Multiple sequence alignment - TraesCS2D01G539600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G539600 chr2D 100.000 3367 0 0 1 3367 619871719 619868353 0.000000e+00 6218.0
1 TraesCS2D01G539600 chr2D 90.795 717 37 8 1446 2162 619848623 619847936 0.000000e+00 931.0
2 TraesCS2D01G539600 chr2D 88.365 636 36 14 2158 2764 619832809 619832183 0.000000e+00 730.0
3 TraesCS2D01G539600 chr2D 84.282 738 43 28 708 1436 619850676 619850003 0.000000e+00 652.0
4 TraesCS2D01G539600 chr2D 94.037 218 12 1 188 404 526224546 526224763 2.500000e-86 329.0
5 TraesCS2D01G539600 chr2B 85.599 2611 209 89 451 2963 759525304 759522763 0.000000e+00 2584.0
6 TraesCS2D01G539600 chr2B 95.536 224 7 2 188 410 234630804 234630583 4.130000e-94 355.0
7 TraesCS2D01G539600 chr2B 95.392 217 8 1 188 402 526839004 526839220 8.940000e-91 344.0
8 TraesCS2D01G539600 chr2B 94.064 219 11 2 188 404 373185547 373185765 6.960000e-87 331.0
9 TraesCS2D01G539600 chr2B 86.957 207 12 4 3171 3367 759522585 759522384 5.660000e-53 219.0
10 TraesCS2D01G539600 chr2B 85.714 63 7 2 3042 3103 759522729 759522668 7.800000e-07 65.8
11 TraesCS2D01G539600 chr2A 90.863 1773 107 23 1026 2762 751494349 751492596 0.000000e+00 2326.0
12 TraesCS2D01G539600 chr2A 88.980 245 19 5 707 945 751494633 751494391 2.540000e-76 296.0
13 TraesCS2D01G539600 chr2A 79.336 271 23 18 3121 3365 751492343 751492080 3.480000e-35 159.0
14 TraesCS2D01G539600 chr2A 82.222 180 12 7 484 643 751494845 751494666 1.630000e-28 137.0
15 TraesCS2D01G539600 chr2A 92.308 91 5 2 87 175 751494983 751494893 9.810000e-26 128.0
16 TraesCS2D01G539600 chr5D 95.392 217 9 1 188 403 546011644 546011428 8.940000e-91 344.0
17 TraesCS2D01G539600 chr1D 94.977 219 10 1 188 405 457209459 457209241 3.220000e-90 342.0
18 TraesCS2D01G539600 chr1B 94.495 218 11 1 188 404 610008717 610008934 5.380000e-88 335.0
19 TraesCS2D01G539600 chr7D 94.064 219 12 1 188 405 433726633 433726851 6.960000e-87 331.0
20 TraesCS2D01G539600 chr7B 93.665 221 12 2 189 407 367495954 367495734 2.500000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G539600 chr2D 619868353 619871719 3366 True 6218.000000 6218 100.0000 1 3367 1 chr2D.!!$R2 3366
1 TraesCS2D01G539600 chr2D 619847936 619850676 2740 True 791.500000 931 87.5385 708 2162 2 chr2D.!!$R3 1454
2 TraesCS2D01G539600 chr2D 619832183 619832809 626 True 730.000000 730 88.3650 2158 2764 1 chr2D.!!$R1 606
3 TraesCS2D01G539600 chr2B 759522384 759525304 2920 True 956.266667 2584 86.0900 451 3367 3 chr2B.!!$R2 2916
4 TraesCS2D01G539600 chr2A 751492080 751494983 2903 True 609.200000 2326 86.7418 87 3365 5 chr2A.!!$R1 3278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 235 0.102481 CGGTTATCAGGTGAGACCCG 59.898 60.0 0.0 0.0 39.75 5.28 F
1213 1285 0.031585 CTTCCAGGTTCGTGTCGTCA 59.968 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 3420 0.040058 TTGAGCCCCATGAACTGCAT 59.96 50.0 0.0 0.0 37.85 3.96 R
3121 4702 0.110486 AGTCATGCCCTTTCACGGTT 59.89 50.0 0.0 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.588497 GAGGCTATCCATTACCATTTTCTTT 57.412 36.000 0.00 0.00 33.74 2.52
31 32 8.691661 GAGGCTATCCATTACCATTTTCTTTA 57.308 34.615 0.00 0.00 33.74 1.85
32 33 9.301897 GAGGCTATCCATTACCATTTTCTTTAT 57.698 33.333 0.00 0.00 33.74 1.40
33 34 9.301897 AGGCTATCCATTACCATTTTCTTTATC 57.698 33.333 0.00 0.00 33.74 1.75
34 35 9.077885 GGCTATCCATTACCATTTTCTTTATCA 57.922 33.333 0.00 0.00 0.00 2.15
79 80 8.565896 TTTTCATGTCACATAAGATAACAGCT 57.434 30.769 0.00 0.00 0.00 4.24
80 81 9.665719 TTTTCATGTCACATAAGATAACAGCTA 57.334 29.630 0.00 0.00 0.00 3.32
81 82 8.877808 TTCATGTCACATAAGATAACAGCTAG 57.122 34.615 0.00 0.00 0.00 3.42
82 83 6.925718 TCATGTCACATAAGATAACAGCTAGC 59.074 38.462 6.62 6.62 0.00 3.42
83 84 6.220726 TGTCACATAAGATAACAGCTAGCA 57.779 37.500 18.83 0.00 0.00 3.49
84 85 6.820335 TGTCACATAAGATAACAGCTAGCAT 58.180 36.000 18.83 0.38 0.00 3.79
85 86 6.703165 TGTCACATAAGATAACAGCTAGCATG 59.297 38.462 18.83 14.32 0.00 4.06
133 136 1.512926 AACAGAAATCGCTGCTTCGT 58.487 45.000 0.00 0.00 39.51 3.85
173 176 3.905249 GGAAATCCCTCGTGCACC 58.095 61.111 12.15 0.00 0.00 5.01
174 177 2.106683 GGAAATCCCTCGTGCACCG 61.107 63.158 12.15 6.81 38.13 4.94
175 178 1.079405 GAAATCCCTCGTGCACCGA 60.079 57.895 12.15 11.00 45.00 4.69
182 185 4.859400 TCGTGCACCGAGGAAAAA 57.141 50.000 12.15 0.00 41.60 1.94
217 220 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
218 221 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
219 222 2.233305 AGACCAGGTCTCACGGTTAT 57.767 50.000 17.31 0.00 38.71 1.89
220 223 2.100989 AGACCAGGTCTCACGGTTATC 58.899 52.381 17.31 0.00 38.71 1.75
221 224 1.822990 GACCAGGTCTCACGGTTATCA 59.177 52.381 12.94 0.00 31.63 2.15
222 225 1.825474 ACCAGGTCTCACGGTTATCAG 59.175 52.381 0.00 0.00 0.00 2.90
223 226 1.137086 CCAGGTCTCACGGTTATCAGG 59.863 57.143 0.00 0.00 0.00 3.86
224 227 1.825474 CAGGTCTCACGGTTATCAGGT 59.175 52.381 0.00 0.00 0.00 4.00
225 228 1.825474 AGGTCTCACGGTTATCAGGTG 59.175 52.381 0.00 0.00 0.00 4.00
226 229 1.822990 GGTCTCACGGTTATCAGGTGA 59.177 52.381 0.00 0.00 38.29 4.02
230 233 1.822990 TCACGGTTATCAGGTGAGACC 59.177 52.381 5.59 5.59 35.89 3.85
231 234 1.134788 CACGGTTATCAGGTGAGACCC 60.135 57.143 8.83 0.00 39.75 4.46
232 235 0.102481 CGGTTATCAGGTGAGACCCG 59.898 60.000 0.00 0.00 39.75 5.28
233 236 0.179081 GGTTATCAGGTGAGACCCGC 60.179 60.000 4.65 0.00 39.75 6.13
234 237 0.179081 GTTATCAGGTGAGACCCGCC 60.179 60.000 0.00 0.00 45.81 6.13
235 238 1.335132 TTATCAGGTGAGACCCGCCC 61.335 60.000 0.00 0.00 46.65 6.13
236 239 2.238319 TATCAGGTGAGACCCGCCCT 62.238 60.000 0.00 0.00 46.65 5.19
237 240 4.087892 CAGGTGAGACCCGCCCTG 62.088 72.222 0.00 0.00 46.65 4.45
238 241 4.316823 AGGTGAGACCCGCCCTGA 62.317 66.667 0.00 0.00 46.65 3.86
239 242 3.083997 GGTGAGACCCGCCCTGAT 61.084 66.667 0.00 0.00 39.55 2.90
