>input_sequence_79824
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------------------------------------------------ATGCTTCCTTCGACG---GCTCGGCCTGC---
TACGGCGGCGGCCTACACGCAGCCGCAGCTGAGGCAGATGAGGGCGCAGTGCATCATCTTTCTCGCCTTCAAGTACGTTA
TTCTT----GTTGGGTAGCAAGCATCTCAATCTCTGCAAGAAACACCCGGCCGGGCATATAATTCCCTTGTTTCTTTCAC
CTTGACATGTGTGTGTGC----------------GTGCTAGGAACCAGATGGAGCCGAGGAAGCGGCACCTCGAGATCGC
GCTCGGTGAGGATGACATCGACGGAGCCGGCTGCCACGGCGAGACGACGACGACGA---GCTCACCTTCTCAAGCCTCGT
CGTCCTCTGCCGCACCGTTGCCGCTGCCCCACCTCCTGC-----------------------------CCATCTCCTCGC
TGCGGCTGTCCCCGTCCAT------GACGGAGCAGGAGCAGGAG------------AATCGCGACCACAACGACGACCCT
GCAGCAG---AACATGAGTA------A-----------------------------------------------------
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>chr2D_1_TraesCS2D01G553700
GAAAATGCATATTCAAATCTCCAACTTGATTGTTCATGTAACTTATGCTCCTCGGTTGTTGGTTGCACCTTCATACTCCC
TCCGTCCCAAAATTCTTGTCTTAGATTTGTCTAAATATGGATGTATCAAGTCATGTTTTAATATTAGGTACATCCGTATC
TAGATAAATCTAAGACAAGAATTTTGGGATGGAGGGAGTACTATCTAGTCTAGGATTATCACCAAACCTGGATGAAGTTT
CAATTGCCATTCGACACCTGTTATGCTCTGTTTGTGGATCTTCAATTCATGCAAATTTGACCCAATCCTGTTTGATACGC
AGTAGGTCAATCTAAAGATCTATTACTTCTTTATAATATCAGTCGATATCTTGTACTATTTTTGTATGGTCTAATAGCTT
GTTGGAGGCCGTCATTTAACTTGGTGTCTATCTGTTGGTTGGTTCATGTAATCAACCATATCCTGTCAGCATTCAGCACT
TGGCATTTAACTTGAGATCTGCGTTGTTGCTGATTACATATGGATCTTAAATGCTTGCAAATTTGACTCTGTCTTTATTG
TATGCTAGTTGGACGGTTTAATCTGGTTGTTTTTTCATCCATTTC----TGTTTAATATGCGGTAGGCCAATCTGAAGAC
TTGTTATCGCTTTATAATATTTGATCAATCAGTATGCTTTATTTTGTTATAT-------GGTCTGATGGCTTGTTAGAGG
CGGTCAACTTGGTTTTTATCTGTTGGTTTGTTCATCCAATCAACCATATCCTGTCAGCATTCAGCACTTGGCGTTCAATA
GATCTGCGTTGCT-------------------------GCCAATGAAGAAGCCTATTCAGGTTTGCTGTTTTGGCCTTTT
CTCTTGGCTGCATTCTCATGTCACTGTCCCGGCAAATCGTATC----------------GATCTTGTAGTCTTGTCCA--
----------------------------------GTTGCAGATCCAAGGAGGGGAGGATAGGACGGCAACTAGGCAAGCA
TACTCAAGAACTTACAACATCAACAACACCGAGAACGGCTGAGCAGAGATGCTTCCTTCGACG---GCTCGGCCTGC---
TACGGCGGCGGCCTACACGCAGCCGCAGCTGAGGCAGATGAGGGCGCAGTGCATCATCTTTCTCGCCTTCAAGTACGTTA
TTCTT----GTTGGGTAGCAAGCATCTCAATCTCTGCAAGAAACACCCGGCCGGGCATATAATTCCCTTGTTTCTTTCAC
CTTGACATGTGTGTGTGC----------------GTGCTAGGAACCAGATGGAGCCGAGGAAGCGGCACCTCGAGATCGC
GCTCGGTGAGGATGACATCGACGGAGCCGGCTGCCACGGCGAGACGACGACGACGA---GCTCACCTTCTCAAGCCTCGT
CGTCCTCTGCCGCACCGTTGCCGCTGCCCCACCTCCTGC-----------------------------CCATCTCCTCGC
TGCGGCTGTCCCCGTCCAT------GACGGAGCAGGAGCAGGAG------------AATCGCGACCACAACGACGACCCT
GCAGCAG---AACATGAGTA------ATTGATGGTTGTATCCTCTT-CTCCCCA------------CGACC--------A
AAGATGAATGAGAGGCTCCTTTTGG-----ATACA-AAGTGTTGTTCTCATACATACG----TATAACAACTTTGATTAG
CCTTGTCATACATACATATAAC--AACTTTGGTTAGCTTTCTA-----GTAGCTCATTAGTTTTATT---GCATCTTGTA
GATCTTTTTTTTTGCGGGGAAATAAAATAAAATATGAGATTTACGAAGTCACCGTAGGCGCCGTGTCGTCGACGGGAACG
