>input_sequence_53428
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----------------------------ATGCCTGCTGCCGTCTCTGGGTGCCTCTTGGCGAGGAGCATGGCGAGCCACC
ACAAACACCA---GCAGCGGGGAGCGGCGGCGACGGCGCCGGGGGCACTGCCGGTGATCAACATTGGCCGGCTCGGCGAC
AAGGACCCCGCCGCGCGGGCGCTCGTGGTCCAGGACATCGCCCGGGCGTGCCGCGACCGGGGGTGCTTCCAGGTTCGTGT
CGTCA--TAGTTTCTCTGCTTCTGCTTGCTACT----CCTCCT--------------GCTCTGCGTCCTCTGGT-----C
CTCAGG--------------CGAACGACACCTCCGCTGCACTGTCAGTTCAGA-AAAGGATAGGGTTACAAGTTACACGT
GCTGACGTGGACGCACCACATGCCCCATTTTTATACTGACAG------TGACCTGGCACTAAGTTAACTGTATCCAAAAC
AAGCGACAGACAAACCATGCATATATATACAGACTAAGTTAA--------------------------------------
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----------------------------------------------------CTGACACGTACGTA--------------
---------------CCTGAAGGTGGTAAACCACGGCGTCAGCAAGTCGGCCATGGACGGCGCCCTGGAGGCCGCCTCGG
AGTTCTTCGACATGCCCGCGGAGCGCAAGGCGGCGTTCGCCTGCGCCGACATCCGCAGCCCGGTCCGGTACGACACCAGC
TCCAAGGACGGCATCAGCAAGGCCAGGTCTTTCCTCAAGCACTACGCCAATCCCCTCGACCACTGGGTCGACTCCTGGCC
AACCCAACCAGCAACATACAGGTAAGTACTTGGACATCAACTTTTACAAGATCGACCGATGAATCATCCCAGCTTATGAC
CAAAC-AATGTTGATCGGCAGGAAGAAGATGGGGACGTACGCGGTGGAGATACATAAACTGTCAATGCAGCTCACAGGGG
CCATCGTGCAGGGGCTGGGGCTATGCCCAATGCACCTGCAGGAGAAGCTCGGAGCAGGGATGCAGTTCATGGGGCTCAAC
AACTACCCGCAGGGGTCGTCCCGGGCGGGCGACACGGTCGGGCTGGCGCCGCACTCCGACATTGGCTTCATCACCATCCT
GCTGCAGAGCTCGCCGGGGCTCGAGGTGACGCACCACGACGACGGCGGCGTCTGGACGCCCGTCCCGGCCATCCCGGGGG
CGCTCCACGTCGACCTCGGCGACCACCTGGAGGTGCTGAGCAACGGGCGGCTCAGGTCCCTCCTGCACCGGGCCATCCTC
AACACCGACGAGGCGAGGATCTCCATCGCCAGCATCCACGGCGCGGCCATGGACGAGAAGGTCGGGTGCGCCGAGGAGCT
CGTCGACGAGCGCCACCCGAGGATGTACAGGGAGAGCAGCTTCCATGACTTCCTCGACTTCCTGCCCACCAACGTCAAGG
CGTACCGGAGGTTCGTCGAGACCCTCAAGATCGA---CAGCGCTTAA---------------------------------
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---------------------------------------------------
>chr2D_1_TraesCS2D01G539600
ACTCTGGAGGCTATCCATTACCATTTTCTTTATCAATGATGGAATAATCAATTTTTTTCATGTCACATAAGATAACAGCT
AGCATGTGGAAAAGCAGCAGGCGGGGTA-TCCCGAAACAGAAA-TCGCTGCTTCGTCAGCTCGCCGCGTGCCAAAACGGG
AAATCCCTCGTGCACCGAGGAAAAAAATTAAAAAATTATATGAGACCAGGTCTCACGGTTATCAGGTGAGACCCGCCCTG
ATGGATGACACGTGACATTCACAAATCACAAAGCATCTAATCTCTCCCCCCTGATTTCAGGTGGGGGTGGGGTAGATGCT
TTGTGATTTGTGAATGCCACATGTCATCCATCAAGATGGGTCTCACCTGCTAACCCATGAGACCTGGTCTCATAGAATTA
TTTTCCGTGCACCGATAGCCCCTCCCTCCCTCCCTCCCTCTTGCCACGCCCTGCCGCCGGTTGAGCTCCTCCCCACCCCC
GGGCGCGAGAAAACAAGCATTATCCAACGGACCCGGCGCCAACTTGGGCAGAGCAAA-----------AGCCTACTTGGT
CACTCCCACACACCGAAACC-ACAGCTGG----------CCC-------CGGAAAGGGGCCGGCCGGGCGACCATCACCT
GGACTCACAT---ACATCGCGGCGTACGTACTCCTACGTAGTACATGCCCAACTGGGGCGGCTGCTCCTGGACCGGAACC