240 243 2.187946 GTGAGACCCGCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
241 244 3.083349 TGAGACCCGCCCTGATGG 61.083 66.667 0.00 0.00 37.09 3.51
242 245 2.764128 GAGACCCGCCCTGATGGA 60.764 66.667 0.00 0.00 35.39 3.41
243 246 2.040464 AGACCCGCCCTGATGGAT 60.040 61.111 0.00 0.00 35.39 3.41
244 247 2.111878 GACCCGCCCTGATGGATG 59.888 66.667 0.00 0.00 35.39 3.51
245 248 2.366837 ACCCGCCCTGATGGATGA 60.367 61.111 0.00 0.00 35.39 2.92
246 249 2.111878 CCCGCCCTGATGGATGAC 59.888 66.667 0.00 0.00 35.39 3.06
247 250 2.745308 CCCGCCCTGATGGATGACA 61.745 63.158 0.00 0.00 35.39 3.58
248 251 1.524621 CCGCCCTGATGGATGACAC 60.525 63.158 0.00 0.00 35.39 3.67
249 252 1.884464 CGCCCTGATGGATGACACG 60.884 63.158 0.00 0.00 35.39 4.49
250 253 1.221840 GCCCTGATGGATGACACGT 59.778 57.895 0.00 0.00 35.39 4.49
251 254 1.091771 GCCCTGATGGATGACACGTG 61.092 60.000 15.48 15.48 35.39 4.49
252 255 0.536724 CCCTGATGGATGACACGTGA 59.463 55.000 25.01 0.00 35.39 4.35
253 256 1.645034 CCTGATGGATGACACGTGAC 58.355 55.000 25.01 17.68 34.57 3.67
254 257 1.066929 CCTGATGGATGACACGTGACA 60.067 52.381 25.01 23.44 34.57 3.58
255 258 2.419159 CCTGATGGATGACACGTGACAT 60.419 50.000 28.93 28.93 34.57 3.06
256 259 3.264947 CTGATGGATGACACGTGACATT 58.735 45.455 29.08 16.96 31.08 2.71
257 260 3.261580 TGATGGATGACACGTGACATTC 58.738 45.455 29.08 27.59 31.08 2.67
258 261 2.829741 TGGATGACACGTGACATTCA 57.170 45.000 29.97 29.97 34.27 2.57
259 262 2.412870 TGGATGACACGTGACATTCAC 58.587 47.619 29.97 22.99 43.65 3.18
271 274 5.565723 GTGACATTCACAAATCACAAAGC 57.434 39.130 1.34 0.00 46.22 3.51
272 275 5.042593 GTGACATTCACAAATCACAAAGCA 58.957 37.500 1.34 0.00 46.22 3.91
273 276 5.693104 GTGACATTCACAAATCACAAAGCAT 59.307 36.000 1.34 0.00 46.22 3.79
274 277 5.921976 TGACATTCACAAATCACAAAGCATC 59.078 36.000 0.00 0.00 0.00 3.91
275 278 6.092955 ACATTCACAAATCACAAAGCATCT 57.907 33.333 0.00 0.00 0.00 2.90
276 279 7.040548 TGACATTCACAAATCACAAAGCATCTA 60.041 33.333 0.00 0.00 0.00 1.98
277 280 7.660112 ACATTCACAAATCACAAAGCATCTAA 58.340 30.769 0.00 0.00 0.00 2.10
278 281 8.308931 ACATTCACAAATCACAAAGCATCTAAT 58.691 29.630 0.00 0.00 0.00 1.73
279 282 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
280 283 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
281 284 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
282 285 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
283 286 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
284 287 7.066766 ACAAATCACAAAGCATCTAATCTCTCC 59.933 37.037 0.00 0.00 0.00 3.71
285 288 5.028549 TCACAAAGCATCTAATCTCTCCC 57.971 43.478 0.00 0.00 0.00 4.30
286 289 4.133078 CACAAAGCATCTAATCTCTCCCC 58.867 47.826 0.00 0.00 0.00 4.81
287 290 3.137360 ACAAAGCATCTAATCTCTCCCCC 59.863 47.826 0.00 0.00 0.00 5.40
306 309 3.271250 CTGATTTCAGGTGGGGGTG 57.729 57.895 0.00 0.00 40.20 4.61
307 310 0.323725 CTGATTTCAGGTGGGGGTGG 60.324 60.000 0.00 0.00 40.20 4.61
308 311 1.000359 GATTTCAGGTGGGGGTGGG 60.000 63.158 0.00 0.00 0.00 4.61
309 312 2.514516 GATTTCAGGTGGGGGTGGGG 62.515 65.000 0.00 0.00 0.00 4.96
310 313 4.542627 TTCAGGTGGGGGTGGGGT 62.543 66.667 0.00 0.00 0.00 4.95
311 314 2.656269 TTTCAGGTGGGGGTGGGGTA 62.656 60.000 0.00 0.00 0.00 3.69
312 315 3.015145 CAGGTGGGGGTGGGGTAG 61.015 72.222 0.00 0.00 0.00 3.18
313 316 3.213245 AGGTGGGGGTGGGGTAGA 61.213 66.667 0.00 0.00 0.00 2.59
314 317 2.043941 GGTGGGGGTGGGGTAGAT 59.956 66.667 0.00 0.00 0.00 1.98
315 318 2.383601 GGTGGGGGTGGGGTAGATG 61.384 68.421 0.00 0.00 0.00 2.90
316 319 2.694616 TGGGGGTGGGGTAGATGC 60.695 66.667 0.00 0.00 0.00 3.91
317 320 2.368329 GGGGGTGGGGTAGATGCT 60.368 66.667 0.00 0.00 0.00 3.79
318 321 2.006991 GGGGGTGGGGTAGATGCTT 61.007 63.158 0.00 0.00 0.00 3.91
319 322 1.580994 GGGGGTGGGGTAGATGCTTT 61.581 60.000 0.00 0.00 0.00 3.51
320 323 0.395724 GGGGTGGGGTAGATGCTTTG 60.396 60.000 0.00 0.00 0.00 2.77
321 324 0.331616 GGGTGGGGTAGATGCTTTGT 59.668 55.000 0.00 0.00 0.00 2.83
322 325 1.463674 GGTGGGGTAGATGCTTTGTG 58.536 55.000 0.00 0.00 0.00 3.33
323 326 1.004277 GGTGGGGTAGATGCTTTGTGA 59.996 52.381 0.00 0.00 0.00 3.58
324 327 2.357154 GGTGGGGTAGATGCTTTGTGAT 60.357 50.000 0.00 0.00 0.00 3.06
325 328 3.356290 GTGGGGTAGATGCTTTGTGATT 58.644 45.455 0.00 0.00 0.00 2.57
326 329 3.763897 GTGGGGTAGATGCTTTGTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
327 330 3.763360 TGGGGTAGATGCTTTGTGATTTG 59.237 43.478 0.00 0.00 0.00 2.32
328 331 3.763897 GGGGTAGATGCTTTGTGATTTGT 59.236 43.478 0.00 0.00 0.00 2.83
329 332 4.380867 GGGGTAGATGCTTTGTGATTTGTG 60.381 45.833 0.00 0.00 0.00 3.33
330 333 4.458989 GGGTAGATGCTTTGTGATTTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
331 334 5.048083 GGGTAGATGCTTTGTGATTTGTGAA 60.048 40.000 0.00 0.00 0.00 3.18
332 335 6.350445 GGGTAGATGCTTTGTGATTTGTGAAT 60.350 38.462 0.00 0.00 0.00 2.57
333 336 6.529125 GGTAGATGCTTTGTGATTTGTGAATG 59.471 38.462 0.00 0.00 0.00 2.67
334 337 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
335 338 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
336 339 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
337 340 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
346 349 2.857592 GTGAATGCCACATGTCATCC 57.142 50.000 0.00 0.00 45.03 3.51
347 350 2.093890 GTGAATGCCACATGTCATCCA 58.906 47.619 0.00 0.00 45.03 3.41
348 351 2.691526 GTGAATGCCACATGTCATCCAT 59.308 45.455 0.00 0.00 45.03 3.41
349 352 2.953648 TGAATGCCACATGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
350 353 2.740506 ATGCCACATGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
351 354 2.510928 TGCCACATGTCATCCATCAA 57.489 45.000 0.00 0.00 0.00 2.57
352 355 2.371306 TGCCACATGTCATCCATCAAG 58.629 47.619 0.00 0.00 0.00 3.02
353 356 2.026075 TGCCACATGTCATCCATCAAGA 60.026 45.455 0.00 0.00 0.00 3.02
354 357 3.220110 GCCACATGTCATCCATCAAGAT 58.780 45.455 0.00 0.00 0.00 2.40
