Multiple sequence alignment - TraesCS2D01G585000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G585000 chr2D 100.000 3329 0 0 1 3329 644136812 644140140 0.000000e+00 6148.0
1 TraesCS2D01G585000 chr2D 81.818 935 80 46 2360 3272 644156005 644156871 0.000000e+00 702.0
2 TraesCS2D01G585000 chr2D 81.763 329 36 7 1276 1604 638890062 638889758 1.530000e-63 254.0
3 TraesCS2D01G585000 chr2D 85.106 94 5 6 3189 3281 644149331 644149416 1.650000e-13 87.9
4 TraesCS2D01G585000 chr2D 76.000 200 27 13 2635 2830 644156666 644156848 2.130000e-12 84.2
5 TraesCS2D01G585000 chr2A 94.451 2631 96 31 676 3282 769254387 769256991 0.000000e+00 4004.0
6 TraesCS2D01G585000 chr2A 77.667 703 90 27 1276 1976 764785068 764784431 1.890000e-97 366.0
7 TraesCS2D01G585000 chr2A 97.826 46 1 0 3284 3329 769257016 769257061 2.750000e-11 80.5
8 TraesCS2D01G585000 chr2B 94.846 2309 70 19 724 3008 792978607 792976324 0.000000e+00 3559.0
9 TraesCS2D01G585000 chr2B 93.902 164 10 0 3119 3282 792976325 792976162 7.130000e-62 248.0
10 TraesCS2D01G585000 chr2B 91.200 125 8 3 2947 3070 792973208 792973086 2.050000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G585000 chr2D 644136812 644140140 3328 False 6148.000000 6148 100.0000 1 3329 1 chr2D.!!$F1 3328
1 TraesCS2D01G585000 chr2D 644156005 644156871 866 False 393.100000 702 78.9090 2360 3272 2 chr2D.!!$F3 912
2 TraesCS2D01G585000 chr2A 769254387 769257061 2674 False 2042.250000 4004 96.1385 676 3329 2 chr2A.!!$F1 2653
3 TraesCS2D01G585000 chr2A 764784431 764785068 637 True 366.000000 366 77.6670 1276 1976 1 chr2A.!!$R1 700
4 TraesCS2D01G585000 chr2B 792973086 792978607 5521 True 1324.666667 3559 93.3160 724 3282 3 chr2B.!!$R1 2558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 546 0.176219 ACCGATGGATTTTACGCGGA 59.824 50.0 12.47 0.0 41.11 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 2490 9.264719 CTCTATGCATCAAGACACATGTATAAA 57.735 33.333 0.19 0.0 30.2 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.834168 AGCCTAGTGCAAGCTAAAATTTAA 57.166 33.333 0.00 0.00 44.83 1.52
24 25 7.227049 AGCCTAGTGCAAGCTAAAATTTAAA 57.773 32.000 0.00 0.00 44.83 1.52
25 26 7.090808 AGCCTAGTGCAAGCTAAAATTTAAAC 58.909 34.615 0.00 0.00 44.83 2.01
26 27 6.866248 GCCTAGTGCAAGCTAAAATTTAAACA 59.134 34.615 0.00 0.00 40.77 2.83
27 28 7.062255 GCCTAGTGCAAGCTAAAATTTAAACAG 59.938 37.037 0.00 0.00 40.77 3.16
28 29 7.542130 CCTAGTGCAAGCTAAAATTTAAACAGG 59.458 37.037 0.00 0.00 0.00 4.00
29 30 6.223120 AGTGCAAGCTAAAATTTAAACAGGG 58.777 36.000 0.00 0.00 0.00 4.45
30 31 5.989168 GTGCAAGCTAAAATTTAAACAGGGT 59.011 36.000 0.00 0.00 0.00 4.34
31 32 6.481976 GTGCAAGCTAAAATTTAAACAGGGTT 59.518 34.615 0.00 0.00 0.00 4.11
32 33 7.654116 GTGCAAGCTAAAATTTAAACAGGGTTA 59.346 33.333 0.00 0.00 0.00 2.85
33 34 8.204836 TGCAAGCTAAAATTTAAACAGGGTTAA 58.795 29.630 0.00 0.00 0.00 2.01
34 35 9.047371 GCAAGCTAAAATTTAAACAGGGTTAAA 57.953 29.630 4.86 4.86 37.36 1.52
73 74 9.549509 TTATTGTATTTCGAAACTCAAAATCCG 57.450 29.630 23.53 0.00 0.00 4.18
74 75 6.788684 TGTATTTCGAAACTCAAAATCCGA 57.211 33.333 13.81 0.00 0.00 4.55
75 76 7.192148 TGTATTTCGAAACTCAAAATCCGAA 57.808 32.000 13.81 0.00 34.78 4.30
76 77 7.640852 TGTATTTCGAAACTCAAAATCCGAAA 58.359 30.769 13.81 0.00 45.64 3.46
77 78 7.801315 TGTATTTCGAAACTCAAAATCCGAAAG 59.199 33.333 13.81 0.00 45.08 2.62
78 79 5.994887 TTCGAAACTCAAAATCCGAAAGA 57.005 34.783 0.00 0.00 33.86 2.52
79 80 5.994887 TCGAAACTCAAAATCCGAAAGAA 57.005 34.783 0.00 0.00 0.00 2.52
80 81 5.985781 TCGAAACTCAAAATCCGAAAGAAG 58.014 37.500 0.00 0.00 0.00 2.85
81 82 5.526111 TCGAAACTCAAAATCCGAAAGAAGT 59.474 36.000 0.00 0.00 0.00 3.01
82 83 6.037830 TCGAAACTCAAAATCCGAAAGAAGTT 59.962 34.615 0.00 0.00 0.00 2.66
83 84 6.357240 CGAAACTCAAAATCCGAAAGAAGTTC 59.643 38.462 0.00 0.00 0.00 3.01
84 85 6.944234 AACTCAAAATCCGAAAGAAGTTCT 57.056 33.333 0.00 0.00 33.70 3.01
85 86 6.305693 ACTCAAAATCCGAAAGAAGTTCTG 57.694 37.500 6.06 0.00 33.70 3.02
86 87 6.055588 ACTCAAAATCCGAAAGAAGTTCTGA 58.944 36.000 6.06 0.00 34.42 3.27
87 88 6.712547 ACTCAAAATCCGAAAGAAGTTCTGAT 59.287 34.615 6.06 1.89 34.91 2.90
88 89 7.229506 ACTCAAAATCCGAAAGAAGTTCTGATT 59.770 33.333 6.06 8.11 34.91 2.57
89 90 7.940850 TCAAAATCCGAAAGAAGTTCTGATTT 58.059 30.769 17.12 17.12 34.91 2.17
90 91 8.413229 TCAAAATCCGAAAGAAGTTCTGATTTT 58.587 29.630 23.20 23.20 34.91 1.82
91 92 9.034544 CAAAATCCGAAAGAAGTTCTGATTTTT 57.965 29.630 24.84 15.18 34.91 1.94
92 93 8.579682 AAATCCGAAAGAAGTTCTGATTTTTG 57.420 30.769 17.12 8.44 34.91 2.44
93 94 6.693315 TCCGAAAGAAGTTCTGATTTTTGT 57.307 33.333 6.06 0.00 33.70 2.83
94 95 7.095695 TCCGAAAGAAGTTCTGATTTTTGTT 57.904 32.000 6.06 0.00 33.70 2.83
95 96 7.543756 TCCGAAAGAAGTTCTGATTTTTGTTT 58.456 30.769 6.06 0.00 33.70 2.83
96 97 8.032451 TCCGAAAGAAGTTCTGATTTTTGTTTT 58.968 29.630 6.06 0.00 33.70 2.43
97 98 8.655970 CCGAAAGAAGTTCTGATTTTTGTTTTT 58.344 29.630 6.06 0.00 33.70 1.94
119 120 4.368874 TTGCATATTTTGGTGACATCCG 57.631 40.909 0.00 0.00 42.32 4.18
120 121 2.687425 TGCATATTTTGGTGACATCCGG 59.313 45.455 0.00 0.00 42.32 5.14
121 122 2.948979 GCATATTTTGGTGACATCCGGA 59.051 45.455 6.61 6.61 42.32 5.14
122 123 3.380004 GCATATTTTGGTGACATCCGGAA 59.620 43.478 9.01 0.00 42.32 4.30
123 124 4.142271 GCATATTTTGGTGACATCCGGAAA 60.142 41.667 9.01 0.00 42.32 3.13
124 125 5.451798 GCATATTTTGGTGACATCCGGAAAT 60.452 40.000 9.01 2.49 42.32 2.17
125 126 6.572519 CATATTTTGGTGACATCCGGAAATT 58.427 36.000 9.01 0.00 42.32 1.82
126 127 4.946478 TTTTGGTGACATCCGGAAATTT 57.054 36.364 9.01 0.00 42.32 1.82
127 128 4.513198 TTTGGTGACATCCGGAAATTTC 57.487 40.909 9.01 9.83 42.32 2.17
128 129 3.433306 TGGTGACATCCGGAAATTTCT 57.567 42.857 9.01 0.00 33.40 2.52
129 130 3.343617 TGGTGACATCCGGAAATTTCTC 58.656 45.455 9.01 6.98 33.40 2.87
130 131 2.683362 GGTGACATCCGGAAATTTCTCC 59.317 50.000 9.01 9.10 0.00 3.71
131 132 3.610911 GTGACATCCGGAAATTTCTCCT 58.389 45.455 9.01 0.00 32.82 3.69
132 133 4.010349 GTGACATCCGGAAATTTCTCCTT 58.990 43.478 9.01 0.00 32.82 3.36
133 134 4.459337 GTGACATCCGGAAATTTCTCCTTT 59.541 41.667 9.01 0.00 32.82 3.11
134 135 5.048013 GTGACATCCGGAAATTTCTCCTTTT 60.048 40.000 9.01 0.00 32.82 2.27
135 136 5.183140 TGACATCCGGAAATTTCTCCTTTTC 59.817 40.000 9.01 8.70 32.82 2.29
136 137 4.462834 ACATCCGGAAATTTCTCCTTTTCC 59.537 41.667 9.01 4.69 44.84 3.13
145 146 9.483916 GGAAATTTCTCCTTTTCCGAAATTAAA 57.516 29.630 17.42 0.00 42.98 1.52
149 150 8.651391 TTTCTCCTTTTCCGAAATTAAAAACC 57.349 30.769 0.00 0.00 0.00 3.27
150 151 7.591421 TCTCCTTTTCCGAAATTAAAAACCT 57.409 32.000 0.00 0.00 0.00 3.50
151 152 8.014070 TCTCCTTTTCCGAAATTAAAAACCTT 57.986 30.769 0.00 0.00 0.00 3.50
152 153 9.134055 TCTCCTTTTCCGAAATTAAAAACCTTA 57.866 29.630 0.00 0.00 0.00 2.69
153 154 9.188588 CTCCTTTTCCGAAATTAAAAACCTTAC 57.811 33.333 0.00 0.00 0.00 2.34
154 155 7.861872 TCCTTTTCCGAAATTAAAAACCTTACG 59.138 33.333 0.00 0.00 0.00 3.18
155 156 7.115236 CCTTTTCCGAAATTAAAAACCTTACGG 59.885 37.037 0.00 0.00 39.30 4.02
156 157 6.874288 TTCCGAAATTAAAAACCTTACGGA 57.126 33.333 0.00 0.00 43.75 4.69
157 158 7.451501 TTCCGAAATTAAAAACCTTACGGAT 57.548 32.000 0.00 0.00 44.55 4.18