TCTCCTTCCACTGAAAACGTAACGTCGGAAATCCTGAAATAAATACGTTTTTTTGTCTCTATATAAGGGACATGGGTCAG
GGTAGGTTACGTAGGTCGGGTTCAGAATTTGCGTTCTGTAAAGATGACAACTTAATTTTTTGGCCCGCAACACTAACACT
TTCAGCCCACAGCACAATTTATCCCAATTTAATATAGTAGCACAAATACAACGC-------ACGGGAGAAACAAACTCAA
GCCTCTCCCTGTACCGACTTGTAATT-CTTCGTGCGTTGCAATCGTCACATTCACTTCACGTGGTTCAACACAAATCATG
TATTGACATATCAGGCATTGTATTTCCTTACTTACCGCAAACAATAATGATTCCGATTGCGAATTATATCAAGGTATGAG
GCTATCAGCCTCTTGACTGAACATAAGCTGTGTACACTTCACTGTCACCACCGTCCACCTTCTTCATCTCTACCAT--GA
ACTTGGGCTTGTTTCCGGCAGCAAACTATGTTGTGTTTTTCCACCATGGCCATCGAACCATAGTTTGAAAAATGAACCAG
TGAG----AACTTATTGTTCTAATCATCAAGTATAAATGAAAGCAAAAATTACTATTCACGAAGTTCATTCTCATTGGCT
GGAAATCAATCAATTGTTAACTTCTTGTAAAAAAGCTTGACTTTCATACTGCCTAAATAA---TATAATATAAACATGGC
CAAGCATAATTTATATATACCACAAGAAATTCAAAACTACATTAT
>chr2B_199
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--------------------------------------TACTATCTAGTCTAGGATTATCACCAAACCTGGATGAAGTTT
CAATTGCCATTCGACACCTGTTATGCTCTGTTTCTGGATCTTGAATTCATGCAAATTTGACCCATTCCTGTTTGATACGC
AGTAGGTCAATCTGAAGATCTATTACTTCTTTATAATATTCAGATACGCAGTAGGT------------------------
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---------------------------------------------------------CAAATTTGACCCTGTCTTTAT--
-ATGCTAGTTGGAAGGTTTAATCTGGTTGTCTTTTCATTCATTTCTGTTTGTCTAATATGCGGTAGGCCAATCTGAAGAC
TTGTTATCGCTTTATAATATTTGATCAATCAGTATGCTTTATTTTATTATAT-------GGTCTGATGGCTTGTTAGAGG
CGGTCAACTTGGTGTTTATCTGTTGGTTTGTTCATCCAATCAACCATATCCTGTCAGCATTCAGCACTTGGCGTTCAATA
CATCTGCGTCGCTGCTGATGCATTTGTATATGCTGCACGCCAATGAAGAAGCCTATTCAGGTTTGCTGTTTTGGCCTTTT
CTCTTGGCTGCATTCTCATGTCACTGTCCCGGCAAATCTTG-------------------------TAGTCTTGTCCTAG
TGTGTGCGTGCCTTGTGATGAATAATACATTACGGTTGCAGATCCAAGAAGGATAGGAAGGCAAGGCAAGCAGATACT--
-------GAACTCAACACAT---CAACACCGAGAACGGCTGAGCAGAGATGCTTCCTTCGACG---GCTCGCCCTGC---
TACGGCGGCAGCCTACACGCAGCCGCAGCTGAGGCAGATGAGGGCGCAGTGCATCGTCTTCCTTGCCTTCAAGTACGTTA
----T----GTTGGGCAGCAAGCATCTCAATCTCTGCAGGAATTCCGTTGT----------------TTCTTTCTTTCAT
CTTCACATGTGTGTGTGTGTG------------TGTGCTAGGAACCAGATGGAGCCCAGGAAGCGGCACCTAGAGATCGC
GCTCGGTGAGGATGAGATCGGCGGAGCCGGCTGCCAAGGCGAGACGACGACGAAGA---GCTCGCCTTCTCAAGCCTCGC
CGTCCCCTGCCGCACCGTTGCCGCTGCCACTGTCCCCTCGCTGCGGTTGTCCCCTCGCTGCACCGTTACCGTCTCCTCGC
TGCGGCTGTCCCCGCCGGT------GACGGAGCAGGAGCAGGAG------------AATCGCGAACACAACGACAACCCT
GCAGCAG---AACATGAGTA------ATTGAAGGTTGTATCCTCTT-CT-CCCA------------CGACC--------A
AAAATGAATGTGAGGCTCCTTTTGG-----ATACAAAAGTGTTGTTCTCATACATACG----TATAACAACTTTGATTAG
CCTTGTCATACATAGATATAAC--AACTTTGGTTAGCTTTCTATAGTAG---CTCATTACTTTTATCATCGCATCTTGTA
GATCTTT-------------------------------------------------------------------------
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>chr2D_303
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--------------------------------------------------------------CAATCATGTTTAATAAGC