355 358 3.004419 GCCACATGTCATCCATCAAGATG 59.996 47.826 0.00 3.07 44.21 2.90
366 369 2.915349 CATCAAGATGGGTCTCACCTG 58.085 52.381 2.09 0.00 38.64 4.00
367 370 0.615331 TCAAGATGGGTCTCACCTGC 59.385 55.000 0.00 0.00 38.64 4.85
368 371 0.617413 CAAGATGGGTCTCACCTGCT 59.383 55.000 0.00 0.00 38.64 4.24
369 372 1.833630 CAAGATGGGTCTCACCTGCTA 59.166 52.381 0.00 0.00 38.64 3.49
370 373 2.237143 CAAGATGGGTCTCACCTGCTAA 59.763 50.000 0.00 0.00 38.64 3.09
371 374 1.834263 AGATGGGTCTCACCTGCTAAC 59.166 52.381 0.00 0.00 38.64 2.34
372 375 0.912486 ATGGGTCTCACCTGCTAACC 59.088 55.000 0.00 0.00 38.64 2.85
373 376 1.602771 GGGTCTCACCTGCTAACCC 59.397 63.158 0.00 0.00 42.62 4.11
374 377 2.372852 GGTCTCACCTGCTAACCCA 58.627 57.895 0.00 0.00 34.73 4.51
375 378 0.912486 GGTCTCACCTGCTAACCCAT 59.088 55.000 0.00 0.00 34.73 4.00
376 379 1.407437 GGTCTCACCTGCTAACCCATG 60.407 57.143 0.00 0.00 34.73 3.66
377 380 1.555075 GTCTCACCTGCTAACCCATGA 59.445 52.381 0.00 0.00 0.00 3.07
378 381 1.833630 TCTCACCTGCTAACCCATGAG 59.166 52.381 0.00 0.00 35.87 2.90
379 382 1.833630 CTCACCTGCTAACCCATGAGA 59.166 52.381 0.00 0.00 36.50 3.27
380 383 1.555075 TCACCTGCTAACCCATGAGAC 59.445 52.381 0.00 0.00 0.00 3.36
381 384 0.912486 ACCTGCTAACCCATGAGACC 59.088 55.000 0.00 0.00 0.00 3.85
382 385 1.207791 CCTGCTAACCCATGAGACCT 58.792 55.000 0.00 0.00 0.00 3.85
383 386 1.134280 CCTGCTAACCCATGAGACCTG 60.134 57.143 0.00 0.00 0.00 4.00
384 387 0.911769 TGCTAACCCATGAGACCTGG 59.088 55.000 0.00 0.00 0.00 4.45
385 388 0.912486 GCTAACCCATGAGACCTGGT 59.088 55.000 0.00 0.00 31.44 4.00
386 389 1.134371 GCTAACCCATGAGACCTGGTC 60.134 57.143 19.20 19.20 31.44 4.02
387 390 2.472029 CTAACCCATGAGACCTGGTCT 58.528 52.381 28.70 28.70 46.42 3.85
412 415 3.340034 AGAATTATTTTCCGTGCACCGA 58.660 40.909 12.15 7.64 39.56 4.69
435 438 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
438 441 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
439 442 2.652113 CCCTCCCTCCCTCCCTCTT 61.652 68.421 0.00 0.00 0.00 2.85
440 443 1.383803 CCTCCCTCCCTCCCTCTTG 60.384 68.421 0.00 0.00 0.00 3.02
442 445 3.093172 CCCTCCCTCCCTCTTGCC 61.093 72.222 0.00 0.00 0.00 4.52
443 446 2.285668 CCTCCCTCCCTCTTGCCA 60.286 66.667 0.00 0.00 0.00 4.92
444 447 2.674220 CCTCCCTCCCTCTTGCCAC 61.674 68.421 0.00 0.00 0.00 5.01
445 448 3.003173 TCCCTCCCTCTTGCCACG 61.003 66.667 0.00 0.00 0.00 4.94
446 449 4.785453 CCCTCCCTCTTGCCACGC 62.785 72.222 0.00 0.00 0.00 5.34
447 450 4.785453 CCTCCCTCTTGCCACGCC 62.785 72.222 0.00 0.00 0.00 5.68
448 451 4.785453 CTCCCTCTTGCCACGCCC 62.785 72.222 0.00 0.00 0.00 6.13
474 477 2.671682 GTTGAGCTCCTCCCCACC 59.328 66.667 12.15 0.00 0.00 4.61
476 479 4.741239 TGAGCTCCTCCCCACCCC 62.741 72.222 12.15 0.00 0.00 4.95
507 510 5.059404 AGAAAACAAGCATTATCCAACGG 57.941 39.130 0.00 0.00 0.00 4.44
552 566 2.814336 CAAAAGCCTACTTGGTCACTCC 59.186 50.000 0.00 0.00 35.85 3.85
653 688 4.125912 CGTACTCCTACGTAGTACATGC 57.874 50.000 20.73 6.62 46.32 4.06
654 689 3.059325 CGTACTCCTACGTAGTACATGCC 60.059 52.174 20.73 2.53 46.32 4.40
655 690 2.305009 ACTCCTACGTAGTACATGCCC 58.695 52.381 20.73 0.00 45.11 5.36
656 691 2.304092 CTCCTACGTAGTACATGCCCA 58.696 52.381 20.73 0.00 45.11 5.36
657 692 2.691526 CTCCTACGTAGTACATGCCCAA 59.308 50.000 20.73 0.00 45.11 4.12
658 693 2.428171 TCCTACGTAGTACATGCCCAAC 59.572 50.000 20.73 0.00 45.11 3.77
659 694 2.429610 CCTACGTAGTACATGCCCAACT 59.570 50.000 20.73 0.00 45.11 3.16
660 695 2.380084 ACGTAGTACATGCCCAACTG 57.620 50.000 0.38 0.00 41.94 3.16
728 763 3.710326 AAAGAAGTCCAAGCGGTTTTC 57.290 42.857 0.00 0.00 0.00 2.29
729 764 1.605753 AGAAGTCCAAGCGGTTTTCC 58.394 50.000 0.00 0.00 0.00 3.13
769 804 0.469917 CGTGCAGGGGATCTGGTATT 59.530 55.000 0.00 0.00 43.54 1.89
787 822 4.974721 CCTTGCTTGCCCGGTGGT 62.975 66.667 0.00 0.00 0.00 4.16
872 909 2.829003 TCCGCTCGCCGAGATTCT 60.829 61.111 20.05 0.00 40.02 2.40
953 1022 2.777094 AGAAGAAGAAGAGCCAGCAAC 58.223 47.619 0.00 0.00 0.00 4.17
979 1048 2.863401 CGATATCCGTCTGTGTTGGA 57.137 50.000 0.00 0.00 35.96 3.53
980 1049 2.460918 CGATATCCGTCTGTGTTGGAC 58.539 52.381 0.00 0.00 33.91 4.02
985 1054 3.712881 GTCTGTGTTGGACGCGCC 61.713 66.667 5.73 9.63 37.10 6.53
993 1062 4.063967 TGGACGCGCCAAGACGAT 62.064 61.111 17.94 0.00 45.87 3.73
1212 1284 1.282930 GCTTCCAGGTTCGTGTCGTC 61.283 60.000 0.00 0.00 0.00 4.20
1213 1285 0.031585 CTTCCAGGTTCGTGTCGTCA 59.968 55.000 0.00 0.00 0.00 4.35
1219 1293 3.314553 CAGGTTCGTGTCGTCATAGTTT 58.685 45.455 0.00 0.00 0.00 2.66
1235 1309 1.878734 AGTTTCTCTGCTTCTGCTTGC 59.121 47.619 0.00 0.00 40.48 4.01
1268 1365 1.943116 CTGCGTCCTCTGGTCCTCAG 61.943 65.000 0.00 0.00 44.68 3.35
1291 1402 4.363990 CGACACCTCCGCTGCACT 62.364 66.667 0.00 0.00 0.00 4.40
1407 1525 5.997385 AGTTAACTGTATCCAAAACAAGCG 58.003 37.500 7.48 0.00 0.00 4.68
1408 1526 5.761234 AGTTAACTGTATCCAAAACAAGCGA 59.239 36.000 7.48 0.00 0.00 4.93
1409 1527 4.483476 AACTGTATCCAAAACAAGCGAC 57.517 40.909 0.00 0.00 0.00 5.19
1410 1528 3.472652 ACTGTATCCAAAACAAGCGACA 58.527 40.909 0.00 0.00 0.00 4.35
1433 1551 9.435688 GACAGACAAACCATGCATATATATACA 57.564 33.333 0.00 0.00 0.00 2.29
1436 1554 9.658799 AGACAAACCATGCATATATATACAGAC 57.341 33.333 0.00 0.00 0.00 3.51
1437 1555 9.658799 GACAAACCATGCATATATATACAGACT 57.341 33.333 0.00 0.00 0.00 3.24
1633 3150 1.302285 CATCAGCAAGGCCAGGTCT 59.698 57.895 5.01 0.00 0.00 3.85
1693 3210 3.106609 TCCTGGCCAACCCAACCA 61.107 61.111 7.01 0.00 44.81 3.67
1765 3282 3.459227 TGAATCATCCCAGCTTATGACCA 59.541 43.478 5.52 4.96 35.06 4.02
1817 3335 0.309922 CGTACGCGGTGGAGATACAT 59.690 55.000 12.47 0.00 0.00 2.29
1819 3337 2.031769 CGTACGCGGTGGAGATACATAA 60.032 50.000 12.47 0.00 0.00 1.90
1820 3338 3.548616 CGTACGCGGTGGAGATACATAAA 60.549 47.826 12.47 0.00 0.00 1.40
1837 3355 4.083110 ACATAAACTGTCAATGCAGCTCAC 60.083 41.667 0.00 0.00 39.96 3.51
