGAGAGAG 58.132 45.833 0.00 0.00 0.00 3.20
1422 1475 5.221904 CCTGGATGTATGAGAGAGAGAGAGA 60.222 48.000 0.00 0.00 0.00 3.10
1423 1476 5.005740 CCTGGATGTATGAGAGAGAGAGAG 58.994 50.000 0.00 0.00 0.00 3.20
1477 1548 1.280886 GCATCGCAGCGATCGATCTT 61.281 55.000 27.55 2.73 45.19 2.40
1531 1602 2.038387 TCATCTCCGATGTCGACTGA 57.962 50.000 17.92 6.44 43.02 3.41
1690 1762 4.408182 AGTACCTAAGATGGTGCATGTC 57.592 45.455 0.00 0.00 43.69 3.06
1734 1806 3.193903 TGGCTAGCAAACATAGTACGTCA 59.806 43.478 18.24 0.00 0.00 4.35
1782 1884 7.874016 AGATAGAGAGAGAATTAGCTGCAAATG 59.126 37.037 1.02 0.00 0.00 2.32
1784 1886 7.287466 AGAGATAGAGAGAGAATTAGCTGCAAA 59.713 37.037 1.02 0.00 0.00 3.68
1809 1911 6.481644 GGCTTTCCTGTTGACATTATAGAGAG 59.518 42.308 0.00 0.00 0.00 3.20
1940 2043 3.492756 GCATATCTCTCTTGCGGAAGAAC 59.507 47.826 20.33 0.00 37.77 3.01
2139 2306 9.128107 CTTGTGCACATTAAATTTCGAAATACT 57.872 29.630 22.39 15.44 0.00 2.12
2140 2307 9.123709 TCTTGTGCACATTAAATTTCGAAATAC 57.876 29.630 22.39 14.17 0.00 1.89
2242 2495 4.617959 CTCGGCCGAGAGAAATATAACAA 58.382 43.478 45.28 10.73 44.53 2.83
2277 2530 4.508662 ACACAAAAGGCTAGCTAGTCATC 58.491 43.478 26.47 11.72 0.00 2.92
2307 2560 0.657840 GCATAACGTCTCCATGGCAC 59.342 55.000 6.96 5.17 0.00 5.01
2324 2577 6.537301 CGTAGGAAAAACACATTAGGATAGCA 59.463 38.462 0.00 0.00 0.00 3.49
2346 2599 6.555812 ACTCGATCAATATGTTCTAGCGTA 57.444 37.500 0.00 0.00 0.00 4.42
2379 2632 3.545703 GAACAGTTGATACCATGGGAGG 58.454 50.000 18.09 0.00 0.00 4.30
2426 2679 8.155821 AGGTATGTTATCGGAGATATATCGTG 57.844 38.462 7.08 1.90 45.12 4.35
2435 2688 7.724506 AGATTAACAGAGGTATGTTATCGGAGA 59.275 37.037 0.00 0.00 43.30 3.71
2443 2696 5.934402 ACGGAGATTAACAGAGGTATGTT 57.066 39.130 0.00 0.00 45.19 2.71
2490 2743 5.459536 AGGAGTTTTCAAATTGGAGAAGC 57.540 39.130 0.00 0.00 0.00 3.86
2540 2793 3.806949 AAACCCAAGTGCTCTGGATTA 57.193 42.857 0.00 0.00 0.00 1.75
2548 2801 3.549730 GGCCAAAACCCAAGTGCT 58.450 55.556 0.00 0.00 0.00 4.40
2558 2811 0.395862 TGAACGGTGAAGGGCCAAAA 60.396 50.000 6.18 0.00 0.00 2.44
2571 2824 3.806316 AATAGAGCGTTGTTTGAACGG 57.194 42.857 8.84 0.00 43.25 4.44
2621 2874 5.491070 AGTTTCGTCATCATTTGAGATGGA 58.509 37.500 4.33 0.00 44.30 3.41
2652 2905 6.767524 ATTGTTCTCTCTAGTACTCAGTGG 57.232 41.667 0.00 0.00 0.00 4.00
2674 2927 7.712797 AGGAACGTTGATGAAAAACTTACAAT 58.287 30.769 5.00 0.00 0.00 2.71
