Multiple sequence alignment - TraesCS2D01G553700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G553700 chr2D 100.000 2454 0 0 1 2454 628269205 628271658 0.000000e+00 4532.0
1 TraesCS2D01G553700 chr2D 84.485 709 49 17 909 1597 628984851 628984184 0.000000e+00 643.0
2 TraesCS2D01G553700 chr2D 85.870 552 41 17 907 1457 628574601 628574086 9.920000e-154 553.0
3 TraesCS2D01G553700 chr2D 82.263 327 56 2 1935 2260 99722409 99722084 5.170000e-72 281.0
4 TraesCS2D01G553700 chr2D 84.422 199 6 3 711 884 628574870 628574672 3.240000e-39 172.0
5 TraesCS2D01G553700 chr2D 95.283 106 5 0 202 307 628576130 628576025 4.200000e-38 169.0
6 TraesCS2D01G553700 chr2D 78.281 221 33 10 593 804 628269500 628269714 7.120000e-26 128.0
7 TraesCS2D01G553700 chr2D 78.281 221 33 10 296 510 628269797 628270008 7.120000e-26 128.0
8 TraesCS2D01G553700 chr2D 89.216 102 11 0 1802 1903 628572991 628572890 7.120000e-26 128.0
9 TraesCS2D01G553700 chr2D 84.559 136 13 3 306 433 628575020 628574885 7.120000e-26 128.0
10 TraesCS2D01G553700 chr2D 88.660 97 8 2 418 514 628574866 628574773 5.550000e-22 115.0
11 TraesCS2D01G553700 chr2D 90.476 84 7 1 1478 1560 628574020 628573937 2.580000e-20 110.0
12 TraesCS2D01G553700 chr2D 78.857 175 21 10 303 471 628985157 628984993 1.200000e-18 104.0
13 TraesCS2D01G553700 chr2D 100.000 51 0 0 834 884 628984974 628984924 7.220000e-16 95.3
14 TraesCS2D01G553700 chr2D 100.000 39 0 0 1443 1481 628574071 628574033 3.380000e-09 73.1
15 TraesCS2D01G553700 chr2D 100.000 36 0 0 849 884 628262454 628262489 1.570000e-07 67.6
16 TraesCS2D01G553700 chr2B 93.120 814 39 10 1658 2454 771489498 771490311 0.000000e+00 1177.0
17 TraesCS2D01G553700 chr2B 84.797 1184 63 59 538 1633 771413493 771414647 0.000000e+00 1081.0
18 TraesCS2D01G553700 chr2B 91.967 610 37 9 1658 2258 771426308 771426914 0.000000e+00 845.0
19 TraesCS2D01G553700 chr2B 86.519 675 41 27 835 1484 771968327 771967678 0.000000e+00 697.0
20 TraesCS2D01G553700 chr2B 96.970 165 4 1 199 362 771413315 771413479 2.400000e-70 276.0
21 TraesCS2D01G553700 chr2B 83.942 137 14 4 379 514 771413635 771413764 9.210000e-25 124.0
22 TraesCS2D01G553700 chr2B 100.000 32 0 0 1565 1596 771967608 771967577 2.640000e-05 60.2
23 TraesCS2D01G553700 chr2A 84.046 865 64 32 805 1613 758588343 758589189 0.000000e+00 765.0
24 TraesCS2D01G553700 chr2A 78.354 328 38 13 2157 2454 769629774 769629450 5.390000e-42 182.0
25 TraesCS2D01G553700 chr2A 78.049 328 39 14 2157 2454 191934140 191933816 2.510000e-40 176.0
26 TraesCS2D01G553700 chr2A 96.721 61 2 0 803 863 758568030 758568090 4.320000e-18 102.0
27 TraesCS2D01G553700 chr2A 85.714 84 11 1 1821 1903 758596374 758596457 1.210000e-13 87.9
28 TraesCS2D01G553700 chr2A 83.333 96 11 2 377 471 758580281 758580372 1.560000e-12 84.2
29 TraesCS2D01G553700 chr3B 92.837 349 21 4 1921 2266 823178975 823179322 1.010000e-138 503.0
30 TraesCS2D01G553700 chr3B 96.154 130 5 0 72 201 482487301 482487430 1.910000e-51 213.0
31 TraesCS2D01G553700 chr3B 92.517 147 8 3 73 217 157251782 157251637 8.890000e-50 207.0
32 TraesCS2D01G553700 chr3B 94.505 91 4 1 2365 2454 823179322 823179412 3.290000e-29 139.0
33 TraesCS2D01G553700 chr4D 79.007 443 53 15 1921 2355 100360620 100360210 1.450000e-67 267.0
34 TraesCS2D01G553700 chr4D 90.968 155 10 4 73 225 492804282 492804434 3.200000e-49 206.0
35 TraesCS2D01G553700 chr7A 78.700 446 51 19 1921 2355 437076680 437076268 8.710000e-65 257.0
36 TraesCS2D01G553700 chr7A 94.444 90 5 0 1661 1750 120755365 120755454 3.290000e-29 139.0
37 TraesCS2D01G553700 chr3A 78.427 445 53 19 1921 2355 734449884 734449473 1.460000e-62 250.0
38 TraesCS2D01G553700 chr3A 77.705 305 64 4 1935 2237 100436717 100436415 1.500000e-42 183.0
39 TraesCS2D01G553700 chr3A 94.444 90 5 0 1661 1750 739741888 739741799 3.290000e-29 139.0
40 TraesCS2D01G553700 chr7B 96.875 128 4 0 73 200 461475693 461475566 5.310000e-52 215.0
41 TraesCS2D01G553700 chr7B 79.930 284 54 3 1952 2234 511145678 511145397 3.200000e-49 206.0
42 TraesCS2D01G553700 chr6B 95.489 133 6 0 71 203 550687710 550687578 1.910000e-51 213.0
43 TraesCS2D01G553700 chr3D 96.154 130 5 0 74 203 358792509 358792638 1.910000e-51 213.0
44 TraesCS2D01G553700 chr1B 96.154 130 5 0 74 203 96515823 96515952 1.910000e-51 213.0
45 TraesCS2D01G553700 chr1B 94.815 135 6 1 70 204 25258266 25258133 2.470000e-50 209.0
46 TraesCS2D01G553700 chr1B 83.412 211 28 6 2151 2355 534946316 534946525 3.220000e-44 189.0
47 TraesCS2D01G553700 chr1D 94.776 134 7 0 74 207 469018558 469018691 2.470000e-50 209.0
48 TraesCS2D01G553700 chr6A 94.444 90 5 0 1661 1750 284822598 284822687 3.290000e-29 139.0
49 TraesCS2D01G553700 chr6A 94.444 90 5 0 1661 1750 564880311 564880400 3.290000e-29 139.0
50 TraesCS2D01G553700 chr4A 94.444 90 5 0 1661 1750 113866159 113866070 3.290000e-29 139.0
51 TraesCS2D01G553700 chr1A 94.444 90 5 0 1661 1750 516430172 516430083 3.290000e-29 139.0
52 TraesCS2D01G553700 chr1A 93.333 90 6 0 1661 1750 530727130 530727219 1.530000e-27 134.0
53 TraesCS2D01G553700 chr5D 95.402 87 3 1 805 890 15558537 15558451 1.180000e-28 137.0
54 TraesCS2D01G553700 chr5D 92.308 52 1 1 1562 1613 15553716 15553668 1.220000e-08 71.3
55 TraesCS2D01G553700 chr5D 100.000 32 0 0 2393 2424 61867006 61866975 2.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G553700 chr2D 628269205 628271658 2453 False 1596.000000 4532 85.520667 1 2454 3 chr2D.!!$F2 2453
1 TraesCS2D01G553700 chr2D 628984184 628985157 973 True 280.766667 643 87.780667 303 1597 3 chr2D.!!$R3 1294
2 TraesCS2D01G553700 chr2B 771489498 771490311 813 False 1177.000000 1177 93.120000 1658 2454 1 chr2B.!!$F2 796
3 TraesCS2D01G553700 chr2B 771426308 771426914 606 False 845.000000 845 91.967000 1658 2258 1 chr2B.!!$F1 600
4 TraesCS2D01G553700 chr2B 771413315 771414647 1332 False 493.666667 1081 88.569667 199 1633 3 chr2B.!!$F3 1434
5 TraesCS2D01G553700 chr2B 771967577 771968327 750 True 378.600000 697 93.259500 835 1596 2 chr2B.!!$R1 761
6 TraesCS2D01G553700 chr2A 758588343 758589189 846 False 765.000000 765 84.046000 805 1613 1 chr2A.!!$F3 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 1035 0.033642 GGATAGGACGGCAACTAGGC 59.966 60.0 0.0 0.0 39.93 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 1993 0.114954 ACGTAACCTACCCTGACCCA 59.885 55.0 0.0 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.937634 GAAAATGCATATTCAAATCTCCAACT 57.062 30.769 0.00 0.00 0.00 3.16