GCGCGTCGTCCGGCGAGCGGGAAAAGAAGTCCAAGCGGTTTTCCGCTGGCAATCAAAAGATCTACGTGCAGGGGATCTGG
TATTCCTTGCTTGCCCGGTGGTATCGCGCGGCTACCTCCCATG--CCTCTTGTGTGCTGCCGATCGCTGATTGCTTCCTG
CTTCTTCGTCCTCCGCTCGCCGAGATTCTGCCCTATAAATCCCACTAGCGCTCGGAATCCAGATGGAAAGCACGCACCGG
AAGCATCTT--------------------------------AGAAGAAGAAGAGCCAGCAACAAGGAACGATATCCGTCT
GTGTTGGACGCGCCAAGACGATCGAGGCATGCCTGCTGCCGTCTCTGGGTGCCTCTTGGCGAGGAGCATGGCGAGCCACC
ACAAACACCA---GCAGCGGGGAGCGGCGGCGACGGCGCCGGGGGCACTGCCGGTGATCAACATTGGCCGGCTCGGCGAC
AAGGACCCCGCCGCGCGGGCGCTCGTGGTCCAGGACATCGCCCGGGCGTGCCGCGACCGGGGGTGCTTCCAGGTTCGTGT
CGTCA--TAGTTTCTCTGCTTCTGCTTGCTACT----CCTCCT--------------GCTCTGCGTCCTCTGGT-----C
CTCAGG--------------CGAACGACACCTCCGCTGCACTGTCAGTTCAGA-AAAGGATAGGGTTACAAGTTACACGT
GCTGACGTGGACGCACCACATGCCCCATTTTTATACTGACAG------TGACCTGGCACTAAGTTAACTGTATCCAAAAC
AAGCGACAGACAAACCATGCATATATATACAGACTAAGTTAA--------------------------------------
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----------------------------------------------------CTGACACGTACGTA--------------
---------------CCTGAAGGTGGTAAACCACGGCGTCAGCAAGTCGGCCATGGACGGCGCCCTGGAGGCCGCCTCGG
AGTTCTTCGACATGCCCGCGGAGCGCAAGGCGGCGTTCGCCTGCGCCGACATCCGCAGCCCGGTCCGGTACGACACCAGC
TCCAAGGACGGCATCAGCAAGGCCAGGTCTTTCCTCAAGCACTACGCCAATCCCCTCGACCACTGGGTCGACTCCTGGCC
AACCCAACCAGCAACATACAGGTAAGTACTTGGACATCAACTTTTACAAGATCGACCGATGAATCATCCCAGCTTATGAC
CAAAC-AATGTTGATCGGCAGGAAGAAGATGGGGACGTACGCGGTGGAGATACATAAACTGTCAATGCAGCTCACAGGGG
CCATCGTGCAGGGGCTGGGGCTATGCCCAATGCACCTGCAGGAGAAGCTCGGAGCAGGGATGCAGTTCATGGGGCTCAAC
AACTACCCGCAGGGGTCGTCCCGGGCGGGCGACACGGTCGGGCTGGCGCCGCACTCCGACATTGGCTTCATCACCATCCT
GCTGCAGAGCTCGCCGGGGCTCGAGGTGACGCACCACGACGACGGCGGCGTCTGGACGCCCGTCCCGGCCATCCCGGGGG
CGCTCCACGTCGACCTCGGCGACCACCTGGAGGTGCTGAGCAACGGGCGGCTCAGGTCCCTCCTGCACCGGGCCATCCTC
AACACCGACGAGGCGAGGATCTCCATCGCCAGCATCCACGGCGCGGCCATGGACGAGAAGGTCGGGTGCGCCGAGGAGCT
CGTCGACGAGCGCCACCCGAGGATGTACAGGGAGAGCAGCTTCCATGACTTCCTCGACTTCCTGCCCACCAACGTCAAGG
CGTACCGGAGGTTCGTCGAGACCCTCAAGATCGA---CAGCGCTTAA----------------------TTCCTTCTGCT
GCATTAAGACACA---CTTAGCTGAATGAGACACTGCACATAAGTGTCCATTTAGTTGT----GT-AGTCTTACTGCTAG
CTGAAGAACAAAATTACGGTTTAATTATGCCTCCATTATCAAGTAGTATCTCAGTACGAATAAGGGAGTATGGTATCAGC
AGAGCTGGATAGGCGTGTGATTAGCAGGGTGCCTTTTTTTT---CACTCCATTTCTTTC---TTTGGGGAAATGCAGTAT
GTCTGCATGTCTCTTCCATCAAAAGGAGGATCAAAGGAACCTTGCCAAGTTCTTCCGGTTCTTTGGTAGTACCTAC----
--ATACACCATGTGTTGATCAGTGCAGTCCTATATGTGTATCAGTTGATTTCACCTATAGAAATTTACTTTCTCATGGGA
TATATTGCGCAACGATATATTAA---ATACAATTTACTGTTTACCATTTGCTTGGTTTTCTTTATCTGTGCCCAAACTCA
AAATCTAAGAGAAACTGATAAAGATAAGTGGTGTGTTCTGAATAC------CTATTTCTTGTGCTTCACATCGAAATTTA