2694 2947 5.181433 GGTCTTCCTTTAACACATGAGGAAC 59.819 44.000 0.00 0.00 41.91 3.62
2698 2951 4.389077 GTCGGTCTTCCTTTAACACATGAG 59.611 45.833 0.00 0.00 0.00 2.90
2700 2953 3.435671 GGTCGGTCTTCCTTTAACACATG 59.564 47.826 0.00 0.00 0.00 3.21
2709 2962 1.075698 TGAGAGAGGTCGGTCTTCCTT 59.924 52.381 0.00 0.00 33.83 3.36
2719 2972 1.251527 TTCAGGGCGTGAGAGAGGTC 61.252 60.000 10.06 0.00 36.21 3.85
2720 2973 1.228894 TTCAGGGCGTGAGAGAGGT 60.229 57.895 10.06 0.00 36.21 3.85
2731 2984 1.882623 CCTGTTTCAAGACTTCAGGGC 59.117 52.381 11.25 0.00 41.10 5.19
2737 2990 3.279434 ACGAAAGCCTGTTTCAAGACTT 58.721 40.909 0.00 0.00 0.00 3.01
2739 2992 2.031944 GGACGAAAGCCTGTTTCAAGAC 60.032 50.000 0.00 0.00 0.00 3.01
2750 3003 3.286329 TTATAAAGGGGGACGAAAGCC 57.714 47.619 0.00 0.00 0.00 4.35
2777 3030 0.031994 ATCAGTTTGGCCGTTTGTGC 59.968 50.000 0.00 0.00 0.00 4.57
2778 3031 2.292016 TGTATCAGTTTGGCCGTTTGTG 59.708 45.455 0.00 0.00 0.00 3.33
2779 3032 2.292292 GTGTATCAGTTTGGCCGTTTGT 59.708 45.455 0.00 0.00 0.00 2.83
2780 3033 2.292016 TGTGTATCAGTTTGGCCGTTTG 59.708 45.455 0.00 0.00 0.00 2.93
2781 3034 2.552315 CTGTGTATCAGTTTGGCCGTTT 59.448 45.455 0.00 0.00 39.17 3.60
2821 3074 4.918810 ATTTTTCTTTCGACCTGCTTGT 57.081 36.364 0.00 0.00 0.00 3.16
2822 3075 7.555582 GTTTTATTTTTCTTTCGACCTGCTTG 58.444 34.615 0.00 0.00 0.00 4.01
2823 3076 6.416750 CGTTTTATTTTTCTTTCGACCTGCTT 59.583 34.615 0.00 0.00 0.00 3.91
2824 3077 5.912955 CGTTTTATTTTTCTTTCGACCTGCT 59.087 36.000 0.00 0.00 0.00 4.24
2825 3078 5.116528 CCGTTTTATTTTTCTTTCGACCTGC 59.883 40.000 0.00 0.00 0.00 4.85
2826 3079 5.116528 GCCGTTTTATTTTTCTTTCGACCTG 59.883 40.000 0.00 0.00 0.00 4.00
2827 3080 5.217393 GCCGTTTTATTTTTCTTTCGACCT 58.783 37.500 0.00 0.00 0.00 3.85
2828 3081 4.977347 TGCCGTTTTATTTTTCTTTCGACC 59.023 37.500 0.00 0.00 0.00 4.79
2829 3082 5.684184 ACTGCCGTTTTATTTTTCTTTCGAC 59.316 36.000 0.00 0.00 0.00 4.20
2830 3083 5.683743 CACTGCCGTTTTATTTTTCTTTCGA 59.316 36.000 0.00 0.00 0.00 3.71
2831 3084 5.683743 TCACTGCCGTTTTATTTTTCTTTCG 59.316 36.000 0.00 0.00 0.00 3.46
2832 3085 7.595130 AGATCACTGCCGTTTTATTTTTCTTTC 59.405 33.333 0.00 0.00 0.00 2.62
2833 3086 7.433680 AGATCACTGCCGTTTTATTTTTCTTT 58.566 30.769 0.00 0.00 0.00 2.52
2834 3087 6.981722 AGATCACTGCCGTTTTATTTTTCTT 58.018 32.000 0.00 0.00 0.00 2.52
