Multiple sequence alignment - TraesCS2D01G534900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G534900 chr2D 100.000 2540 0 0 1 2540 618251418 618248879 0.000000e+00 4691
1 TraesCS2D01G534900 chr2D 91.597 119 6 3 1938 2056 67559224 67559338 7.270000e-36 161
2 TraesCS2D01G534900 chr2A 94.166 2554 127 16 1 2540 749093971 749091426 0.000000e+00 3871
3 TraesCS2D01G534900 chr2A 94.444 108 5 1 1940 2047 416627469 416627575 5.620000e-37 165
4 TraesCS2D01G534900 chr2B 89.077 1593 131 24 1 1583 754867595 754866036 0.000000e+00 1938
5 TraesCS2D01G534900 chr2B 85.681 433 36 12 2117 2540 754865334 754864919 1.400000e-117 433
6 TraesCS2D01G534900 chr2B 89.730 185 15 2 1759 1943 754865536 754865356 1.520000e-57 233
7 TraesCS2D01G534900 chr2B 92.500 160 10 2 1568 1727 754865693 754865536 7.070000e-56 228
8 TraesCS2D01G534900 chr2B 90.909 121 8 3 1939 2059 669438809 669438692 2.620000e-35 159
9 TraesCS2D01G534900 chr6B 94.444 108 5 1 1940 2047 219879450 219879344 5.620000e-37 165
10 TraesCS2D01G534900 chr6B 92.982 114 5 3 1935 2047 315650198 315650309 2.020000e-36 163
11 TraesCS2D01G534900 chr3D 96.078 102 3 1 1943 2044 613073454 613073354 5.620000e-37 165
12 TraesCS2D01G534900 chr7D 94.286 105 5 1 1943 2047 311884574 311884471 2.620000e-35 159
13 TraesCS2D01G534900 chr3A 88.976 127 10 4 1938 2061 75959584 75959459 1.220000e-33 154
14 TraesCS2D01G534900 chr1A 93.939 99 5 1 1944 2042 238868762 238868665 5.660000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G534900 chr2D 618248879 618251418 2539 True 4691 4691 100.000 1 2540 1 chr2D.!!$R1 2539
1 TraesCS2D01G534900 chr2A 749091426 749093971 2545 True 3871 3871 94.166 1 2540 1 chr2A.!!$R1 2539
2 TraesCS2D01G534900 chr2B 754864919 754867595 2676 True 708 1938 89.247 1 2540 4 chr2B.!!$R2 2539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.668706 CTCCAAGAGTCACTGCACGG 60.669 60.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 2102 0.034756 TGCCTCCGCGCAATATGTAT 59.965 50.0 8.75 0.0 35.32 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.601171 CCCAGGCAGTCTCCAAGAG 59.399 63.158 0.00 0.00 0.00 2.85
42 43 0.668706 CTCCAAGAGTCACTGCACGG 60.669 60.000 0.00 0.00 0.00 4.94
75 76 4.020218 CCCCTTTATGCGATCCTTCTCATA 60.020 45.833 0.00 0.00 30.24 2.15
128 129 4.943705 GCATCTCCTCATTTTCCACAAGTA 59.056 41.667 0.00 0.00 0.00 2.24
135 136 6.269077 TCCTCATTTTCCACAAGTACTAGTGA 59.731 38.462 5.39 0.00 37.97 3.41
147 148 3.628487 AGTACTAGTGATGAGAGCCGAAC 59.372 47.826 5.39 0.00 0.00 3.95
148 149 2.447443 ACTAGTGATGAGAGCCGAACA 58.553 47.619 0.00 0.00 0.00 3.18
171 172 7.185565 ACATATGGTACTGGATATAGCAGAGT 58.814 38.462 7.80 0.00 33.80 3.24
173 174 8.535335 CATATGGTACTGGATATAGCAGAGTTT 58.465 37.037 0.00 0.00 33.80 2.66
262 263 1.530293 GCTGAGCTTATGATCCTTGCG 59.470 52.381 0.00 0.00 0.00 4.85
288 289 0.934436 GCACCAAACATGTGTCGTGC 60.934 55.000 20.79 20.79 37.87 5.34
353 354 1.338105 TGCTCGGTGTTCAGATTGAGG 60.338 52.381 0.00 0.00 0.00 3.86