TCATGTCCTTCAATGAAATTGTTCGTGCAAGGTGGTTCCAAAACATCTGGAAAAAAACATTTGAACAACTAGTGTACATC
TTTTGTAACATAAATTAAGTAGTACTCCCTCCGTCCCAAATAATTATC---------GGGAGTAGTAAAAGTTATTGCTT
TCAAGAACCCTGGAAGGGTTATCAGGAAAAAAAACTGAAAGGGTTATCTGAAAAAAAAAGGAACCGTGAAAGGGCATGAC
TAAAAGATTTCTCACACATAAATTGTTAACT----------------------------------------------ATT
TGAAAGAAGTACAAGAAGAAAACGCTTA-------------AGTAGACTGACAAGAAAATCAGGTGTTCCCCAAAACAAG
-----AAACCCAGTAAACAATGCGAAAATATCCATGGCGGCTGCTCAATGTTATCAACTCCACATGAGACAAGTTTGCTG
GTTGCGTGCTGCTGGAGCTGAGATGTCGTGCTGTTGGCCGACCAAGAGAAA
>chr2A_87
--------------------------------------------------------------------------------
------TGGAAAAGCAGCAGGCGGGGGTCTCCCGAAACAGAAAATCGCTGCTTCGGCAGCTCGCGGCGCGCCAAAACGGG
GAATCCCT------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----CGTGCACCGGTAGCCCCTCCCTCCCTCCCTCCATCCCTCT------TGCCGCCGGTGGAGCTCGAGA--------
---------AAAACAAGCATTATCCAACGCACCCGGCGCCAACTTGGGCAGAGCGAAACCGAATCGCGAGCCTACTTGGT
CGCGCGCACGTGCCGAAACCCACAGCTGG----------CCCCGGAAAGCGGAAAGGGGCCGGCCGGGCGACCATCACCT
GGACGCCGAT---GCATCGCGGCGTGCGTACTCCTACCCCGCGCGACT-------AGGCGGCCGCTCCTGGACCGCGAAA
AG-----------------------GAAGTCCAAGCGGTTTTGGGCTGGCAATCAAAAGATCTACGTGCAGGGGATCTGG
TATCCATTGCTTGCCCAGTGGCATCGCGTCTG--CCTCCCCATGCCCTCTTGTGCGCCGCTGATCGCTGATTGCTTCCTA
CTTCTTCGTCCTCCGCTCGCCGAGATTCCGCCCTATAAATCCCACTAGCCATCGGAATCCAGATGGAATGCACGCATCCG
AACCATCTTCTTAGAAGAAGAAGATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAA---------------
-----------------------------------------------------TCTTAGCAAAGAGCATGGCGCGCCACC
ACAACCACCA---GCAGCGGGGAGCGGCGGCGGCGGCGGC---GGCATTGCCGGTGATCAACATTGGCCGGCTCGGCGAC
AAGGACCCCGCCGCGCGGGCGCTCGTCGTCCAGGACATCGCCCGGGCGTGCCGCGACCGCGGGTGCTTCCAGGTTCGTGC
CC----TTAGTTGCTCTGCTTCTGCTTGTTACTGCTCCCTCCT--------------GCTCTGCGTCCTCTGGT-----C
CTCGAG--------------CGAACGACACCTCCGCTGCACGGTCAGTTCAGA-AACGGATAGGGTTACAAGTTACACGA
GCTGACGTGGACGCA--------CCCATTTTTATACTGACAG------TGACCTGGCACTAAGTTAACCGTATCCAAAAC
AAGC----GACAAACCATGCATATATATACCGATCGACA-----------------------------------------
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--------------------------------------------------TGCTGACACGTACGTC--------------
---------------CCTGAAGGTGGTAAACCACGGCGTCAGCAAGTCCGCCATGGACGGCGCCCTGGAGGCCGCCTCCG
AGTTCTTCGACTTGCCCGCGGAGCACAAGGCGGCGTTCGCCTGCGACGACATCCGCAGCCCGGTCCGGTACGACACCAGC
TCCCGGGACGGGATCAGCAAGGCCCGGTCCTTCCTCAAGCACTACGCCAATCCCCTCCACCACTGGGTCGACGACTGGCC
AACACAACCGGCAACATACAGGTAGATACTTGGACATCAACTTTTACAAGATCGACCGATGAATCATCCCAGCTTATGAC
CGAACGAATGTTGATCGGCAGGAAGAAGATGGGGACGTACGCCGTGGAGATGCAGAGGCTGTCGGTGCAGCTCATTGGGG
CCATCGTGCAGGGGCTGGGGCTAGACCCAATGTACCTGCAGGAGAAGCTCGGGGCAGGGCTGCAGTTCATCGCCCTGAAC