2835 3088 6.575162 AGATCACTGCCGTTTTATTTTTCT 57.425 33.333 0.00 0.00 0.00 2.52
2836 3089 7.481798 CACTAGATCACTGCCGTTTTATTTTTC 59.518 37.037 0.00 0.00 0.00 2.29
2837 3090 7.305474 CACTAGATCACTGCCGTTTTATTTTT 58.695 34.615 0.00 0.00 0.00 1.94
2838 3091 6.128007 CCACTAGATCACTGCCGTTTTATTTT 60.128 38.462 0.00 0.00 0.00 1.82
2839 3092 5.354234 CCACTAGATCACTGCCGTTTTATTT 59.646 40.000 0.00 0.00 0.00 1.40
2840 3093 4.876107 CCACTAGATCACTGCCGTTTTATT 59.124 41.667 0.00 0.00 0.00 1.40
2841 3094 4.442706 CCACTAGATCACTGCCGTTTTAT 58.557 43.478 0.00 0.00 0.00 1.40
2842 3095 3.857052 CCACTAGATCACTGCCGTTTTA 58.143 45.455 0.00 0.00 0.00 1.52
2843 3096 2.699954 CCACTAGATCACTGCCGTTTT 58.300 47.619 0.00 0.00 0.00 2.43
2844 3097 1.676014 GCCACTAGATCACTGCCGTTT 60.676 52.381 0.00 0.00 0.00 3.60
2845 3098 0.108138 GCCACTAGATCACTGCCGTT 60.108 55.000 0.00 0.00 0.00 4.44
2846 3099 1.257750 TGCCACTAGATCACTGCCGT 61.258 55.000 0.00 0.00 0.00 5.68
2847 3100 0.807667 GTGCCACTAGATCACTGCCG 60.808 60.000 0.00 0.00 0.00 5.69
2848 3101 0.250234 TGTGCCACTAGATCACTGCC 59.750 55.000 0.00 0.00 0.00 4.85
2849 3102 1.363744 GTGTGCCACTAGATCACTGC 58.636 55.000 0.00 0.00 0.00 4.40
2850 3103 1.067565 ACGTGTGCCACTAGATCACTG 60.068 52.381 0.00 1.79 31.34 3.66
2851 3104 1.257743 ACGTGTGCCACTAGATCACT 58.742 50.000 0.00 0.00 31.34 3.41
2852 3105 2.527100 GTACGTGTGCCACTAGATCAC 58.473 52.381 0.00 1.85 31.34 3.06
2853 3106 1.475280 GGTACGTGTGCCACTAGATCA 59.525 52.381 0.00 0.00 35.28 2.92
2854 3107 1.475280 TGGTACGTGTGCCACTAGATC 59.525 52.381 5.66 0.00 40.47 2.75
2855 3108 1.552578 TGGTACGTGTGCCACTAGAT 58.447 50.000 5.66 0.00 40.47 1.98
2856 3109 3.039452 TGGTACGTGTGCCACTAGA 57.961 52.632 5.66 0.00 40.47 2.43
2861 3114 0.033781 GGTTAGTGGTACGTGTGCCA 59.966 55.000 5.66 5.66 43.13 4.92
2862 3115 0.671472 GGGTTAGTGGTACGTGTGCC 60.671 60.000 0.00 0.00 35.78 5.01
2863 3116 0.033781 TGGGTTAGTGGTACGTGTGC 59.966 55.000 0.00 0.00 0.00 4.57
2864 3117 2.137523 GTTGGGTTAGTGGTACGTGTG 58.862 52.381 0.00 0.00 0.00 3.82
2865 3118 1.761784 TGTTGGGTTAGTGGTACGTGT 59.238 47.619 0.00 0.00 0.00 4.49
2866 3119 2.137523 GTGTTGGGTTAGTGGTACGTG 58.862 52.381 0.00 0.00 0.00 4.49
2867 3120 2.041701 AGTGTTGGGTTAGTGGTACGT 58.958 47.619 0.00 0.00 0.00 3.57
2868 3121 2.036217 TCAGTGTTGGGTTAGTGGTACG 59.964 50.000 0.00 0.00 0.00 3.67