1838 3356 1.971481 AACTGTCAATGCAGCTCACA 58.029 45.000 0.00 0.00 39.96 3.58
1902 3420 2.038007 AGAAGCTCGGAGCAGGGA 59.962 61.111 29.88 0.00 45.56 4.20
1915 3433 1.389609 GCAGGGATGCAGTTCATGGG 61.390 60.000 0.00 0.00 35.05 4.00
2369 3912 3.551890 TCAAGATCGACAGCGCTTAATTC 59.448 43.478 7.50 1.12 37.46 2.17
2370 3913 2.474816 AGATCGACAGCGCTTAATTCC 58.525 47.619 7.50 0.00 37.46 3.01
2374 3917 2.094182 TCGACAGCGCTTAATTCCTTCT 60.094 45.455 7.50 0.00 37.46 2.85
2378 3921 2.012673 AGCGCTTAATTCCTTCTGCTG 58.987 47.619 2.64 0.00 0.00 4.41
2381 3924 2.357009 CGCTTAATTCCTTCTGCTGCAT 59.643 45.455 1.31 0.00 0.00 3.96
2389 3932 3.338249 TCCTTCTGCTGCATTAAGACAC 58.662 45.455 20.30 0.00 0.00 3.67
2392 3938 3.407424 TCTGCTGCATTAAGACACACT 57.593 42.857 1.31 0.00 0.00 3.55
2407 3953 4.281941 AGACACACTTAGCTGAATGAGACA 59.718 41.667 0.00 0.00 0.00 3.41
2413 3959 1.805869 AGCTGAATGAGACACTGCAC 58.194 50.000 0.00 0.00 0.00 4.57
2526 4077 7.392673 TCAGTACGAATAAGGGAGTATGGTATC 59.607 40.741 0.00 0.00 0.00 2.24
2669 4226 2.293399 CCAAGTTCTTCCGGTTCTTTGG 59.707 50.000 0.00 6.11 0.00 3.28
2670 4227 2.949644 CAAGTTCTTCCGGTTCTTTGGT 59.050 45.455 0.00 0.00 0.00 3.67
2671 4228 4.131596 CAAGTTCTTCCGGTTCTTTGGTA 58.868 43.478 0.00 0.00 0.00 3.25
2695 4258 4.901197 ACCTACATACACCATGTGTTGA 57.099 40.909 5.06 0.00 45.08 3.18
2717 4280 5.833131 TGATCAGTGCAGTCCTATATGTGTA 59.167 40.000 0.00 0.00 0.00 2.90
2769 4332 4.284829 TCTCATGGGATATATTGCGCAA 57.715 40.909 27.24 27.24 0.00 4.85
2770 4333 4.002982 TCTCATGGGATATATTGCGCAAC 58.997 43.478 27.64 12.34 0.00 4.17
2771 4334 2.741517 TCATGGGATATATTGCGCAACG 59.258 45.455 27.64 4.00 0.00 4.10
2772 4335 2.535012 TGGGATATATTGCGCAACGA 57.465 45.000 27.64 17.26 0.00 3.85
2773 4336 3.052455 TGGGATATATTGCGCAACGAT 57.948 42.857 27.64 22.87 0.00 3.73
2774 4337 4.195225 TGGGATATATTGCGCAACGATA 57.805 40.909 27.64 24.22 0.00 2.92
2775 4338 4.765273 TGGGATATATTGCGCAACGATAT 58.235 39.130 27.64 27.41 38.63 1.63
2776 4339 5.908341 TGGGATATATTGCGCAACGATATA 58.092 37.500 27.64 22.32 40.42 0.86
2777 4340 6.521162 TGGGATATATTGCGCAACGATATAT 58.479 36.000 27.64 25.62 45.37 0.86
2779 4342 8.145122 TGGGATATATTGCGCAACGATATATTA 58.855 33.333 27.64 11.73 43.83 0.98
2830 4396 4.651503 TGGTTTTCTTTATCTGTGCCCAAA 59.348 37.500 0.00 0.00 0.00 3.28
2882 4454 5.818678 AAGTGGTGTGTTCTGAATACCTA 57.181 39.130 13.65 2.29 32.68 3.08
2900 4472 5.886960 ACCTATTTCTTGTGCTTCACATC 57.113 39.130 0.11 0.00 44.16 3.06
2920 4492 7.552330 TCACATCGAAATTTATCATGTCCTTCA 59.448 33.333 0.00 0.00 0.00 3.02
2949 4521 0.394488 TTCGTGCAAGGTGGTTCCAA 60.394 50.000 0.00 0.00 39.02 3.53
2991 4563 9.120538 ACATTTGAACAACTAGTGTACATCTTT 57.879 29.630 0.00 0.00 40.60 2.52
3021 4593 7.949434 ACATAAATTAAGTAGTACTCCCTCCG 58.051 38.462 2.58 0.00 0.00 4.63
3022 4594 7.562821 ACATAAATTAAGTAGTACTCCCTCCGT 59.437 37.037 2.58 0.00 0.00 4.69
3023 4595 6.462552 AAATTAAGTAGTACTCCCTCCGTC 57.537 41.667 2.58 0.00 0.00 4.79
3024 4596 2.433662 AAGTAGTACTCCCTCCGTCC 57.566 55.000 2.58 0.00 0.00 4.79
3025 4597 0.550432 AGTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
3027 4599 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3028 4600 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3030 4602 2.023695 AGTACTCCCTCCGTCCCAAATA 60.024 50.000 0.00 0.00 0.00 1.40
3031 4603 1.961133 ACTCCCTCCGTCCCAAATAA 58.039 50.000 0.00 0.00 0.00 1.40
3033 4605 2.850568 ACTCCCTCCGTCCCAAATAATT 59.149 45.455 0.00 0.00 0.00 1.40
3034 4606 4.042174 ACTCCCTCCGTCCCAAATAATTA 58.958 43.478 0.00 0.00 0.00 1.40
3035 4607 4.663592 ACTCCCTCCGTCCCAAATAATTAT 59.336 41.667 0.00 0.00 0.00 1.28
3036 4608 5.221864 ACTCCCTCCGTCCCAAATAATTATC 60.222 44.000 0.00 0.00 0.00 1.75
3039 4620 4.000988 CTCCGTCCCAAATAATTATCGGG 58.999 47.826 20.13 20.13 37.72 5.14
3072 4653 4.809673 GTTATTGCTTTCAAGAACCCTGG 58.190 43.478 4.69 0.00 44.36 4.45
3075 4656 2.586425 TGCTTTCAAGAACCCTGGAAG 58.414 47.619 0.00 0.00 34.05 3.46
3140 4721 4.722193 CCGTGAAAGGGCATGACT 57.278 55.556 0.00 0.00 33.71 3.41
3145 4726 3.119849 CCGTGAAAGGGCATGACTAAAAG 60.120 47.826 0.00 0.00 33.71 2.27
3150 4731 6.808704 GTGAAAGGGCATGACTAAAAGATTTC 59.191 38.462 0.00 0.00 0.00 2.17
3206 4846 8.295569 AGTACAAGAAGAAAACGCTTAAGTAG 57.704 34.615 4.02 1.54 0.00 2.57
3209 4849 6.985059 ACAAGAAGAAAACGCTTAAGTAGACT 59.015 34.615 4.02 0.00 0.00 3.24
3224 4864 8.833231 TTAAGTAGACTGACAAGAAAATCAGG 57.167 34.615 6.24 0.00 45.55 3.86
3244 4889 3.196901 AGGTGTTCCCCAAAACAAGAAAC 59.803 43.478 0.00 0.00 40.62 2.78
3259 4904 3.915437 AGAAACCCAGTAAACAATGCG 57.085 42.857 0.00 0.00 0.00 4.73
3271 4916 7.167968 CCAGTAAACAATGCGAAAATATCCATG 59.832 37.037 0.00 0.00 0.00 3.66
3279 4924 0.675633 AAAATATCCATGGCGGCTGC 59.324 50.000 9.72 9.72 41.71 5.25
3281 4926 0.607489 AATATCCATGGCGGCTGCTC 60.607 55.000 18.85 8.30 42.25 4.26
3282 4927 1.771783 ATATCCATGGCGGCTGCTCA 61.772 55.000 18.85 14.15 42.25 4.26
3283 4928 1.981951 TATCCATGGCGGCTGCTCAA 61.982 55.000 18.85 3.87 42.25 3.02
3284 4929 2.635787 ATCCATGGCGGCTGCTCAAT 62.636 55.000 18.85 6.28 42.25 2.57
3285 4930 2.411701 CATGGCGGCTGCTCAATG 59.588 61.111 18.85 14.68 42.25 2.82
3286 4931 2.044650 ATGGCGGCTGCTCAATGT 60.045 55.556 18.85 0.00 42.25 2.71
3293 4938 2.792542 GCGGCTGCTCAATGTTATCAAC 60.793 50.000 11.21 0.00 38.39 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.635120 AGAAAATGGTAATGGATAGCCTCC 58.365 41.667 0.00 0.00 45.19 4.30
6 7 7.588497 AAAGAAAATGGTAATGGATAGCCTC 57.412 36.000 0.00 0.00 34.31 4.70
8 9 9.077885 TGATAAAGAAAATGGTAATGGATAGCC 57.922 33.333 0.00 0.00 0.00 3.93
53 54 9.013229 AGCTGTTATCTTATGTGACATGAAAAA 57.987 29.630 8.61 0.00 0.00 1.94
54 55 8.565896 AGCTGTTATCTTATGTGACATGAAAA 57.434 30.769 8.61 0.00 0.00 2.29
55 56 9.317936 CTAGCTGTTATCTTATGTGACATGAAA 57.682 33.333 8.61 0.00 0.00 2.69