158 159 6.844254 TCCGAAATTAAAAACCTTACGGATG 58.156 36.000 0.00 0.00 41.32 3.51
159 160 5.513849 CCGAAATTAAAAACCTTACGGATGC 59.486 40.000 0.00 0.00 40.16 3.91
160 161 6.319399 CGAAATTAAAAACCTTACGGATGCT 58.681 36.000 0.00 0.00 0.00 3.79
161 162 6.804783 CGAAATTAAAAACCTTACGGATGCTT 59.195 34.615 0.00 0.00 0.00 3.91
162 163 7.964011 CGAAATTAAAAACCTTACGGATGCTTA 59.036 33.333 0.00 0.00 0.00 3.09
163 164 9.285770 GAAATTAAAAACCTTACGGATGCTTAG 57.714 33.333 0.00 0.00 0.00 2.18
164 165 8.570068 AATTAAAAACCTTACGGATGCTTAGA 57.430 30.769 0.00 0.00 0.00 2.10
165 166 8.747538 ATTAAAAACCTTACGGATGCTTAGAT 57.252 30.769 0.00 0.00 0.00 1.98
166 167 8.570068 TTAAAAACCTTACGGATGCTTAGATT 57.430 30.769 0.00 0.00 0.00 2.40
167 168 7.462571 AAAAACCTTACGGATGCTTAGATTT 57.537 32.000 0.00 0.00 0.00 2.17
168 169 6.436843 AAACCTTACGGATGCTTAGATTTG 57.563 37.500 0.00 0.00 0.00 2.32
169 170 3.877508 ACCTTACGGATGCTTAGATTTGC 59.122 43.478 0.00 0.00 0.00 3.68
170 171 4.130118 CCTTACGGATGCTTAGATTTGCT 58.870 43.478 0.00 0.00 0.00 3.91
171 172 4.212214 CCTTACGGATGCTTAGATTTGCTC 59.788 45.833 0.00 0.00 0.00 4.26
172 173 2.565841 ACGGATGCTTAGATTTGCTCC 58.434 47.619 0.00 0.00 0.00 4.70
173 174 2.171448 ACGGATGCTTAGATTTGCTCCT 59.829 45.455 0.00 0.00 0.00 3.69
174 175 3.209410 CGGATGCTTAGATTTGCTCCTT 58.791 45.455 0.00 0.00 0.00 3.36
175 176 3.629398 CGGATGCTTAGATTTGCTCCTTT 59.371 43.478 0.00 0.00 0.00 3.11
176 177 4.096984 CGGATGCTTAGATTTGCTCCTTTT 59.903 41.667 0.00 0.00 0.00 2.27
177 178 5.586339 GGATGCTTAGATTTGCTCCTTTTC 58.414 41.667 0.00 0.00 0.00 2.29
178 179 5.126061 GGATGCTTAGATTTGCTCCTTTTCA 59.874 40.000 0.00 0.00 0.00 2.69
179 180 6.183360 GGATGCTTAGATTTGCTCCTTTTCAT 60.183 38.462 0.00 0.00 0.00 2.57
180 181 6.199937 TGCTTAGATTTGCTCCTTTTCATC 57.800 37.500 0.00 0.00 0.00 2.92
181 182 5.948162 TGCTTAGATTTGCTCCTTTTCATCT 59.052 36.000 0.00 0.00 0.00 2.90
182 183 6.094603 TGCTTAGATTTGCTCCTTTTCATCTC 59.905 38.462 0.00 0.00 0.00 2.75
183 184 6.318396 GCTTAGATTTGCTCCTTTTCATCTCT 59.682 38.462 0.00 0.00 0.00 3.10
184 185 7.497249 GCTTAGATTTGCTCCTTTTCATCTCTA 59.503 37.037 0.00 0.00 0.00 2.43
185 186 8.723942 TTAGATTTGCTCCTTTTCATCTCTAC 57.276 34.615 0.00 0.00 0.00 2.59
186 187 6.956497 AGATTTGCTCCTTTTCATCTCTACT 58.044 36.000 0.00 0.00 0.00 2.57
187 188 7.401246 AGATTTGCTCCTTTTCATCTCTACTT 58.599 34.615 0.00 0.00 0.00 2.24
188 189 8.543774 AGATTTGCTCCTTTTCATCTCTACTTA 58.456 33.333 0.00 0.00 0.00 2.24
189 190 7.907214 TTTGCTCCTTTTCATCTCTACTTAC 57.093 36.000 0.00 0.00 0.00 2.34
190 191 6.859112 TGCTCCTTTTCATCTCTACTTACT 57.141 37.500 0.00 0.00 0.00 2.24
191 192 7.246171 TGCTCCTTTTCATCTCTACTTACTT 57.754 36.000 0.00 0.00 0.00 2.24
192 193 7.680730 TGCTCCTTTTCATCTCTACTTACTTT 58.319 34.615 0.00 0.00 0.00 2.66
193 194 7.604164 TGCTCCTTTTCATCTCTACTTACTTTG 59.396 37.037 0.00 0.00 0.00 2.77
194 195 7.604545 GCTCCTTTTCATCTCTACTTACTTTGT 59.395 37.037 0.00 0.00 0.00 2.83
195 196 8.833231 TCCTTTTCATCTCTACTTACTTTGTG 57.167 34.615 0.00 0.00 0.00 3.33
196 197 8.429641 TCCTTTTCATCTCTACTTACTTTGTGT 58.570 33.333 0.00 0.00 0.00 3.72
197 198 9.057089 CCTTTTCATCTCTACTTACTTTGTGTT 57.943 33.333 0.00 0.00 0.00 3.32
200 201 8.958119 TTCATCTCTACTTACTTTGTGTTTGT 57.042 30.769 0.00 0.00 0.00 2.83
201 202 8.365399 TCATCTCTACTTACTTTGTGTTTGTG 57.635 34.615 0.00 0.00 0.00 3.33
202 203 7.985184 TCATCTCTACTTACTTTGTGTTTGTGT 59.015 33.333 0.00 0.00 0.00 3.72
203 204 9.256477 CATCTCTACTTACTTTGTGTTTGTGTA 57.744 33.333 0.00 0.00 0.00 2.90
204 205 9.998106 ATCTCTACTTACTTTGTGTTTGTGTAT 57.002 29.630 0.00 0.00 0.00 2.29
205 206 9.826574 TCTCTACTTACTTTGTGTTTGTGTATT 57.173 29.630 0.00 0.00 0.00 1.89
208 209 9.807386 CTACTTACTTTGTGTTTGTGTATTAGC 57.193 33.333 0.00 0.00 0.00 3.09
209 210 8.446599 ACTTACTTTGTGTTTGTGTATTAGCT 57.553 30.769 0.00 0.00 0.00 3.32
210 211 8.899771 ACTTACTTTGTGTTTGTGTATTAGCTT 58.100 29.630 0.00 0.00 0.00 3.74
211 212 9.730420 CTTACTTTGTGTTTGTGTATTAGCTTT 57.270 29.630 0.00 0.00 0.00 3.51
212 213 7.985634 ACTTTGTGTTTGTGTATTAGCTTTG 57.014 32.000 0.00 0.00 0.00 2.77
213 214 7.543756 ACTTTGTGTTTGTGTATTAGCTTTGT 58.456 30.769 0.00 0.00 0.00 2.83
214 215 8.032451 ACTTTGTGTTTGTGTATTAGCTTTGTT 58.968 29.630 0.00 0.00 0.00 2.83
215 216 8.764524 TTTGTGTTTGTGTATTAGCTTTGTTT 57.235 26.923 0.00 0.00 0.00 2.83
216 217 8.764524 TTGTGTTTGTGTATTAGCTTTGTTTT 57.235 26.923 0.00 0.00 0.00 2.43
217 218 8.401046 TGTGTTTGTGTATTAGCTTTGTTTTC 57.599 30.769 0.00 0.00 0.00 2.29
218 219 8.029522 TGTGTTTGTGTATTAGCTTTGTTTTCA 58.970 29.630 0.00 0.00 0.00 2.69
219 220 8.865001 GTGTTTGTGTATTAGCTTTGTTTTCAA 58.135 29.630 0.00 0.00 38.10 2.69
220 221 9.081997 TGTTTGTGTATTAGCTTTGTTTTCAAG 57.918 29.630 0.00 0.00 41.09 3.02
221 222 9.083080 GTTTGTGTATTAGCTTTGTTTTCAAGT 57.917 29.630 0.00 0.00 41.09 3.16
277 278 9.512588 AAAAATCAATATGGGCATTTACAACAA 57.487 25.926 0.00 0.00 0.00 2.83
278 279 9.683870 AAAATCAATATGGGCATTTACAACAAT 57.316 25.926 0.00 0.00 0.00 2.71
279 280 8.665643 AATCAATATGGGCATTTACAACAATG 57.334 30.769 0.00 0.00 37.23 2.82
280 281 6.580788 TCAATATGGGCATTTACAACAATGG 58.419 36.000 0.00 0.00 35.07 3.16
281 282 6.382282 TCAATATGGGCATTTACAACAATGGA 59.618 34.615 0.00 0.00 35.07 3.41
282 283 6.805016 ATATGGGCATTTACAACAATGGAA 57.195 33.333 0.00 0.00 35.07 3.53
283 284 5.697082 ATGGGCATTTACAACAATGGAAT 57.303 34.783 0.00 0.00 35.07 3.01
284 285 6.805016 ATGGGCATTTACAACAATGGAATA 57.195 33.333 0.00 0.00 35.07 1.75
285 286 6.805016 TGGGCATTTACAACAATGGAATAT 57.195 33.333 0.00 0.00 35.07 1.28
286 287 7.192852 TGGGCATTTACAACAATGGAATATT 57.807 32.000 0.00 0.00 35.07 1.28
287 288 7.628234 TGGGCATTTACAACAATGGAATATTT 58.372 30.769 0.00 0.00 35.07 1.40
288 289 7.551974 TGGGCATTTACAACAATGGAATATTTG 59.448 33.333 0.00 0.00 35.07 2.32
289 290 7.552330 GGGCATTTACAACAATGGAATATTTGT 59.448 33.333 0.00 0.00 37.66 2.83
290 291 8.945057 GGCATTTACAACAATGGAATATTTGTT 58.055 29.630 0.00 0.00 44.59 2.83
325 326 9.448438 ACACTAGTATTAAAAATGATGAGTGCA 57.552 29.630 0.00 0.00 35.17 4.57
330 331 8.752187 AGTATTAAAAATGATGAGTGCAATGGT 58.248 29.630 0.00 0.00 0.00 3.55
331 332 9.023967 GTATTAAAAATGATGAGTGCAATGGTC 57.976 33.333 0.00 0.00 0.00 4.02
332 333 5.733620 AAAAATGATGAGTGCAATGGTCT 57.266 34.783 0.00 0.00 0.00 3.85
333 334 5.733620 AAAATGATGAGTGCAATGGTCTT 57.266 34.783 0.00 0.00 0.00 3.01
334 335 4.713824 AATGATGAGTGCAATGGTCTTG 57.286 40.909 0.00 0.00 0.00 3.02
335 336 3.144657 TGATGAGTGCAATGGTCTTGT 57.855 42.857 0.00 0.00 0.00 3.16
336 337 4.284829 TGATGAGTGCAATGGTCTTGTA 57.715 40.909 0.00 0.00 0.00 2.41
337 338 4.256110 TGATGAGTGCAATGGTCTTGTAG 58.744 43.478 0.00 0.00 0.00 2.74
338 339 4.020307 TGATGAGTGCAATGGTCTTGTAGA 60.020 41.667 0.00 0.00 0.00 2.59
339 340 4.558226 TGAGTGCAATGGTCTTGTAGAT 57.442 40.909 0.00 0.00 0.00 1.98
340 341 4.256110 TGAGTGCAATGGTCTTGTAGATG 58.744 43.478 0.00 0.00 0.00 2.90
341 342 4.256920 GAGTGCAATGGTCTTGTAGATGT 58.743 43.478 0.00 0.00 0.00 3.06
342 343 4.655963 AGTGCAATGGTCTTGTAGATGTT 58.344 39.130 0.00 0.00 0.00 2.71
343 344 4.697352 AGTGCAATGGTCTTGTAGATGTTC 59.303 41.667 0.00 0.00 0.00 3.18