26 27 9.374838 GAAAATGCATATTCAAATCTCCAACTT 57.625 29.630 0.00 0.00 0.00 2.66
27 28 8.712285 AAATGCATATTCAAATCTCCAACTTG 57.288 30.769 0.00 0.00 0.00 3.16
28 29 7.649533 ATGCATATTCAAATCTCCAACTTGA 57.350 32.000 0.00 0.00 0.00 3.02
29 30 7.649533 TGCATATTCAAATCTCCAACTTGAT 57.350 32.000 0.00 0.00 0.00 2.57
30 31 8.070034 TGCATATTCAAATCTCCAACTTGATT 57.930 30.769 0.00 0.00 34.75 2.57
31 32 7.977293 TGCATATTCAAATCTCCAACTTGATTG 59.023 33.333 0.00 0.00 38.12 2.67
32 33 7.977853 GCATATTCAAATCTCCAACTTGATTGT 59.022 33.333 0.00 0.00 36.47 2.71
33 34 9.865321 CATATTCAAATCTCCAACTTGATTGTT 57.135 29.630 0.00 0.00 36.47 2.83
35 36 6.957920 TCAAATCTCCAACTTGATTGTTCA 57.042 33.333 0.00 0.00 36.47 3.18
36 37 7.528996 TCAAATCTCCAACTTGATTGTTCAT 57.471 32.000 0.00 0.00 36.47 2.57
37 38 7.372714 TCAAATCTCCAACTTGATTGTTCATG 58.627 34.615 0.00 0.00 36.47 3.07
38 39 6.906157 AATCTCCAACTTGATTGTTCATGT 57.094 33.333 0.00 0.00 40.79 3.21
39 40 8.298854 CAAATCTCCAACTTGATTGTTCATGTA 58.701 33.333 0.00 0.00 38.81 2.29
40 41 8.408043 AATCTCCAACTTGATTGTTCATGTAA 57.592 30.769 0.00 0.00 38.81 2.41
41 42 7.202016 TCTCCAACTTGATTGTTCATGTAAC 57.798 36.000 0.00 0.00 38.81 2.50
42 43 6.998074 TCTCCAACTTGATTGTTCATGTAACT 59.002 34.615 0.00 0.00 38.81 2.24
43 44 7.502226 TCTCCAACTTGATTGTTCATGTAACTT 59.498 33.333 0.00 0.00 38.81 2.66
44 45 8.684386 TCCAACTTGATTGTTCATGTAACTTA 57.316 30.769 0.00 0.00 38.81 2.24
45 46 9.295825 TCCAACTTGATTGTTCATGTAACTTAT 57.704 29.630 0.00 0.00 38.81 1.73
46 47 9.345517 CCAACTTGATTGTTCATGTAACTTATG 57.654 33.333 0.00 0.00 38.81 1.90
47 48 8.853345 CAACTTGATTGTTCATGTAACTTATGC 58.147 33.333 0.00 0.00 38.81 3.14
48 49 8.340618 ACTTGATTGTTCATGTAACTTATGCT 57.659 30.769 0.00 0.00 38.19 3.79
49 50 8.454106 ACTTGATTGTTCATGTAACTTATGCTC 58.546 33.333 0.00 0.00 38.19 4.26
50 51 7.320443 TGATTGTTCATGTAACTTATGCTCC 57.680 36.000 0.00 0.00 38.99 4.70
51 52 7.112122 TGATTGTTCATGTAACTTATGCTCCT 58.888 34.615 0.00 0.00 38.99 3.69
52 53 6.985188 TTGTTCATGTAACTTATGCTCCTC 57.015 37.500 0.00 0.00 38.99 3.71
53 54 5.109210 TGTTCATGTAACTTATGCTCCTCG 58.891 41.667 0.00 0.00 38.99 4.63
54 55 4.322080 TCATGTAACTTATGCTCCTCGG 57.678 45.455 0.00 0.00 0.00 4.63
55 56 3.704566 TCATGTAACTTATGCTCCTCGGT 59.295 43.478 0.00 0.00 0.00 4.69
56 57 4.161565 TCATGTAACTTATGCTCCTCGGTT 59.838 41.667 0.00 0.00 0.00 4.44
57 58 3.857052 TGTAACTTATGCTCCTCGGTTG 58.143 45.455 0.00 0.00 0.00 3.77
58 59 3.259876 TGTAACTTATGCTCCTCGGTTGT 59.740 43.478 0.00 0.00 0.00 3.32
59 60 3.418684 AACTTATGCTCCTCGGTTGTT 57.581 42.857 0.00 0.00 0.00 2.83
60 61 2.699954 ACTTATGCTCCTCGGTTGTTG 58.300 47.619 0.00 0.00 0.00 3.33
61 62 2.009774 CTTATGCTCCTCGGTTGTTGG 58.990 52.381 0.00 0.00 0.00 3.77
62 63 0.981183 TATGCTCCTCGGTTGTTGGT 59.019 50.000 0.00 0.00 0.00 3.67
63 64 0.110486 ATGCTCCTCGGTTGTTGGTT 59.890 50.000 0.00 0.00 0.00 3.67
64 65 0.817634 TGCTCCTCGGTTGTTGGTTG 60.818 55.000 0.00 0.00 0.00 3.77
65 66 1.949257 CTCCTCGGTTGTTGGTTGC 59.051 57.895 0.00 0.00 0.00 4.17
66 67 0.817634 CTCCTCGGTTGTTGGTTGCA 60.818 55.000 0.00 0.00 0.00 4.08
67 68 1.098712 TCCTCGGTTGTTGGTTGCAC 61.099 55.000 0.00 0.00 0.00 4.57
68 69 1.358759 CTCGGTTGTTGGTTGCACC 59.641 57.895 0.00 0.00 39.22 5.01
69 70 1.077357 TCGGTTGTTGGTTGCACCT 60.077 52.632 6.83 0.00 39.58 4.00
70 71 0.681564 TCGGTTGTTGGTTGCACCTT 60.682 50.000 6.83 0.00 39.58 3.50
71 72 0.248866 CGGTTGTTGGTTGCACCTTC 60.249 55.000 6.83 1.82 39.58 3.46
72 73 0.820871 GGTTGTTGGTTGCACCTTCA 59.179 50.000 6.83 3.89 39.58 3.02
73 74 1.412343 GGTTGTTGGTTGCACCTTCAT 59.588 47.619 6.83 0.00 39.58 2.57
74 75 2.625790 GGTTGTTGGTTGCACCTTCATA 59.374 45.455 6.83 0.00 39.58 2.15
75 76 3.552068 GGTTGTTGGTTGCACCTTCATAC 60.552 47.826 6.83 0.00 39.58 2.39
76 77 3.222173 TGTTGGTTGCACCTTCATACT 57.778 42.857 6.83 0.00 39.58 2.12
77 78 3.146066 TGTTGGTTGCACCTTCATACTC 58.854 45.455 6.83 0.00 39.58 2.59
78 79 2.488153 GTTGGTTGCACCTTCATACTCC 59.512 50.000 6.83 0.00 39.58 3.85
79 80 1.004277 TGGTTGCACCTTCATACTCCC 59.996 52.381 6.83 0.00 39.58 4.30
80 81 1.282157 GGTTGCACCTTCATACTCCCT 59.718 52.381 0.00 0.00 34.73 4.20
81 82 2.633488 GTTGCACCTTCATACTCCCTC 58.367 52.381 0.00 0.00 0.00 4.30
82 83 1.204146 TGCACCTTCATACTCCCTCC 58.796 55.000 0.00 0.00 0.00 4.30
83 84 0.105039 GCACCTTCATACTCCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
84 85 1.486211 CACCTTCATACTCCCTCCGT 58.514 55.000 0.00 0.00 0.00 4.69
85 86 1.409427 CACCTTCATACTCCCTCCGTC 59.591 57.143 0.00 0.00 0.00 4.79
86 87 1.041437 CCTTCATACTCCCTCCGTCC 58.959 60.000 0.00 0.00 0.00 4.79
87 88 1.041437 CTTCATACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
88 89 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
89 90 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
90 91 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
91 92 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
92 93 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
93 94 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
94 95 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
95 96 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
96 97 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
97 98 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
98 99 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
99 100 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
100 101 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
101 102 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
102 103 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
103 104 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
104 105 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
105 106 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
106 107 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
107 108 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
108 109 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
109 110 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
