AutoCloner

Multiple sequence alignment - TraesCS2D01G543600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G543600	chr2D	100.000	2706	0	0	1	2706	621342420	621345125	0.000000e+00	4998
1	TraesCS2D01G543600	chr2D	82.372	607	107	0	1118	1724	621129531	621128925	1.850000e-146	529
2	TraesCS2D01G543600	chr2D	79.769	692	125	10	1039	1728	621265502	621264824	3.130000e-134	488
3	TraesCS2D01G543600	chr2D	88.623	334	26	6	8	339	621261217	621261540	1.950000e-106	396
4	TraesCS2D01G543600	chr2D	88.646	229	18	6	533	760	621263452	621263673	3.430000e-69	272
5	TraesCS2D01G543600	chr2D	91.566	83	6	1	772	853	621263657	621263739	2.200000e-21	113
6	TraesCS2D01G543600	chr2A	91.797	1280	61	11	553	1810	753017280	753018537	0.000000e+00	1742
7	TraesCS2D01G543600	chr2A	93.871	620	22	7	2100	2706	753035086	753035702	0.000000e+00	920
8	TraesCS2D01G543600	chr2A	94.402	518	12	5	8	525	753065330	753065830	0.000000e+00	780
9	TraesCS2D01G543600	chr2A	92.816	515	21	8	8	519	753016695	753017196	0.000000e+00	732
10	TraesCS2D01G543600	chr2A	95.062	324	13	3	533	853	753065908	753066231	8.650000e-140	507
11	TraesCS2D01G543600	chr2A	81.722	569	101	1	1160	1728	753004416	753003851	3.150000e-129	472
12	TraesCS2D01G543600	chr2A	96.914	162	4	1	1942	2103	753034828	753034988	1.230000e-68	270
13	TraesCS2D01G543600	chr2A	78.311	438	79	15	2274	2705	753086026	753086453	4.440000e-68	268
14	TraesCS2D01G543600	chr2A	98.529	68	1	0	1793	1860	753034745	753034812	1.320000e-23	121
15	TraesCS2D01G543600	chr2A	74.121	313	50	21	1776	2059	753085521	753085831	1.710000e-17	100
16	TraesCS2D01G543600	chr2B	82.208	607	108	0	1118	1724	762063151	762062545	8.580000e-145	523
17	TraesCS2D01G543600	chr2B	78.471	785	144	18	951	1728	762071918	762071152	8.710000e-135	490
18	TraesCS2D01G543600	chr2B	81.574	559	68	24	2166	2705	762093042	762093584	1.930000e-116	429
19	TraesCS2D01G543600	chr2B	79.179	341	53	12	1776	2103	762092619	762092954	1.260000e-53	220
20	TraesCS2D01G543600	chrUn	81.669	611	112	0	1114	1724	314618421	314617811	2.400000e-140	508
21	TraesCS2D01G543600	chrUn	78.217	785	146	18	951	1728	342644971	342644205	1.880000e-131	479
22	TraesCS2D01G543600	chrUn	78.217	785	146	18	951	1728	343020521	343019755	1.880000e-131	479

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G543600	chr2D	621342420	621345125	2705	False	4998.000000	4998	100.000000	1	2706	1	chr2D.!!$F1	2705
1	TraesCS2D01G543600	chr2D	621128925	621129531	606	True	529.000000	529	82.372000	1118	1724	1	chr2D.!!$R1	606