344 345 4.455533 GTGCAATGGTCTTGTAGATGTTCA 59.544 41.667 0.00 0.00 0.00 3.18
345 346 5.124457 GTGCAATGGTCTTGTAGATGTTCAT 59.876 40.000 0.00 0.00 0.00 2.57
346 347 5.124297 TGCAATGGTCTTGTAGATGTTCATG 59.876 40.000 0.00 0.00 0.00 3.07
347 348 5.355071 GCAATGGTCTTGTAGATGTTCATGA 59.645 40.000 0.00 0.00 0.00 3.07
348 349 6.127925 GCAATGGTCTTGTAGATGTTCATGAA 60.128 38.462 3.38 3.38 0.00 2.57
349 350 7.415989 GCAATGGTCTTGTAGATGTTCATGAAT 60.416 37.037 12.12 0.00 0.00 2.57
350 351 8.464404 CAATGGTCTTGTAGATGTTCATGAATT 58.536 33.333 12.12 2.31 0.00 2.17
351 352 7.381766 TGGTCTTGTAGATGTTCATGAATTG 57.618 36.000 12.12 0.00 0.00 2.32
352 353 6.942005 TGGTCTTGTAGATGTTCATGAATTGT 59.058 34.615 12.12 4.00 0.00 2.71
353 354 7.448161 TGGTCTTGTAGATGTTCATGAATTGTT 59.552 33.333 12.12 1.40 0.00 2.83
354 355 8.299570 GGTCTTGTAGATGTTCATGAATTGTTT 58.700 33.333 12.12 0.00 0.00 2.83
423 424 8.023128 TGCAGAGTAGATAAAATCAAAACTTGC 58.977 33.333 0.00 0.00 32.26 4.01
424 425 8.023128 GCAGAGTAGATAAAATCAAAACTTGCA 58.977 33.333 0.00 0.00 32.14 4.08
425 426 9.334693 CAGAGTAGATAAAATCAAAACTTGCAC 57.665 33.333 0.00 0.00 0.00 4.57
426 427 9.066892 AGAGTAGATAAAATCAAAACTTGCACA 57.933 29.630 0.00 0.00 0.00 4.57
427 428 9.846248 GAGTAGATAAAATCAAAACTTGCACAT 57.154 29.630 0.00 0.00 0.00 3.21
431 432 9.846248 AGATAAAATCAAAACTTGCACATACTC 57.154 29.630 0.00 0.00 0.00 2.59
432 433 6.991485 AAAATCAAAACTTGCACATACTCG 57.009 33.333 0.00 0.00 0.00 4.18
433 434 5.940192 AATCAAAACTTGCACATACTCGA 57.060 34.783 0.00 0.00 0.00 4.04
434 435 5.940192 ATCAAAACTTGCACATACTCGAA 57.060 34.783 0.00 0.00 0.00 3.71
435 436 5.940192 TCAAAACTTGCACATACTCGAAT 57.060 34.783 0.00 0.00 0.00 3.34
436 437 5.688823 TCAAAACTTGCACATACTCGAATG 58.311 37.500 0.00 0.00 0.00 2.67
437 438 3.747099 AACTTGCACATACTCGAATGC 57.253 42.857 0.00 0.00 38.59 3.56
438 439 2.977914 ACTTGCACATACTCGAATGCT 58.022 42.857 0.00 0.00 38.90 3.79
439 440 2.674852 ACTTGCACATACTCGAATGCTG 59.325 45.455 0.00 0.00 38.90 4.41
440 441 1.655484 TGCACATACTCGAATGCTGG 58.345 50.000 0.00 0.00 38.90 4.85
441 442 0.940126 GCACATACTCGAATGCTGGG 59.060 55.000 0.00 0.00 35.16 4.45
442 443 1.743772 GCACATACTCGAATGCTGGGT 60.744 52.381 0.00 0.00 35.16 4.51
443 444 2.205074 CACATACTCGAATGCTGGGTC 58.795 52.381 0.00 0.00 0.00 4.46
444 445 1.831106 ACATACTCGAATGCTGGGTCA 59.169 47.619 0.00 0.00 0.00 4.02
445 446 2.435805 ACATACTCGAATGCTGGGTCAT 59.564 45.455 0.00 0.00 0.00 3.06
446 447 2.602257 TACTCGAATGCTGGGTCATG 57.398 50.000 0.00 0.00 0.00 3.07
447 448 0.615331 ACTCGAATGCTGGGTCATGT 59.385 50.000 0.00 0.00 0.00 3.21
448 449 1.831106 ACTCGAATGCTGGGTCATGTA 59.169 47.619 0.00 0.00 0.00 2.29
449 450 2.205074 CTCGAATGCTGGGTCATGTAC 58.795 52.381 0.00 0.00 0.00 2.90
450 451 0.930310 CGAATGCTGGGTCATGTACG 59.070 55.000 0.00 0.00 0.00 3.67
451 452 0.657840 GAATGCTGGGTCATGTACGC 59.342 55.000 0.00 0.00 41.32 4.42
452 453 1.089481 AATGCTGGGTCATGTACGCG 61.089 55.000 3.53 3.53 43.79 6.01
453 454 1.955495 ATGCTGGGTCATGTACGCGA 61.955 55.000 15.93 0.00 43.79 5.87
454 455 1.878522 GCTGGGTCATGTACGCGAG 60.879 63.158 15.93 0.00 43.79 5.03
455 456 1.226974 CTGGGTCATGTACGCGAGG 60.227 63.158 15.93 0.00 43.79 4.63
456 457 1.663379 CTGGGTCATGTACGCGAGGA 61.663 60.000 15.93 0.00 43.79 3.71
457 458 1.040893 TGGGTCATGTACGCGAGGAT 61.041 55.000 15.93 0.00 43.79 3.24
458 459 0.956633 GGGTCATGTACGCGAGGATA 59.043 55.000 15.93 0.00 0.00 2.59
459 460 1.338973 GGGTCATGTACGCGAGGATAA 59.661 52.381 15.93 0.00 0.00 1.75
460 461 2.029290 GGGTCATGTACGCGAGGATAAT 60.029 50.000 15.93 0.00 0.00 1.28
461 462 3.192001 GGGTCATGTACGCGAGGATAATA 59.808 47.826 15.93 0.00 0.00 0.98
462 463 4.321452 GGGTCATGTACGCGAGGATAATAA 60.321 45.833 15.93 0.00 0.00 1.40
463 464 5.408356 GGTCATGTACGCGAGGATAATAAT 58.592 41.667 15.93 0.00 0.00 1.28
464 465 5.288712 GGTCATGTACGCGAGGATAATAATG 59.711 44.000 15.93 3.47 0.00 1.90
465 466 5.862323 GTCATGTACGCGAGGATAATAATGT 59.138 40.000 15.93 0.00 0.00 2.71
466 467 7.025365 GTCATGTACGCGAGGATAATAATGTA 58.975 38.462 15.93 0.00 0.00 2.29
467 468 7.218393 GTCATGTACGCGAGGATAATAATGTAG 59.782 40.741 15.93 0.00 0.00 2.74
468 469 6.806388 TGTACGCGAGGATAATAATGTAGA 57.194 37.500 15.93 0.00 0.00 2.59
469 470 6.839033 TGTACGCGAGGATAATAATGTAGAG 58.161 40.000 15.93 0.00 0.00 2.43
470 471 5.312120 ACGCGAGGATAATAATGTAGAGG 57.688 43.478 15.93 0.00 0.00 3.69
471 472 4.765856 ACGCGAGGATAATAATGTAGAGGT 59.234 41.667 15.93 0.00 0.00 3.85
472 473 5.096169 CGCGAGGATAATAATGTAGAGGTG 58.904 45.833 0.00 0.00 0.00 4.00
473 474 5.335740 CGCGAGGATAATAATGTAGAGGTGT 60.336 44.000 0.00 0.00 0.00 4.16
474 475 5.864474 GCGAGGATAATAATGTAGAGGTGTG 59.136 44.000 0.00 0.00 0.00 3.82
475 476 6.294564 GCGAGGATAATAATGTAGAGGTGTGA 60.295 42.308 0.00 0.00 0.00 3.58
476 477 7.085116 CGAGGATAATAATGTAGAGGTGTGAC 58.915 42.308 0.00 0.00 0.00 3.67
477 478 7.040340 CGAGGATAATAATGTAGAGGTGTGACT 60.040 40.741 0.00 0.00 0.00 3.41
478 479 9.298250 GAGGATAATAATGTAGAGGTGTGACTA 57.702 37.037 0.00 0.00 0.00 2.59
479 480 9.303116 AGGATAATAATGTAGAGGTGTGACTAG 57.697 37.037 0.00 0.00 0.00 2.57
480 481 8.030106 GGATAATAATGTAGAGGTGTGACTAGC 58.970 40.741 0.00 0.00 0.00 3.42
481 482 8.713708 ATAATAATGTAGAGGTGTGACTAGCT 57.286 34.615 0.00 0.00 0.00 3.32
482 483 4.993029 AATGTAGAGGTGTGACTAGCTC 57.007 45.455 0.00 6.25 43.65 4.09
487 488 3.708563 GAGGTGTGACTAGCTCTCATC 57.291 52.381 0.00 0.00 40.94 2.92
488 489 2.360801 GAGGTGTGACTAGCTCTCATCC 59.639 54.545 0.00 0.23 40.94 3.51
489 490 2.103373 GGTGTGACTAGCTCTCATCCA 58.897 52.381 0.00 0.00 0.00 3.41
490 491 2.100584 GGTGTGACTAGCTCTCATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
491 492 2.757868 GTGTGACTAGCTCTCATCCAGT 59.242 50.000 0.00 0.00 0.00 4.00
492 493 3.194542 GTGTGACTAGCTCTCATCCAGTT 59.805 47.826 0.00 0.00 0.00 3.16
493 494 3.194329 TGTGACTAGCTCTCATCCAGTTG 59.806 47.826 0.00 0.00 0.00 3.16
494 495 3.445450 GTGACTAGCTCTCATCCAGTTGA 59.555 47.826 0.00 0.00 0.00 3.18
495 496 3.698539 TGACTAGCTCTCATCCAGTTGAG 59.301 47.826 0.00 0.14 43.70 3.02
503 504 5.752036 TCTCATCCAGTTGAGAAATGACT 57.248 39.130 6.05 0.00 46.92 3.41
504 505 6.857437 TCTCATCCAGTTGAGAAATGACTA 57.143 37.500 6.05 0.00 46.92 2.59
505 506 6.871844 TCTCATCCAGTTGAGAAATGACTAG 58.128 40.000 6.05 0.00 46.92 2.57
506 507 6.438741 TCTCATCCAGTTGAGAAATGACTAGT 59.561 38.462 0.00 0.00 46.92 2.57
507 508 6.401394 TCATCCAGTTGAGAAATGACTAGTG 58.599 40.000 0.00 0.00 0.00 2.74
508 509 5.808366 TCCAGTTGAGAAATGACTAGTGT 57.192 39.130 0.00 0.00 0.00 3.55
509 510 5.784177 TCCAGTTGAGAAATGACTAGTGTC 58.216 41.667 0.00 0.00 43.20 3.67
522 523 5.251601 GACTAGTGTCATCCAACTCCTAC 57.748 47.826 0.00 0.00 42.48 3.18
523 524 4.936802 ACTAGTGTCATCCAACTCCTACT 58.063 43.478 0.00 0.00 0.00 2.57
524 525 6.075949 ACTAGTGTCATCCAACTCCTACTA 57.924 41.667 0.00 0.00 0.00 1.82
525 526 5.887035 ACTAGTGTCATCCAACTCCTACTAC 59.113 44.000 0.00 0.00 0.00 2.73
526 527 4.673968 AGTGTCATCCAACTCCTACTACA 58.326 43.478 0.00 0.00 0.00 2.74
527 528 4.463186 AGTGTCATCCAACTCCTACTACAC 59.537 45.833 0.00 0.00 35.97 2.90