110 111 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
111 112 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
191 192 7.651027 ATCTAAGACAAGAATTTTGGGATGG 57.349 36.000 5.68 0.00 0.00 3.51
192 193 6.789268 TCTAAGACAAGAATTTTGGGATGGA 58.211 36.000 5.68 0.00 0.00 3.41
193 194 5.990120 AAGACAAGAATTTTGGGATGGAG 57.010 39.130 5.68 0.00 0.00 3.86
194 195 4.347607 AGACAAGAATTTTGGGATGGAGG 58.652 43.478 5.68 0.00 0.00 4.30
195 196 3.444029 ACAAGAATTTTGGGATGGAGGG 58.556 45.455 5.68 0.00 0.00 4.30
196 197 3.077391 ACAAGAATTTTGGGATGGAGGGA 59.923 43.478 5.68 0.00 0.00 4.20
197 198 3.677156 AGAATTTTGGGATGGAGGGAG 57.323 47.619 0.00 0.00 0.00 4.30
273 274 3.120546 CGACACCTGTTATGCTCTGTTTG 60.121 47.826 0.00 0.00 0.00 2.93
282 283 5.412594 TGTTATGCTCTGTTTGTGGATCTTC 59.587 40.000 0.00 0.00 0.00 2.87
404 405 7.624360 TTTGTATGGTCTAATAGCTTGTTGG 57.376 36.000 0.00 0.00 0.00 3.77
405 406 6.553953 TGTATGGTCTAATAGCTTGTTGGA 57.446 37.500 0.00 0.00 0.00 3.53
406 407 6.582636 TGTATGGTCTAATAGCTTGTTGGAG 58.417 40.000 0.00 0.00 0.00 3.86
407 408 4.487714 TGGTCTAATAGCTTGTTGGAGG 57.512 45.455 0.00 0.00 0.00 4.30
408 409 3.206964 GGTCTAATAGCTTGTTGGAGGC 58.793 50.000 0.00 0.00 0.00 4.70
409 410 3.206964 GTCTAATAGCTTGTTGGAGGCC 58.793 50.000 0.00 0.00 0.00 5.19
410 411 2.158957 TCTAATAGCTTGTTGGAGGCCG 60.159 50.000 0.00 0.00 0.00 6.13
411 412 0.328258 AATAGCTTGTTGGAGGCCGT 59.672 50.000 0.00 0.00 0.00 5.68
412 413 0.107654 ATAGCTTGTTGGAGGCCGTC 60.108 55.000 0.00 0.00 0.00 4.79
413 414 1.476845 TAGCTTGTTGGAGGCCGTCA 61.477 55.000 0.00 0.00 0.00 4.35
414 415 1.675641 GCTTGTTGGAGGCCGTCAT 60.676 57.895 0.00 0.00 0.00 3.06
415 416 1.244019 GCTTGTTGGAGGCCGTCATT 61.244 55.000 0.00 0.00 0.00 2.57
416 417 1.247567 CTTGTTGGAGGCCGTCATTT 58.752 50.000 0.00 0.00 0.00 2.32
417 418 2.432444 CTTGTTGGAGGCCGTCATTTA 58.568 47.619 0.00 0.00 0.00 1.40
418 419 2.570415 TGTTGGAGGCCGTCATTTAA 57.430 45.000 0.00 0.00 0.00 1.52
419 420 2.156098 TGTTGGAGGCCGTCATTTAAC 58.844 47.619 0.00 0.00 0.00 2.01
420 421 2.224670 TGTTGGAGGCCGTCATTTAACT 60.225 45.455 0.00 0.00 0.00 2.24
421 422 2.817844 GTTGGAGGCCGTCATTTAACTT 59.182 45.455 0.00 0.00 0.00 2.66
422 423 2.432444 TGGAGGCCGTCATTTAACTTG 58.568 47.619 0.00 0.00 0.00 3.16
423 424 1.743394 GGAGGCCGTCATTTAACTTGG 59.257 52.381 0.00 0.00 0.00 3.61
424 425 2.433436 GAGGCCGTCATTTAACTTGGT 58.567 47.619 0.00 0.00 0.00 3.67
425 426 2.159382 AGGCCGTCATTTAACTTGGTG 58.841 47.619 0.00 0.00 0.00 4.17
426 427 1.883926 GGCCGTCATTTAACTTGGTGT 59.116 47.619 0.00 0.00 0.00 4.16
427 428 2.095415 GGCCGTCATTTAACTTGGTGTC 60.095 50.000 0.00 0.00 0.00 3.67
428 429 2.812011 GCCGTCATTTAACTTGGTGTCT 59.188 45.455 0.00 0.00 0.00 3.41
429 430 3.998341 GCCGTCATTTAACTTGGTGTCTA 59.002 43.478 0.00 0.00 0.00 2.59
430 431 4.634443 GCCGTCATTTAACTTGGTGTCTAT 59.366 41.667 0.00 0.00 0.00 1.98
431 432 5.220605 GCCGTCATTTAACTTGGTGTCTATC 60.221 44.000 0.00 0.00 0.00 2.08
432 433 6.106673 CCGTCATTTAACTTGGTGTCTATCT 58.893 40.000 0.00 0.00 0.00 1.98
433 434 6.036083 CCGTCATTTAACTTGGTGTCTATCTG 59.964 42.308 0.00 0.00 0.00 2.90
434 435 6.590292 CGTCATTTAACTTGGTGTCTATCTGT 59.410 38.462 0.00 0.00 0.00 3.41
435 436 7.117812 CGTCATTTAACTTGGTGTCTATCTGTT 59.882 37.037 0.00 0.00 0.00 3.16
436 437 8.230486 GTCATTTAACTTGGTGTCTATCTGTTG 58.770 37.037 0.00 0.00 0.00 3.33
437 438 7.390440 TCATTTAACTTGGTGTCTATCTGTTGG 59.610 37.037 0.00 0.00 0.00 3.77
438 439 4.706842 AACTTGGTGTCTATCTGTTGGT 57.293 40.909 0.00 0.00 0.00 3.67
439 440 4.706842 ACTTGGTGTCTATCTGTTGGTT 57.293 40.909 0.00 0.00 0.00 3.67
440 441 4.389374 ACTTGGTGTCTATCTGTTGGTTG 58.611 43.478 0.00 0.00 0.00 3.77
441 442 3.417069 TGGTGTCTATCTGTTGGTTGG 57.583 47.619 0.00 0.00 0.00 3.77
442 443 2.708861 TGGTGTCTATCTGTTGGTTGGT 59.291 45.455 0.00 0.00 0.00 3.67
443 444 3.137544 TGGTGTCTATCTGTTGGTTGGTT 59.862 43.478 0.00 0.00 0.00 3.67
444 445 3.751698 GGTGTCTATCTGTTGGTTGGTTC 59.248 47.826 0.00 0.00 0.00 3.62
445 446 4.385825 GTGTCTATCTGTTGGTTGGTTCA 58.614 43.478 0.00 0.00 0.00 3.18
446 447 5.003804 GTGTCTATCTGTTGGTTGGTTCAT 58.996 41.667 0.00 0.00 0.00 2.57
447 448 5.003160 TGTCTATCTGTTGGTTGGTTCATG 58.997 41.667 0.00 0.00 0.00 3.07
448 449 5.003804 GTCTATCTGTTGGTTGGTTCATGT 58.996 41.667 0.00 0.00 0.00 3.21
449 450 6.170506 GTCTATCTGTTGGTTGGTTCATGTA 58.829 40.000 0.00 0.00 0.00 2.29
450 451 6.653320 GTCTATCTGTTGGTTGGTTCATGTAA 59.347 38.462 0.00 0.00 0.00 2.41
451 452 7.336931 GTCTATCTGTTGGTTGGTTCATGTAAT 59.663 37.037 0.00 0.00 0.00 1.89
452 453 5.957842 TCTGTTGGTTGGTTCATGTAATC 57.042 39.130 0.00 0.00 0.00 1.75
453 454 5.380900 TCTGTTGGTTGGTTCATGTAATCA 58.619 37.500 0.00 0.00 0.00 2.57
454 455 5.830457 TCTGTTGGTTGGTTCATGTAATCAA 59.170 36.000 0.00 0.00 32.69 2.57
455 456 5.837437 TGTTGGTTGGTTCATGTAATCAAC 58.163 37.500 18.19 18.19 32.69 3.18
456 457 5.221342 TGTTGGTTGGTTCATGTAATCAACC 60.221 40.000 28.22 28.22 32.69 3.77
457 458 4.474394 TGGTTGGTTCATGTAATCAACCA 58.526 39.130 30.96 30.96 41.32 3.67
458 459 5.083122 TGGTTGGTTCATGTAATCAACCAT 58.917 37.500 30.96 0.00 42.41 3.55
459 460 6.249192 TGGTTGGTTCATGTAATCAACCATA 58.751 36.000 30.96 20.05 42.41 2.74
460 461 6.894654 TGGTTGGTTCATGTAATCAACCATAT 59.105 34.615 30.96 0.00 42.41 1.78
461 462 7.068103 TGGTTGGTTCATGTAATCAACCATATC 59.932 37.037 30.96 18.82 42.41 1.63
462 463 7.425606 GTTGGTTCATGTAATCAACCATATCC 58.574 38.462 14.68 3.21 42.41 2.59
463 464 6.910191 TGGTTCATGTAATCAACCATATCCT 58.090 36.000 10.96 0.00 38.48 3.24
464 465 6.772233 TGGTTCATGTAATCAACCATATCCTG 59.228 38.462 10.96 0.00 38.48 3.86
465 466 6.772716 GGTTCATGTAATCAACCATATCCTGT 59.227 38.462 8.08 0.00 33.86 4.00
466 467 7.041098 GGTTCATGTAATCAACCATATCCTGTC 60.041 40.741 8.08 0.00 33.86 3.51
467 468 7.135591 TCATGTAATCAACCATATCCTGTCA 57.864 36.000 0.00 0.00 0.00 3.58
468 469 7.219322 TCATGTAATCAACCATATCCTGTCAG 58.781 38.462 0.00 0.00 0.00 3.51
469 470 5.368145 TGTAATCAACCATATCCTGTCAGC 58.632 41.667 0.00 0.00 0.00 4.26
470 471 4.508551 AATCAACCATATCCTGTCAGCA 57.491 40.909 0.00 0.00 0.00 4.41
471 472 4.719026 ATCAACCATATCCTGTCAGCAT 57.281 40.909 0.00 0.00 0.00 3.79
472 473 4.508551 TCAACCATATCCTGTCAGCATT 57.491 40.909 0.00 0.00 0.00 3.56
473 474 4.454678 TCAACCATATCCTGTCAGCATTC 58.545 43.478 0.00 0.00 0.00 2.67