2	TraesCS2D01G543600	chr2D	621264824	621265502	678	True	488.000000	488	79.769000	1039	1728	1	chr2D.!!$R2	689
3	TraesCS2D01G543600	chr2D	621261217	621263739	2522	False	260.333333	396	89.611667	8	853	3	chr2D.!!$F2	845
4	TraesCS2D01G543600	chr2A	753016695	753018537	1842	False	1237.000000	1742	92.306500	8	1810	2	chr2A.!!$F1	1802
5	TraesCS2D01G543600	chr2A	753065330	753066231	901	False	643.500000	780	94.732000	8	853	2	chr2A.!!$F3	845
6	TraesCS2D01G543600	chr2A	753003851	753004416	565	True	472.000000	472	81.722000	1160	1728	1	chr2A.!!$R1	568
7	TraesCS2D01G543600	chr2A	753034745	753035702	957	False	437.000000	920	96.438000	1793	2706	3	chr2A.!!$F2	913
8	TraesCS2D01G543600	chr2B	762062545	762063151	606	True	523.000000	523	82.208000	1118	1724	1	chr2B.!!$R1	606
9	TraesCS2D01G543600	chr2B	762071152	762071918	766	True	490.000000	490	78.471000	951	1728	1	chr2B.!!$R2	777
10	TraesCS2D01G543600	chr2B	762092619	762093584	965	False	324.500000	429	80.376500	1776	2705	2	chr2B.!!$F1	929
11	TraesCS2D01G543600	chrUn	314617811	314618421	610	True	508.000000	508	81.669000	1114	1724	1	chrUn.!!$R1	610
12	TraesCS2D01G543600	chrUn	342644205	342644971	766	True	479.000000	479	78.217000	951	1728	1	chrUn.!!$R2	777
13	TraesCS2D01G543600	chrUn	343019755	343020521	766	True	479.000000	479	78.217000	951	1728	1	chrUn.!!$R3	777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
641	2380	0.112995	TCAGCCAATTGGGAGCTTGT	59.887	50.0	25.73	0.0	40.01	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2335	4252	0.469917	CACCCGGCAGACCTTCATAT	59.53	55.0	0.0	0.0	0.0	1.78	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	9.449719	CCATTAATGTGTTTTCCTAAGTCTAGT	57.550	33.333	14.25	0.00	0.00	2.57
229	231	9.665719	TCATAAAATACATCTATGTGTGTGTGT	57.334	29.630	5.85	0.00	41.89	3.72
230	232	9.706846	CATAAAATACATCTATGTGTGTGTGTG	57.293	33.333	5.85	0.00	41.89	3.82
231	233	7.744087	AAAATACATCTATGTGTGTGTGTGT	57.256	32.000	5.85	0.00	41.89	3.72
232	234	6.726258	AATACATCTATGTGTGTGTGTGTG	57.274	37.500	5.85	0.00	41.89	3.82
233	235	4.071961	ACATCTATGTGTGTGTGTGTGT	57.928	40.909	0.00	0.00	40.03	3.72
307	311	5.941948	AAGTAGATTTCGTCAAAACAGGG	57.058	39.130	0.00	0.00	0.00	4.45
308	312	3.751698	AGTAGATTTCGTCAAAACAGGGC	59.248	43.478	0.00	0.00	0.00	5.19
309	313	2.863809	AGATTTCGTCAAAACAGGGCT	58.136	42.857	0.00	0.00	0.00	5.19
310	314	4.015872	AGATTTCGTCAAAACAGGGCTA	57.984	40.909	0.00	0.00	0.00	3.93
311	315	4.003648	AGATTTCGTCAAAACAGGGCTAG	58.996	43.478	0.00	0.00	0.00	3.42
312	316	1.519408	TTCGTCAAAACAGGGCTAGC	58.481	50.000	6.04	6.04	0.00	3.42