528 529 3.767673 TGTCATCCAACTCCTACTACACC 59.232 47.826 0.00 0.00 0.00 4.16
529 530 3.021695 TCATCCAACTCCTACTACACCG 58.978 50.000 0.00 0.00 0.00 4.94
530 531 2.885135 TCCAACTCCTACTACACCGA 57.115 50.000 0.00 0.00 0.00 4.69
531 532 3.377253 TCCAACTCCTACTACACCGAT 57.623 47.619 0.00 0.00 0.00 4.18
532 533 3.021695 TCCAACTCCTACTACACCGATG 58.978 50.000 0.00 0.00 0.00 3.84
533 534 2.100916 CCAACTCCTACTACACCGATGG 59.899 54.545 0.00 0.00 0.00 3.51
534 535 3.021695 CAACTCCTACTACACCGATGGA 58.978 50.000 0.00 0.00 0.00 3.41
535 536 3.596940 ACTCCTACTACACCGATGGAT 57.403 47.619 0.00 0.00 0.00 3.41
536 537 3.912248 ACTCCTACTACACCGATGGATT 58.088 45.455 0.00 0.00 0.00 3.01
537 538 4.287552 ACTCCTACTACACCGATGGATTT 58.712 43.478 0.00 0.00 0.00 2.17
538 539 4.715297 ACTCCTACTACACCGATGGATTTT 59.285 41.667 0.00 0.00 0.00 1.82
539 540 5.895534 ACTCCTACTACACCGATGGATTTTA 59.104 40.000 0.00 0.00 0.00 1.52
540 541 6.152932 TCCTACTACACCGATGGATTTTAC 57.847 41.667 0.00 0.00 0.00 2.01
541 542 4.980434 CCTACTACACCGATGGATTTTACG 59.020 45.833 0.00 0.00 0.00 3.18
542 543 3.192466 ACTACACCGATGGATTTTACGC 58.808 45.455 0.00 0.00 0.00 4.42
543 544 1.003851 ACACCGATGGATTTTACGCG 58.996 50.000 3.53 3.53 0.00 6.01
544 545 0.303493 CACCGATGGATTTTACGCGG 59.697 55.000 12.47 0.00 43.95 6.46
545 546 0.176219 ACCGATGGATTTTACGCGGA 59.824 50.000 12.47 0.00 41.11 5.54
546 547 1.202604 ACCGATGGATTTTACGCGGAT 60.203 47.619 12.47 0.00 41.11 4.18
547 548 2.036217 ACCGATGGATTTTACGCGGATA 59.964 45.455 12.47 0.00 41.11 2.59
548 549 3.259064 CCGATGGATTTTACGCGGATAT 58.741 45.455 12.47 0.00 41.11 1.63
549 550 3.682858 CCGATGGATTTTACGCGGATATT 59.317 43.478 12.47 0.00 41.11 1.28
550 551 4.201685 CCGATGGATTTTACGCGGATATTC 60.202 45.833 12.47 2.78 41.11 1.75
551 552 4.490319 CGATGGATTTTACGCGGATATTCG 60.490 45.833 12.47 0.00 0.00 3.34
564 565 5.924475 CGGATATTCGCAGGAACTATTTT 57.076 39.130 0.00 0.00 36.02 1.82
565 566 5.679906 CGGATATTCGCAGGAACTATTTTG 58.320 41.667 0.00 0.00 36.02 2.44
566 567 5.452777 GGATATTCGCAGGAACTATTTTGC 58.547 41.667 0.00 0.00 36.02 3.68
567 568 5.239525 GGATATTCGCAGGAACTATTTTGCT 59.760 40.000 0.00 0.00 36.02 3.91
568 569 6.238759 GGATATTCGCAGGAACTATTTTGCTT 60.239 38.462 0.00 0.00 36.02 3.91
569 570 7.041372 GGATATTCGCAGGAACTATTTTGCTTA 60.041 37.037 0.00 0.00 36.02 3.09
570 571 5.950758 TTCGCAGGAACTATTTTGCTTAA 57.049 34.783 0.00 0.00 36.02 1.85
571 572 6.509418 TTCGCAGGAACTATTTTGCTTAAT 57.491 33.333 0.00 0.00 36.02 1.40
572 573 6.119144 TCGCAGGAACTATTTTGCTTAATC 57.881 37.500 0.00 0.00 36.02 1.75
573 574 5.645929 TCGCAGGAACTATTTTGCTTAATCA 59.354 36.000 0.00 0.00 36.02 2.57
574 575 6.150307 TCGCAGGAACTATTTTGCTTAATCAA 59.850 34.615 0.00 0.00 36.02 2.57
575 576 6.806249 CGCAGGAACTATTTTGCTTAATCAAA 59.194 34.615 0.40 0.40 36.02 2.69
576 577 7.489113 CGCAGGAACTATTTTGCTTAATCAAAT 59.511 33.333 5.38 0.00 36.02 2.32
577 578 9.801873 GCAGGAACTATTTTGCTTAATCAAATA 57.198 29.630 5.38 0.95 36.02 1.40
587 588 9.733556 TTTTGCTTAATCAAATACTAGTCCAGA 57.266 29.630 0.00 0.00 36.04 3.86
588 589 9.905713 TTTGCTTAATCAAATACTAGTCCAGAT 57.094 29.630 0.00 0.00 31.64 2.90
589 590 8.893219 TGCTTAATCAAATACTAGTCCAGATG 57.107 34.615 0.00 0.00 0.00 2.90
590 591 8.704668 TGCTTAATCAAATACTAGTCCAGATGA 58.295 33.333 0.00 0.00 0.00 2.92
591 592 9.202273 GCTTAATCAAATACTAGTCCAGATGAG 57.798 37.037 0.00 3.47 0.00 2.90
602 603 8.140112 ACTAGTCCAGATGAGAATTAACAAGT 57.860 34.615 0.00 0.00 0.00 3.16
603 604 8.254508 ACTAGTCCAGATGAGAATTAACAAGTC 58.745 37.037 0.00 0.00 0.00 3.01
604 605 6.410540 AGTCCAGATGAGAATTAACAAGTCC 58.589 40.000 0.00 0.00 0.00 3.85
605 606 5.292101 GTCCAGATGAGAATTAACAAGTCCG 59.708 44.000 0.00 0.00 0.00 4.79
606 607 5.186992 TCCAGATGAGAATTAACAAGTCCGA 59.813 40.000 0.00 0.00 0.00 4.55
607 608 6.051717 CCAGATGAGAATTAACAAGTCCGAT 58.948 40.000 0.00 0.00 0.00 4.18
608 609 7.069455 TCCAGATGAGAATTAACAAGTCCGATA 59.931 37.037 0.00 0.00 0.00 2.92
609 610 7.710907 CCAGATGAGAATTAACAAGTCCGATAA 59.289 37.037 0.00 0.00 0.00 1.75
610 611 9.265901 CAGATGAGAATTAACAAGTCCGATAAT 57.734 33.333 0.00 0.00 0.00 1.28
611 612 9.838339 AGATGAGAATTAACAAGTCCGATAATT 57.162 29.630 0.00 0.00 32.27 1.40
621 622 8.649973 AACAAGTCCGATAATTTATCTCTGAC 57.350 34.615 13.19 14.58 33.01 3.51
622 623 8.012957 ACAAGTCCGATAATTTATCTCTGACT 57.987 34.615 18.00 18.00 37.58 3.41
623 624 8.478877 ACAAGTCCGATAATTTATCTCTGACTT 58.521 33.333 23.24 23.24 41.47 3.01
624 625 9.967346 CAAGTCCGATAATTTATCTCTGACTTA 57.033 33.333 25.51 4.25 40.32 2.24
627 628 9.915629 GTCCGATAATTTATCTCTGACTTATGT 57.084 33.333 13.19 0.00 33.01 2.29
628 629 9.914131 TCCGATAATTTATCTCTGACTTATGTG 57.086 33.333 13.19 0.00 33.01 3.21
629 630 9.144747 CCGATAATTTATCTCTGACTTATGTGG 57.855 37.037 13.19 0.94 33.01 4.17
630 631 9.698309 CGATAATTTATCTCTGACTTATGTGGT 57.302 33.333 13.19 0.00 33.01 4.16
633 634 6.867519 TTTATCTCTGACTTATGTGGTCCA 57.132 37.500 0.00 0.00 33.22 4.02
634 635 6.867519 TTATCTCTGACTTATGTGGTCCAA 57.132 37.500 0.00 0.00 33.22 3.53
635 636 5.965033 ATCTCTGACTTATGTGGTCCAAT 57.035 39.130 0.00 0.00 33.22 3.16
636 637 5.762179 TCTCTGACTTATGTGGTCCAATT 57.238 39.130 0.00 0.00 33.22 2.32
637 638 6.867519 TCTCTGACTTATGTGGTCCAATTA 57.132 37.500 0.00 0.00 33.22 1.40
638 639 7.437713 TCTCTGACTTATGTGGTCCAATTAT 57.562 36.000 0.00 0.00 33.22 1.28
639 640 7.275183 TCTCTGACTTATGTGGTCCAATTATG 58.725 38.462 0.00 0.00 33.22 1.90
640 641 5.822519 TCTGACTTATGTGGTCCAATTATGC 59.177 40.000 0.00 0.00 33.22 3.14
641 642 5.504853 TGACTTATGTGGTCCAATTATGCA 58.495 37.500 0.00 0.00 33.22 3.96
642 643 6.128486 TGACTTATGTGGTCCAATTATGCAT 58.872 36.000 3.79 3.79 33.22 3.96
643 644 7.286313 TGACTTATGTGGTCCAATTATGCATA 58.714 34.615 1.16 1.16 33.22 3.14
644 645 7.228507 TGACTTATGTGGTCCAATTATGCATAC 59.771 37.037 5.74 0.00 33.22 2.39
645 646 6.490040 ACTTATGTGGTCCAATTATGCATACC 59.510 38.462 5.74 6.51 0.00 2.73
646 647 4.518278 TGTGGTCCAATTATGCATACCT 57.482 40.909 5.74 0.00 0.00 3.08
647 648 4.460263 TGTGGTCCAATTATGCATACCTC 58.540 43.478 5.74 7.48 0.00 3.85
648 649 4.165950 TGTGGTCCAATTATGCATACCTCT 59.834 41.667 5.74 0.00 0.00 3.69
649 650 4.516698 GTGGTCCAATTATGCATACCTCTG 59.483 45.833 5.74 1.59 0.00 3.35
650 651 4.411869 TGGTCCAATTATGCATACCTCTGA 59.588 41.667 5.74 0.00 0.00 3.27
651 652 5.104151 TGGTCCAATTATGCATACCTCTGAA 60.104 40.000 5.74 0.00 0.00 3.02
652 653 5.239525 GGTCCAATTATGCATACCTCTGAAC 59.760 44.000 5.74 0.00 0.00 3.18
653 654 5.822519 GTCCAATTATGCATACCTCTGAACA 59.177 40.000 5.74 0.00 0.00 3.18
654 655 6.488006 GTCCAATTATGCATACCTCTGAACAT 59.512 38.462 5.74 0.00 0.00 2.71
655 656 7.661437 GTCCAATTATGCATACCTCTGAACATA 59.339 37.037 5.74 0.00 0.00 2.29
656 657 8.217111 TCCAATTATGCATACCTCTGAACATAA 58.783 33.333 5.74 0.00 35.25 1.90
657 658 8.849168 CCAATTATGCATACCTCTGAACATAAA 58.151 33.333 5.74 0.00 34.66 1.40
664 665 9.625747 TGCATACCTCTGAACATAAATAAATGA 57.374 29.630 0.00 0.00 0.00 2.57
726 737 0.821711 GTTTACCCACACCAGCAGCA 60.822 55.000 0.00 0.00 0.00 4.41
809 820 1.270893 GGAGACAGACAGACAAACCCC 60.271 57.143 0.00 0.00 0.00 4.95
872 884 4.195334 CAGCCCCCGGATTCCCTG 62.195 72.222 0.73 0.00 0.00 4.45