474 475 4.080413 TCAACCATATCCTGTCAGCATTCA 60.080 41.667 0.00 0.00 0.00 2.57
475 476 4.082665 ACCATATCCTGTCAGCATTCAG 57.917 45.455 0.00 0.00 0.00 3.02
476 477 2.812591 CCATATCCTGTCAGCATTCAGC 59.187 50.000 0.00 0.00 46.19 4.26
496 497 4.503741 GCACTTGGCATTTAACTTGAGA 57.496 40.909 0.00 0.00 43.97 3.27
497 498 5.064441 GCACTTGGCATTTAACTTGAGAT 57.936 39.130 0.00 0.00 43.97 2.75
498 499 5.098211 GCACTTGGCATTTAACTTGAGATC 58.902 41.667 0.00 0.00 43.97 2.75
499 500 5.105997 GCACTTGGCATTTAACTTGAGATCT 60.106 40.000 0.00 0.00 43.97 2.75
500 501 6.320171 CACTTGGCATTTAACTTGAGATCTG 58.680 40.000 0.00 0.00 0.00 2.90
501 502 4.970662 TGGCATTTAACTTGAGATCTGC 57.029 40.909 0.00 0.00 0.00 4.26
502 503 3.374988 TGGCATTTAACTTGAGATCTGCG 59.625 43.478 0.00 0.00 0.00 5.18
503 504 3.375299 GGCATTTAACTTGAGATCTGCGT 59.625 43.478 0.00 0.00 0.00 5.24
504 505 4.142600 GGCATTTAACTTGAGATCTGCGTT 60.143 41.667 0.00 3.05 0.00 4.84
505 506 4.790140 GCATTTAACTTGAGATCTGCGTTG 59.210 41.667 0.00 0.00 0.00 4.10
506 507 5.617751 GCATTTAACTTGAGATCTGCGTTGT 60.618 40.000 0.00 0.00 0.00 3.32
507 508 6.373779 CATTTAACTTGAGATCTGCGTTGTT 58.626 36.000 0.00 0.95 0.00 2.83
508 509 3.885484 AACTTGAGATCTGCGTTGTTG 57.115 42.857 0.00 0.00 0.00 3.33
509 510 1.532868 ACTTGAGATCTGCGTTGTTGC 59.467 47.619 0.00 0.00 0.00 4.17
510 511 1.802960 CTTGAGATCTGCGTTGTTGCT 59.197 47.619 0.00 0.00 35.36 3.91
511 512 1.150827 TGAGATCTGCGTTGTTGCTG 58.849 50.000 0.00 0.00 35.36 4.41
512 513 1.270252 TGAGATCTGCGTTGTTGCTGA 60.270 47.619 0.00 0.00 45.10 4.26
517 518 2.488952 TCTGCGTTGTTGCTGATTACA 58.511 42.857 0.00 0.00 37.82 2.41
518 519 3.073678 TCTGCGTTGTTGCTGATTACAT 58.926 40.909 0.00 0.00 37.82 2.29
519 520 4.249661 TCTGCGTTGTTGCTGATTACATA 58.750 39.130 0.00 0.00 37.82 2.29
520 521 4.875536 TCTGCGTTGTTGCTGATTACATAT 59.124 37.500 0.00 0.00 37.82 1.78
521 522 4.907579 TGCGTTGTTGCTGATTACATATG 58.092 39.130 0.00 0.00 35.36 1.78
522 523 4.201901 TGCGTTGTTGCTGATTACATATGG 60.202 41.667 7.80 0.00 35.36 2.74
523 524 4.035091 GCGTTGTTGCTGATTACATATGGA 59.965 41.667 7.80 0.00 0.00 3.41
524 525 5.277974 GCGTTGTTGCTGATTACATATGGAT 60.278 40.000 7.80 0.45 0.00 3.41
525 526 6.365839 CGTTGTTGCTGATTACATATGGATC 58.634 40.000 7.80 10.45 0.00 3.36
526 527 6.203530 CGTTGTTGCTGATTACATATGGATCT 59.796 38.462 17.16 0.00 0.00 2.75
527 528 7.254898 CGTTGTTGCTGATTACATATGGATCTT 60.255 37.037 17.16 0.00 0.00 2.40
528 529 9.056005 GTTGTTGCTGATTACATATGGATCTTA 57.944 33.333 17.16 6.08 0.00 2.10
529 530 9.625747 TTGTTGCTGATTACATATGGATCTTAA 57.374 29.630 17.16 4.64 0.00 1.85
530 531 9.625747 TGTTGCTGATTACATATGGATCTTAAA 57.374 29.630 17.16 9.26 0.00 1.52
533 534 8.733458 TGCTGATTACATATGGATCTTAAATGC 58.267 33.333 17.16 12.87 0.00 3.56
534 535 8.954350 GCTGATTACATATGGATCTTAAATGCT 58.046 33.333 17.16 0.00 0.00 3.79
547 548 7.332678 GGATCTTAAATGCTTGCAAATTTGACT 59.667 33.333 22.31 2.54 0.00 3.41
558 559 7.383300 GCTTGCAAATTTGACTCTGTCTTTATT 59.617 33.333 22.31 0.00 33.15 1.40
559 560 8.578308 TTGCAAATTTGACTCTGTCTTTATTG 57.422 30.769 22.31 0.00 33.15 1.90
560 561 7.715657 TGCAAATTTGACTCTGTCTTTATTGT 58.284 30.769 22.31 0.00 33.15 2.71
573 574 7.764443 TCTGTCTTTATTGTATGCTAGTTGGAC 59.236 37.037 0.00 0.00 0.00 4.02
590 591 3.822940 TGGACGGTTTAATCTGGTTGTT 58.177 40.909 0.00 0.00 0.00 2.83
722 734 1.053424 TAGAGGCGGTCAACTTGGTT 58.947 50.000 0.00 0.00 0.00 3.67
798 810 1.933853 GGCGTTCAATAGATCTGCGTT 59.066 47.619 5.18 0.00 0.00 4.84
884 921 0.390603 CACTGTCCCGGCAAATCGTA 60.391 55.000 0.00 0.00 0.00 3.43
885 922 0.539986 ACTGTCCCGGCAAATCGTAT 59.460 50.000 0.00 0.00 0.00 3.06
886 923 1.217882 CTGTCCCGGCAAATCGTATC 58.782 55.000 0.00 0.00 0.00 2.24
933 1022 0.568192 TCCAAGGAGGGGAGGATAGG 59.432 60.000 0.00 0.00 38.24 2.57
935 1024 1.723288 CAAGGAGGGGAGGATAGGAC 58.277 60.000 0.00 0.00 0.00 3.85
941 1030 1.446366 GGGAGGATAGGACGGCAAC 59.554 63.158 0.00 0.00 0.00 4.17
942 1031 1.049289 GGGAGGATAGGACGGCAACT 61.049 60.000 0.00 0.00 0.00 3.16
945 1034 1.614413 GAGGATAGGACGGCAACTAGG 59.386 57.143 0.00 0.00 0.00 3.02
946 1035 0.033642 GGATAGGACGGCAACTAGGC 59.966 60.000 0.00 0.00 39.93 3.93
948 1037 1.138266 GATAGGACGGCAACTAGGCAA 59.862 52.381 0.00 0.00 44.47 4.52
949 1038 0.535335 TAGGACGGCAACTAGGCAAG 59.465 55.000 0.00 0.00 44.47 4.01
950 1039 2.399356 GGACGGCAACTAGGCAAGC 61.399 63.158 0.00 0.00 44.47 4.01
951 1040 1.671054 GACGGCAACTAGGCAAGCA 60.671 57.895 0.00 0.00 44.47 3.91
956 1045 1.943340 GGCAACTAGGCAAGCATACTC 59.057 52.381 0.00 0.00 43.51 2.59
964 1053 4.026356 AGGCAAGCATACTCAAGAACTT 57.974 40.909 0.00 0.00 0.00 2.66
972 1061 7.602517 AGCATACTCAAGAACTTACAACATC 57.397 36.000 0.00 0.00 0.00 3.06
1106 1201 4.445452 TTCTCGCCTTCAAGTACGTTAT 57.555 40.909 0.00 0.00 0.00 1.89
1107 1202 4.445452 TCTCGCCTTCAAGTACGTTATT 57.555 40.909 0.00 0.00 0.00 1.40
1108 1203 4.418392 TCTCGCCTTCAAGTACGTTATTC 58.582 43.478 0.00 0.00 0.00 1.75
1109 1204 4.157289 TCTCGCCTTCAAGTACGTTATTCT 59.843 41.667 0.00 0.00 0.00 2.40
1146 1245 4.155462 GCATCTCAATCTCTGCAAGAAACA 59.845 41.667 3.27 0.00 46.34 2.83
1153 1252 2.909965 TGCAAGAAACACCCGGCC 60.910 61.111 0.00 0.00 0.00 6.13
1181 1280 7.706607 GGCATATAATTCCCTTGTTTCTTTCAC 59.293 37.037 0.00 0.00 0.00 3.18
1199 1298 1.024271 ACCTTGACATGTGTGTGTGC 58.976 50.000 1.15 0.00 39.09 4.57
1222 1337 0.390860 CTAGGAACCAGATGGAGCCG 59.609 60.000 5.72 0.00 38.94 5.52
1488 1683 0.685097 TCTTCTCCCCACGACCAAAG 59.315 55.000 0.00 0.00 0.00 2.77
1598 1810 8.919777 ATAACAACTTTGGTTAGCTTTCTAGT 57.080 30.769 0.00 0.00 34.50 2.57
1600 1812 7.964604 ACAACTTTGGTTAGCTTTCTAGTAG 57.035 36.000 0.00 0.00 33.88 2.57
1722 1937 3.463944 GAACGTCTCCTTCCACTGAAAA 58.536 45.455 0.00 0.00 0.00 2.29
1724 1939 1.792949 CGTCTCCTTCCACTGAAAACG 59.207 52.381 0.00 0.00 0.00 3.60
1725 1940 2.802057 CGTCTCCTTCCACTGAAAACGT 60.802 50.000 0.00 0.00 0.00 3.99
1730 1945 2.867975 CCTTCCACTGAAAACGTAACGT 59.132 45.455 0.00 0.00 43.97 3.99
1835 2050 5.743026 TTTGCGTTCTGTAAAGATGACAA 57.257 34.783 0.00 0.00 0.00 3.18
1841 2056 7.172532 TGCGTTCTGTAAAGATGACAACTTAAT 59.827 33.333 0.00 0.00 0.00 1.40
1892 2107 2.830923 CCCACAGCACAATTTATCCCAA 59.169 45.455 0.00 0.00 0.00 4.12
1949 2171 1.072965 ACAAACTCAAGCCTCTCCCTG 59.927 52.381 0.00 0.00 0.00 4.45