2869 3122 3.756933 TCAGTGTTGGGTTAGTGGTAC 57.243 47.619 0.00 0.00 0.00 3.34
2870 3123 3.455177 TGTTCAGTGTTGGGTTAGTGGTA 59.545 43.478 0.00 0.00 0.00 3.25
2871 3124 2.240160 TGTTCAGTGTTGGGTTAGTGGT 59.760 45.455 0.00 0.00 0.00 4.16
2872 3125 2.878406 CTGTTCAGTGTTGGGTTAGTGG 59.122 50.000 0.00 0.00 0.00 4.00
2873 3126 2.878406 CCTGTTCAGTGTTGGGTTAGTG 59.122 50.000 0.00 0.00 0.00 2.74
2874 3127 2.775384 TCCTGTTCAGTGTTGGGTTAGT 59.225 45.455 0.00 0.00 0.00 2.24
2875 3128 3.485463 TCCTGTTCAGTGTTGGGTTAG 57.515 47.619 0.00 0.00 0.00 2.34
2876 3129 3.935818 TTCCTGTTCAGTGTTGGGTTA 57.064 42.857 0.00 0.00 0.00 2.85
2877 3130 2.758423 GTTTCCTGTTCAGTGTTGGGTT 59.242 45.455 0.00 0.00 0.00 4.11
2878 3131 2.375146 GTTTCCTGTTCAGTGTTGGGT 58.625 47.619 0.00 0.00 0.00 4.51
2879 3132 1.681264 GGTTTCCTGTTCAGTGTTGGG 59.319 52.381 0.00 0.00 0.00 4.12
2880 3133 2.358898 CTGGTTTCCTGTTCAGTGTTGG 59.641 50.000 0.00 0.00 0.00 3.77
2881 3134 2.358898 CCTGGTTTCCTGTTCAGTGTTG 59.641 50.000 0.00 0.00 0.00 3.33
2882 3135 2.241176 TCCTGGTTTCCTGTTCAGTGTT 59.759 45.455 0.00 0.00 0.00 3.32
2883 3136 1.843851 TCCTGGTTTCCTGTTCAGTGT 59.156 47.619 0.00 0.00 0.00 3.55
2884 3137 2.104792 TCTCCTGGTTTCCTGTTCAGTG 59.895 50.000 0.00 0.00 0.00 3.66
2885 3138 2.104963 GTCTCCTGGTTTCCTGTTCAGT 59.895 50.000 0.00 0.00 0.00 3.41
2886 3139 2.104792 TGTCTCCTGGTTTCCTGTTCAG 59.895 50.000 0.00 0.00 0.00 3.02
2887 3140 2.123589 TGTCTCCTGGTTTCCTGTTCA 58.876 47.619 0.00 0.00 0.00 3.18
2888 3141 2.495084 GTGTCTCCTGGTTTCCTGTTC 58.505 52.381 0.00 0.00 0.00 3.18
2889 3142 1.143073 GGTGTCTCCTGGTTTCCTGTT 59.857 52.381 0.00 0.00 0.00 3.16
2890 3143 0.765510 GGTGTCTCCTGGTTTCCTGT 59.234 55.000 0.00 0.00 0.00 4.00
2891 3144 0.764890 TGGTGTCTCCTGGTTTCCTG 59.235 55.000 0.00 0.00 37.07 3.86
2892 3145 1.630878 GATGGTGTCTCCTGGTTTCCT 59.369 52.381 0.00 0.00 37.07 3.36
2893 3146 1.340114 GGATGGTGTCTCCTGGTTTCC 60.340 57.143 0.00 0.00 37.07 3.13
2894 3147 1.340114 GGGATGGTGTCTCCTGGTTTC 60.340 57.143 0.00 0.00 37.07 2.78
2895 3148 0.698818 GGGATGGTGTCTCCTGGTTT 59.301 55.000 0.00 0.00 37.07 3.27
2896 3149 0.178861 AGGGATGGTGTCTCCTGGTT 60.179 55.000 0.00 0.00 37.07 3.67
2897 3150 0.716591 TAGGGATGGTGTCTCCTGGT 59.283 55.000 0.00 0.00 37.07 4.00
2898 3151 1.486726 GTTAGGGATGGTGTCTCCTGG 59.513 57.143 0.00 0.00 37.07 4.45