313	317	0.685097	TCGTCAAAACAGGGCTAGCT	59.315	50.000	15.72	0.00	0.00	3.32
314	318	0.798776	CGTCAAAACAGGGCTAGCTG	59.201	55.000	15.72	8.63	0.00	4.24
360	435	1.081892	CTGCCATTGTCGTGAAGGAG	58.918	55.000	0.00	0.00	0.00	3.69
364	444	2.154462	CCATTGTCGTGAAGGAGCTTT	58.846	47.619	0.00	0.00	0.00	3.51
365	445	3.334691	CCATTGTCGTGAAGGAGCTTTA	58.665	45.455	0.00	0.00	0.00	1.85
366	446	3.941483	CCATTGTCGTGAAGGAGCTTTAT	59.059	43.478	0.00	0.00	0.00	1.40
367	447	4.396166	CCATTGTCGTGAAGGAGCTTTATT	59.604	41.667	0.00	0.00	0.00	1.40
470	554	4.635765	ACGATGATGTAATGTGGTCCTTTG	59.364	41.667	0.00	0.00	0.00	2.77
472	556	5.123820	CGATGATGTAATGTGGTCCTTTGTT	59.876	40.000	0.00	0.00	0.00	2.83
475	559	5.473162	TGATGTAATGTGGTCCTTTGTTCTG	59.527	40.000	0.00	0.00	0.00	3.02
634	2373	0.826062	GTGGGATTCAGCCAATTGGG	59.174	55.000	25.73	10.40	40.85	4.12
641	2380	0.112995	TCAGCCAATTGGGAGCTTGT	59.887	50.000	25.73	0.00	40.01	3.16
716	2456	2.238942	TGCGGCTGTATCATTCGATT	57.761	45.000	0.00	0.00	32.73	3.34
720	2460	3.493129	GCGGCTGTATCATTCGATTTACA	59.507	43.478	0.00	0.00	32.73	2.41
785	2560	7.662604	TTTTAGGGAAAAGATGTTCTACGTC	57.337	36.000	0.00	0.00	34.40	4.34
786	2561	6.600882	TTAGGGAAAAGATGTTCTACGTCT	57.399	37.500	0.00	0.00	45.78	4.18
853	2632	0.179067	AGGACGCGTGAAAAGGTCAA	60.179	50.000	20.70	0.00	38.23	3.18
854	2633	0.658897	GGACGCGTGAAAAGGTCAAA	59.341	50.000	20.70	0.00	38.23	2.69
855	2634	1.333791	GGACGCGTGAAAAGGTCAAAG	60.334	52.381	20.70	0.00	38.23	2.77
856	2635	1.595794	GACGCGTGAAAAGGTCAAAGA	59.404	47.619	20.70	0.00	38.23	2.52
966	2753	4.207165	GCATATTTCCACCTACCACACAT	58.793	43.478	0.00	0.00	0.00	3.21
987	2774	2.174639	TGTTTCATCAACTGACCTGGGT	59.825	45.455	0.00	0.00	36.21	4.51
1076	2867	0.320683	TGAGGATCAACACAGCACCG	60.321	55.000	0.00	0.00	45.97	4.94
1187	2979	2.252072	GATGGCCGTCCTAAGCACCA	62.252	60.000	14.58	0.00	0.00	4.17
1239	3031	4.308458	CGGTGCGTGGGACCTCAA	62.308	66.667	4.79	0.00	0.00	3.02
1322	3114	3.897681	TACTCCCCTCAGGCGCACA	62.898	63.158	10.83	0.00	34.51	4.57
1357	3149	1.226323	CAAGGCCGACTACGACTCG	60.226	63.158	0.00	0.00	42.66	4.18
1393	3185	1.207089	CCTATTGCGACCCTCAACTCA	59.793	52.381	0.00	0.00	0.00	3.41
1491	3283	2.196749	CATGAAGGTCAAGATCGACGG	58.803	52.381	0.00	0.00	36.73	4.79
1510	3302	4.154347	GTGCCTGGCTCCTCCTCG	62.154	72.222	21.03	0.00	35.26	4.63
1660	3457	5.201713	TGGCTTGAGTACATCTGTATAGC	57.798	43.478	0.00	0.00	32.54	2.97
1662	3459	4.561105	GCTTGAGTACATCTGTATAGCCC	58.439	47.826	0.00	0.00	32.54	5.19