1965 2188 4.159135 TCTCCCTGTACCGACTTGTAATTC 59.841 45.833 0.00 0.00 0.00 2.17
2048 2271 8.396272 ACATATCAGGCATTGTATTTCCTTAC 57.604 34.615 0.00 0.00 0.00 2.34
2077 2300 5.331756 CGCAAACAATAATGATTCCGATTGC 60.332 40.000 0.00 0.00 36.87 3.56
2258 2483 7.069331 ACCATAGTTTGAAAAATGAACCAGTGA 59.931 33.333 0.00 0.00 0.00 3.41
2391 2620 7.829211 AGCTTGACTTTCATACTGCCTAAATAA 59.171 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.937634 AGTTGGAGATTTGAATATGCATTTTC 57.062 30.769 19.42 19.42 28.25 2.29
1 2 9.158233 CAAGTTGGAGATTTGAATATGCATTTT 57.842 29.630 3.54 2.48 28.25 1.82
3 4 8.070034 TCAAGTTGGAGATTTGAATATGCATT 57.930 30.769 3.54 0.00 31.85 3.56
4 5 7.649533 TCAAGTTGGAGATTTGAATATGCAT 57.350 32.000 3.79 3.79 31.85 3.96
5 6 7.649533 ATCAAGTTGGAGATTTGAATATGCA 57.350 32.000 2.34 0.00 37.50 3.96
6 7 7.977853 ACAATCAAGTTGGAGATTTGAATATGC 59.022 33.333 2.34 0.00 42.28 3.14
7 8 9.865321 AACAATCAAGTTGGAGATTTGAATATG 57.135 29.630 2.34 0.00 42.28 1.78
9 10 9.076781 TGAACAATCAAGTTGGAGATTTGAATA 57.923 29.630 2.34 0.00 42.28 1.75
10 11 7.954835 TGAACAATCAAGTTGGAGATTTGAAT 58.045 30.769 2.34 0.00 42.28 2.57
11 12 7.345422 TGAACAATCAAGTTGGAGATTTGAA 57.655 32.000 2.34 0.00 42.28 2.69
12 13 6.957920 TGAACAATCAAGTTGGAGATTTGA 57.042 33.333 2.34 0.00 42.28 2.69
13 14 7.149973 ACATGAACAATCAAGTTGGAGATTTG 58.850 34.615 0.00 3.11 42.28 2.32
14 15 7.294017 ACATGAACAATCAAGTTGGAGATTT 57.706 32.000 0.00 0.00 42.28 2.17
15 16 6.906157 ACATGAACAATCAAGTTGGAGATT 57.094 33.333 0.00 0.00 42.28 2.40
16 17 7.667219 AGTTACATGAACAATCAAGTTGGAGAT 59.333 33.333 0.00 0.00 42.28 2.75
17 18 6.998074 AGTTACATGAACAATCAAGTTGGAGA 59.002 34.615 0.00 0.00 42.28 3.71
18 19 7.206981 AGTTACATGAACAATCAAGTTGGAG 57.793 36.000 0.00 0.00 42.28 3.86
19 20 7.581213 AAGTTACATGAACAATCAAGTTGGA 57.419 32.000 0.00 0.00 42.28 3.53
20 21 9.345517 CATAAGTTACATGAACAATCAAGTTGG 57.654 33.333 0.00 0.00 42.28 3.77
21 22 8.853345 GCATAAGTTACATGAACAATCAAGTTG 58.147 33.333 0.00 0.00 40.86 3.16
22 23 8.796475 AGCATAAGTTACATGAACAATCAAGTT 58.204 29.630 0.00 0.00 40.86 2.66
23 24 8.340618 AGCATAAGTTACATGAACAATCAAGT 57.659 30.769 0.00 0.00 40.86 3.16
24 25 7.912250 GGAGCATAAGTTACATGAACAATCAAG 59.088 37.037 0.00 0.00 40.86 3.02
25 26 7.611467 AGGAGCATAAGTTACATGAACAATCAA 59.389 33.333 0.00 0.00 40.86 2.57
26 27 7.112122 AGGAGCATAAGTTACATGAACAATCA 58.888 34.615 0.00 0.00 40.86 2.57
27 28 7.517417 CGAGGAGCATAAGTTACATGAACAATC 60.517 40.741 0.00 0.00 40.86 2.67
28 29 6.258727 CGAGGAGCATAAGTTACATGAACAAT 59.741 38.462 0.00 0.00 40.86 2.71
29 30 5.580691 CGAGGAGCATAAGTTACATGAACAA 59.419 40.000 0.00 0.00 40.86 2.83
30 31 5.109210 CGAGGAGCATAAGTTACATGAACA 58.891 41.667 0.00 0.00 40.86 3.18
31 32 4.508124 CCGAGGAGCATAAGTTACATGAAC 59.492 45.833 0.00 0.00 38.44 3.18
32 33 4.161565 ACCGAGGAGCATAAGTTACATGAA 59.838 41.667 0.00 0.00 0.00 2.57
33 34 3.704566 ACCGAGGAGCATAAGTTACATGA 59.295 43.478 0.00 0.00 0.00 3.07
34 35 4.060038 ACCGAGGAGCATAAGTTACATG 57.940 45.455 0.00 0.00 0.00 3.21
35 36 4.081087 ACAACCGAGGAGCATAAGTTACAT 60.081 41.667 0.00 0.00 0.00 2.29
36 37 3.259876 ACAACCGAGGAGCATAAGTTACA 59.740 43.478 0.00 0.00 0.00 2.41
37 38 3.858247 ACAACCGAGGAGCATAAGTTAC 58.142 45.455 0.00 0.00 0.00 2.50
38 39 4.250464 CAACAACCGAGGAGCATAAGTTA 58.750 43.478 0.00 0.00 0.00 2.24
39 40 3.074412 CAACAACCGAGGAGCATAAGTT 58.926 45.455 0.00 0.00 0.00 2.66
40 41 2.615493 CCAACAACCGAGGAGCATAAGT 60.615 50.000 0.00 0.00 0.00 2.24
41 42 2.009774 CCAACAACCGAGGAGCATAAG 58.990 52.381 0.00 0.00 0.00 1.73
42 43 1.349688 ACCAACAACCGAGGAGCATAA 59.650 47.619 0.00 0.00 0.00 1.90
43 44 0.981183 ACCAACAACCGAGGAGCATA 59.019 50.000 0.00 0.00 0.00 3.14
44 45 0.110486 AACCAACAACCGAGGAGCAT 59.890 50.000 0.00 0.00 0.00 3.79
45 46 0.817634 CAACCAACAACCGAGGAGCA 60.818 55.000 0.00 0.00 0.00 4.26
46 47 1.949257 CAACCAACAACCGAGGAGC 59.051 57.895 0.00 0.00 0.00 4.70
47 48 0.817634 TGCAACCAACAACCGAGGAG 60.818 55.000 0.00 0.00 0.00 3.69
48 49 1.098712 GTGCAACCAACAACCGAGGA 61.099 55.000 0.00 0.00 0.00 3.71
49 50 1.358759 GTGCAACCAACAACCGAGG 59.641 57.895 0.00 0.00 0.00 4.63
61 62 2.633488 GAGGGAGTATGAAGGTGCAAC 58.367 52.381 0.00 0.00 0.00 4.17
62 63 1.559682 GGAGGGAGTATGAAGGTGCAA 59.440 52.381 0.00 0.00 0.00 4.08
63 64 1.204146 GGAGGGAGTATGAAGGTGCA 58.796 55.000 0.00 0.00 0.00 4.57
64 65 0.105039 CGGAGGGAGTATGAAGGTGC 59.895 60.000 0.00 0.00 0.00 5.01
65 66 1.409427 GACGGAGGGAGTATGAAGGTG 59.591 57.143 0.00 0.00 0.00 4.00
66 67 1.688627 GGACGGAGGGAGTATGAAGGT 60.689 57.143 0.00 0.00 0.00 3.50
67 68 1.041437 GGACGGAGGGAGTATGAAGG 58.959 60.000 0.00 0.00 0.00 3.46
68 69 1.041437 GGGACGGAGGGAGTATGAAG 58.959 60.000 0.00 0.00 0.00 3.02
69 70 0.337082 TGGGACGGAGGGAGTATGAA 59.663 55.000 0.00 0.00 0.00 2.57
70 71 0.337082 TTGGGACGGAGGGAGTATGA 59.663 55.000 0.00 0.00 0.00 2.15
71 72 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
72 73 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
73 74 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
74 75 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
75 76 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
76 77 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
77 78 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
78 79 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
79 80 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
80 81 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
81 82 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
82 83 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
83 84 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
84 85 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
85 86 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
165 166 8.534496 CCATCCCAAAATTCTTGTCTTAGATTT 58.466 33.333 0.00 0.00 0.00 2.17
166 167 7.895429 TCCATCCCAAAATTCTTGTCTTAGATT 59.105 33.333 0.00 0.00 0.00 2.40
167 168 7.413446 TCCATCCCAAAATTCTTGTCTTAGAT 58.587 34.615 0.00 0.00 0.00 1.98
168 169 6.789268 TCCATCCCAAAATTCTTGTCTTAGA 58.211 36.000 0.00 0.00 0.00 2.10
169 170 6.096001 CCTCCATCCCAAAATTCTTGTCTTAG 59.904 42.308 0.00 0.00 0.00 2.18
170 171 5.951747 CCTCCATCCCAAAATTCTTGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