2899 3152 2.093447 GTGTTAGGGATGGTGTCTCCTG 60.093 54.545 0.00 0.00 37.07 3.86
2900 3153 2.188817 GTGTTAGGGATGGTGTCTCCT 58.811 52.381 0.00 0.00 37.07 3.69
2901 3154 1.906574 TGTGTTAGGGATGGTGTCTCC 59.093 52.381 0.00 0.00 0.00 3.71
2902 3155 3.914426 ATGTGTTAGGGATGGTGTCTC 57.086 47.619 0.00 0.00 0.00 3.36
2903 3156 4.534500 TGTTATGTGTTAGGGATGGTGTCT 59.466 41.667 0.00 0.00 0.00 3.41
2904 3157 4.634443 GTGTTATGTGTTAGGGATGGTGTC 59.366 45.833 0.00 0.00 0.00 3.67
2905 3158 4.566907 GGTGTTATGTGTTAGGGATGGTGT 60.567 45.833 0.00 0.00 0.00 4.16
2906 3159 3.945285 GGTGTTATGTGTTAGGGATGGTG 59.055 47.826 0.00 0.00 0.00 4.17
2907 3160 3.053917 GGGTGTTATGTGTTAGGGATGGT 60.054 47.826 0.00 0.00 0.00 3.55
2908 3161 3.053991 TGGGTGTTATGTGTTAGGGATGG 60.054 47.826 0.00 0.00 0.00 3.51
2909 3162 3.945285 GTGGGTGTTATGTGTTAGGGATG 59.055 47.826 0.00 0.00 0.00 3.51
2910 3163 3.850173 AGTGGGTGTTATGTGTTAGGGAT 59.150 43.478 0.00 0.00 0.00 3.85
2911 3164 3.253220 AGTGGGTGTTATGTGTTAGGGA 58.747 45.455 0.00 0.00 0.00 4.20
2912 3165 3.713826 AGTGGGTGTTATGTGTTAGGG 57.286 47.619 0.00 0.00 0.00 3.53
2913 3166 5.416271 AGTAGTGGGTGTTATGTGTTAGG 57.584 43.478 0.00 0.00 0.00 2.69
2914 3167 7.033791 CAGTAGTAGTGGGTGTTATGTGTTAG 58.966 42.308 0.00 0.00 0.00 2.34
2915 3168 6.071221 CCAGTAGTAGTGGGTGTTATGTGTTA 60.071 42.308 15.42 0.00 35.02 2.41
2916 3169 5.279809 CCAGTAGTAGTGGGTGTTATGTGTT 60.280 44.000 15.42 0.00 35.02 3.32
2917 3170 4.222145 CCAGTAGTAGTGGGTGTTATGTGT 59.778 45.833 15.42 0.00 35.02 3.72
2918 3171 4.464951 TCCAGTAGTAGTGGGTGTTATGTG 59.535 45.833 21.59 0.00 39.21 3.21
2919 3172 4.465305 GTCCAGTAGTAGTGGGTGTTATGT 59.535 45.833 21.59 0.00 39.21 2.29
2920 3173 4.464951 TGTCCAGTAGTAGTGGGTGTTATG 59.535 45.833 21.59 0.00 39.21 1.90
2921 3174 4.680407 TGTCCAGTAGTAGTGGGTGTTAT 58.320 43.478 21.59 0.00 39.21 1.89
2922 3175 4.116782 TGTCCAGTAGTAGTGGGTGTTA 57.883 45.455 21.59 1.57 39.21 2.41
2923 3176 2.966915 TGTCCAGTAGTAGTGGGTGTT 58.033 47.619 21.59 0.00 39.21 3.32
2924 3177 2.688902 TGTCCAGTAGTAGTGGGTGT 57.311 50.000 21.59 0.00 39.21 4.16
2925 3178 3.056749 GTCTTGTCCAGTAGTAGTGGGTG 60.057 52.174 21.59 10.77 39.21 4.61
2926 3179 3.163467 GTCTTGTCCAGTAGTAGTGGGT 58.837 50.000 21.59 0.00 39.21 4.51
2927 3180 2.496470 GGTCTTGTCCAGTAGTAGTGGG 59.504 54.545 21.59 7.73 39.21 4.61
2928 3181 2.163815 CGGTCTTGTCCAGTAGTAGTGG 59.836 54.545 16.88 16.88 40.10 4.00