AGTAGGTCAATCTGAATACCTG-----------------CTGTTGCTTTATAGTACTAATATTATATA------------
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---------------------------------------TATATTTTTATATTTTTTTAGGTCTGATGGCTTGCTGGAGG
CCGTCAACTTGGTGTCTATCT----GTTGGCTCATGTAATCAACCATATCCTGTCAGCACTTGGCACCGTGACAAAA---
---------------------------------------------------------------------TTTGGCCTTTT
CTCTTGGCTGCATTCTCATGTCACTGTCCCGGCAAATCGTGCTGGTTCATTCAGCAA----TCTTGTAGTCTTGTCCTAG
TGTGTGCGTGCCTTGTGATGAATAATACATTACCGCTGCAGATCCAAGAAGGATAGGAAGGCAAGGCAAGCAGATACT--
-------GAACTCAACACAT---CAACACCGAGAACGGCTGAGCAGAGATGCTTCCTTCGACG---GCTCAGCTTGC---
TGCGGCGGCGGCCTTGACGCAGCCGCAGCTGAGGCAGATGAGGGCGCAGTGCATCGTCTTCCTTGCCTTCAAGTACGTTA
----TTCTTGGCCGGTAGCAAGCATCTCAATCTCTGCAGGAATTCCGTTGT----------------TTCTT----TCAT
CTTGACATG--------TGTG------------TGTGATAGGAACCAGATGGAGCCCAGGAAGCGGCACCTCGACATCGC
GCTCGGTGAGGATGACATCGACGGGGCCGGCTGCCACGGCGAGA------CGACGACGAGCTCGCCTTCTCAAGCCTCGT
CGTCCTCTGCTGCACCGTTGCCGCTGCTCCACCTCCTGC-----------------------------CCATCTCCTCGC
TGCGGCTGTCTCCGCCGGT------GACGGAGCAGGAGCAGGAG------------AATCGCCACCGCAACGACGACCCT
GAAGCAA---AGCACGAGTAG--TTGATTGATGGTTGTATTCTCTT-CTCGCCCCTGCTGAGCCATCGACC--------A
AAAATGAATGAGTT--TCCGTTCGG-----ATACAAA-GTGTTGTTCTCATACATACATACATATAACAACTTCGATTAG
CTTTCTCATACATACATACAGC--AACTTTGGTTATCTTTCTA-------------------------------------
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>chr2A_805
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----------------------------------------CAATGAAGAAGCCTATTCAGGTTTGCTGTTTTGGCCTTTT
CTCTTGGCTGCATTCTCATGTCACTGTCCCGGCAAATCGTGCTGATTCATTCAGCGAATGATCTTGTAGTCTTCTCCA--
----------------------------------GTTGCAGATCCAAGGAGGGGAGGATAACTAGGCAAGCA--------
TACTGAAGAACTCACAACATGAACAACACCGCGCACGGCCGAGCAGGGATGCTTCCTTGGTCGTGGGCCCGCCCTGC---
AGGTGCCGCGGCCTTGACGGCGCCGCAGCTGAGGCAGATGAGGGCGCAGTGCCTCGTCTTCCTCGCCTTCAAGTACGTTA
----TTACTGTTGGGTAGCAAGCATCTCACTCTCTGCAAGAATTCCGTTGT----------------TTCTTTCATTCAT
CTCGTCGTGCGTGTGTGATTAACTGATTATATATGTGCCAGGAACCAGATGGAGCCCAGGAAGCGGCACCTCGAGGTCGC
GCTCGGTGAGGATGAGAACGACGGAGCCGGCTGCCACGGCGAGACGCCGACGACGACGAGCTCGCCTTCTCAAGCCTCGT
CGTCCTCTGCCGCACCGTTGCCGCTGCCACACCTCCTGC-----------------------------CCATCTCCTCGC
TGCGGCTGTCCCCGCCCGT------GACGGAGCAGGAGCAGGAGCAGGAGCAGGAGAATCGCCACCGCAACGACGACCCG
GAAGCAG---AACATGAGTA------ATTGATGGTTGTATCCTCTTTCTCCCCACGACTGGGCCATCGACC--------A
AAAATGAATGAGAGGCTCCTTTTGG-----ATACAAA-GTGTTGTTCTCATACATACC----TATAACAACTTTGATTAG
CCTTCTCATACACACACACATATAAACTTTGGTTAGCTTTCTA-----G---CTCATTAGTTTT----------------
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>chr2B_835
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----------------------------------------------------------------------TTGGCCTTTT