171 172 4.774200 CCTCCATCCCAAAATTCTTGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
172 173 4.347607 CCTCCATCCCAAAATTCTTGTCT 58.652 43.478 0.00 0.00 0.00 3.41
173 174 3.448660 CCCTCCATCCCAAAATTCTTGTC 59.551 47.826 0.00 0.00 0.00 3.18
174 175 3.077391 TCCCTCCATCCCAAAATTCTTGT 59.923 43.478 0.00 0.00 0.00 3.16
175 176 3.703052 CTCCCTCCATCCCAAAATTCTTG 59.297 47.826 0.00 0.00 0.00 3.02
176 177 3.337909 ACTCCCTCCATCCCAAAATTCTT 59.662 43.478 0.00 0.00 0.00 2.52
177 178 2.929043 ACTCCCTCCATCCCAAAATTCT 59.071 45.455 0.00 0.00 0.00 2.40
178 179 3.388552 ACTCCCTCCATCCCAAAATTC 57.611 47.619 0.00 0.00 0.00 2.17
179 180 3.858638 AGTACTCCCTCCATCCCAAAATT 59.141 43.478 0.00 0.00 0.00 1.82
180 181 3.474920 AGTACTCCCTCCATCCCAAAAT 58.525 45.455 0.00 0.00 0.00 1.82
181 182 2.929301 AGTACTCCCTCCATCCCAAAA 58.071 47.619 0.00 0.00 0.00 2.44
182 183 2.661176 AGTACTCCCTCCATCCCAAA 57.339 50.000 0.00 0.00 0.00 3.28
183 184 3.471306 AGATAGTACTCCCTCCATCCCAA 59.529 47.826 0.00 0.00 0.00 4.12
184 185 3.072086 AGATAGTACTCCCTCCATCCCA 58.928 50.000 0.00 0.00 0.00 4.37
185 186 3.837399 AGATAGTACTCCCTCCATCCC 57.163 52.381 0.00 0.00 0.00 3.85
186 187 5.252164 AGACTAGATAGTACTCCCTCCATCC 59.748 48.000 0.00 0.00 36.50 3.51
187 188 6.382919 AGACTAGATAGTACTCCCTCCATC 57.617 45.833 0.00 0.00 36.50 3.51
188 189 6.445786 CCTAGACTAGATAGTACTCCCTCCAT 59.554 46.154 11.27 0.00 36.50 3.41
189 190 5.786457 CCTAGACTAGATAGTACTCCCTCCA 59.214 48.000 11.27 0.00 36.50 3.86
190 191 6.024893 TCCTAGACTAGATAGTACTCCCTCC 58.975 48.000 11.27 0.00 36.50 4.30
191 192 7.744678 ATCCTAGACTAGATAGTACTCCCTC 57.255 44.000 11.27 0.00 36.50 4.30
192 193 9.808203 ATAATCCTAGACTAGATAGTACTCCCT 57.192 37.037 11.27 0.00 36.50 4.20
273 274 7.332430 TCAAATTTGCATGAATTGAAGATCCAC 59.668 33.333 13.54 0.00 30.06 4.02
282 283 5.943706 TTGGGTCAAATTTGCATGAATTG 57.056 34.783 13.54 0.00 30.06 2.32
378 379 8.519526 CCAACAAGCTATTAGACCATACAAAAA 58.480 33.333 0.00 0.00 0.00 1.94
380 381 7.398829 TCCAACAAGCTATTAGACCATACAAA 58.601 34.615 0.00 0.00 0.00 2.83
383 384 5.992217 CCTCCAACAAGCTATTAGACCATAC 59.008 44.000 0.00 0.00 0.00 2.39
387 388 3.206964 GCCTCCAACAAGCTATTAGACC 58.793 50.000 0.00 0.00 0.00 3.85
388 389 3.206964 GGCCTCCAACAAGCTATTAGAC 58.793 50.000 0.00 0.00 0.00 2.59
389 390 2.158957 CGGCCTCCAACAAGCTATTAGA 60.159 50.000 0.00 0.00 0.00 2.10
390 391 2.213499 CGGCCTCCAACAAGCTATTAG 58.787 52.381 0.00 0.00 0.00 1.73
391 392 1.557832 ACGGCCTCCAACAAGCTATTA 59.442 47.619 0.00 0.00 0.00 0.98
392 393 0.328258 ACGGCCTCCAACAAGCTATT 59.672 50.000 0.00 0.00 0.00 1.73
393 394 0.107654 GACGGCCTCCAACAAGCTAT 60.108 55.000 0.00 0.00 0.00 2.97
394 395 1.295423 GACGGCCTCCAACAAGCTA 59.705 57.895 0.00 0.00 0.00 3.32
395 396 2.032681 GACGGCCTCCAACAAGCT 59.967 61.111 0.00 0.00 0.00 3.74
396 397 1.244019 AATGACGGCCTCCAACAAGC 61.244 55.000 0.00 0.00 0.00 4.01
397 398 1.247567 AAATGACGGCCTCCAACAAG 58.752 50.000 0.00 0.00 0.00 3.16
398 399 2.554893 GTTAAATGACGGCCTCCAACAA 59.445 45.455 0.00 0.00 0.00 2.83
399 400 2.156098 GTTAAATGACGGCCTCCAACA 58.844 47.619 0.00 0.00 0.00 3.33
400 401 2.433436 AGTTAAATGACGGCCTCCAAC 58.567 47.619 0.00 0.00 0.00 3.77
401 402 2.817258 CAAGTTAAATGACGGCCTCCAA 59.183 45.455 0.00 0.00 0.00 3.53
402 403 2.432444 CAAGTTAAATGACGGCCTCCA 58.568 47.619 0.00 0.00 0.00 3.86
403 404 1.743394 CCAAGTTAAATGACGGCCTCC 59.257 52.381 0.00 0.00 0.00 4.30
404 405 2.161609 CACCAAGTTAAATGACGGCCTC 59.838 50.000 0.00 0.00 0.00 4.70
405 406 2.159382 CACCAAGTTAAATGACGGCCT 58.841 47.619 0.00 0.00 0.00 5.19
406 407 1.883926 ACACCAAGTTAAATGACGGCC 59.116 47.619 0.00 0.00 0.00 6.13
407 408 2.812011 AGACACCAAGTTAAATGACGGC 59.188 45.455 0.00 0.00 0.00 5.68
408 409 6.036083 CAGATAGACACCAAGTTAAATGACGG 59.964 42.308 0.00 0.00 0.00 4.79
409 410 6.590292 ACAGATAGACACCAAGTTAAATGACG 59.410 38.462 0.00 0.00 0.00 4.35
410 411 7.907214 ACAGATAGACACCAAGTTAAATGAC 57.093 36.000 0.00 0.00 0.00 3.06
411 412 7.390440 CCAACAGATAGACACCAAGTTAAATGA 59.610 37.037 0.00 0.00 0.00 2.57
412 413 7.174946 ACCAACAGATAGACACCAAGTTAAATG 59.825 37.037 0.00 0.00 0.00 2.32
413 414 7.231467 ACCAACAGATAGACACCAAGTTAAAT 58.769 34.615 0.00 0.00 0.00 1.40
414 415 6.597562 ACCAACAGATAGACACCAAGTTAAA 58.402 36.000 0.00 0.00 0.00 1.52
415 416 6.182507 ACCAACAGATAGACACCAAGTTAA 57.817 37.500 0.00 0.00 0.00 2.01
416 417 5.818678 ACCAACAGATAGACACCAAGTTA 57.181 39.130 0.00 0.00 0.00 2.24
417 418 4.706842 ACCAACAGATAGACACCAAGTT 57.293 40.909 0.00 0.00 0.00 2.66
418 419 4.389374 CAACCAACAGATAGACACCAAGT 58.611 43.478 0.00 0.00 0.00 3.16
419 420 3.753272 CCAACCAACAGATAGACACCAAG 59.247 47.826 0.00 0.00 0.00 3.61
420 421 3.137544 ACCAACCAACAGATAGACACCAA 59.862 43.478 0.00 0.00 0.00 3.67
421 422 2.708861 ACCAACCAACAGATAGACACCA 59.291 45.455 0.00 0.00 0.00 4.17
422 423 3.418684 ACCAACCAACAGATAGACACC 57.581 47.619 0.00 0.00 0.00 4.16
423 424 4.385825 TGAACCAACCAACAGATAGACAC 58.614 43.478 0.00 0.00 0.00 3.67
424 425 4.698201 TGAACCAACCAACAGATAGACA 57.302 40.909 0.00 0.00 0.00 3.41
425 426 5.003804 ACATGAACCAACCAACAGATAGAC 58.996 41.667 0.00 0.00 0.00 2.59
426 427 5.241403 ACATGAACCAACCAACAGATAGA 57.759 39.130 0.00 0.00 0.00 1.98
427 428 7.336679 TGATTACATGAACCAACCAACAGATAG 59.663 37.037 0.00 0.00 0.00 2.08
428 429 7.171653 TGATTACATGAACCAACCAACAGATA 58.828 34.615 0.00 0.00 0.00 1.98
429 430 6.009589 TGATTACATGAACCAACCAACAGAT 58.990 36.000 0.00 0.00 0.00 2.90
430 431 5.380900 TGATTACATGAACCAACCAACAGA 58.619 37.500 0.00 0.00 0.00 3.41
431 432 5.703978 TGATTACATGAACCAACCAACAG 57.296 39.130 0.00 0.00 0.00 3.16
432 433 5.837437 GTTGATTACATGAACCAACCAACA 58.163 37.500 0.00 0.00 33.13 3.33
437 438 7.285401 AGGATATGGTTGATTACATGAACCAAC 59.715 37.037 17.11 14.73 45.40 3.77
438 439 7.285172 CAGGATATGGTTGATTACATGAACCAA 59.715 37.037 17.11 9.21 45.40 3.67
439 440 6.772233 CAGGATATGGTTGATTACATGAACCA 59.228 38.462 15.91 15.91 46.19 3.67
440 441 6.772716 ACAGGATATGGTTGATTACATGAACC 59.227 38.462 0.00 2.66 0.00 3.62
441 442 7.498900 TGACAGGATATGGTTGATTACATGAAC 59.501 37.037 0.00 0.00 0.00 3.18
442 443 7.572814 TGACAGGATATGGTTGATTACATGAA 58.427 34.615 0.00 0.00 0.00 2.57
443 444 7.135591 TGACAGGATATGGTTGATTACATGA 57.864 36.000 0.00 0.00 0.00 3.07