2929 3182 2.163815 CCGGTCTTGTCCAGTAGTAGTG 59.836 54.545 0.00 0.00 0.00 2.74
2930 3183 2.040813 TCCGGTCTTGTCCAGTAGTAGT 59.959 50.000 0.00 0.00 0.00 2.73
2931 3184 2.683867 CTCCGGTCTTGTCCAGTAGTAG 59.316 54.545 0.00 0.00 0.00 2.57
2932 3185 2.719739 CTCCGGTCTTGTCCAGTAGTA 58.280 52.381 0.00 0.00 0.00 1.82
2933 3186 1.546961 CTCCGGTCTTGTCCAGTAGT 58.453 55.000 0.00 0.00 0.00 2.73
2934 3187 0.173708 GCTCCGGTCTTGTCCAGTAG 59.826 60.000 0.00 0.00 0.00 2.57
2935 3188 1.255667 GGCTCCGGTCTTGTCCAGTA 61.256 60.000 0.00 0.00 0.00 2.74
2936 3189 2.584391 GGCTCCGGTCTTGTCCAGT 61.584 63.158 0.00 0.00 0.00 4.00
2937 3190 2.111999 TTGGCTCCGGTCTTGTCCAG 62.112 60.000 0.00 0.00 0.00 3.86
2938 3191 2.111999 CTTGGCTCCGGTCTTGTCCA 62.112 60.000 0.00 0.00 0.00 4.02
2939 3192 1.376037 CTTGGCTCCGGTCTTGTCC 60.376 63.158 0.00 0.00 0.00 4.02
2940 3193 2.035442 GCTTGGCTCCGGTCTTGTC 61.035 63.158 0.00 0.00 0.00 3.18
2941 3194 2.032681 GCTTGGCTCCGGTCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
2942 3195 2.747855 GGCTTGGCTCCGGTCTTG 60.748 66.667 0.00 0.00 0.00 3.02
2943 3196 4.394712 CGGCTTGGCTCCGGTCTT 62.395 66.667 0.00 0.00 42.99 3.01
2952 3205 2.268076 TTTCTTCAGGCGGCTTGGC 61.268 57.895 9.66 0.00 45.27 4.52
2953 3206 1.581447 GTTTCTTCAGGCGGCTTGG 59.419 57.895 9.66 0.00 0.00 3.61
2954 3207 1.172180 TGGTTTCTTCAGGCGGCTTG 61.172 55.000 9.66 5.64 0.00 4.01
2955 3208 1.150536 TGGTTTCTTCAGGCGGCTT 59.849 52.632 9.66 0.00 0.00 4.35
2956 3209 1.600916 GTGGTTTCTTCAGGCGGCT 60.601 57.895 5.25 5.25 0.00 5.52
2957 3210 2.626780 GGTGGTTTCTTCAGGCGGC 61.627 63.158 0.00 0.00 0.00 6.53
2958 3211 2.325082 CGGTGGTTTCTTCAGGCGG 61.325 63.158 0.00 0.00 0.00 6.13
2959 3212 2.325082 CCGGTGGTTTCTTCAGGCG 61.325 63.158 0.00 0.00 0.00 5.52
2960 3213 1.228154 ACCGGTGGTTTCTTCAGGC 60.228 57.895 6.12 0.00 27.29 4.85
2961 3214 0.107831 TGACCGGTGGTTTCTTCAGG 59.892 55.000 14.63 0.00 35.25 3.86
2962 3215 1.226746 GTGACCGGTGGTTTCTTCAG 58.773 55.000 14.63 0.00 35.25 3.02
2963 3216 0.179040 GGTGACCGGTGGTTTCTTCA 60.179 55.000 14.63 0.00 35.25 3.02
2964 3217 0.179040 TGGTGACCGGTGGTTTCTTC 60.179 55.000 14.63 0.00 35.25 2.87
2965 3218 0.476771 ATGGTGACCGGTGGTTTCTT 59.523 50.000 14.63 0.00 35.25 2.52
2966 3219 0.250727 CATGGTGACCGGTGGTTTCT 60.251 55.000 14.63 0.00 35.25 2.52