AACTACCCGCAGGGGTCGTCGCGGGCGGGTGACACGGTCGGGCTGGCGCCGCACTCGGACATCGGCTTCATCACCATCCT
GCTGCAGAGCTCGCCGGGGCTCGAGGTGACGCACCACGACGACGGCGGCGTCTGGACGCCCGTCCCGGCCATCCCGGGGG
CGCTCCACGTCCACCTCGGCGACCACCTGGAGGTGCTGAGCAACGGCCGCCTCCGGTCCCTCCTGCACCGGGCCATCCTC
AACACCGATGAAGCGAGGATCTCCATCGCCAGCATCCACGGCGCGGCGATGGACGAGAAGGTCGGGTGCGCCGACGAGCT
CGTCGACGAGCAACACCCGAGGATGTACAGGGAGAGCAGCTTCCATGACTTCCTCGACTTCCTGCCCACCAACGTCAAGG
CGTACCGGAGGTTCGTTGACACCCTCAAGATCGA---CAGTGCTTAAATGGGAAACAAAATA---TACATTGGTTCAGCT
CCACTAAGACATAAAACATAGCTGAATGAGACTCTGCAGATAAGTGTCCATTTAGTTGTGTCCGTCAGTCTTACTGCTAG
CTGGAGAACAAAATTACTGTTTAATTATGCCTCCATTACCAAGTACTATCTCACTACGAATAAGGGAGTATGGTATTAGC
AGAGCTGGATGGGCGTGTGATTAGCAGGGTGCCTTTTTTTTTTCCTCTCCCTTCCTTTC---TTTGGGGAAATGCAGCAT
GTCTGCATGTCTCTTCCATCAAAAGGAGGATCAAAGGAACCTTGCAAGGTTCTTCCGGTTCTTTG---GTAGTACCTACA
TAA---ACCATGTGTTGGTCAGTTCAGTCCTATGTGTGTGTCAGTTGATTTCACCTATTGAAATTTACTTTCTCATGAGA
TATACT----------------A---ATACAATTTACTGTTTGACATTTGCCTGACAT----------------------
-------------ACTGAGCAAGATAACTCTAGTGTTCTGATTCTGGAGAACTGTTTCTTATGCTTCACATTGAAATTTA
TCATGGCCTTCGATGAAGTTGTTCGAGCATGGTGGTTCCACAACATCTGAAA--------------AACCAGCGTACATC
TTCTGTAACATAAACTAAGTAGTAGTAGTAAATGTAAATGTCCTCGCAAAAAAAAGAGGTAGTAGTAAATGTTATTTCTC
TCAAGAACCATGAAATGGCATGACCA------------------------------------------------------
-AAAACATTTTTCACACATAAACTGTTCACTGTGCTGGGTA---------------------------------------
-GAAAGAGGTACAAGAAGAAAACATTTACAAAATAAGTAGGAGTACATGGACAAGAAAATCAGCTGTTCCTCAAAACAAA
AACAAAAAACCAGCAAACATGCC-AAATTATCTATTGCCTCTGTGG-----TATCAAGTCCACATGAGACAAGTTTGTTG
GTTGCGTGCTGCTGGAGCTGAGATGTCGTGGTGTTGGCCGACCAAGAGA--
>chr2B_451
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----------------------------------------------------GCCGCCCATTCAGTTCCTCCCCACTCTC
-GGCGCGAGAAAACAAGCATTATCCAAGCAAGAGGGCGCCAACTTGGGC-GAGGAAAACGGAATCGCGAGCCTACTTGGT
CACTCGCACACACTGAAACCCACAGCTGGTGGGCACTGCCCC-------CAGAAAGGAACCGGCCCGGCGACCATCACCT
GGACGCAGATACCACATCGCGGCGTACGTACTCCTACGTCCAG---CT-------GGGCGGCTGCTCCTGGACCGGAACC
GCGCGTCGTCCGGCGAGGGCAG-AAGAAATCCAAGCGGTTTTGGGCTGTCAATCAAAAGATCTACGTGCAGGGGATCTGG
TATCCCTTGCTTGCCCGGTGGC----------TACCTCCCATG--CCTCTTGTGTGCTGCCGATCGCTCATTGCTTCCTA
CTTCTTCATCCTCCGCTCGCCGAGATTCCGCCCTATAAATCCCACTAGCGCTCAGAATCCAGATGGAATGCACACACCGG
AAGCATCTT--------------ATTAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCAGCAAGAAGGAACGATATCCGTTC
TGTCTGTTGG------------CGAGGCATGCCTGCTGCCGTCTCCGGGTGCCTCTTGGCGAGGAGCATGGCGAGCCACC
ACAACCACCACCGGCAGCGGGGAG---------------CGGCGGCACTGCCGGTGATCAACATTGGCCGGCTCGGCGAC
AAGGACCCCGCCGCGCGGGCGCTCGTCGTGCAGGACATCGCCCGGGCGTGCCGCGACCGGGGGTGCTTCCAGGTTCGTGT