947 967 0.909623 ACGAACCATTCCGGATTCCT 59.090 50.000 4.15 0.00 38.63 3.36
954 974 1.048724 ATTCCGGATTCCTCTCGCCA 61.049 55.000 4.15 0.00 0.00 5.69
987 1007 1.683418 CCGGTAGTCCAACCCTAGCC 61.683 65.000 0.00 0.00 36.03 3.93
991 1011 4.484872 GTCCAACCCTAGCCCGCC 62.485 72.222 0.00 0.00 0.00 6.13
1221 1250 2.422231 CCTCCTCCTCGACCTGCTG 61.422 68.421 0.00 0.00 0.00 4.41
1920 1949 2.355837 GTGCTCTTCGTCACCGCA 60.356 61.111 0.00 0.00 0.00 5.69
2306 2335 1.478510 GGAGATCCTCGACTGCTTGAA 59.521 52.381 0.00 0.00 0.00 2.69
2452 2490 4.502259 CGAGGTAGCTTTCCTCTGCATAAT 60.502 45.833 25.00 0.03 46.49 1.28
2718 2764 1.599797 GTACAGGGCTTGTTGGCGT 60.600 57.895 7.82 0.00 41.29 5.68
2731 2777 2.063266 GTTGGCGTGATAGTTTCGACA 58.937 47.619 0.00 0.00 40.90 4.35
2883 2936 2.536365 CTAGCATGCATTTGCCACTTG 58.464 47.619 21.98 0.00 43.83 3.16
2885 2938 1.022451 GCATGCATTTGCCACTTGGG 61.022 55.000 14.21 0.00 41.18 4.12
2898 2951 3.355378 CCACTTGGGCACAGATTATCAA 58.645 45.455 0.00 0.00 0.00 2.57
2909 2962 5.048224 GCACAGATTATCAATGGAGAATGGG 60.048 44.000 0.00 0.00 35.21 4.00
2937 2990 2.445565 TGCTCTGTTGTCTGCAGTAG 57.554 50.000 14.67 6.05 35.60 2.57
2960 3013 4.499696 GCGGGTGAAATTTTGGATATCTGG 60.500 45.833 2.05 0.00 0.00 3.86
3054 3120 8.579863 CCTCTTGTTTTATTCTTCAAATCTGGT 58.420 33.333 0.00 0.00 0.00 4.00
3068 3134 4.806640 AATCTGGTTTGGCTTGGTAATG 57.193 40.909 0.00 0.00 0.00 1.90
3069 3135 1.892474 TCTGGTTTGGCTTGGTAATGC 59.108 47.619 0.00 0.00 0.00 3.56
3070 3136 1.895131 CTGGTTTGGCTTGGTAATGCT 59.105 47.619 0.00 0.00 0.00 3.79
3116 3182 1.066929 GGATGGTGTTGGTGATTTGGC 60.067 52.381 0.00 0.00 0.00 4.52
3125 3196 1.423541 TGGTGATTTGGCCTGTACAGT 59.576 47.619 21.18 1.39 0.00 3.55
3187 3260 5.778241 TGTGATCCAGGTTCAGTTTAGAGTA 59.222 40.000 0.00 0.00 0.00 2.59
3209 3282 1.457346 GTGCATGCTAAGGTGCTCTT 58.543 50.000 20.33 0.00 41.78 2.85
3293 3424 6.701145 TTTGTAGTTGGCATTGTTCTGTTA 57.299 33.333 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.834168 TTAAATTTTAGCTTGCACTAGGCT 57.166 33.333 0.00 0.00 44.77 4.58
1 2 6.866248 TGTTTAAATTTTAGCTTGCACTAGGC 59.134 34.615 0.00 0.00 45.13 3.93
2 3 7.542130 CCTGTTTAAATTTTAGCTTGCACTAGG 59.458 37.037 0.00 0.00 0.00 3.02
3 4 7.542130 CCCTGTTTAAATTTTAGCTTGCACTAG 59.458 37.037 0.00 0.00 0.00 2.57
4 5 7.014808 ACCCTGTTTAAATTTTAGCTTGCACTA 59.985 33.333 0.00 0.00 0.00 2.74
7 8 6.168270 ACCCTGTTTAAATTTTAGCTTGCA 57.832 33.333 0.00 0.00 0.00 4.08
8 9 8.596271 TTAACCCTGTTTAAATTTTAGCTTGC 57.404 30.769 0.00 0.00 0.00 4.01
47 48 9.549509 CGGATTTTGAGTTTCGAAATACAATAA 57.450 29.630 23.04 19.93 39.86 1.40
48 49 8.937884 TCGGATTTTGAGTTTCGAAATACAATA 58.062 29.630 23.04 20.13 39.86 1.90
49 50 7.812648 TCGGATTTTGAGTTTCGAAATACAAT 58.187 30.769 23.04 14.33 39.86 2.71
50 51 7.192148 TCGGATTTTGAGTTTCGAAATACAA 57.808 32.000 14.69 18.40 39.86 2.41
51 52 6.788684 TCGGATTTTGAGTTTCGAAATACA 57.211 33.333 14.69 13.83 39.86 2.29
52 53 8.013378 TCTTTCGGATTTTGAGTTTCGAAATAC 58.987 33.333 14.69 11.46 39.80 1.89
53 54 8.090250 TCTTTCGGATTTTGAGTTTCGAAATA 57.910 30.769 14.69 1.13 39.80 1.40
54 55 6.966021 TCTTTCGGATTTTGAGTTTCGAAAT 58.034 32.000 14.69 3.23 41.77 2.17
55 56 6.366315 TCTTTCGGATTTTGAGTTTCGAAA 57.634 33.333 6.47 6.47 41.94 3.46
56 57 5.994887 TCTTTCGGATTTTGAGTTTCGAA 57.005 34.783 0.00 0.00 35.32 3.71
57 58 5.526111 ACTTCTTTCGGATTTTGAGTTTCGA 59.474 36.000 0.00 0.00 0.00 3.71
58 59 5.748592 ACTTCTTTCGGATTTTGAGTTTCG 58.251 37.500 0.00 0.00 0.00 3.46
59 60 7.377131 CAGAACTTCTTTCGGATTTTGAGTTTC 59.623 37.037 0.00 0.00 39.47 2.78
60 61 7.067008 TCAGAACTTCTTTCGGATTTTGAGTTT 59.933 33.333 0.00 0.00 39.47 2.66
61 62 6.542370 TCAGAACTTCTTTCGGATTTTGAGTT 59.458 34.615 0.00 0.00 39.47 3.01
62 63 6.055588 TCAGAACTTCTTTCGGATTTTGAGT 58.944 36.000 0.00 0.00 39.47 3.41
63 64 6.545504 TCAGAACTTCTTTCGGATTTTGAG 57.454 37.500 0.00 0.00 39.47 3.02
70 71 6.693315 ACAAAAATCAGAACTTCTTTCGGA 57.307 33.333 0.00 0.00 41.87 4.55
71 72 7.755582 AAACAAAAATCAGAACTTCTTTCGG 57.244 32.000 0.00 0.00 39.47 4.30
95 96 5.636965 CGGATGTCACCAAAATATGCAAAAA 59.363 36.000 0.00 0.00 0.00 1.94
96 97 5.167121 CGGATGTCACCAAAATATGCAAAA 58.833 37.500 0.00 0.00 0.00 2.44
97 98 4.381398 CCGGATGTCACCAAAATATGCAAA 60.381 41.667 0.00 0.00 0.00 3.68
98 99 3.130164 CCGGATGTCACCAAAATATGCAA 59.870 43.478 0.00 0.00 0.00 4.08
99 100 2.687425 CCGGATGTCACCAAAATATGCA 59.313 45.455 0.00 0.00 0.00 3.96
100 101 2.948979 TCCGGATGTCACCAAAATATGC 59.051 45.455 0.00 0.00 0.00 3.14
101 102 5.574891 TTTCCGGATGTCACCAAAATATG 57.425 39.130 4.15 0.00 0.00 1.78
102 103 6.790232 AATTTCCGGATGTCACCAAAATAT 57.210 33.333 4.15 0.00 30.26 1.28
103 104 6.435904 AGAAATTTCCGGATGTCACCAAAATA 59.564 34.615 14.61 0.00 30.26 1.40
104 105 5.245977 AGAAATTTCCGGATGTCACCAAAAT 59.754 36.000 14.61 0.00 31.07 1.82
105 106 4.586841 AGAAATTTCCGGATGTCACCAAAA 59.413 37.500 14.61 0.00 0.00 2.44
106 107 4.148838 AGAAATTTCCGGATGTCACCAAA 58.851 39.130 14.61 0.00 0.00 3.28
107 108 3.756434 GAGAAATTTCCGGATGTCACCAA 59.244 43.478 14.61 0.00 0.00 3.67
108 109 3.343617 GAGAAATTTCCGGATGTCACCA 58.656 45.455 14.61 0.00 0.00 4.17
109 110 2.683362 GGAGAAATTTCCGGATGTCACC 59.317 50.000 14.61 0.00 0.00 4.02
110 111 3.610911 AGGAGAAATTTCCGGATGTCAC 58.389 45.455 14.61 0.00 42.29 3.67
111 112 4.301072 AAGGAGAAATTTCCGGATGTCA 57.699 40.909 14.61 0.00 42.29 3.58
112 113 5.393135 GGAAAAGGAGAAATTTCCGGATGTC 60.393 44.000 14.61 0.00 43.57 3.06
113 114 4.462834 GGAAAAGGAGAAATTTCCGGATGT 59.537 41.667 14.61 0.00 43.57 3.06
114 115 4.998788 GGAAAAGGAGAAATTTCCGGATG 58.001 43.478 14.61 0.00 43.57 3.51
119 120 9.483916 TTTAATTTCGGAAAAGGAGAAATTTCC 57.516 29.630 14.61 0.97 46.27 3.13
123 124 9.268268 GGTTTTTAATTTCGGAAAAGGAGAAAT 57.732 29.630 7.33 0.00 43.80 2.17
124 125 8.479689 AGGTTTTTAATTTCGGAAAAGGAGAAA 58.520 29.630 7.33 3.45 38.11 2.52
125 126 8.014070 AGGTTTTTAATTTCGGAAAAGGAGAA 57.986 30.769 7.33 0.00 0.00 2.87
126 127 7.591421 AGGTTTTTAATTTCGGAAAAGGAGA 57.409 32.000 7.33 0.00 0.00 3.71
127 128 9.188588 GTAAGGTTTTTAATTTCGGAAAAGGAG 57.811 33.333 7.33 0.00 0.00 3.69
128 129 7.861872 CGTAAGGTTTTTAATTTCGGAAAAGGA 59.138 33.333 7.33 0.00 0.00 3.36
129 130 7.999213 CGTAAGGTTTTTAATTTCGGAAAAGG 58.001 34.615 7.33 0.00 0.00 3.11
149 150 4.212214 GGAGCAAATCTAAGCATCCGTAAG 59.788 45.833 0.00 0.00 0.00 2.34
150 151 4.127171 GGAGCAAATCTAAGCATCCGTAA 58.873 43.478 0.00 0.00 0.00 3.18
151 152 3.388024 AGGAGCAAATCTAAGCATCCGTA 59.612 43.478 0.00 0.00 35.00 4.02
152 153 2.171448 AGGAGCAAATCTAAGCATCCGT 59.829 45.455 0.00 0.00 35.00 4.69
153 154 2.843701 AGGAGCAAATCTAAGCATCCG 58.156 47.619 0.00 0.00 35.00 4.18
154 155 5.126061 TGAAAAGGAGCAAATCTAAGCATCC 59.874 40.000 0.00 0.00 0.00 3.51
155 156 6.199937 TGAAAAGGAGCAAATCTAAGCATC 57.800 37.500 0.00 0.00 0.00 3.91
156 157 6.606395 AGATGAAAAGGAGCAAATCTAAGCAT 59.394 34.615 0.00 0.00 0.00 3.79
157 158 5.948162 AGATGAAAAGGAGCAAATCTAAGCA 59.052 36.000 0.00 0.00 0.00 3.91
158 159 6.318396 AGAGATGAAAAGGAGCAAATCTAAGC 59.682 38.462 0.00 0.00 0.00 3.09
159 160 7.862512 AGAGATGAAAAGGAGCAAATCTAAG 57.137 36.000 0.00 0.00 0.00 2.18