CTCTTGGCTGCATTCTCATGTCACCGTCCCGGCAAATCGTGCTGCTTCATTCAGCGA----TC-----------------
----------------------------------------GATCCAAGAAGGATAGGAAGGCAAGGCAAGCAGATACT--
-------GAACTCAACACAT---CAACACCGAGAACGGCTGAGCAGAGATGCTTCCTTCGACG---GCTCGCCCTGCAGG
TGCCGCGGCGGCCTACACGCAGCCGCAGCTGAGGCAGATGAGGGCGCAGTGCCTCGTCTTCCTTGCCTTCAAGTACGTTA
----TTCTTGGCCGGTAGCAAGCATCTCAATCTCTGCAAGAAACGGCCGGCGGGGCATATAATTCCCTTGTTTCTTTCCT
CTTGACATGT-------TGTG------------TGTGCTAGGAACCAGATGGAGCCCAGGAAGCGGCACCTCGAGATCGC
GCTCGGTGAGGATGACATCGACGGAGCCGGCTGCCACGGCGAGACGACGACGACGA---GCTCACCTTCTCAAGCCTCGT
CGTCCTCTGCCGCACCGTTGCCGCTGCCCCACCTTCTGC-----------------------------CCATCTCCTCGC
TGCGGCTGTCTCCGCCGCCGTCGGAGACGGAGCAGGAGCAGGAGCAGTT------GAGTCACCACCGCAACGACGACCCT
GAAGCAACAAAACACGAGTAGTTTTGATTGATGGTTGTATTCTCTT-CTCGCCCCGACTGGGCCATCGACCGTCGACCAA
AAAATGAATGAGTT--TCCGTTCGGATACAATACAAA-GTGTTTTTCTCCTACATACA----TATAAC------------
------------------------AACTTTGGTTAGCTTTCT--------------------------------------
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>chr2B_1658
ATATTG--------------------------------------------------------------------------
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------------------------------------AAATTTACAAAGTCATCGTAGGCGCCGCGTCGTCGACCGAAACG
TCTCCTTCCACTGAAAGCACAACGCCAGAAATCCTGAAATAAATACGTTTTTTTGTCTCTATATAAGGGACAGGGGCCAG
GGTAGGTTACGTAATTCGGGTTCAGAATTTGCTTTCTGTGAAGACGACGGCCTAAGTTTTCGGCCCGCAACACTAACACT
TTCAGCCCACAGCACAATGTATCCCACTTTAATATACTAGCACAAATGCCCATGCGTTGTAACGGGACAAACAAACTCAA
GCCTCTCCCTCTACCGACTTGTAATT-TTTCGTGCGTTGCAATCGTCACATTCACTTTACGTGGTTCAACACAAATCATG
TATTGACATATCAGGCATTGTATTTCCTTATTTACCGCAAACAACAATGATTCCCGTTGTGAATTATATCAAGGTATGAG
GCTATCAGCCTCTTGACTGAACATAAGCTGTGTACACTTCACTGTCACCACCGTCCACCTTCTTCATCTCTACCATATGA
ACTTGGGCTTGTTTCCGGCAGCAAACTATGTTGTGTTTTTCCACCATGGCCATCGAACCATAGTTTGAAAAATGAACCAG
TGGGAGTAAACTTATTGTTCTAATCATCAAGTATAAATGAAAGCAAAAATTAATATTCACGAAGTTCATTCTCATTGGCT
GGAAATCAATCAATTGTTAACTTCTTGTAAAAAAGCTTGACTTTCATACTGCCTAAATACTAGTATAATATAAACATGGC
CAAGCATAATTTATATATACCACAAGAAATTCAAAACTACATTAT
>chr2B_1658
ATATTG--------------------------------------------------------------------------
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------------------------------------AGATGTACGAAGTCACCGTAGGCGCCGCGTCGTCGACGGGAACG
TCTCCTTTCACTGAAAGCACAACGCCGGAAATCCTGAAATAAATACGTTTTTTTGTCTCTATATAAGGGACAGGGTCA--
GGTAGGCTACGTAGGTCGGGTTCA-AATTTGCGTTCTGTGAAGACGACAGCTTAAGTTTTTGGCCCGCAACACTAACACT
TTCAGCCCACAGCACAATTTATCCCACTTGAATACACTAGCACAAATGCCCGTGCGTTGCAACAGGAGAAATAAACTCAA
GCCTCTCCCTCTACCGACATACAATTCTTTCGTGTGTTGCAATCGTCACATTCACTTCACGTGGTCCAATACAAATCATG
TATTGACATATCAGGCATTGTATTTCCTTATTTACCACAAACAATAATGATTCCGATTGTGAATTATATCAAGGTATGAG
GCTATCAGCCTCTTGACTGAACATAAGCTGTGTACACTTCACTGTCACCACCACCCACCTTCTTCATATCTACCAT--GA