56 57 7.439356 GCTAGCTGTTATCTTATGTGACATGAA 59.561 37.037 8.61 0.00 0.00 2.57
57 58 6.925718 GCTAGCTGTTATCTTATGTGACATGA 59.074 38.462 8.61 0.00 0.00 3.07
58 59 6.703165 TGCTAGCTGTTATCTTATGTGACATG 59.297 38.462 17.23 0.00 0.00 3.21
59 60 6.820335 TGCTAGCTGTTATCTTATGTGACAT 58.180 36.000 17.23 2.65 0.00 3.06
60 61 6.220726 TGCTAGCTGTTATCTTATGTGACA 57.779 37.500 17.23 0.00 0.00 3.58
61 62 6.703607 ACATGCTAGCTGTTATCTTATGTGAC 59.296 38.462 17.23 0.00 0.00 3.67
62 63 6.703165 CACATGCTAGCTGTTATCTTATGTGA 59.297 38.462 23.99 0.00 43.16 3.58
63 64 6.073385 CCACATGCTAGCTGTTATCTTATGTG 60.073 42.308 22.49 22.49 41.30 3.21
64 65 5.994054 CCACATGCTAGCTGTTATCTTATGT 59.006 40.000 17.23 10.69 0.00 2.29
65 66 6.226052 TCCACATGCTAGCTGTTATCTTATG 58.774 40.000 17.23 10.04 0.00 1.90
66 67 6.425210 TCCACATGCTAGCTGTTATCTTAT 57.575 37.500 17.23 0.00 0.00 1.73
67 68 5.869649 TCCACATGCTAGCTGTTATCTTA 57.130 39.130 17.23 0.00 0.00 2.10
68 69 4.760530 TCCACATGCTAGCTGTTATCTT 57.239 40.909 17.23 0.00 0.00 2.40
69 70 4.760530 TTCCACATGCTAGCTGTTATCT 57.239 40.909 17.23 0.00 0.00 1.98
70 71 5.731686 GCTTTTCCACATGCTAGCTGTTATC 60.732 44.000 17.23 0.27 0.00 1.75
71 72 4.096984 GCTTTTCCACATGCTAGCTGTTAT 59.903 41.667 17.23 0.00 0.00 1.89
72 73 3.440173 GCTTTTCCACATGCTAGCTGTTA 59.560 43.478 17.23 5.80 0.00 2.41
73 74 2.229784 GCTTTTCCACATGCTAGCTGTT 59.770 45.455 17.23 0.00 0.00 3.16
74 75 1.815003 GCTTTTCCACATGCTAGCTGT 59.185 47.619 17.23 14.35 0.00 4.40
75 76 1.814394 TGCTTTTCCACATGCTAGCTG 59.186 47.619 17.23 13.70 0.00 4.24
76 77 2.089980 CTGCTTTTCCACATGCTAGCT 58.910 47.619 17.23 0.00 0.00 3.32
77 78 1.468736 GCTGCTTTTCCACATGCTAGC 60.469 52.381 8.10 8.10 0.00 3.42
78 79 1.814394 TGCTGCTTTTCCACATGCTAG 59.186 47.619 0.00 0.00 0.00 3.42
79 80 1.814394 CTGCTGCTTTTCCACATGCTA 59.186 47.619 0.00 0.00 0.00 3.49
80 81 0.601558 CTGCTGCTTTTCCACATGCT 59.398 50.000 0.00 0.00 0.00 3.79
81 82 0.389426 CCTGCTGCTTTTCCACATGC 60.389 55.000 0.00 0.00 0.00 4.06
82 83 0.389426 GCCTGCTGCTTTTCCACATG 60.389 55.000 0.00 0.00 36.87 3.21
83 84 1.870055 CGCCTGCTGCTTTTCCACAT 61.870 55.000 0.00 0.00 38.05 3.21
84 85 2.554636 CGCCTGCTGCTTTTCCACA 61.555 57.895 0.00 0.00 38.05 4.17
85 86 2.256461 CGCCTGCTGCTTTTCCAC 59.744 61.111 0.00 0.00 38.05 4.02
106 107 3.194861 CAGCGATTTCTGTTTCGGGATA 58.805 45.455 0.00 0.00 35.93 2.59
107 108 2.009774 CAGCGATTTCTGTTTCGGGAT 58.990 47.619 0.00 0.00 35.93 3.85
142 145 2.741116 ATTTCCCGTTTTGGCACGCG 62.741 55.000 3.53 3.53 38.93 6.01
200 203 2.100989 GATAACCGTGAGACCTGGTCT 58.899 52.381 28.70 28.70 46.42 3.85
201 204 1.822990 TGATAACCGTGAGACCTGGTC 59.177 52.381 19.20 19.20 34.11 4.02
202 205 1.825474 CTGATAACCGTGAGACCTGGT 59.175 52.381 0.00 0.00 37.68 4.00
203 206 1.137086 CCTGATAACCGTGAGACCTGG 59.863 57.143 0.00 0.00 0.00 4.45
204 207 1.825474 ACCTGATAACCGTGAGACCTG 59.175 52.381 0.00 0.00 0.00 4.00
205 208 1.825474 CACCTGATAACCGTGAGACCT 59.175 52.381 0.00 0.00 0.00 3.85
206 209 1.822990 TCACCTGATAACCGTGAGACC 59.177 52.381 0.00 0.00 32.85 3.85
210 213 1.822990 GGTCTCACCTGATAACCGTGA 59.177 52.381 0.00 0.00 34.73 4.35
211 214 1.134788 GGGTCTCACCTGATAACCGTG 60.135 57.143 0.00 0.00 38.64 4.94
212 215 1.192428 GGGTCTCACCTGATAACCGT 58.808 55.000 0.00 0.00 38.64 4.83
221 224 3.625632 ATCAGGGCGGGTCTCACCT 62.626 63.158 0.00 0.00 38.64 4.00
222 225 3.083997 ATCAGGGCGGGTCTCACC 61.084 66.667 0.00 0.00 37.60 4.02
223 226 2.187946 CATCAGGGCGGGTCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
224 227 2.896677 ATCCATCAGGGCGGGTCTCA 62.897 60.000 0.00 0.00 36.21 3.27
225 228 2.143419 ATCCATCAGGGCGGGTCTC 61.143 63.158 0.00 0.00 36.21 3.36
226 229 2.040464 ATCCATCAGGGCGGGTCT 60.040 61.111 0.00 0.00 36.21 3.85
227 230 2.111878 CATCCATCAGGGCGGGTC 59.888 66.667 0.00 0.00 36.21 4.46
228 231 2.366837 TCATCCATCAGGGCGGGT 60.367 61.111 0.00 0.00 36.21 5.28
229 232 2.111878 GTCATCCATCAGGGCGGG 59.888 66.667 0.00 0.00 36.21 6.13
230 233 1.524621 GTGTCATCCATCAGGGCGG 60.525 63.158 0.00 0.00 36.21 6.13
231 234 1.884464 CGTGTCATCCATCAGGGCG 60.884 63.158 0.00 0.00 36.21 6.13
232 235 1.091771 CACGTGTCATCCATCAGGGC 61.092 60.000 7.58 0.00 36.21 5.19
233 236 0.536724 TCACGTGTCATCCATCAGGG 59.463 55.000 16.51 0.00 34.83 4.45
234 237 1.066929 TGTCACGTGTCATCCATCAGG 60.067 52.381 16.51 0.00 0.00 3.86
235 238 2.368655 TGTCACGTGTCATCCATCAG 57.631 50.000 16.51 0.00 0.00 2.90
236 239 3.261580 GAATGTCACGTGTCATCCATCA 58.738 45.455 24.84 9.40 0.00 3.07
237 240 3.062639 GTGAATGTCACGTGTCATCCATC 59.937 47.826 24.84 19.34 37.67 3.51
238 241 3.002791 GTGAATGTCACGTGTCATCCAT 58.997 45.455 24.84 12.42 37.67 3.41
239 242 2.412870 GTGAATGTCACGTGTCATCCA 58.587 47.619 24.84 18.07 37.67 3.41
250 253 5.259832 TGCTTTGTGATTTGTGAATGTCA 57.740 34.783 0.00 0.00 0.00 3.58
251 254 6.154445 AGATGCTTTGTGATTTGTGAATGTC 58.846 36.000 0.00 0.00 0.00 3.06
252 255 6.092955 AGATGCTTTGTGATTTGTGAATGT 57.907 33.333 0.00 0.00 0.00 2.71
253 256 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
254 257 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
255 258 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
256 259 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
257 260 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
258 261 7.066766 GGAGAGATTAGATGCTTTGTGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
259 262 7.416022 GGAGAGATTAGATGCTTTGTGATTTG 58.584 38.462 0.00 0.00 0.00 2.32
260 263 6.545298 GGGAGAGATTAGATGCTTTGTGATTT 59.455 38.462 0.00 0.00 0.00 2.17
261 264 6.060788 GGGAGAGATTAGATGCTTTGTGATT 58.939 40.000 0.00 0.00 0.00 2.57
262 265 5.455899 GGGGAGAGATTAGATGCTTTGTGAT 60.456 44.000 0.00 0.00 0.00 3.06
263 266 4.141620 GGGGAGAGATTAGATGCTTTGTGA 60.142 45.833 0.00 0.00 0.00 3.58
264 267 4.133078 GGGGAGAGATTAGATGCTTTGTG 58.867 47.826 0.00 0.00 0.00 3.33