444 445 6.072838 GCTGACAGGATATGGTTGATTACATG 60.073 42.308 4.26 0.00 0.00 3.21
445 446 6.000219 GCTGACAGGATATGGTTGATTACAT 59.000 40.000 4.26 0.00 0.00 2.29
446 447 5.104569 TGCTGACAGGATATGGTTGATTACA 60.105 40.000 4.26 0.00 0.00 2.41
447 448 5.368145 TGCTGACAGGATATGGTTGATTAC 58.632 41.667 4.26 0.00 0.00 1.89
448 449 5.628797 TGCTGACAGGATATGGTTGATTA 57.371 39.130 4.26 0.00 0.00 1.75
449 450 4.508551 TGCTGACAGGATATGGTTGATT 57.491 40.909 4.26 0.00 0.00 2.57
450 451 4.719026 ATGCTGACAGGATATGGTTGAT 57.281 40.909 7.82 0.00 0.00 2.57
451 452 4.080413 TGAATGCTGACAGGATATGGTTGA 60.080 41.667 10.15 0.00 0.00 3.18
452 453 4.201657 TGAATGCTGACAGGATATGGTTG 58.798 43.478 10.15 0.00 0.00 3.77
453 454 4.458397 CTGAATGCTGACAGGATATGGTT 58.542 43.478 10.15 0.00 0.00 3.67
454 455 3.746751 GCTGAATGCTGACAGGATATGGT 60.747 47.826 10.15 0.00 38.95 3.55
455 456 2.812591 GCTGAATGCTGACAGGATATGG 59.187 50.000 10.15 4.57 38.95 2.74
456 457 3.250280 GTGCTGAATGCTGACAGGATATG 59.750 47.826 10.15 4.90 43.37 1.78
457 458 3.136077 AGTGCTGAATGCTGACAGGATAT 59.864 43.478 10.15 0.95 43.37 1.63
458 459 2.502947 AGTGCTGAATGCTGACAGGATA 59.497 45.455 10.15 0.00 43.37 2.59
459 460 1.281287 AGTGCTGAATGCTGACAGGAT 59.719 47.619 3.21 3.21 43.37 3.24
460 461 0.689055 AGTGCTGAATGCTGACAGGA 59.311 50.000 4.26 0.73 43.37 3.86
461 462 1.199327 CAAGTGCTGAATGCTGACAGG 59.801 52.381 4.26 0.00 43.37 4.00
462 463 1.199327 CCAAGTGCTGAATGCTGACAG 59.801 52.381 0.00 0.00 43.37 3.51
463 464 1.241165 CCAAGTGCTGAATGCTGACA 58.759 50.000 0.00 0.00 43.37 3.58
464 465 0.109412 GCCAAGTGCTGAATGCTGAC 60.109 55.000 0.00 0.00 43.37 3.51
465 466 0.537828 TGCCAAGTGCTGAATGCTGA 60.538 50.000 0.00 0.00 43.37 4.26
466 467 0.530744 ATGCCAAGTGCTGAATGCTG 59.469 50.000 0.00 0.00 43.37 4.41
467 468 1.263356 AATGCCAAGTGCTGAATGCT 58.737 45.000 0.00 0.00 43.37 3.79
468 469 2.088950 AAATGCCAAGTGCTGAATGC 57.911 45.000 0.00 0.00 42.00 3.56
469 470 4.813027 AGTTAAATGCCAAGTGCTGAATG 58.187 39.130 0.00 0.00 42.00 2.67
470 471 5.010922 TCAAGTTAAATGCCAAGTGCTGAAT 59.989 36.000 0.00 0.00 42.00 2.57
471 472 4.340666 TCAAGTTAAATGCCAAGTGCTGAA 59.659 37.500 0.00 0.00 42.00 3.02
472 473 3.888323 TCAAGTTAAATGCCAAGTGCTGA 59.112 39.130 0.00 0.00 42.00 4.26
473 474 4.022935 TCTCAAGTTAAATGCCAAGTGCTG 60.023 41.667 0.00 0.00 42.00 4.41
474 475 4.144297 TCTCAAGTTAAATGCCAAGTGCT 58.856 39.130 0.00 0.00 42.00 4.40
475 476 4.503741 TCTCAAGTTAAATGCCAAGTGC 57.496 40.909 0.00 0.00 41.77 4.40
476 477 6.320171 CAGATCTCAAGTTAAATGCCAAGTG 58.680 40.000 0.00 0.00 0.00 3.16
477 478 5.105997 GCAGATCTCAAGTTAAATGCCAAGT 60.106 40.000 0.00 0.00 0.00 3.16
478 479 5.338365 GCAGATCTCAAGTTAAATGCCAAG 58.662 41.667 0.00 0.00 0.00 3.61
479 480 4.142622 CGCAGATCTCAAGTTAAATGCCAA 60.143 41.667 0.00 0.00 0.00 4.52
480 481 3.374988 CGCAGATCTCAAGTTAAATGCCA 59.625 43.478 0.00 0.00 0.00 4.92
481 482 3.375299 ACGCAGATCTCAAGTTAAATGCC 59.625 43.478 0.00 0.00 0.00 4.40
482 483 4.606457 ACGCAGATCTCAAGTTAAATGC 57.394 40.909 0.00 0.00 0.00 3.56
483 484 5.931532 ACAACGCAGATCTCAAGTTAAATG 58.068 37.500 0.00 0.00 0.00 2.32
484 485 6.373779 CAACAACGCAGATCTCAAGTTAAAT 58.626 36.000 0.00 0.00 0.00 1.40
485 486 5.747565 CAACAACGCAGATCTCAAGTTAAA 58.252 37.500 0.00 0.00 0.00 1.52
486 487 4.319477 GCAACAACGCAGATCTCAAGTTAA 60.319 41.667 0.00 0.00 0.00 2.01
487 488 3.186409 GCAACAACGCAGATCTCAAGTTA 59.814 43.478 0.00 0.00 0.00 2.24
488 489 2.031682 GCAACAACGCAGATCTCAAGTT 60.032 45.455 0.00 0.00 0.00 2.66
489 490 1.532868 GCAACAACGCAGATCTCAAGT 59.467 47.619 0.00 0.00 0.00 3.16
490 491 1.802960 AGCAACAACGCAGATCTCAAG 59.197 47.619 0.00 0.00 0.00 3.02
491 492 1.532437 CAGCAACAACGCAGATCTCAA 59.468 47.619 0.00 0.00 0.00 3.02
492 493 1.150827 CAGCAACAACGCAGATCTCA 58.849 50.000 0.00 0.00 0.00 3.27
493 494 1.432514 TCAGCAACAACGCAGATCTC 58.567 50.000 0.00 0.00 0.00 2.75
494 495 2.105006 ATCAGCAACAACGCAGATCT 57.895 45.000 0.00 0.00 33.30 2.75
495 496 2.907910 AATCAGCAACAACGCAGATC 57.092 45.000 0.00 0.00 37.17 2.75
496 497 3.073678 TGTAATCAGCAACAACGCAGAT 58.926 40.909 0.00 0.00 39.54 2.90
497 498 2.488952 TGTAATCAGCAACAACGCAGA 58.511 42.857 0.00 0.00 0.00 4.26
498 499 2.967459 TGTAATCAGCAACAACGCAG 57.033 45.000 0.00 0.00 0.00 5.18
499 500 4.201901 CCATATGTAATCAGCAACAACGCA 60.202 41.667 1.24 0.00 0.00 5.24
500 501 4.035091 TCCATATGTAATCAGCAACAACGC 59.965 41.667 1.24 0.00 0.00 4.84
501 502 5.733226 TCCATATGTAATCAGCAACAACG 57.267 39.130 1.24 0.00 0.00 4.10
502 503 7.502120 AGATCCATATGTAATCAGCAACAAC 57.498 36.000 14.43 0.00 0.00 3.32
503 504 9.625747 TTAAGATCCATATGTAATCAGCAACAA 57.374 29.630 14.43 1.57 0.00 2.83
504 505 9.625747 TTTAAGATCCATATGTAATCAGCAACA 57.374 29.630 14.43 0.00 0.00 3.33
507 508 8.733458 GCATTTAAGATCCATATGTAATCAGCA 58.267 33.333 14.43 1.24 0.00 4.41
508 509 8.954350 AGCATTTAAGATCCATATGTAATCAGC 58.046 33.333 14.43 9.48 0.00 4.26
511 512 9.565213 GCAAGCATTTAAGATCCATATGTAATC 57.435 33.333 1.24 4.77 0.00 1.75
512 513 9.081204 TGCAAGCATTTAAGATCCATATGTAAT 57.919 29.630 1.24 0.00 0.00 1.89
513 514 8.462589 TGCAAGCATTTAAGATCCATATGTAA 57.537 30.769 1.24 0.00 0.00 2.41
514 515 8.462589 TTGCAAGCATTTAAGATCCATATGTA 57.537 30.769 0.00 0.00 0.00 2.29
515 516 6.964807 TGCAAGCATTTAAGATCCATATGT 57.035 33.333 1.24 0.00 0.00 2.29
516 517 8.827177 ATTTGCAAGCATTTAAGATCCATATG 57.173 30.769 0.00 0.00 0.00 1.78
517 518 9.841295 AAATTTGCAAGCATTTAAGATCCATAT 57.159 25.926 7.21 0.00 0.00 1.78
518 519 9.100554 CAAATTTGCAAGCATTTAAGATCCATA 57.899 29.630 5.01 0.00 0.00 2.74
519 520 7.825270 TCAAATTTGCAAGCATTTAAGATCCAT 59.175 29.630 13.54 0.00 0.00 3.41
520 521 7.118101 GTCAAATTTGCAAGCATTTAAGATCCA 59.882 33.333 13.54 0.00 0.00 3.41
521 522 7.332678 AGTCAAATTTGCAAGCATTTAAGATCC 59.667 33.333 13.54 0.00 0.00 3.36
522 523 8.248117 AGTCAAATTTGCAAGCATTTAAGATC 57.752 30.769 13.54 0.00 0.00 2.75
523 524 8.092687 AGAGTCAAATTTGCAAGCATTTAAGAT 58.907 29.630 13.54 0.00 0.00 2.40
524 525 7.383029 CAGAGTCAAATTTGCAAGCATTTAAGA 59.617 33.333 13.54 1.98 0.00 2.10
525 526 7.170320 ACAGAGTCAAATTTGCAAGCATTTAAG 59.830 33.333 13.54 0.00 0.00 1.85
526 527 6.985645 ACAGAGTCAAATTTGCAAGCATTTAA 59.014 30.769 13.54 0.00 0.00 1.52
527 528 6.514947 ACAGAGTCAAATTTGCAAGCATTTA 58.485 32.000 13.54 0.00 0.00 1.40