ACTTGGGCTTGTTTTCGGCAGCAAACTCTGTTGTGTTTTTCCACCATGGCCATCGAACCATGGTTTGAAAAATGAACCAG
TG------------------------------------------------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
---------------------------------S--------S-------------------------------------
-------------S--------------------------S--S---S-S--------S-S--S---SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------SS
S------------S----------------S-------S-------------S---------------------------
---------------------------------------------S----------------------------------
-------------S------------------------------------------------------------------
S--------S----------------------------------------------------------------------
----------------------------------------SSS-------------------------------------
-------------------------------------------------------------S-S-----SS--SS-SSSS
----S-------S-------S-----------------------------------------------------------
-------------------------------------------------------S----S-------------------
SSSS----------------------------------------S------S---------------------------S
-----------------S--------------------------------------S-----------------------
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--------------S--S--------------------------------------------------------------
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--S-----------------------------------------------------------------------------
-------------------------------------------------SSS--------------S-------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S----------------
----------------S-SS----S-----------------------------------------------S---S---
---------------------------------------S----S----S-----S------------------------
--------------------------S---------S----------S-SSSSS--------------------------
----------S----------------S----------------------------------------------------
------------------------------S----------------------------S--------------------
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--S-------------------------------------------------S---------------------------
-----------------------------------------------------------S--------------------
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>forward_1035
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-------------------------------------------------------GGATAGGACGGCAACTAGGC-----
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>reverse_1993
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------------------------------------------------------------------------TGGGTCAG
GGTAGGTTACGT--------------------------------------------------------------------
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