1665	3462	3.895656	TGAGTACATCTGTATAGCCCCAC	59.104	47.826	0.00	0.00	32.54	4.61
1672	3469	1.343142	CTGTATAGCCCCACGCACATA	59.657	52.381	0.00	0.00	41.38	2.29
1673	3470	1.069513	TGTATAGCCCCACGCACATAC	59.930	52.381	0.00	0.00	41.38	2.39
1674	3471	0.682852	TATAGCCCCACGCACATACC	59.317	55.000	0.00	0.00	41.38	2.73
1677	3474	1.222387	GCCCCACGCACATACCTAA	59.778	57.895	0.00	0.00	37.47	2.69
1863	3661	4.822896	AGGTGCGTTTTGGTTGATTAGTAA	59.177	37.500	0.00	0.00	0.00	2.24
1864	3662	5.475564	AGGTGCGTTTTGGTTGATTAGTAAT	59.524	36.000	0.00	0.00	0.00	1.89
1865	3663	6.655848	AGGTGCGTTTTGGTTGATTAGTAATA	59.344	34.615	0.00	0.00	0.00	0.98
1866	3664	6.744082	GGTGCGTTTTGGTTGATTAGTAATAC	59.256	38.462	0.00	0.00	0.00	1.89
1869	3667	6.964934	GCGTTTTGGTTGATTAGTAATACCAG	59.035	38.462	14.41	7.24	39.80	4.00
1875	3673	9.537192	TTGGTTGATTAGTAATACCAGTAATCG	57.463	33.333	14.41	0.00	41.05	3.34
1881	3679	9.322776	GATTAGTAATACCAGTAATCGTGTACG	57.677	37.037	0.00	0.00	33.41	3.67
1904	3705	5.742453	CGTGCACGTCTAGTTTGATAGTAAT	59.258	40.000	30.50	0.00	34.11	1.89
2065	3872	2.031683	GTGACGTTGCATATAGGTTGCC	59.968	50.000	0.00	0.00	39.39	4.52
2210	4126	6.753744	TGACTGATGATCTATTTCGTTGTCTG	59.246	38.462	0.00	0.00	0.00	3.51
2269	4185	6.024049	GTGTGTTGCTAGCAATCAGTTAATC	58.976	40.000	31.46	16.20	38.28	1.75
2383	4301	6.964464	TCTATTAGTCTTCTCTCTCCAGTGT	58.036	40.000	0.00	0.00	0.00	3.55
2474	4402	5.660629	TTTTCTGAGCATGCAATTTGTTG	57.339	34.783	21.98	1.03	0.00	3.33
2481	4409	4.695396	AGCATGCAATTTGTTGAAGTTGA	58.305	34.783	21.98	0.00	0.00	3.18
2565	4496	5.887214	ATCCCATAAAAATTACTTGGGCC	57.113	39.130	0.00	0.00	45.53	5.80
2582	4513	6.152831	ACTTGGGCCTGTTATATTTCTCAAAC	59.847	38.462	4.53	0.00	0.00	2.93
2585	4516	7.582719	TGGGCCTGTTATATTTCTCAAACTAT	58.417	34.615	4.53	0.00	0.00	2.12
2663	4596	9.774413	CTTTCTAGAAAGGGAAAACACTAGTTA	57.226	33.333	29.99	0.00	42.96	2.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	5.852827	AGGAAAACACATTAATGGTTGTGG	58.147	37.500	19.37	4.59	45.88	4.17
1	2	8.141268	ACTTAGGAAAACACATTAATGGTTGTG	58.859	33.333	19.37	12.17	46.76	3.33
2	3	8.245195	ACTTAGGAAAACACATTAATGGTTGT	57.755	30.769	19.37	14.32	27.24	3.32
3	4	8.576442	AGACTTAGGAAAACACATTAATGGTTG	58.424	33.333	19.37	11.72	27.24	3.77
4	5	8.706322	AGACTTAGGAAAACACATTAATGGTT	57.294	30.769	19.37	15.95	0.00	3.67
5	6	9.449719	CTAGACTTAGGAAAACACATTAATGGT	57.550	33.333	19.37	11.28	0.00	3.55
6	7	9.449719	ACTAGACTTAGGAAAACACATTAATGG	57.550	33.333	19.37	10.68	0.00	3.16
229	231	3.523087	ATACACACGCGGGCACACA	62.523	57.895	9.12	0.00	0.00	3.72