358 359 4.065088 TCGGTGTTCAGATTGAGGAAAAG 58.935 43.478 0.00 0.00 0.00 2.27
364 365 4.371624 TCAGATTGAGGAAAAGAGCCAA 57.628 40.909 0.00 0.00 0.00 4.52
367 368 5.776716 TCAGATTGAGGAAAAGAGCCAAAAT 59.223 36.000 0.00 0.00 0.00 1.82
485 486 1.079057 GTCCTCCCTGAAGAACGCC 60.079 63.158 0.00 0.00 0.00 5.68
487 488 0.909610 TCCTCCCTGAAGAACGCCAT 60.910 55.000 0.00 0.00 0.00 4.40
515 516 2.749621 GCTCAGATTTTCGGGTGTGATT 59.250 45.455 0.00 0.00 0.00 2.57
521 522 3.907894 TTTTCGGGTGTGATTGTAAGC 57.092 42.857 0.00 0.00 0.00 3.09
535 536 1.210478 TGTAAGCTGGAGGAGGATTGC 59.790 52.381 0.00 0.00 0.00 3.56
542 543 1.379642 GGAGGAGGATTGCTTTGCCG 61.380 60.000 0.00 0.00 0.00 5.69
549 550 1.669999 GATTGCTTTGCCGGAGCCAT 61.670 55.000 5.05 2.07 39.38 4.40
553 554 2.745884 TTTGCCGGAGCCATCACG 60.746 61.111 5.05 0.00 38.69 4.35
561 562 1.227263 GAGCCATCACGCGGTGTAT 60.227 57.895 12.47 0.00 34.79 2.29
853 855 3.654321 TGGAGATATCCTGCCATTGACAT 59.346 43.478 8.09 0.00 31.46 3.06
900 902 6.817184 ACTACTTGTTGAGTACAATGACACT 58.183 36.000 0.00 0.00 45.31 3.55
1160 1165 0.464916 GGGAACGACAACCACCAACT 60.465 55.000 0.00 0.00 0.00 3.16
1169 1174 1.102978 AACCACCAACTGCTTGTCAC 58.897 50.000 0.00 0.00 0.00 3.67
1249 1254 1.412710 AGTTGAGTGATCACGGTGTGT 59.587 47.619 19.85 1.13 34.79 3.72
1250 1255 2.626266 AGTTGAGTGATCACGGTGTGTA 59.374 45.455 19.85 0.58 34.79 2.90
1280 1285 5.246981 TCTGTGAATTTCAGTCCAGGATT 57.753 39.130 12.82 0.00 34.86 3.01
1288 1293 3.969287 TCAGTCCAGGATTTGTCTCTG 57.031 47.619 0.00 0.00 0.00 3.35
1560 1565 2.159085 ACAAGGATCAGCGGTAAGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
1580 1585 1.881973 CAGACACACAAATGGAGGTGG 59.118 52.381 0.00 0.00 39.31 4.61
1583 1588 2.489329 GACACACAAATGGAGGTGGATG 59.511 50.000 0.00 0.00 39.31 3.51
1585 1590 1.428912 ACACAAATGGAGGTGGATGGT 59.571 47.619 0.00 0.00 39.31 3.55
1586 1591 2.094675 CACAAATGGAGGTGGATGGTC 58.905 52.381 0.00 0.00 0.00 4.02
1594 1956 3.982730 TGGAGGTGGATGGTCAATCATAT 59.017 43.478 0.00 0.00 36.98 1.78
1616 1978 3.255888 TGTAGCAGAGTATGGCCTATTCG 59.744 47.826 3.32 0.00 0.00 3.34
1711 2073 4.524328 TCAGATTTCAGAGCACTAGACACA 59.476 41.667 0.00 0.00 0.00 3.72
1737 2099 0.251916 TGCCTATACTGGTGTGGTGC 59.748 55.000 0.00 0.00 0.00 5.01
1739 2101 0.180406 CCTATACTGGTGTGGTGCCC 59.820 60.000 0.00 0.00 0.00 5.36
1740 2102 0.908910 CTATACTGGTGTGGTGCCCA 59.091 55.000 0.00 0.00 0.00 5.36
1751 2113 1.266718 GTGGTGCCCATACATATTGCG 59.733 52.381 0.00 0.00 35.28 4.85
1753 2115 0.110238 GTGCCCATACATATTGCGCG 60.110 55.000 0.00 0.00 0.00 6.86
1756 2118 1.078709 CCCATACATATTGCGCGGAG 58.921 55.000 8.83 0.00 0.00 4.63
1757 2119 1.078709 CCATACATATTGCGCGGAGG 58.921 55.000 8.83 0.00 0.00 4.30
1817 2179 4.535781 TGTGTTGATATTGGCCAATAGCT 58.464 39.130 39.25 26.92 39.62 3.32
1939 2301 6.271391 TGGTTTCCTGAGTTCAGATAGGTTAA 59.729 38.462 10.64 0.00 46.59 2.01
1952 2314 8.445361 TCAGATAGGTTAAATAATACTCCCCC 57.555 38.462 0.00 0.00 0.00 5.40