160 161 8.543774 AGTAGAGATGAAAAGGAGCAAATCTAA 58.456 33.333 0.00 0.00 0.00 2.10
161 162 8.083828 AGTAGAGATGAAAAGGAGCAAATCTA 57.916 34.615 0.00 0.00 0.00 1.98
162 163 6.956497 AGTAGAGATGAAAAGGAGCAAATCT 58.044 36.000 0.00 0.00 0.00 2.40
163 164 7.622893 AAGTAGAGATGAAAAGGAGCAAATC 57.377 36.000 0.00 0.00 0.00 2.17
164 165 8.325046 AGTAAGTAGAGATGAAAAGGAGCAAAT 58.675 33.333 0.00 0.00 0.00 2.32
165 166 7.680730 AGTAAGTAGAGATGAAAAGGAGCAAA 58.319 34.615 0.00 0.00 0.00 3.68
166 167 7.246171 AGTAAGTAGAGATGAAAAGGAGCAA 57.754 36.000 0.00 0.00 0.00 3.91
167 168 6.859112 AGTAAGTAGAGATGAAAAGGAGCA 57.141 37.500 0.00 0.00 0.00 4.26
168 169 7.604545 ACAAAGTAAGTAGAGATGAAAAGGAGC 59.395 37.037 0.00 0.00 0.00 4.70
169 170 8.930760 CACAAAGTAAGTAGAGATGAAAAGGAG 58.069 37.037 0.00 0.00 0.00 3.69
170 171 8.429641 ACACAAAGTAAGTAGAGATGAAAAGGA 58.570 33.333 0.00 0.00 0.00 3.36
171 172 8.608844 ACACAAAGTAAGTAGAGATGAAAAGG 57.391 34.615 0.00 0.00 0.00 3.11
174 175 9.391006 ACAAACACAAAGTAAGTAGAGATGAAA 57.609 29.630 0.00 0.00 0.00 2.69
175 176 8.826710 CACAAACACAAAGTAAGTAGAGATGAA 58.173 33.333 0.00 0.00 0.00 2.57
176 177 7.985184 ACACAAACACAAAGTAAGTAGAGATGA 59.015 33.333 0.00 0.00 0.00 2.92
177 178 8.142994 ACACAAACACAAAGTAAGTAGAGATG 57.857 34.615 0.00 0.00 0.00 2.90
178 179 9.998106 ATACACAAACACAAAGTAAGTAGAGAT 57.002 29.630 0.00 0.00 0.00 2.75
179 180 9.826574 AATACACAAACACAAAGTAAGTAGAGA 57.173 29.630 0.00 0.00 0.00 3.10
182 183 9.807386 GCTAATACACAAACACAAAGTAAGTAG 57.193 33.333 0.00 0.00 0.00 2.57
183 184 9.550406 AGCTAATACACAAACACAAAGTAAGTA 57.450 29.630 0.00 0.00 0.00 2.24
184 185 8.446599 AGCTAATACACAAACACAAAGTAAGT 57.553 30.769 0.00 0.00 0.00 2.24
185 186 9.730420 AAAGCTAATACACAAACACAAAGTAAG 57.270 29.630 0.00 0.00 0.00 2.34
186 187 9.509855 CAAAGCTAATACACAAACACAAAGTAA 57.490 29.630 0.00 0.00 0.00 2.24
187 188 8.679100 ACAAAGCTAATACACAAACACAAAGTA 58.321 29.630 0.00 0.00 0.00 2.24
188 189 7.543756 ACAAAGCTAATACACAAACACAAAGT 58.456 30.769 0.00 0.00 0.00 2.66
189 190 7.985634 ACAAAGCTAATACACAAACACAAAG 57.014 32.000 0.00 0.00 0.00 2.77
190 191 8.764524 AAACAAAGCTAATACACAAACACAAA 57.235 26.923 0.00 0.00 0.00 2.83
191 192 8.764524 AAAACAAAGCTAATACACAAACACAA 57.235 26.923 0.00 0.00 0.00 3.33
192 193 8.029522 TGAAAACAAAGCTAATACACAAACACA 58.970 29.630 0.00 0.00 0.00 3.72
193 194 8.401046 TGAAAACAAAGCTAATACACAAACAC 57.599 30.769 0.00 0.00 0.00 3.32
194 195 8.988064 TTGAAAACAAAGCTAATACACAAACA 57.012 26.923 0.00 0.00 0.00 2.83
195 196 9.083080 ACTTGAAAACAAAGCTAATACACAAAC 57.917 29.630 0.00 0.00 0.00 2.93
251 252 9.512588 TTGTTGTAAATGCCCATATTGATTTTT 57.487 25.926 0.00 0.00 0.00 1.94
252 253 9.683870 ATTGTTGTAAATGCCCATATTGATTTT 57.316 25.926 0.00 0.00 0.00 1.82
253 254 9.111613 CATTGTTGTAAATGCCCATATTGATTT 57.888 29.630 0.00 0.00 31.19 2.17
254 255 7.716123 CCATTGTTGTAAATGCCCATATTGATT 59.284 33.333 0.00 0.00 36.42 2.57
255 256 7.070946 TCCATTGTTGTAAATGCCCATATTGAT 59.929 33.333 0.00 0.00 36.42 2.57
256 257 6.382282 TCCATTGTTGTAAATGCCCATATTGA 59.618 34.615 0.00 0.00 36.42 2.57
257 258 6.580788 TCCATTGTTGTAAATGCCCATATTG 58.419 36.000 0.00 0.00 36.42 1.90
258 259 6.805016 TCCATTGTTGTAAATGCCCATATT 57.195 33.333 0.00 0.00 36.42 1.28
259 260 6.805016 TTCCATTGTTGTAAATGCCCATAT 57.195 33.333 0.00 0.00 36.42 1.78
260 261 6.805016 ATTCCATTGTTGTAAATGCCCATA 57.195 33.333 0.00 0.00 36.42 2.74
261 262 5.697082 ATTCCATTGTTGTAAATGCCCAT 57.303 34.783 0.00 0.00 36.42 4.00
262 263 6.805016 ATATTCCATTGTTGTAAATGCCCA 57.195 33.333 0.00 0.00 36.42 5.36
263 264 7.552330 ACAAATATTCCATTGTTGTAAATGCCC 59.448 33.333 0.00 0.00 36.39 5.36
264 265 8.491331 ACAAATATTCCATTGTTGTAAATGCC 57.509 30.769 0.00 0.00 36.39 4.40
299 300 9.448438 TGCACTCATCATTTTTAATACTAGTGT 57.552 29.630 5.39 0.00 34.54 3.55
304 305 8.752187 ACCATTGCACTCATCATTTTTAATACT 58.248 29.630 0.00 0.00 0.00 2.12
305 306 8.931385 ACCATTGCACTCATCATTTTTAATAC 57.069 30.769 0.00 0.00 0.00 1.89
306 307 8.970020 AGACCATTGCACTCATCATTTTTAATA 58.030 29.630 0.00 0.00 0.00 0.98
307 308 7.844009 AGACCATTGCACTCATCATTTTTAAT 58.156 30.769 0.00 0.00 0.00 1.40
308 309 7.230849 AGACCATTGCACTCATCATTTTTAA 57.769 32.000 0.00 0.00 0.00 1.52
309 310 6.839124 AGACCATTGCACTCATCATTTTTA 57.161 33.333 0.00 0.00 0.00 1.52
310 311 5.733620 AGACCATTGCACTCATCATTTTT 57.266 34.783 0.00 0.00 0.00 1.94
311 312 5.011329 ACAAGACCATTGCACTCATCATTTT 59.989 36.000 0.00 0.00 0.00 1.82
312 313 4.525487 ACAAGACCATTGCACTCATCATTT 59.475 37.500 0.00 0.00 0.00 2.32
313 314 4.084287 ACAAGACCATTGCACTCATCATT 58.916 39.130 0.00 0.00 0.00 2.57
314 315 3.693807 ACAAGACCATTGCACTCATCAT 58.306 40.909 0.00 0.00 0.00 2.45
315 316 3.144657 ACAAGACCATTGCACTCATCA 57.855 42.857 0.00 0.00 0.00 3.07
316 317 4.507710 TCTACAAGACCATTGCACTCATC 58.492 43.478 0.00 0.00 0.00 2.92
317 318 4.558226 TCTACAAGACCATTGCACTCAT 57.442 40.909 0.00 0.00 0.00 2.90
318 319 4.256110 CATCTACAAGACCATTGCACTCA 58.744 43.478 0.00 0.00 0.00 3.41
319 320 4.256920 ACATCTACAAGACCATTGCACTC 58.743 43.478 0.00 0.00 0.00 3.51
320 321 4.292186 ACATCTACAAGACCATTGCACT 57.708 40.909 0.00 0.00 0.00 4.40
321 322 4.455533 TGAACATCTACAAGACCATTGCAC 59.544 41.667 0.00 0.00 0.00 4.57
322 323 4.650734 TGAACATCTACAAGACCATTGCA 58.349 39.130 0.00 0.00 0.00 4.08
323 324 5.355071 TCATGAACATCTACAAGACCATTGC 59.645 40.000 0.00 0.00 0.00 3.56
324 325 6.990341 TCATGAACATCTACAAGACCATTG 57.010 37.500 0.00 0.00 0.00 2.82
325 326 8.464404 CAATTCATGAACATCTACAAGACCATT 58.536 33.333 11.07 0.00 0.00 3.16
326 327 7.613022 ACAATTCATGAACATCTACAAGACCAT 59.387 33.333 11.07 0.00 0.00 3.55
327 328 6.942005 ACAATTCATGAACATCTACAAGACCA 59.058 34.615 11.07 0.00 0.00 4.02
328 329 7.383102 ACAATTCATGAACATCTACAAGACC 57.617 36.000 11.07 0.00 0.00 3.85
397 398 8.023128 GCAAGTTTTGATTTTATCTACTCTGCA 58.977 33.333 0.00 0.00 31.33 4.41
398 399 8.023128 TGCAAGTTTTGATTTTATCTACTCTGC 58.977 33.333 0.00 0.00 0.00 4.26
399 400 9.334693 GTGCAAGTTTTGATTTTATCTACTCTG 57.665 33.333 0.00 0.00 0.00 3.35
400 401 9.066892 TGTGCAAGTTTTGATTTTATCTACTCT 57.933 29.630 0.00 0.00 0.00 3.24
401 402 9.846248 ATGTGCAAGTTTTGATTTTATCTACTC 57.154 29.630 0.00 0.00 0.00 2.59
405 406 9.846248 GAGTATGTGCAAGTTTTGATTTTATCT 57.154 29.630 0.00 0.00 0.00 1.98
406 407 8.788813 CGAGTATGTGCAAGTTTTGATTTTATC 58.211 33.333 0.00 0.00 0.00 1.75
407 408 8.511321 TCGAGTATGTGCAAGTTTTGATTTTAT 58.489 29.630 0.00 0.00 0.00 1.40
408 409 7.866729 TCGAGTATGTGCAAGTTTTGATTTTA 58.133 30.769 0.00 0.00 0.00 1.52
409 410 6.734137 TCGAGTATGTGCAAGTTTTGATTTT 58.266 32.000 0.00 0.00 0.00 1.82
410 411 6.312399 TCGAGTATGTGCAAGTTTTGATTT 57.688 33.333 0.00 0.00 0.00 2.17
411 412 5.940192 TCGAGTATGTGCAAGTTTTGATT 57.060 34.783 0.00 0.00 0.00 2.57
412 413 5.940192 TTCGAGTATGTGCAAGTTTTGAT 57.060 34.783 0.00 0.00 0.00 2.57
413 414 5.688823 CATTCGAGTATGTGCAAGTTTTGA 58.311 37.500 0.00 0.00 0.00 2.69
414 415 4.321745 GCATTCGAGTATGTGCAAGTTTTG 59.678 41.667 0.00 0.00 37.52 2.44
415 416 4.216257 AGCATTCGAGTATGTGCAAGTTTT 59.784 37.500 0.00 0.00 39.94 2.43
416 417 3.753272 AGCATTCGAGTATGTGCAAGTTT 59.247 39.130 0.00 0.00 39.94 2.66