2967 3220 1.241315 CCATGGTGACCGGTGGTTTC 61.241 60.000 14.63 0.00 35.25 2.78
2968 3221 1.228429 CCATGGTGACCGGTGGTTT 60.228 57.895 14.63 0.00 35.25 3.27
2969 3222 1.128809 TACCATGGTGACCGGTGGTT 61.129 55.000 28.71 16.77 40.56 3.67
2970 3223 1.536907 TACCATGGTGACCGGTGGT 60.537 57.895 28.17 27.31 43.90 4.16
2971 3224 1.078708 GTACCATGGTGACCGGTGG 60.079 63.158 28.17 20.29 37.73 4.61
2972 3225 1.078708 GGTACCATGGTGACCGGTG 60.079 63.158 28.17 5.74 36.58 4.94
2973 3226 3.395630 GGTACCATGGTGACCGGT 58.604 61.111 28.17 6.92 38.55 5.28
2976 3229 0.392060 GGTTCGGTACCATGGTGACC 60.392 60.000 28.17 25.20 46.92 4.02
2977 3230 3.148340 GGTTCGGTACCATGGTGAC 57.852 57.895 28.17 19.30 46.92 3.67
2986 3239 0.589708 GCTTGGTGTTGGTTCGGTAC 59.410 55.000 0.00 0.00 0.00 3.34
2987 3240 0.535553 GGCTTGGTGTTGGTTCGGTA 60.536 55.000 0.00 0.00 0.00 4.02
2988 3241 1.826487 GGCTTGGTGTTGGTTCGGT 60.826 57.895 0.00 0.00 0.00 4.69
2989 3242 1.388065 TTGGCTTGGTGTTGGTTCGG 61.388 55.000 0.00 0.00 0.00 4.30
2990 3243 0.248866 GTTGGCTTGGTGTTGGTTCG 60.249 55.000 0.00 0.00 0.00 3.95
2991 3244 1.067060 GAGTTGGCTTGGTGTTGGTTC 59.933 52.381 0.00 0.00 0.00 3.62
2992 3245 1.111277 GAGTTGGCTTGGTGTTGGTT 58.889 50.000 0.00 0.00 0.00 3.67
2993 3246 0.755327 GGAGTTGGCTTGGTGTTGGT 60.755 55.000 0.00 0.00 0.00 3.67
2994 3247 1.795170 CGGAGTTGGCTTGGTGTTGG 61.795 60.000 0.00 0.00 0.00 3.77
2995 3248 1.654220 CGGAGTTGGCTTGGTGTTG 59.346 57.895 0.00 0.00 0.00 3.33
2996 3249 1.528309 CCGGAGTTGGCTTGGTGTT 60.528 57.895 0.00 0.00 0.00 3.32
2997 3250 1.990160 TTCCGGAGTTGGCTTGGTGT 61.990 55.000 3.34 0.00 0.00 4.16
2998 3251 0.821711 TTTCCGGAGTTGGCTTGGTG 60.822 55.000 3.34 0.00 0.00 4.17
2999 3252 0.537371 CTTTCCGGAGTTGGCTTGGT 60.537 55.000 3.34 0.00 0.00 3.67
3000 3253 1.244019 CCTTTCCGGAGTTGGCTTGG 61.244 60.000 3.34 0.00 33.16 3.61
3001 3254 0.250727 TCCTTTCCGGAGTTGGCTTG 60.251 55.000 3.34 0.00 36.69 4.01
3002 3255 0.250770 GTCCTTTCCGGAGTTGGCTT 60.251 55.000 3.34 0.00 44.20 4.35
3003 3256 1.375326 GTCCTTTCCGGAGTTGGCT 59.625 57.895 3.34 0.00 44.20 4.75
3004 3257 1.674651 GGTCCTTTCCGGAGTTGGC 60.675 63.158 3.34 0.00 44.20 4.52
3005 3258 1.375523 CGGTCCTTTCCGGAGTTGG 60.376 63.158 3.34 8.70 44.20 3.77
3006 3259 4.278956 CGGTCCTTTCCGGAGTTG 57.721 61.111 3.34 0.00 44.20 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.