230	232	2.740826	ATACACACGCGGGCACAC	60.741	61.111	9.12	0.00	0.00	3.82
231	233	2.740440	CATACACACGCGGGCACA	60.740	61.111	9.12	0.00	0.00	4.57
232	234	2.740826	ACATACACACGCGGGCAC	60.741	61.111	9.12	0.00	0.00	5.01
233	235	2.717139	TTCACATACACACGCGGGCA	62.717	55.000	9.12	0.00	0.00	5.36
307	311	1.012841	GTTCAGTCCATGCAGCTAGC	58.987	55.000	6.62	6.62	45.96	3.42
308	312	2.005451	GTGTTCAGTCCATGCAGCTAG	58.995	52.381	0.00	0.00	0.00	3.42
309	313	1.672737	CGTGTTCAGTCCATGCAGCTA	60.673	52.381	0.00	0.00	0.00	3.32
310	314	0.952497	CGTGTTCAGTCCATGCAGCT	60.952	55.000	0.00	0.00	0.00	4.24
311	315	0.950555	TCGTGTTCAGTCCATGCAGC	60.951	55.000	0.00	0.00	0.00	5.25
312	316	1.511850	TTCGTGTTCAGTCCATGCAG	58.488	50.000	0.00	0.00	0.00	4.41
313	317	1.960417	TTTCGTGTTCAGTCCATGCA	58.040	45.000	0.00	0.00	0.00	3.96
314	318	2.032799	TGTTTTCGTGTTCAGTCCATGC	59.967	45.455	0.00	0.00	0.00	4.06
470	554	6.683974	TTCAGCCTATGAATTAAGCAGAAC	57.316	37.500	0.00	0.00	43.09	3.01
472	556	6.858124	AGCTTTCAGCCTATGAATTAAGCAGA	60.858	38.462	12.66	0.00	45.59	4.26
634	2373	8.554835	ACTTTCTCCTCTAAAATTACAAGCTC	57.445	34.615	0.00	0.00	0.00	4.09
720	2460	9.730705	TCTTCACAATTCACAAATCTTCTAGAT	57.269	29.630	0.00	0.00	36.28	1.98
760	2535	7.935210	AGACGTAGAACATCTTTTCCCTAAAAA	59.065	33.333	0.00	0.00	34.26	1.94
762	2537	7.001099	AGACGTAGAACATCTTTTCCCTAAA	57.999	36.000	0.00	0.00	0.00	1.85
763	2538	6.600882	AGACGTAGAACATCTTTTCCCTAA	57.399	37.500	0.00	0.00	0.00	2.69
764	2539	6.014840	ACAAGACGTAGAACATCTTTTCCCTA	60.015	38.462	0.00	0.00	30.17	3.53
765	2540	5.221661	ACAAGACGTAGAACATCTTTTCCCT	60.222	40.000	0.00	0.00	30.17	4.20
766	2541	4.995487	ACAAGACGTAGAACATCTTTTCCC	59.005	41.667	0.00	0.00	30.17	3.97
779	2554	2.031437	GCGGTCTACCTACAAGACGTAG	59.969	54.545	0.00	0.00	46.27	3.51
780	2555	2.009774	GCGGTCTACCTACAAGACGTA	58.990	52.381	0.00	0.00	43.55	3.57
781	2556	0.807496	GCGGTCTACCTACAAGACGT	59.193	55.000	0.00	0.00	43.55	4.34
782	2557	0.247974	CGCGGTCTACCTACAAGACG	60.248	60.000	0.00	0.00	43.55	4.18
783	2558	0.807496	ACGCGGTCTACCTACAAGAC	59.193	55.000	12.47	0.00	42.19	3.01
784	2559	1.089920	GACGCGGTCTACCTACAAGA	58.910	55.000	12.47	0.00	0.00	3.02
785	2560	0.247974	CGACGCGGTCTACCTACAAG	60.248	60.000	12.47	0.00	0.00	3.16
786	2561	0.673333	TCGACGCGGTCTACCTACAA	60.673	55.000	12.47	0.00	0.00	2.41
787	2562	0.462581	ATCGACGCGGTCTACCTACA	60.463	55.000	12.47	0.00	0.00	2.74
788	2563	1.502231	TATCGACGCGGTCTACCTAC	58.498	55.000	12.47	0.00	0.00	3.18
789	2564	2.462456	ATATCGACGCGGTCTACCTA	57.538	50.000	12.47	0.00	0.00	3.08