417 418 3.125829 CAGCATTCGAGTATGTGCAAGTT 59.874 43.478 0.00 0.00 39.94 2.66
418 419 2.674852 CAGCATTCGAGTATGTGCAAGT 59.325 45.455 0.00 0.00 39.94 3.16
419 420 2.031314 CCAGCATTCGAGTATGTGCAAG 59.969 50.000 0.00 4.20 39.94 4.01
420 421 2.009051 CCAGCATTCGAGTATGTGCAA 58.991 47.619 0.00 0.00 39.94 4.08
421 422 1.655484 CCAGCATTCGAGTATGTGCA 58.345 50.000 10.08 0.00 39.94 4.57
422 423 0.940126 CCCAGCATTCGAGTATGTGC 59.060 55.000 0.00 0.86 37.84 4.57
423 424 2.205074 GACCCAGCATTCGAGTATGTG 58.795 52.381 0.00 0.00 0.00 3.21
424 425 1.831106 TGACCCAGCATTCGAGTATGT 59.169 47.619 0.00 0.00 0.00 2.29
425 426 2.602257 TGACCCAGCATTCGAGTATG 57.398 50.000 0.00 0.00 0.00 2.39
426 427 2.435805 ACATGACCCAGCATTCGAGTAT 59.564 45.455 0.00 0.00 0.00 2.12
427 428 1.831106 ACATGACCCAGCATTCGAGTA 59.169 47.619 0.00 0.00 0.00 2.59
428 429 0.615331 ACATGACCCAGCATTCGAGT 59.385 50.000 0.00 0.00 0.00 4.18
429 430 2.205074 GTACATGACCCAGCATTCGAG 58.795 52.381 0.00 0.00 0.00 4.04
430 431 1.470805 CGTACATGACCCAGCATTCGA 60.471 52.381 0.00 0.00 0.00 3.71
431 432 0.930310 CGTACATGACCCAGCATTCG 59.070 55.000 0.00 0.00 0.00 3.34
432 433 0.657840 GCGTACATGACCCAGCATTC 59.342 55.000 0.00 0.00 0.00 2.67
433 434 1.089481 CGCGTACATGACCCAGCATT 61.089 55.000 0.00 0.00 0.00 3.56
434 435 1.521457 CGCGTACATGACCCAGCAT 60.521 57.895 0.00 0.00 0.00 3.79
435 436 2.125713 CGCGTACATGACCCAGCA 60.126 61.111 0.00 0.00 0.00 4.41
436 437 1.878522 CTCGCGTACATGACCCAGC 60.879 63.158 5.77 0.00 0.00 4.85
437 438 1.226974 CCTCGCGTACATGACCCAG 60.227 63.158 5.77 0.00 0.00 4.45
438 439 1.040893 ATCCTCGCGTACATGACCCA 61.041 55.000 5.77 0.00 0.00 4.51
439 440 0.956633 TATCCTCGCGTACATGACCC 59.043 55.000 5.77 0.00 0.00 4.46
440 441 2.787601 TTATCCTCGCGTACATGACC 57.212 50.000 5.77 0.00 0.00 4.02
441 442 5.862323 ACATTATTATCCTCGCGTACATGAC 59.138 40.000 5.77 0.00 0.00 3.06
442 443 6.020971 ACATTATTATCCTCGCGTACATGA 57.979 37.500 5.77 0.00 0.00 3.07
443 444 7.248437 TCTACATTATTATCCTCGCGTACATG 58.752 38.462 5.77 0.00 0.00 3.21
444 445 7.387119 TCTACATTATTATCCTCGCGTACAT 57.613 36.000 5.77 0.00 0.00 2.29
445 446 6.128090 CCTCTACATTATTATCCTCGCGTACA 60.128 42.308 5.77 0.00 0.00 2.90
446 447 6.128063 ACCTCTACATTATTATCCTCGCGTAC 60.128 42.308 5.77 0.00 0.00 3.67
447 448 5.942236 ACCTCTACATTATTATCCTCGCGTA 59.058 40.000 5.77 0.00 0.00 4.42
448 449 4.765856 ACCTCTACATTATTATCCTCGCGT 59.234 41.667 5.77 0.00 0.00 6.01
449 450 5.096169 CACCTCTACATTATTATCCTCGCG 58.904 45.833 0.00 0.00 0.00 5.87
450 451 5.864474 CACACCTCTACATTATTATCCTCGC 59.136 44.000 0.00 0.00 0.00 5.03
451 452 7.040340 AGTCACACCTCTACATTATTATCCTCG 60.040 40.741 0.00 0.00 0.00 4.63
452 453 8.184304 AGTCACACCTCTACATTATTATCCTC 57.816 38.462 0.00 0.00 0.00 3.71
453 454 9.303116 CTAGTCACACCTCTACATTATTATCCT 57.697 37.037 0.00 0.00 0.00 3.24
454 455 8.030106 GCTAGTCACACCTCTACATTATTATCC 58.970 40.741 0.00 0.00 0.00 2.59
455 456 8.798402 AGCTAGTCACACCTCTACATTATTATC 58.202 37.037 0.00 0.00 0.00 1.75
456 457 8.713708 AGCTAGTCACACCTCTACATTATTAT 57.286 34.615 0.00 0.00 0.00 1.28
457 458 7.999545 AGAGCTAGTCACACCTCTACATTATTA 59.000 37.037 0.00 0.00 33.19 0.98
458 459 6.836527 AGAGCTAGTCACACCTCTACATTATT 59.163 38.462 0.00 0.00 33.19 1.40
459 460 6.369629 AGAGCTAGTCACACCTCTACATTAT 58.630 40.000 0.00 0.00 33.19 1.28
460 461 5.756918 AGAGCTAGTCACACCTCTACATTA 58.243 41.667 0.00 0.00 33.19 1.90
461 462 4.605183 AGAGCTAGTCACACCTCTACATT 58.395 43.478 0.00 0.00 33.19 2.71
462 463 4.204012 GAGAGCTAGTCACACCTCTACAT 58.796 47.826 0.00 0.00 34.98 2.29
463 464 3.009143 TGAGAGCTAGTCACACCTCTACA 59.991 47.826 0.00 0.00 34.98 2.74
464 465 3.611970 TGAGAGCTAGTCACACCTCTAC 58.388 50.000 0.00 0.00 34.98 2.59
465 466 4.456535 GATGAGAGCTAGTCACACCTCTA 58.543 47.826 0.35 0.00 34.98 2.43
466 467 2.889170 TGAGAGCTAGTCACACCTCT 57.111 50.000 0.00 0.00 37.38 3.69
467 468 2.360801 GGATGAGAGCTAGTCACACCTC 59.639 54.545 0.35 0.00 0.00 3.85
468 469 2.291865 TGGATGAGAGCTAGTCACACCT 60.292 50.000 17.16 0.00 0.00 4.00
469 470 2.100584 CTGGATGAGAGCTAGTCACACC 59.899 54.545 12.77 12.77 0.00 4.16
470 471 2.757868 ACTGGATGAGAGCTAGTCACAC 59.242 50.000 0.35 0.00 0.00 3.82
471 472 3.093057 ACTGGATGAGAGCTAGTCACA 57.907 47.619 0.35 0.00 0.00 3.58
472 473 3.445450 TCAACTGGATGAGAGCTAGTCAC 59.555 47.826 0.35 0.00 0.00 3.67
473 474 3.701664 TCAACTGGATGAGAGCTAGTCA 58.298 45.455 0.85 0.85 0.00 3.41
482 483 6.534436 CACTAGTCATTTCTCAACTGGATGAG 59.466 42.308 0.00 6.43 46.62 2.90
483 484 6.014242 ACACTAGTCATTTCTCAACTGGATGA 60.014 38.462 0.00 0.00 0.00 2.92
484 485 6.169094 ACACTAGTCATTTCTCAACTGGATG 58.831 40.000 0.00 0.00 0.00 3.51
485 486 6.365970 ACACTAGTCATTTCTCAACTGGAT 57.634 37.500 0.00 0.00 0.00 3.41
486 487 5.784177 GACACTAGTCATTTCTCAACTGGA 58.216 41.667 0.00 0.00 44.34 3.86
500 501 4.951094 AGTAGGAGTTGGATGACACTAGTC 59.049 45.833 0.00 0.00 45.19 2.59
501 502 4.936802 AGTAGGAGTTGGATGACACTAGT 58.063 43.478 0.00 0.00 0.00 2.57
502 503 5.886474 TGTAGTAGGAGTTGGATGACACTAG 59.114 44.000 0.00 0.00 0.00 2.57
503 504 5.651139 GTGTAGTAGGAGTTGGATGACACTA 59.349 44.000 0.00 0.00 33.55 2.74
504 505 4.463186 GTGTAGTAGGAGTTGGATGACACT 59.537 45.833 0.00 0.00 33.55 3.55
505 506 4.381718 GGTGTAGTAGGAGTTGGATGACAC 60.382 50.000 0.00 0.00 35.15 3.67
506 507 3.767673 GGTGTAGTAGGAGTTGGATGACA 59.232 47.826 0.00 0.00 0.00 3.58
507 508 3.181489 CGGTGTAGTAGGAGTTGGATGAC 60.181 52.174 0.00 0.00 0.00 3.06
508 509 3.021695 CGGTGTAGTAGGAGTTGGATGA 58.978 50.000 0.00 0.00 0.00 2.92
509 510 3.021695 TCGGTGTAGTAGGAGTTGGATG 58.978 50.000 0.00 0.00 0.00 3.51
510 511 3.377253 TCGGTGTAGTAGGAGTTGGAT 57.623 47.619 0.00 0.00 0.00 3.41
511 512 2.885135 TCGGTGTAGTAGGAGTTGGA 57.115 50.000 0.00 0.00 0.00 3.53
512 513 2.100916 CCATCGGTGTAGTAGGAGTTGG 59.899 54.545 0.00 0.00 0.00 3.77
513 514 3.021695 TCCATCGGTGTAGTAGGAGTTG 58.978 50.000 0.00 0.00 0.00 3.16
514 515 3.377253 TCCATCGGTGTAGTAGGAGTT 57.623 47.619 0.00 0.00 0.00 3.01
515 516 3.596940 ATCCATCGGTGTAGTAGGAGT 57.403 47.619 0.00 0.00 0.00 3.85
516 517 4.939052 AAATCCATCGGTGTAGTAGGAG 57.061 45.455 0.00 0.00 0.00 3.69
517 518 5.221106 CGTAAAATCCATCGGTGTAGTAGGA 60.221 44.000 0.00 0.00 0.00 2.94
518 519 4.980434 CGTAAAATCCATCGGTGTAGTAGG 59.020 45.833 0.00 0.00 0.00 3.18
519 520 4.443394 GCGTAAAATCCATCGGTGTAGTAG 59.557 45.833 0.00 0.00 0.00 2.57
520 521 4.362279 GCGTAAAATCCATCGGTGTAGTA 58.638 43.478 0.00 0.00 0.00 1.82
521 522 3.192466 GCGTAAAATCCATCGGTGTAGT 58.808 45.455 0.00 0.00 0.00 2.73
522 523 2.217847 CGCGTAAAATCCATCGGTGTAG 59.782 50.000 0.00 0.00 0.00 2.74
523 524 2.195096 CGCGTAAAATCCATCGGTGTA 58.805 47.619 0.00 0.00 0.00 2.90
524 525 1.003851 CGCGTAAAATCCATCGGTGT 58.996 50.000 0.00 0.00 0.00 4.16
525 526 0.303493 CCGCGTAAAATCCATCGGTG 59.697 55.000 4.92 0.00 32.93 4.94
526 527 0.176219 TCCGCGTAAAATCCATCGGT 59.824 50.000 4.92 0.00 38.18 4.69
527 528 1.508632 ATCCGCGTAAAATCCATCGG 58.491 50.000 4.92 0.00 38.34 4.18
528 529 4.490319 CGAATATCCGCGTAAAATCCATCG 60.490 45.833 4.92 0.00 0.00 3.84
529 530 4.724036 GCGAATATCCGCGTAAAATCCATC 60.724 45.833 4.92 0.00 45.86 3.51
530 531 3.124636 GCGAATATCCGCGTAAAATCCAT 59.875 43.478 4.92 0.00 45.86 3.41