CGTTCGTTAGCTGCTCTGCTTCTGCCTGTTACTACTAGCTAGTACTACTGCCAGTGCGCTCTGGATCCTCTGGG-----C
CTCGTCCTCGGCCTCTGGCTCCAACGACACCTCAGCTTCCAGGTAGAGCTACTGT--------------AAGTTACACGT
GCTGACGTGGACCAGCG-CATGCCCCGTTTTTATACTGCCGACAGTGATGACCTGGCACTAAGTT---------------
---------------------TATATATACGCCGAGATGCC---------------------------------------
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------------------------------------------------AGTGCTGACACGTACGTACATACCATTCTGCT
GCCTGCCTGAACGGACCTGAAGGTGACAAACCACGGAGTCAGCAAGTCCGCCATGGACAGCGCCCTGGAGGCGGCCTCGG
AGTTCTTCGACATGCCCGCGGAGCGCAAGGCGGCGTTCGCCTGCGACGACATCCGCAGCCCGATCCGGTACGACACGAGC
TCCAGGGACGGCATCAGCAAGGCCAGGTCCTTCCTCAAGCACTACGCCAATCCCCTCGACCACTGGGTCGACTCCTGGCC
AACCCAACCGGCAACATACAGGTACTGCATCATCAATCCGCACAATGGAATCGTCTCCGTTGATAGG--------ATGAC
CGAACAAATGTTGATCCGCAGGAAGAAGATGGGGACGTACGCGGTGGAGATACAGAGGCTGTCAATGCAGCTCATGGGGG
CCATCGTGCAGGGGCTGGGGCTCAGCCCAATGTACCTTGAGGAGAAGCTCGAAGCAGGACTGCAGTTCATGGCGCTCAAC
AACTACCCGCAGGGGTCGTCCCGGGCGGGCGACACGGTCGGGCTGGCGCCGCACTCCGACATCGGCTTCATCACCATCCT
GCTGCAGAGCTCGCCGGGGCTCGAGGTGACGCACCACGACGACGGCGGCGCCTGGACGCCCGTCCCGGTCATCCCGGGGG
CGCTCCATGTCCACCTCGGCGACCACCTGGAGGTGCTCAGCAACGGCCGGCTCCGGTCCCTCCTGCACCGGGCCATCCTC
AACACCGACGAGGCGAGGGTCTCCATCGCCAGCATCCACGGCGCGGCGATGGACGAGAAGGTCGGGTGCGCCGAGGAGCT
CGTCGACGAGGGACACCCGAGGATGTACAGGGAGAGCAGCTTCCATGACTTCCTCGACTTCCTGCCCACCAACGTCAAGG
CGTACCGGAGGTTCGTCGAGACCCTCAAGATCGA---CAGCGCTTAAATGGGAAACAAGTACG--TACATTGGTTCAGCT
CCACTAAGACGTG---CATAGCTGAATGAGACTCTGCAGATAAGTGTCCATTTAGTTCT----GTCAGTCTTACTGCTAG
CTGGAGAACAAAATTACGGTTTAATTATGCCTCCATTATCAAGTA---TCTCAGTACAAATAAGGAAGTGTGGTATTAGC
AGAGCTGGGTAGGCGTGTGATTAGCAGGGTGCTTTTTTTTT---CACTCCATTTCTTTC---TTTGGGGAAATGCAGCAT
GTCTGCATGTCTCTTCCATCAAAAGGAGGGTCAAAGGGACCTTGCAAGGTTCTTCCGGTTCTTTG---GTACCTAC----
--ATACACCATTTGTTGGTCAGTGCAGTCCTATGTGTGTGTCAGTTAATTTCACCTATTGAAATTTACTTTCTCATGAGA
TGTATTGCGCACGACATATATTAAATATACAATTTACTGTTTACCATTTGCTTGGTTTTCTTTATCTGTGCCCAAGCTCA
AAATCTAAGAGAAACTGAGAAAGATAACTCTTGTGTTCTGAATAC------CTGTTTCCTGTGCTTCACATTGAACTTTA
TCATGTCCTTGGATGAAATTGTTCGAGCAAGGTGGTTCCACAGCATCAGGAA--------------AACCAGTGTATATC
TTCTGTAACATAAATTAAGTG----------------------------------------GTAGTAAAAGTTATTGCTT
TCAAGAACCCTAAA--------------------------GGTTTATCTTACAAAAAAACCTA-----AAAGGGCATGAC
CAAAACATTTTTCACACATAAACTGTTAACTACTCATAGTGTCAAAAAACGTCTTGTATTATTGGGACGGAGGGAGTATT
TGGAAGAAGTACAAGAGGAAGACGCTCAGGAAATATGTAG------ACAGACAAGAAAATCAGTTGTTCCCCAAAACAAG
-----AAAACCAGTAAACAATGC-AAAATATCCATAGCGGCTGATGTTATCAACT-AGTACGCATGAGAAAAGTTTGCTG
GTTGCGTACTGCTGGAGCTGAGATGTCGTGCTGTTGGCCGACCAAGAGAAA
>chr2D_708
AAAAGAAAA-----------------------------------------------------------------------