528 529 5.362263 ACAGAGTCAAATTTGCAAGCATTT 58.638 33.333 13.54 0.92 0.00 2.32
529 530 4.952460 ACAGAGTCAAATTTGCAAGCATT 58.048 34.783 13.54 0.00 0.00 3.56
530 531 4.280174 AGACAGAGTCAAATTTGCAAGCAT 59.720 37.500 13.54 0.00 34.60 3.79
531 532 3.633525 AGACAGAGTCAAATTTGCAAGCA 59.366 39.130 13.54 0.00 34.60 3.91
532 533 4.234530 AGACAGAGTCAAATTTGCAAGC 57.765 40.909 13.54 3.93 34.60 4.01
533 534 8.697067 CAATAAAGACAGAGTCAAATTTGCAAG 58.303 33.333 13.54 4.23 34.60 4.01
534 535 8.196771 ACAATAAAGACAGAGTCAAATTTGCAA 58.803 29.630 13.54 0.00 34.60 4.08
535 536 7.715657 ACAATAAAGACAGAGTCAAATTTGCA 58.284 30.769 13.54 0.00 34.60 4.08
536 537 9.846248 ATACAATAAAGACAGAGTCAAATTTGC 57.154 29.630 13.54 8.67 34.60 3.68
547 548 7.764443 GTCCAACTAGCATACAATAAAGACAGA 59.236 37.037 0.00 0.00 0.00 3.41
558 559 3.688694 AAACCGTCCAACTAGCATACA 57.311 42.857 0.00 0.00 0.00 2.29
559 560 6.018994 CAGATTAAACCGTCCAACTAGCATAC 60.019 42.308 0.00 0.00 0.00 2.39
560 561 6.046593 CAGATTAAACCGTCCAACTAGCATA 58.953 40.000 0.00 0.00 0.00 3.14
598 599 6.668323 CCTACCGCATATTAAACAGAAATGG 58.332 40.000 0.00 0.00 0.00 3.16
608 613 4.041075 TCAGATTGGCCTACCGCATATTAA 59.959 41.667 3.32 0.00 40.31 1.40
681 686 7.217200 TCTAACAAGCCATCAGACCATATAAC 58.783 38.462 0.00 0.00 0.00 1.89
722 734 7.353414 TGGATGAACAAACCAACAGATAAAA 57.647 32.000 0.00 0.00 0.00 1.52
789 801 0.524816 CATTGGCAGCAACGCAGATC 60.525 55.000 0.00 0.00 0.00 2.75
798 810 0.251474 AGGCTTCTTCATTGGCAGCA 60.251 50.000 0.00 0.00 31.71 4.41
884 921 4.707448 ACTGGACAAGACTACAAGATCGAT 59.293 41.667 0.00 0.00 0.00 3.59
885 922 4.079970 ACTGGACAAGACTACAAGATCGA 58.920 43.478 0.00 0.00 0.00 3.59
886 923 4.442375 ACTGGACAAGACTACAAGATCG 57.558 45.455 0.00 0.00 0.00 3.69
933 1022 1.026718 ATGCTTGCCTAGTTGCCGTC 61.027 55.000 0.00 0.00 0.00 4.79
935 1024 0.657840 GTATGCTTGCCTAGTTGCCG 59.342 55.000 0.00 0.00 0.00 5.69
941 1030 4.764172 AGTTCTTGAGTATGCTTGCCTAG 58.236 43.478 0.00 0.00 0.00 3.02
942 1031 4.826274 AGTTCTTGAGTATGCTTGCCTA 57.174 40.909 0.00 0.00 0.00 3.93
945 1034 5.862924 TGTAAGTTCTTGAGTATGCTTGC 57.137 39.130 0.00 0.00 0.00 4.01
946 1035 7.189693 TGTTGTAAGTTCTTGAGTATGCTTG 57.810 36.000 0.00 0.00 0.00 4.01
948 1037 7.161404 TGATGTTGTAAGTTCTTGAGTATGCT 58.839 34.615 0.00 0.00 0.00 3.79
949 1038 7.364522 TGATGTTGTAAGTTCTTGAGTATGC 57.635 36.000 0.00 0.00 0.00 3.14
950 1039 8.773645 TGTTGATGTTGTAAGTTCTTGAGTATG 58.226 33.333 0.00 0.00 0.00 2.39
951 1040 8.902540 TGTTGATGTTGTAAGTTCTTGAGTAT 57.097 30.769 0.00 0.00 0.00 2.12
956 1045 6.472163 GGTGTTGTTGATGTTGTAAGTTCTTG 59.528 38.462 0.00 0.00 0.00 3.02
964 1053 4.061357 TCTCGGTGTTGTTGATGTTGTA 57.939 40.909 0.00 0.00 0.00 2.41
1081 1176 3.056749 ACGTACTTGAAGGCGAGAAAGAT 60.057 43.478 15.88 0.00 0.00 2.40
1086 1181 4.157289 AGAATAACGTACTTGAAGGCGAGA 59.843 41.667 15.88 5.76 0.00 4.04
1106 1201 2.356665 TGCTTGCTACCCAACAAGAA 57.643 45.000 6.91 0.00 44.89 2.52
1107 1202 2.040278 AGATGCTTGCTACCCAACAAGA 59.960 45.455 6.91 0.00 44.89 3.02
1108 1203 2.421424 GAGATGCTTGCTACCCAACAAG 59.579 50.000 0.00 0.00 44.88 3.16
1109 1204 2.224744 TGAGATGCTTGCTACCCAACAA 60.225 45.455 0.00 0.00 0.00 2.83
1153 1252 4.827284 AGAAACAAGGGAATTATATGCCCG 59.173 41.667 0.00 0.00 46.68 6.13
1181 1280 0.041047 CGCACACACACATGTCAAGG 60.041 55.000 0.00 0.00 36.72 3.61
1199 1298 0.824109 TCCATCTGGTTCCTAGCACG 59.176 55.000 0.00 0.00 36.34 5.34
1222 1337 3.708220 CTCGAGGTGCCGCTTCCTC 62.708 68.421 18.70 18.70 44.65 3.71
1391 1538 2.729479 CCTGCTCCTGCTCCGTCAT 61.729 63.158 0.00 0.00 40.48 3.06
1488 1683 3.631227 CCAAAAGGAGCCTCTCATTCATC 59.369 47.826 0.00 0.00 33.23 2.92
1598 1810 9.177608 ACAAGATGCAATAAAACTAATGAGCTA 57.822 29.630 0.00 0.00 0.00 3.32
1599 1811 8.059798 ACAAGATGCAATAAAACTAATGAGCT 57.940 30.769 0.00 0.00 0.00 4.09
1600 1812 9.443283 CTACAAGATGCAATAAAACTAATGAGC 57.557 33.333 0.00 0.00 0.00 4.26
1637 1852 9.757227 CTCATATTTTATTTTATTTCCCCGCAA 57.243 29.630 0.00 0.00 0.00 4.85
1638 1853 9.137459 TCTCATATTTTATTTTATTTCCCCGCA 57.863 29.630 0.00 0.00 0.00 5.69
1653 1868 9.027129 CGGTGACTTCGTAAATCTCATATTTTA 57.973 33.333 0.00 0.00 0.00 1.52
1654 1869 7.548075 ACGGTGACTTCGTAAATCTCATATTTT 59.452 33.333 0.00 0.00 39.22 1.82
1655 1870 7.039882 ACGGTGACTTCGTAAATCTCATATTT 58.960 34.615 0.00 0.00 39.22 1.40
1656 1871 6.570692 ACGGTGACTTCGTAAATCTCATATT 58.429 36.000 0.00 0.00 39.22 1.28
1657 1872 6.145338 ACGGTGACTTCGTAAATCTCATAT 57.855 37.500 0.00 0.00 39.22 1.78
1658 1873 5.571784 ACGGTGACTTCGTAAATCTCATA 57.428 39.130 0.00 0.00 39.22 2.15
1659 1874 4.451629 ACGGTGACTTCGTAAATCTCAT 57.548 40.909 0.00 0.00 39.22 2.90
1660 1875 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
1661 1876 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
1689 1904 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
1722 1937 1.541147 TCAGGATTTCCGACGTTACGT 59.459 47.619 11.12 11.12 45.10 3.57
1724 1939 6.651755 TTATTTCAGGATTTCCGACGTTAC 57.348 37.500 0.00 0.00 42.08 2.50
1725 1940 7.852971 ATTTATTTCAGGATTTCCGACGTTA 57.147 32.000 0.00 0.00 42.08 3.18
1730 1945 7.852971 AACGTATTTATTTCAGGATTTCCGA 57.147 32.000 0.00 0.00 42.08 4.55
1778 1993 0.114954 ACGTAACCTACCCTGACCCA 59.885 55.000 0.00 0.00 0.00 4.51
1782 1997 2.680805 CGACCTACGTAACCTACCCTGA 60.681 54.545 0.00 0.00 37.22 3.86
1902 2117 2.492001 CGTGCGTTGTATTTGTGCTAC 58.508 47.619 0.00 0.00 0.00 3.58
1913 2128 0.745128 TTGTTTCTCCCGTGCGTTGT 60.745 50.000 0.00 0.00 0.00 3.32
1915 2130 0.379316 GTTTGTTTCTCCCGTGCGTT 59.621 50.000 0.00 0.00 0.00 4.84
1916 2131 0.463116 AGTTTGTTTCTCCCGTGCGT 60.463 50.000 0.00 0.00 0.00 5.24
1917 2132 0.234884 GAGTTTGTTTCTCCCGTGCG 59.765 55.000 0.00 0.00 0.00 5.34
1918 2133 1.305201 TGAGTTTGTTTCTCCCGTGC 58.695 50.000 0.00 0.00 0.00 5.34
1919 2134 2.287009 GCTTGAGTTTGTTTCTCCCGTG 60.287 50.000 0.00 0.00 0.00 4.94
1949 2171 4.201561 GCACGAAGAATTACAAGTCGGTAC 60.202 45.833 0.00 0.00 36.06 3.34
1965 2188 0.785708 GACGATTGCAACGCACGAAG 60.786 55.000 18.70 2.30 38.71 3.79
2048 2271 5.681105 CGGAATCATTATTGTTTGCGGTAAG 59.319 40.000 11.97 0.00 40.53 2.34
2077 2300 9.469807 GATAGCCTCATACCTTGATATAATTCG 57.530 37.037 0.00 0.00 32.72 3.34
2304 2533 7.404985 CCAATGAGAATGAACTTCGTGAATAG 58.595 38.462 0.00 0.00 38.98 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.