531 532 2.477375 GCGAATATCCGCGTAAAATCCA 59.523 45.455 4.92 0.00 45.86 3.41
532 533 3.099732 GCGAATATCCGCGTAAAATCC 57.900 47.619 4.92 0.00 45.86 3.01
542 543 5.679906 CAAAATAGTTCCTGCGAATATCCG 58.320 41.667 0.00 0.00 0.00 4.18
543 544 5.239525 AGCAAAATAGTTCCTGCGAATATCC 59.760 40.000 0.00 0.00 39.80 2.59
544 545 6.305693 AGCAAAATAGTTCCTGCGAATATC 57.694 37.500 0.00 0.00 39.80 1.63
545 546 6.699575 AAGCAAAATAGTTCCTGCGAATAT 57.300 33.333 0.00 0.00 39.80 1.28
546 547 7.618502 TTAAGCAAAATAGTTCCTGCGAATA 57.381 32.000 0.00 0.00 39.80 1.75
547 548 6.509418 TTAAGCAAAATAGTTCCTGCGAAT 57.491 33.333 0.00 0.00 39.80 3.34
548 549 5.950758 TTAAGCAAAATAGTTCCTGCGAA 57.049 34.783 0.00 0.00 39.80 4.70
549 550 5.645929 TGATTAAGCAAAATAGTTCCTGCGA 59.354 36.000 0.00 0.00 39.80 5.10
550 551 5.879237 TGATTAAGCAAAATAGTTCCTGCG 58.121 37.500 0.00 0.00 39.80 5.18
551 552 8.707938 ATTTGATTAAGCAAAATAGTTCCTGC 57.292 30.769 21.51 0.00 40.72 4.85
561 562 9.733556 TCTGGACTAGTATTTGATTAAGCAAAA 57.266 29.630 21.51 9.38 40.72 2.44
562 563 9.905713 ATCTGGACTAGTATTTGATTAAGCAAA 57.094 29.630 20.14 20.14 41.49 3.68
563 564 9.330063 CATCTGGACTAGTATTTGATTAAGCAA 57.670 33.333 1.13 1.13 0.00 3.91
564 565 8.704668 TCATCTGGACTAGTATTTGATTAAGCA 58.295 33.333 0.00 0.00 0.00 3.91
565 566 9.202273 CTCATCTGGACTAGTATTTGATTAAGC 57.798 37.037 0.00 0.00 0.00 3.09
576 577 9.256228 ACTTGTTAATTCTCATCTGGACTAGTA 57.744 33.333 0.00 0.00 0.00 1.82
577 578 8.140112 ACTTGTTAATTCTCATCTGGACTAGT 57.860 34.615 0.00 0.00 0.00 2.57
578 579 7.708752 GGACTTGTTAATTCTCATCTGGACTAG 59.291 40.741 0.00 0.00 0.00 2.57
579 580 7.556844 GGACTTGTTAATTCTCATCTGGACTA 58.443 38.462 0.00 0.00 0.00 2.59
580 581 6.410540 GGACTTGTTAATTCTCATCTGGACT 58.589 40.000 0.00 0.00 0.00 3.85
581 582 5.292101 CGGACTTGTTAATTCTCATCTGGAC 59.708 44.000 0.00 0.00 0.00 4.02
582 583 5.186992 TCGGACTTGTTAATTCTCATCTGGA 59.813 40.000 0.00 0.00 0.00 3.86
583 584 5.419542 TCGGACTTGTTAATTCTCATCTGG 58.580 41.667 0.00 0.00 0.00 3.86
584 585 8.648557 TTATCGGACTTGTTAATTCTCATCTG 57.351 34.615 0.00 0.00 0.00 2.90
585 586 9.838339 AATTATCGGACTTGTTAATTCTCATCT 57.162 29.630 0.00 0.00 0.00 2.90
595 596 9.745880 GTCAGAGATAAATTATCGGACTTGTTA 57.254 33.333 18.86 3.70 40.12 2.41
596 597 8.478877 AGTCAGAGATAAATTATCGGACTTGTT 58.521 33.333 21.10 9.01 40.04 2.83
597 598 8.012957 AGTCAGAGATAAATTATCGGACTTGT 57.987 34.615 21.10 9.24 40.04 3.16
598 599 8.879342 AAGTCAGAGATAAATTATCGGACTTG 57.121 34.615 28.40 16.63 44.42 3.16
601 602 9.915629 ACATAAGTCAGAGATAAATTATCGGAC 57.084 33.333 18.66 18.66 40.12 4.79
602 603 9.914131 CACATAAGTCAGAGATAAATTATCGGA 57.086 33.333 7.29 4.63 40.12 4.55
603 604 9.144747 CCACATAAGTCAGAGATAAATTATCGG 57.855 37.037 7.29 2.56 40.12 4.18
604 605 9.698309 ACCACATAAGTCAGAGATAAATTATCG 57.302 33.333 7.29 0.00 40.12 2.92
607 608 8.988060 TGGACCACATAAGTCAGAGATAAATTA 58.012 33.333 0.00 0.00 35.89 1.40
608 609 7.861629 TGGACCACATAAGTCAGAGATAAATT 58.138 34.615 0.00 0.00 35.89 1.82
609 610 7.437713 TGGACCACATAAGTCAGAGATAAAT 57.562 36.000 0.00 0.00 35.89 1.40
610 611 6.867519 TGGACCACATAAGTCAGAGATAAA 57.132 37.500 0.00 0.00 35.89 1.40
611 612 6.867519 TTGGACCACATAAGTCAGAGATAA 57.132 37.500 0.00 0.00 35.89 1.75
612 613 7.437713 AATTGGACCACATAAGTCAGAGATA 57.562 36.000 0.00 0.00 35.89 1.98
613 614 5.965033 ATTGGACCACATAAGTCAGAGAT 57.035 39.130 0.00 0.00 35.89 2.75
614 615 5.762179 AATTGGACCACATAAGTCAGAGA 57.238 39.130 0.00 0.00 35.89 3.10
615 616 6.017605 GCATAATTGGACCACATAAGTCAGAG 60.018 42.308 0.00 0.00 35.89 3.35
616 617 5.822519 GCATAATTGGACCACATAAGTCAGA 59.177 40.000 0.00 0.00 35.89 3.27
617 618 5.589855 TGCATAATTGGACCACATAAGTCAG 59.410 40.000 0.00 0.00 35.89 3.51
618 619 5.504853 TGCATAATTGGACCACATAAGTCA 58.495 37.500 0.00 0.00 35.89 3.41
619 620 6.639632 ATGCATAATTGGACCACATAAGTC 57.360 37.500 0.00 0.00 0.00 3.01
620 621 6.490040 GGTATGCATAATTGGACCACATAAGT 59.510 38.462 8.28 0.00 0.00 2.24
621 622 6.716628 AGGTATGCATAATTGGACCACATAAG 59.283 38.462 8.28 0.00 0.00 1.73
622 623 6.609876 AGGTATGCATAATTGGACCACATAA 58.390 36.000 8.28 0.00 0.00 1.90
623 624 6.044287 AGAGGTATGCATAATTGGACCACATA 59.956 38.462 8.28 0.00 0.00 2.29
624 625 5.065613 AGGTATGCATAATTGGACCACAT 57.934 39.130 8.28 0.00 0.00 3.21
625 626 4.165950 AGAGGTATGCATAATTGGACCACA 59.834 41.667 8.28 0.00 0.00 4.17
626 627 4.516698 CAGAGGTATGCATAATTGGACCAC 59.483 45.833 8.28 5.71 0.00 4.16
627 628 4.411869 TCAGAGGTATGCATAATTGGACCA 59.588 41.667 8.28 0.00 0.00 4.02
628 629 4.973168 TCAGAGGTATGCATAATTGGACC 58.027 43.478 8.28 6.99 0.00 4.46
629 630 5.822519 TGTTCAGAGGTATGCATAATTGGAC 59.177 40.000 8.28 9.64 0.00 4.02
630 631 6.000246 TGTTCAGAGGTATGCATAATTGGA 58.000 37.500 8.28 0.35 0.00 3.53
631 632 6.889301 ATGTTCAGAGGTATGCATAATTGG 57.111 37.500 8.28 0.00 0.00 3.16
638 639 9.625747 TCATTTATTTATGTTCAGAGGTATGCA 57.374 29.630 0.00 0.00 0.00 3.96
726 737 1.915769 GCTCCCATCCTATCCGGCT 60.916 63.158 0.00 0.00 0.00 5.52
776 787 1.376553 GTCTCCACCTTGGCTCAGC 60.377 63.158 0.00 0.00 37.47 4.26
777 788 0.036577 CTGTCTCCACCTTGGCTCAG 60.037 60.000 0.00 0.00 37.47 3.35
778 789 0.471780 TCTGTCTCCACCTTGGCTCA 60.472 55.000 0.00 0.00 37.47 4.26
779 790 0.036858 GTCTGTCTCCACCTTGGCTC 60.037 60.000 0.00 0.00 37.47 4.70
780 791 0.764369 TGTCTGTCTCCACCTTGGCT 60.764 55.000 0.00 0.00 37.47 4.75
809 820 1.830408 TGGGGGTGAAAAAGGCGTG 60.830 57.895 0.00 0.00 0.00 5.34
872 884 1.472878 GAACGGAATGGGAAAGGAAGC 59.527 52.381 0.00 0.00 0.00 3.86
964 984 0.614134 AGGGTTGGACTACCGGTCTC 60.614 60.000 12.40 7.06 43.97 3.36
1203 1232 2.043450 AGCAGGTCGAGGAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
1206 1235 4.154347 GGCAGCAGGTCGAGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
2452 2490 9.264719 CTCTATGCATCAAGACACATGTATAAA 57.735 33.333 0.19 0.00 30.20 1.40
2718 2764 5.644977 ATCACTCACTGTCGAAACTATCA 57.355 39.130 0.00 0.00 0.00 2.15
2731 2777 5.190528 ACCTGGATCACATAAATCACTCACT 59.809 40.000 0.00 0.00 0.00 3.41
2883 2936 4.090761 TCTCCATTGATAATCTGTGCCC 57.909 45.455 0.00 0.00 0.00 5.36
2885 2938 5.048224 CCCATTCTCCATTGATAATCTGTGC 60.048 44.000 0.00 0.00 0.00 4.57
2898 2951 3.816842 GCAATGCTATCCCCATTCTCCAT 60.817 47.826 0.00 0.00 30.90 3.41
2909 2962 3.311871 CAGACAACAGAGCAATGCTATCC 59.688 47.826 8.12 0.00 39.88 2.59
2937 2990 4.499696 CCAGATATCCAAAATTTCACCCGC 60.500 45.833 0.00 0.00 0.00 6.13
2940 2993 7.225341 GCATTTCCAGATATCCAAAATTTCACC 59.775 37.037 0.00 0.00 0.00 4.02
2960 3013 4.510340 GGCCATCAGATCAAAATGCATTTC 59.490 41.667 24.28 12.48 0.00 2.17
3054 3120 0.607620 GGCAGCATTACCAAGCCAAA 59.392 50.000 0.00 0.00 44.59 3.28
3094 3160 2.231964 CCAAATCACCAACACCATCCAG 59.768 50.000 0.00 0.00 0.00 3.86
3116 3182 1.967319 ACCAACAAGCACTGTACAGG 58.033 50.000 26.12 15.85 37.23 4.00
3125 3196 0.179078 AACCGTCGTACCAACAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
3187 3260 1.379044 GCACCTTAGCATGCACCCT 60.379 57.895 21.98 0.61 41.65 4.34
3293 3424 1.618837 ACTTCACACGGTACTGCAGAT 59.381 47.619 23.35 7.41 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.