265 268 3.137360 GGGGGAGAGATTAGATGCTTTGT 59.863 47.826 0.00 0.00 0.00 2.83
266 269 3.749226 GGGGGAGAGATTAGATGCTTTG 58.251 50.000 0.00 0.00 0.00 2.77
288 291 0.323725 CCACCCCCACCTGAAATCAG 60.324 60.000 3.37 3.37 43.40 2.90
289 292 1.773635 CCACCCCCACCTGAAATCA 59.226 57.895 0.00 0.00 0.00 2.57
290 293 1.000359 CCCACCCCCACCTGAAATC 60.000 63.158 0.00 0.00 0.00 2.17
291 294 2.557181 CCCCACCCCCACCTGAAAT 61.557 63.158 0.00 0.00 0.00 2.17
292 295 2.656269 TACCCCACCCCCACCTGAAA 62.656 60.000 0.00 0.00 0.00 2.69
293 296 3.130153 TACCCCACCCCCACCTGAA 62.130 63.158 0.00 0.00 0.00 3.02
294 297 3.543626 TACCCCACCCCCACCTGA 61.544 66.667 0.00 0.00 0.00 3.86
295 298 2.857998 ATCTACCCCACCCCCACCTG 62.858 65.000 0.00 0.00 0.00 4.00
296 299 2.587774 ATCTACCCCACCCCCACCT 61.588 63.158 0.00 0.00 0.00 4.00
297 300 2.043941 ATCTACCCCACCCCCACC 59.956 66.667 0.00 0.00 0.00 4.61
298 301 3.056754 GCATCTACCCCACCCCCAC 62.057 68.421 0.00 0.00 0.00 4.61
299 302 2.694616 GCATCTACCCCACCCCCA 60.695 66.667 0.00 0.00 0.00 4.96
300 303 1.580994 AAAGCATCTACCCCACCCCC 61.581 60.000 0.00 0.00 0.00 5.40
301 304 0.395724 CAAAGCATCTACCCCACCCC 60.396 60.000 0.00 0.00 0.00 4.95
302 305 0.331616 ACAAAGCATCTACCCCACCC 59.668 55.000 0.00 0.00 0.00 4.61
303 306 1.004277 TCACAAAGCATCTACCCCACC 59.996 52.381 0.00 0.00 0.00 4.61
304 307 2.489938 TCACAAAGCATCTACCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
305 308 3.737559 AATCACAAAGCATCTACCCCA 57.262 42.857 0.00 0.00 0.00 4.96
306 309 3.763897 ACAAATCACAAAGCATCTACCCC 59.236 43.478 0.00 0.00 0.00 4.95
307 310 4.458989 TCACAAATCACAAAGCATCTACCC 59.541 41.667 0.00 0.00 0.00 3.69
308 311 5.627499 TCACAAATCACAAAGCATCTACC 57.373 39.130 0.00 0.00 0.00 3.18
309 312 6.034256 GCATTCACAAATCACAAAGCATCTAC 59.966 38.462 0.00 0.00 0.00 2.59
310 313 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
311 314 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
312 315 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
313 316 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
314 317 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
315 318 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
316 319 4.977741 GTGGCATTCACAAATCACAAAG 57.022 40.909 0.00 0.00 45.39 2.77
327 330 2.093890 TGGATGACATGTGGCATTCAC 58.906 47.619 1.15 0.00 43.95 3.18
328 331 2.510928 TGGATGACATGTGGCATTCA 57.489 45.000 1.15 5.70 46.54 2.57
329 332 2.953648 TGATGGATGACATGTGGCATTC 59.046 45.455 1.15 1.06 45.42 2.67
330 333 3.021177 TGATGGATGACATGTGGCATT 57.979 42.857 1.15 0.00 45.42 3.56
332 335 2.026075 TCTTGATGGATGACATGTGGCA 60.026 45.455 1.15 0.00 40.72 4.92
333 336 2.646930 TCTTGATGGATGACATGTGGC 58.353 47.619 1.15 0.00 40.72 5.01
334 337 3.568430 CCATCTTGATGGATGACATGTGG 59.432 47.826 21.56 0.00 44.01 4.17
335 338 3.568430 CCCATCTTGATGGATGACATGTG 59.432 47.826 26.19 6.75 44.01 3.21
336 339 3.203710 ACCCATCTTGATGGATGACATGT 59.796 43.478 26.19 13.35 44.01 3.21
337 340 3.819337 GACCCATCTTGATGGATGACATG 59.181 47.826 26.19 12.81 44.01 3.21
338 341 3.720526 AGACCCATCTTGATGGATGACAT 59.279 43.478 26.19 8.19 44.01 3.06
339 342 3.117745 AGACCCATCTTGATGGATGACA 58.882 45.455 26.19 0.00 44.01 3.58
340 343 3.135348 TGAGACCCATCTTGATGGATGAC 59.865 47.826 26.19 16.12 44.01 3.06
341 344 3.135348 GTGAGACCCATCTTGATGGATGA 59.865 47.826 26.19 7.60 44.01 2.92
342 345 3.474600 GTGAGACCCATCTTGATGGATG 58.525 50.000 26.19 15.20 44.39 3.51
343 346 2.441001 GGTGAGACCCATCTTGATGGAT 59.559 50.000 26.19 13.41 44.39 3.41
344 347 1.839994 GGTGAGACCCATCTTGATGGA 59.160 52.381 26.19 7.41 44.39 3.41
345 348 1.842562 AGGTGAGACCCATCTTGATGG 59.157 52.381 19.73 19.73 39.75 3.51
346 349 2.915349 CAGGTGAGACCCATCTTGATG 58.085 52.381 3.77 3.77 39.75 3.07
347 350 1.211457 GCAGGTGAGACCCATCTTGAT 59.789 52.381 0.00 0.00 39.75 2.57
348 351 0.615331 GCAGGTGAGACCCATCTTGA 59.385 55.000 0.00 0.00 39.75 3.02
349 352 0.617413 AGCAGGTGAGACCCATCTTG 59.383 55.000 0.00 0.00 39.75 3.02
350 353 2.237392 GTTAGCAGGTGAGACCCATCTT 59.763 50.000 0.00 0.00 39.75 2.40
351 354 1.834263 GTTAGCAGGTGAGACCCATCT 59.166 52.381 0.00 0.00 39.75 2.90
352 355 1.134371 GGTTAGCAGGTGAGACCCATC 60.134 57.143 0.00 0.00 39.75 3.51
353 356 0.912486 GGTTAGCAGGTGAGACCCAT 59.088 55.000 0.00 0.00 39.75 4.00
354 357 2.372852 GGTTAGCAGGTGAGACCCA 58.627 57.895 0.00 0.00 39.75 4.51
355 358 1.602771 GGGTTAGCAGGTGAGACCC 59.397 63.158 5.28 5.28 39.75 4.46
356 359 0.912486 ATGGGTTAGCAGGTGAGACC 59.088 55.000 0.00 0.00 38.99 3.85
357 360 1.555075 TCATGGGTTAGCAGGTGAGAC 59.445 52.381 0.00 0.00 0.00 3.36
358 361 1.833630 CTCATGGGTTAGCAGGTGAGA 59.166 52.381 0.00 0.00 36.15 3.27
359 362 1.833630 TCTCATGGGTTAGCAGGTGAG 59.166 52.381 0.00 0.00 35.58 3.51
360 363 1.555075 GTCTCATGGGTTAGCAGGTGA 59.445 52.381 0.00 0.00 0.00 4.02
361 364 1.407437 GGTCTCATGGGTTAGCAGGTG 60.407 57.143 0.00 0.00 0.00 4.00
362 365 0.912486 GGTCTCATGGGTTAGCAGGT 59.088 55.000 0.00 0.00 0.00 4.00
363 366 1.134280 CAGGTCTCATGGGTTAGCAGG 60.134 57.143 0.00 0.00 0.00 4.85
364 367 1.134280 CCAGGTCTCATGGGTTAGCAG 60.134 57.143 0.00 0.00 33.94 4.24
365 368 0.911769 CCAGGTCTCATGGGTTAGCA 59.088 55.000 0.00 0.00 33.94 3.49
366 369 0.912486 ACCAGGTCTCATGGGTTAGC 59.088 55.000 5.48 0.00 42.48 3.09
367 370 2.472029 AGACCAGGTCTCATGGGTTAG 58.528 52.381 17.31 0.00 38.71 2.34
368 371 2.642171 AGACCAGGTCTCATGGGTTA 57.358 50.000 17.31 0.00 38.71 2.85
369 372 3.502086 AGACCAGGTCTCATGGGTT 57.498 52.632 17.31 0.00 38.71 4.11
377 380 8.214364 GGAAAATAATTCTATGAGACCAGGTCT 58.786 37.037 23.18 23.18 46.42 3.85
378 381 7.171678 CGGAAAATAATTCTATGAGACCAGGTC 59.828 40.741 12.25 12.25 0.00 3.85
379 382 6.992715 CGGAAAATAATTCTATGAGACCAGGT 59.007 38.462 0.00 0.00 0.00 4.00
380 383 6.992715 ACGGAAAATAATTCTATGAGACCAGG 59.007 38.462 0.00 0.00 0.00 4.45
381 384 7.519008 GCACGGAAAATAATTCTATGAGACCAG 60.519 40.741 0.00 0.00 0.00 4.00