790	2565	1.266175	CAATATCGACGCGGTCTACCT	59.734	52.381	12.47	0.00	0.00	3.08
791	2566	1.665161	CCAATATCGACGCGGTCTACC	60.665	57.143	12.47	0.00	0.00	3.18
853	2632	2.456287	GAAGACCGGGCTGTGCTCTT	62.456	60.000	12.91	5.59	0.00	2.85
854	2633	2.925170	AAGACCGGGCTGTGCTCT	60.925	61.111	12.91	0.00	0.00	4.09
855	2634	2.435059	GAAGACCGGGCTGTGCTC	60.435	66.667	12.91	0.00	0.00	4.26
856	2635	3.241530	TGAAGACCGGGCTGTGCT	61.242	61.111	12.91	0.00	0.00	4.40
966	2753	2.174639	ACCCAGGTCAGTTGATGAAACA	59.825	45.455	0.00	0.00	40.43	2.83
1076	2867	0.615850	AGCAGAGGAAGTGTAAGCCC	59.384	55.000	0.00	0.00	0.00	5.19
1083	2874	1.065401	CGAGAGCTAGCAGAGGAAGTG	59.935	57.143	18.83	0.00	0.00	3.16
1086	2878	1.474478	CAACGAGAGCTAGCAGAGGAA	59.526	52.381	18.83	0.00	0.00	3.36
1200	2992	2.474712	GCTCGCCAACGTTGTAGC	59.525	61.111	25.63	24.21	41.18	3.58
1225	3017	2.110213	GTGTTGAGGTCCCACGCA	59.890	61.111	0.00	0.00	0.00	5.24
1239	3031	1.070786	CAGGTGCCGTAGTTGGTGT	59.929	57.895	0.00	0.00	0.00	4.16
1322	3114	2.767505	CTTGCTAACCTCAAGGACGTT	58.232	47.619	2.30	0.00	37.77	3.99
1357	3149	2.725203	TAGGGTTGACGGTGCTGCAC	62.725	60.000	24.02	24.02	0.00	4.57
1422	3214	0.037590	AATGAAGTAGCGGGTGCCAA	59.962	50.000	0.00	0.00	44.31	4.52
1531	3326	2.526126	TTGCTTGCATTGGGGCCA	60.526	55.556	4.39	0.00	0.00	5.36
1607	3402	2.751436	GGCAAGCAGGATGGCGAA	60.751	61.111	0.00	0.00	39.27	4.70
1660	3457	2.341846	AATTAGGTATGTGCGTGGGG	57.658	50.000	0.00	0.00	0.00	4.96
1662	3459	7.485418	TTACATAAATTAGGTATGTGCGTGG	57.515	36.000	10.30	0.00	41.26	4.94
1665	3462	8.822855	TGACTTTACATAAATTAGGTATGTGCG	58.177	33.333	10.30	3.42	41.26	5.34
1730	3527	7.596749	AACTCAAAGTCGTGTATCCAATTAG	57.403	36.000	0.00	0.00	0.00	1.73
1741	3538	8.835467	TGAATTAAAAGAAACTCAAAGTCGTG	57.165	30.769	0.00	0.00	0.00	4.35
1863	3661	3.129113	TGCACGTACACGATTACTGGTAT	59.871	43.478	9.04	0.00	43.02	2.73
1864	3662	2.487372	TGCACGTACACGATTACTGGTA	59.513	45.455	9.04	0.00	43.02	3.25
1865	3663	1.270274	TGCACGTACACGATTACTGGT	59.730	47.619	9.04	0.00	43.02	4.00
1866	3664	1.652124	GTGCACGTACACGATTACTGG	59.348	52.381	9.04	0.00	43.02	4.00
1881	3679	8.798748	ATATTACTATCAAACTAGACGTGCAC	57.201	34.615	6.82	6.82	0.00	4.57
2269	4185	2.226200	TCACACGCCAATGAGTCAATTG	59.774	45.455	0.00	0.00	37.30	2.32
2335	4252	0.469917	CACCCGGCAGACCTTCATAT	59.530	55.000	0.00	0.00	0.00	1.78
2644	4577	8.343366	CACTTTCTAACTAGTGTTTTCCCTTTC	58.657	37.037	0.00	0.00	37.56	2.62
2663	4596	1.485066	ACTCCACGGTGTTCACTTTCT	59.515	47.619	7.45	0.00	0.00	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.