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-------------------------------CAAGCGGTTTTGGGCTCGCATTCAAAAGATCTACGTGCAGGGGATCTGG
TATCCCTTGCTTGCCCGGTGGCATCGCGTCTG--CCTCCCATG--CTTCTTGTGTGCTGCTGATCGCTGATTGCTTCCTG
CTCTG---------------CGAGATTCCGCCCTATAAATCCCACTAGCGCTCGG------------------------G
AACCATCTT-----------------------AGAAGAAGAAGCAGAAGAAGAGCCGGCAAGAAGGAAGGATATCCGTTC
TGTCTGTTGG------------CGATGCATGCCTGCTGCCGTCTCTGGGTGCCTCTTGGCGAGGAGCATGGCGAGCCACC
ACAAAAA-CA---GCAGCTGGGAGGGGCGGCGGTGGCGCCGGGGGCACTGCCGGTGATCAACATTGGCCGGCTCAGCGAC
AAGGACCCCGCCGCGCGGGCGCTCGTCGTCCAGGACATCGCCCGGGCGTCCCGCGACCGGGGATGCTTCCAGGTTCGTG-
---TCGTTAGTTGCTCTGCTTCTGCTTGTTACTCCT--CTCCT--------------GCTCTGCATCCTCTGGTACGGTC
CTCAAG--------------CGAACGACAGCTCCGCTGCACGGTCAGTTCAGAAAAAGGATAGGGTTACAAGTTACACGT
CCTGACGTGGCGCACCCA-----------TTTATACTGACAG------TGACCTGGCACTAAGTTAACTGTTTCCAAAAC
AAGC----GACAAACCATGCATATATATACCGATCAACATGCCAGTGCTTTTTTTAGAAAAGGAGGATGACCCCCGGCCT
CTGCATCTGGGAGATGATGCAGCCACTTTATTGATTATTTTTGGAGACCTTACAAAGTATCACAACAATATGCCTGAATC
CGTCATCTTGGCAACATATGCCACTACTCCTATCCATATGATGAAGGGATGCTAGCTGGGCAAAATACCCAGACCACTCA
CCTAAACCTATCATCAAAAGCCGGAAGCCCTAGCCGAGCCACATACCGGGTCTGGGGCACAAACCGATCTGACGCACTCA
CATGTGTCGTCGCCGCCATCTTTCACAGGTCCGTCTTCAGAGCAGATATTGAGGCTTGTACCTTGTCAGGCCACTCTGCC
ATCGACGCCACCATGACGCCAGACAGCCACCTCCTCCTGCGTGAGTCCATCTACACGCATCGGGCGCCGAGTCTCCGCTG
CGCCATGCCGCCGAGATCCGCCGTCTTTGATGCGGAGGAGGAAACACCGCTCCACCTCTGGGCGCATCGTCGGTAACCTG
TCGCGAGGTCGTGCAAGTCCAGCTCTGGGAAAGCACGCAGGGAATCACGATCTTCAAGACGACGCCCTTAGGAGGGGAAG
CGACGTATCACGCCATCGTGTGGTCCTGCACCGCAGGTCCTGGGCTTTCACCCGAAGAAAGTGACCCGAGAGCGAAGGAG
GTCGGAGAACTCCACAACGGCCCCCAGGAGGAGAGCGACATCCGCAGACACCGCGCCGTCGGCTTTCGCCCGGAGCAACC
CTACCTCCGCACCCTCACGCTGCCGGACGAGCATGGGGGAACCCCGGTGCCGCCAGCATGCGAACCCACTAGCCCAAGCA
CCTCTTGCGCGGCGGCGGCGCCATCACCACGCACAACCACCAACCTCACCGCCGGCCGAAGCTAACGGGCCAGATCGGCC
GAGCCCGCCACGGCCAGATCTGAAACCTCGGGATGCCGTCGCGTCGAGGCAGCCACGAGCAGCCGGCAGCCCATCACCTG
CGAGAGGACGAGGACGCAGCGCCGGGCAGCCGCCACGCCGGCCGAAGACGCCGAGGACGAGACTCCCACCACCACGGGCT
CACGCCGGCAACCTAGGCCGCCGAGAGCGCGGAGATCCCCGCCGCCACCGTCCTCCGGTGTGGGCTTCGCCCGGCGGACT
CACCCGGCGGCGGCGGGAGAGGGGACGTGCTGTAGAGGGGAACGGCGGCGGTGTACCTAGGGTTCCCCCGAGCCGCCCTG
GGGACGACGCGGGGGTCGGGAGGGCACGCGTCTAAAAACTTCAGCTAGCCTAGCTCGTGTTGCTGGCTTCCTGCTAGATA
GGATCCGGCAACCGCCGTTCCTCTGTTCCGGCTCGTATGCTAGTGCTGAGTGCTGACACGTACGTA--------------
---------------CCTGAAGGTGGTAAACCACGGCGTCAGCAAGTCCGCCATGGACGGCGCCCTGAAGGCCGCCTTT-
-----TTCGACATGCCCGCCGAGCGCAAGGCGGCGTTCGCCTGCGACGACATCCGCAGCCCGGTCCGGTACGACACCAGC
ACCCGGGACGGGATCAGCAAGGCCAGGTCCTTCCTCAAGCACTACACCAATCCCTTCGACCACTGGGTCGACTCCTGGCC