382 385 6.260050 GCACGGAAAATAATTCTATGAGACCA 59.740 38.462 0.00 0.00 0.00 4.02
383 386 6.260050 TGCACGGAAAATAATTCTATGAGACC 59.740 38.462 0.00 0.00 0.00 3.85
384 387 7.126398 GTGCACGGAAAATAATTCTATGAGAC 58.874 38.462 0.00 0.00 0.00 3.36
385 388 6.260050 GGTGCACGGAAAATAATTCTATGAGA 59.740 38.462 11.45 0.00 0.00 3.27
386 389 6.430451 GGTGCACGGAAAATAATTCTATGAG 58.570 40.000 11.45 0.00 0.00 2.90
387 390 5.007234 CGGTGCACGGAAAATAATTCTATGA 59.993 40.000 18.87 0.00 39.42 2.15
388 391 5.007234 TCGGTGCACGGAAAATAATTCTATG 59.993 40.000 23.20 0.00 44.45 2.23
389 392 5.120399 TCGGTGCACGGAAAATAATTCTAT 58.880 37.500 23.20 0.00 44.45 1.98
390 393 4.505808 TCGGTGCACGGAAAATAATTCTA 58.494 39.130 23.20 0.00 44.45 2.10
391 394 3.340034 TCGGTGCACGGAAAATAATTCT 58.660 40.909 23.20 0.00 44.45 2.40
392 395 3.750639 TCGGTGCACGGAAAATAATTC 57.249 42.857 23.20 0.00 44.45 2.17
393 396 4.261031 GCTATCGGTGCACGGAAAATAATT 60.261 41.667 27.97 14.00 44.45 1.40
394 397 3.250040 GCTATCGGTGCACGGAAAATAAT 59.750 43.478 27.97 14.65 44.45 1.28
395 398 2.610374 GCTATCGGTGCACGGAAAATAA 59.390 45.455 27.97 12.18 44.45 1.40
396 399 2.206750 GCTATCGGTGCACGGAAAATA 58.793 47.619 27.97 16.22 44.45 1.40
397 400 1.014352 GCTATCGGTGCACGGAAAAT 58.986 50.000 27.97 15.98 44.45 1.82
398 401 1.022451 GGCTATCGGTGCACGGAAAA 61.022 55.000 27.97 18.58 44.45 2.29
399 402 1.448893 GGCTATCGGTGCACGGAAA 60.449 57.895 27.97 9.54 44.45 3.13
400 403 2.185867 GGCTATCGGTGCACGGAA 59.814 61.111 27.97 16.86 44.45 4.30
401 404 3.845259 GGGCTATCGGTGCACGGA 61.845 66.667 26.72 26.72 44.45 4.69
402 405 4.910585 GGGGCTATCGGTGCACGG 62.911 72.222 17.69 17.69 44.45 4.94
412 415 2.807382 GGAGGGAGGGAGGGGCTAT 61.807 68.421 0.00 0.00 0.00 2.97
476 479 3.308878 CTTGTTTTCTCGCGCCCGG 62.309 63.158 0.00 0.00 34.56 5.73
478 481 2.126850 GCTTGTTTTCTCGCGCCC 60.127 61.111 0.00 0.00 0.00 6.13
552 566 2.021722 CTGTGGTTTCGGTGTGTGG 58.978 57.895 0.00 0.00 0.00 4.17
613 645 0.593008 GTACGCCGCGATGTATGTGA 60.593 55.000 21.79 0.00 0.00 3.58
616 648 0.384601 TACGTACGCCGCGATGTATG 60.385 55.000 21.79 20.95 41.42 2.39
703 738 0.517316 CGCTTGGACTTCTTTTCCCG 59.483 55.000 0.00 0.00 31.33 5.14
705 740 1.605753 ACCGCTTGGACTTCTTTTCC 58.394 50.000 0.00 0.00 36.26 3.13
706 741 3.710326 AAACCGCTTGGACTTCTTTTC 57.290 42.857 0.00 0.00 36.26 2.29
707 742 3.181479 GGAAAACCGCTTGGACTTCTTTT 60.181 43.478 0.00 0.00 36.26 2.27
708 743 2.361119 GGAAAACCGCTTGGACTTCTTT 59.639 45.455 0.00 0.00 36.26 2.52
728 763 1.747355 AGATCTTTTGATTGCCAGCGG 59.253 47.619 0.00 0.00 39.67 5.52
729 764 3.544834 CGTAGATCTTTTGATTGCCAGCG 60.545 47.826 0.00 0.00 39.67 5.18
769 804 4.659172 CCACCGGGCAAGCAAGGA 62.659 66.667 6.32 0.00 0.00 3.36
787 822 3.667282 GGAGGTAGCCGCGCGATA 61.667 66.667 34.63 20.82 0.00 2.92
796 831 0.179034 CAAGAGGCATGGGAGGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
797 832 1.134280 CACAAGAGGCATGGGAGGTAG 60.134 57.143 0.00 0.00 0.00 3.18
872 909 2.301870 CGCTAGTGGGATTTATAGGGCA 59.698 50.000 0.00 0.00 0.00 5.36
912 949 4.704833 ATGCTTCCGGTGCGTGCT 62.705 61.111 14.20 0.18 0.00 4.40
978 1047 3.607987 CGATCGTCTTGGCGCGTC 61.608 66.667 2.29 2.29 0.00 5.19
979 1048 4.111016 TCGATCGTCTTGGCGCGT 62.111 61.111 15.94 0.00 0.00 6.01
980 1049 3.315521 CTCGATCGTCTTGGCGCG 61.316 66.667 15.94 0.00 0.00 6.86
982 1051 2.956964 GCCTCGATCGTCTTGGCG 60.957 66.667 15.94 0.00 33.96 5.69
983 1052 1.227380 ATGCCTCGATCGTCTTGGC 60.227 57.895 25.04 25.04 43.49 4.52
984 1053 1.493950 GCATGCCTCGATCGTCTTGG 61.494 60.000 15.94 13.68 0.00 3.61
985 1054 1.493950 GGCATGCCTCGATCGTCTTG 61.494 60.000 29.98 13.68 0.00 3.02
986 1055 1.227380 GGCATGCCTCGATCGTCTT 60.227 57.895 29.98 1.63 0.00 3.01
987 1056 2.130426 AGGCATGCCTCGATCGTCT 61.130 57.895 34.07 8.64 44.43 4.18
988 1057 1.953138 CAGGCATGCCTCGATCGTC 60.953 63.158 36.65 6.47 46.28 4.20
989 1058 2.107750 CAGGCATGCCTCGATCGT 59.892 61.111 36.65 11.87 46.28 3.73
1155 1227 4.530857 CGGGCGATGTCCTGGACC 62.531 72.222 23.42 8.03 0.00 4.46
1212 1284 4.437121 GCAAGCAGAAGCAGAGAAACTATG 60.437 45.833 0.00 0.00 45.49 2.23
1213 1285 3.688673 GCAAGCAGAAGCAGAGAAACTAT 59.311 43.478 0.00 0.00 45.49 2.12
1219 1293 1.898472 AGTAGCAAGCAGAAGCAGAGA 59.102 47.619 0.00 0.00 45.49 3.10
1235 1309 1.034838 ACGCAGAGCAGGAGGAGTAG 61.035 60.000 0.00 0.00 0.00 2.57
1291 1402 4.597507 ACCCTATCCTTTTCTGAACTGACA 59.402 41.667 0.00 0.00 0.00 3.58
1407 1525 9.435688 TGTATATATATGCATGGTTTGTCTGTC 57.564 33.333 10.16 0.00 0.00 3.51
1408 1526 9.440773 CTGTATATATATGCATGGTTTGTCTGT 57.559 33.333 10.16 0.00 0.00 3.41
1409 1527 9.657419 TCTGTATATATATGCATGGTTTGTCTG 57.343 33.333 10.16 0.00 0.00 3.51
1410 1528 9.658799 GTCTGTATATATATGCATGGTTTGTCT 57.341 33.333 10.16 0.00 0.00 3.41
1433 1551 5.237344 ACGTACGTGTCAGTTAACTTAGTCT 59.763 40.000 22.14 0.00 0.00 3.24
1436 1554 5.790495 GGTACGTACGTGTCAGTTAACTTAG 59.210 44.000 30.25 0.00 0.00 2.18
1437 1555 5.468746 AGGTACGTACGTGTCAGTTAACTTA 59.531 40.000 30.25 2.65 0.00 2.24
1440 1558 3.908382 CAGGTACGTACGTGTCAGTTAAC 59.092 47.826 30.68 17.01 37.32 2.01
1441 1559 3.812609 TCAGGTACGTACGTGTCAGTTAA 59.187 43.478 34.60 19.16 41.41 2.01
1443 1561 2.221169 TCAGGTACGTACGTGTCAGTT 58.779 47.619 34.60 4.23 41.41 3.16
1444 1562 1.882912 TCAGGTACGTACGTGTCAGT 58.117 50.000 34.60 11.37 41.41 3.41
1608 3125 2.270205 CCTTGCTGATGCCGTCCT 59.730 61.111 0.00 0.00 38.71 3.85
1633 3150 0.394938 TGGCGTAGTGCTTGAGGAAA 59.605 50.000 0.00 0.00 45.43 3.13
1693 3210 5.247564 TCCAAGTACTTACCTGTATGTTGCT 59.752 40.000 8.04 0.00 0.00 3.91
1765 3282 2.513753 TCCTGCCGATCAACATTGTTT 58.486 42.857 0.00 0.00 0.00 2.83
1817 3335 3.475575 TGTGAGCTGCATTGACAGTTTA 58.524 40.909 1.02 0.00 39.96 2.01
1819 3337 1.878088 CTGTGAGCTGCATTGACAGTT 59.122 47.619 1.02 4.29 39.96 3.16
1820 3338 1.520494 CTGTGAGCTGCATTGACAGT 58.480 50.000 1.02 0.00 39.96 3.55