AACACAACCGGCAACATACAGGTAAGTACTTGGACATCAACTTTTACAAGATC------------------------GAC
CGAACAAATGCTGATCGGCAGGAAGAAGATGGGGACGTATGCCGTGGAAATACAGAGGCTGTCAATACAGCTCATGGGGG
CCATCGTGCAGGGGCTGGGGCTATGCCCAATGCACCTGCAGGAGAAGCTCGGGGCAGGGCTGCAGTTCATGGCGCTCAAC
AACTATCCGCAGGGGTCGTCACGGGCGGGCGACACAGTCGGGCTGGCGCCGCACTCTGACATCGGCTTCATCACCATCCT
GCTGCAGAGCTCGCCGGGGCTGGAGGTGACGCACCACGACGACGGCGGCGTCTGGACGCCCGTCCCGGTCATCCCGGGGG
CGCTCCACGTCCACCTCGGCGGCCACCTGGAGGTGCTCAGCAACGGCCGGCTCCGGTCCCTCCTGCACCGGGCCATCCT-
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---------------------------------------------------
>chr2D_2158
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--------------------------------------------------------------------------ATCCTC
AATACGGATGAGGTGAGGATCTCCATCGCCAGCATCCACGGCGCGGCGATGGACGAGAAGGTCGGCTGCGCCGACGAGTT
CGTCGACGAGCGCCACCCCAGGATGTACAGGGAGAGCAGCTTCCATGACTTCCTCGACTTCCTGCCCACCAACGTCAAGG
CGTACCGGAGGTTCGTTGAGACCCTCAAGATCGGAGGCAGTGCTTAAACGGGAAACAAGTATTCCTACATTGGTTCAGCT
CCACTAAGACATT---CATAGCTGAATGAGACTCTGCAGATAAGTGTCCATTTAGTTGT----GTCAGTCTTGTTGCTAG
CTGAAGAACCAAATTGCTGTTTAATTATGCCTCCATTACCAAGTA---TCTCAGTACGAATAAGGGAGTATGGTATTAGC
AGAGCTGGATAGGCGTGTGATTAGCAGTGTGCCTTTTTTTT---CTCTCCATTTCTTTTTTTTTTGGGGAAATGCAGTAT
GTCTGCGTGTCTCTTCCATCAAAAGGAGGATCAAAGGAACCTTGCCAAGTTCTTCCGGTTCTCTG---GTGCCTAC----
--A---ACCATGTGTTGGTCAGTGCAGTCCTATATGTGTGTCAGTTTATTTCACCTATTGAAATTTACTTTCTCATGAGA
TATATT--------------------------------------------------------------------------
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---------------------------------------------------
>SNPs
-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------SS---------------------------S--------S---S-----------
S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------S----------------------S--SSS-SSSSSSS-------------------------S-S-
S----------------------------S--------------------------------------------------
-----S--------------------------------------------------------------------------
----S--S-------------------------------S-SS-SSSSSSSSSSS-------------------------
-----------------S-SSSS-------------------SS------------------------------------
---S-----------------S------SSSS------------------------------------------------
----------------------------S---------------------------------------S-----------
-------------------------------------------------------------S----------------SS
SSSS--SSS-SSSSSSSSSSSS----------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------S-----------------------------------------------------
---SS-------S---------------S---------------------------------------------------
----S------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
----SSSS----------------------S--SS--SS-SS--------------------------------------
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------------------------------------------------S-------------------------------
---------------------------------------------S----------------------------------
----S------------------------S--------------------------------------------------
---------S----------------------------------------------------------------------
-S----------------------------------------------------S-SS----------------SS----
-----------------------------------------------------------S------------S-------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-----------S----------------------------------S------S--------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------SS---S---
S--S-------S-----S--------------S-----S-----------------------------------------
---------------------------------------------S------------------------------S---
--------------------------------------------------------------------------------
-----------------------------------------------------------------SSS------------
-----------------S---------------------S------------------S------------------S--
-----------SSSSSSSSS-S-----------------------------------------------------S----
------------------S--------S-SS----------------------S-----------------S--------
-----------S-------------S--------------S-----------SSSSSSSSSSSSSS---S----------
--S---------------------S-SSSSSSSSSSS-SS-SS-SSSS-----------S--------------------
------------S--S--SSSSSSSSSSSSSSSSSSSSSS--S------S-S-------SSS-SSSSS------------
S----S----S-----------S---------------------------------------------------------
---------------------------------------------S--S--------------S----------------
--------S--------------S-----------S-------S-SSSSSS------S----------------------
---------------------------------------------------
>forward_235
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-------------------------------------------------------CGGTTATCAGGTGAGACCCG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_3420
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATGCAGTTCATGGGGCTCAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>forward_1285
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTTCCAGGTTCGTGT
CGTCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_4702
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AACCGTGAAAGGGCATGAC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