1902 3420 0.040058 TTGAGCCCCATGAACTGCAT 59.960 50.000 0.00 0.00 37.85 3.96
1915 3433 1.298859 CTGCGGGTAGTTGTTGAGCC 61.299 60.000 0.00 0.00 0.00 4.70
1985 3503 0.394762 GCAGGATGGTGATGAAGCCA 60.395 55.000 0.00 0.00 39.33 4.75
2094 3612 4.436998 CAGGTGGTCGCCGAGGTC 62.437 72.222 0.00 0.00 0.00 3.85
2210 3728 1.141881 CCCGACCTTCTCGTCCATG 59.858 63.158 0.00 0.00 41.18 3.66
2369 3912 3.076621 TGTGTCTTAATGCAGCAGAAGG 58.923 45.455 16.30 2.11 0.00 3.46
2370 3913 3.750130 AGTGTGTCTTAATGCAGCAGAAG 59.250 43.478 11.96 11.96 0.00 2.85
2374 3917 3.436704 GCTAAGTGTGTCTTAATGCAGCA 59.563 43.478 0.00 0.00 38.05 4.41
2378 3921 5.862924 TTCAGCTAAGTGTGTCTTAATGC 57.137 39.130 0.00 0.00 38.05 3.56
2381 3924 6.868864 GTCTCATTCAGCTAAGTGTGTCTTAA 59.131 38.462 0.00 0.00 38.05 1.85
2389 3932 3.370366 GCAGTGTCTCATTCAGCTAAGTG 59.630 47.826 0.00 0.00 0.00 3.16
2392 3938 3.244181 TGTGCAGTGTCTCATTCAGCTAA 60.244 43.478 0.00 0.00 0.00 3.09
2413 3959 8.547967 ACTACACAACTAAATGGACACTTATG 57.452 34.615 0.00 0.00 0.00 1.90
2495 4046 6.880942 ACTCCCTTATTCGTACTGAGATAC 57.119 41.667 0.00 0.00 0.00 2.24
2695 4258 6.494835 TGATACACATATAGGACTGCACTGAT 59.505 38.462 0.00 0.00 0.00 2.90
2853 4419 9.431887 GTATTCAGAACACACCACTTATCTTTA 57.568 33.333 0.00 0.00 0.00 1.85
2862 4428 6.879458 AGAAATAGGTATTCAGAACACACCAC 59.121 38.462 11.31 1.27 0.00 4.16
2864 4430 7.390718 ACAAGAAATAGGTATTCAGAACACACC 59.609 37.037 0.00 0.00 0.00 4.16
2865 4431 8.230486 CACAAGAAATAGGTATTCAGAACACAC 58.770 37.037 0.00 0.00 0.00 3.82
2900 4472 9.571810 TTTCATTGAAGGACATGATAAATTTCG 57.428 29.630 0.00 0.00 0.00 3.46
2920 4492 4.050553 CACCTTGCACGAACAATTTCATT 58.949 39.130 0.00 0.00 0.00 2.57
2934 4506 1.561643 TGTTTTGGAACCACCTTGCA 58.438 45.000 0.00 0.00 39.86 4.08
2962 4534 9.730420 GATGTACACTAGTTGTTCAAATGTTTT 57.270 29.630 0.00 0.00 38.81 2.43
2963 4535 9.120538 AGATGTACACTAGTTGTTCAAATGTTT 57.879 29.630 0.00 0.00 38.81 2.83
2964 4536 8.677148 AGATGTACACTAGTTGTTCAAATGTT 57.323 30.769 0.00 0.00 38.81 2.71
2965 4537 8.677148 AAGATGTACACTAGTTGTTCAAATGT 57.323 30.769 0.00 0.00 38.81 2.71
2966 4538 9.950680 AAAAGATGTACACTAGTTGTTCAAATG 57.049 29.630 0.00 0.00 38.81 2.32
2967 4539 9.950680 CAAAAGATGTACACTAGTTGTTCAAAT 57.049 29.630 0.00 0.00 38.81 2.32
2968 4540 8.952278 ACAAAAGATGTACACTAGTTGTTCAAA 58.048 29.630 0.00 0.00 41.63 2.69
2969 4541 8.500753 ACAAAAGATGTACACTAGTTGTTCAA 57.499 30.769 0.00 0.00 41.63 2.69
2970 4542 9.602568 TTACAAAAGATGTACACTAGTTGTTCA 57.397 29.630 17.10 0.09 44.11 3.18
2971 4543 9.859692 GTTACAAAAGATGTACACTAGTTGTTC 57.140 33.333 17.10 10.36 44.11 3.18
2972 4544 9.386010 TGTTACAAAAGATGTACACTAGTTGTT 57.614 29.630 17.10 0.00 44.11 2.83
2973 4545 8.951787 TGTTACAAAAGATGTACACTAGTTGT 57.048 30.769 16.46 16.46 44.11 3.32
3013 4585 3.577805 AATTATTTGGGACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
3015 4587 4.000988 CGATAATTATTTGGGACGGAGGG 58.999 47.826 0.00 0.00 0.00 4.30
3016 4588 4.000988 CCGATAATTATTTGGGACGGAGG 58.999 47.826 13.14 0.00 41.30 4.30
3017 4589 4.000988 CCCGATAATTATTTGGGACGGAG 58.999 47.826 23.15 10.82 42.77 4.63
3018 4590 3.647113 TCCCGATAATTATTTGGGACGGA 59.353 43.478 24.90 11.25 43.85 4.69
3019 4591 4.000988 CTCCCGATAATTATTTGGGACGG 58.999 47.826 24.90 18.84 43.85 4.79
3020 4592 4.638304 ACTCCCGATAATTATTTGGGACG 58.362 43.478 24.90 22.22 43.85 4.79
3021 4593 6.766429 ACTACTCCCGATAATTATTTGGGAC 58.234 40.000 24.90 3.30 43.85 4.46
3022 4594 8.495160 TTACTACTCCCGATAATTATTTGGGA 57.505 34.615 26.04 26.04 46.47 4.37
3023 4595 9.563748 TTTTACTACTCCCGATAATTATTTGGG 57.436 33.333 22.18 22.18 41.43 4.12
3031 4603 9.269453 GCAATAACTTTTACTACTCCCGATAAT 57.731 33.333 0.00 0.00 0.00 1.28
3033 4605 8.015185 AGCAATAACTTTTACTACTCCCGATA 57.985 34.615 0.00 0.00 0.00 2.92
3034 4606 6.885922 AGCAATAACTTTTACTACTCCCGAT 58.114 36.000 0.00 0.00 0.00 4.18
3035 4607 6.290294 AGCAATAACTTTTACTACTCCCGA 57.710 37.500 0.00 0.00 0.00 5.14
3036 4608 6.980051 AAGCAATAACTTTTACTACTCCCG 57.020 37.500 0.00 0.00 0.00 5.14
3119 4700 0.608035 TCATGCCCTTTCACGGTTCC 60.608 55.000 0.00 0.00 0.00 3.62
3120 4701 0.521735 GTCATGCCCTTTCACGGTTC 59.478 55.000 0.00 0.00 0.00 3.62
3121 4702 0.110486 AGTCATGCCCTTTCACGGTT 59.890 50.000 0.00 0.00 0.00 4.44
3123 4704 2.107950 TTAGTCATGCCCTTTCACGG 57.892 50.000 0.00 0.00 0.00 4.94
3124 4705 3.751175 TCTTTTAGTCATGCCCTTTCACG 59.249 43.478 0.00 0.00 0.00 4.35
3125 4706 5.904362 ATCTTTTAGTCATGCCCTTTCAC 57.096 39.130 0.00 0.00 0.00 3.18
3126 4707 6.721208 AGAAATCTTTTAGTCATGCCCTTTCA 59.279 34.615 0.00 0.00 0.00 2.69
3127 4708 7.094205 TGAGAAATCTTTTAGTCATGCCCTTTC 60.094 37.037 0.00 0.00 0.00 2.62
3206 4846 5.278022 GGAACACCTGATTTTCTTGTCAGTC 60.278 44.000 0.00 0.00 40.12 3.51
3209 4849 3.888930 GGGAACACCTGATTTTCTTGTCA 59.111 43.478 0.00 0.00 35.85 3.58
3224 4864 3.527533 GGTTTCTTGTTTTGGGGAACAC 58.472 45.455 0.00 0.00 39.11 3.32
3244 4889 5.977129 GGATATTTTCGCATTGTTTACTGGG 59.023 40.000 0.00 0.00 0.00 4.45
3259 4904 1.336240 GCAGCCGCCATGGATATTTTC 60.336 52.381 18.40 0.00 42.00 2.29
3271 4916 0.308993 GATAACATTGAGCAGCCGCC 59.691 55.000 0.00 0.00 39.83 6.13
3279 4924 6.820152 TCTCATGTGGAGTTGATAACATTGAG 59.180 38.462 0.00 0.00 44.40 3.02
3281 4926 6.372381 TGTCTCATGTGGAGTTGATAACATTG 59.628 38.462 0.00 0.00 44.40 2.82
3282 4927 6.475504 TGTCTCATGTGGAGTTGATAACATT 58.524 36.000 0.00 0.00 44.40 2.71
3283 4928 6.053632 TGTCTCATGTGGAGTTGATAACAT 57.946 37.500 0.00 0.00 44.40 2.71
3284 4929 5.482163 TGTCTCATGTGGAGTTGATAACA 57.518 39.130 0.00 0.00 44.40 2.41
3285 4930 5.934625 ACTTGTCTCATGTGGAGTTGATAAC 59.065 40.000 0.00 0.00 44.40 1.89
3286 4931 6.114187 ACTTGTCTCATGTGGAGTTGATAA 57.886 37.500 0.00 0.00 44.40 1.75
3293 4938 3.058432 CAGCAAACTTGTCTCATGTGGAG 60.058 47.826 0.00 0.00 45.49 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.