1970 2332 1.004979 CCCCCGTCCCAAAATAAGTGA 59.995 52.381 0.00 0.00 0.00 3.41
1972 2334 2.290705 CCCCGTCCCAAAATAAGTGACT 60.291 50.000 0.00 0.00 0.00 3.41
1976 2338 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1977 2339 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1978 2340 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1981 2343 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1983 2345 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1984 2346 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1990 2352 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
1992 2354 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
1993 2355 9.090692 GTGACTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
1994 2356 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
2001 2363 9.828039 ACTTTGTACTAACTTTGTACTAAAGCT 57.172 29.630 21.28 7.77 39.34 3.74
2015 2377 4.164294 ACTAAAGCTAGTACAAAGTCGCG 58.836 43.478 0.00 0.00 36.56 5.87
2016 2378 2.719426 AAGCTAGTACAAAGTCGCGT 57.281 45.000 5.77 0.00 0.00 6.01
2017 2379 2.259505 AGCTAGTACAAAGTCGCGTC 57.740 50.000 5.77 0.00 0.00 5.19
2018 2380 1.538512 AGCTAGTACAAAGTCGCGTCA 59.461 47.619 5.77 0.00 0.00 4.35
2019 2381 1.647702 GCTAGTACAAAGTCGCGTCAC 59.352 52.381 5.77 0.00 0.00 3.67
2021 2383 2.503920 AGTACAAAGTCGCGTCACTT 57.496 45.000 5.77 6.70 38.30 3.16
2022 2384 3.631145 AGTACAAAGTCGCGTCACTTA 57.369 42.857 12.91 0.00 35.45 2.24
2023 2385 4.170292 AGTACAAAGTCGCGTCACTTAT 57.830 40.909 12.91 7.80 35.45 1.73
2024 2386 4.553323 AGTACAAAGTCGCGTCACTTATT 58.447 39.130 12.91 6.45 35.45 1.40
2025 2387 4.986659 AGTACAAAGTCGCGTCACTTATTT 59.013 37.500 12.91 4.34 35.45 1.40
2026 2388 4.806342 ACAAAGTCGCGTCACTTATTTT 57.194 36.364 12.91 0.00 35.45 1.82
2027 2389 4.523813 ACAAAGTCGCGTCACTTATTTTG 58.476 39.130 12.91 10.68 35.45 2.44
2088 2460 5.119279 CCTTCACTGTTCTGTTATCAACTCG 59.881 44.000 0.00 0.00 0.00 4.18
2322 2700 7.378461 ACAGAATATACAGCAACAAAAACAACG 59.622 33.333 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.972883 GTGACTCTTGGAGACTGCCT 59.027 55.000 1.31 0.00 33.32 4.75
17 18 0.972883 AGTGACTCTTGGAGACTGCC 59.027 55.000 1.31 0.00 33.32 4.85
42 43 0.105408 CATAAAGGGGGCAATGCAGC 59.895 55.000 7.79 0.00 0.00 5.25
75 76 4.335735 TCCAAGTTGGGGATTGATGAAT 57.664 40.909 21.85 0.00 38.32 2.57
128 129 2.447443 TGTTCGGCTCTCATCACTAGT 58.553 47.619 0.00 0.00 0.00 2.57
135 136 3.898123 AGTACCATATGTTCGGCTCTCAT 59.102 43.478 1.24 0.00 0.00 2.90
147 148 7.652524 ACTCTGCTATATCCAGTACCATATG 57.347 40.000 0.00 0.00 0.00 1.78
148 149 8.671987 AAACTCTGCTATATCCAGTACCATAT 57.328 34.615 0.00 0.00 0.00 1.78
171 172 3.554934 ACTTTCTCCATGCACACAGAAA 58.445 40.909 12.75 12.75 34.47 2.52
173 174 2.936919 ACTTTCTCCATGCACACAGA 57.063 45.000 0.00 0.00 0.00 3.41
262 263 1.078988 CATGTTTGGTGCATGGCCC 60.079 57.895 0.00 0.00 39.82 5.80
288 289 0.788391 GTGGCGTGTTTCTCCGTAAG 59.212 55.000 0.00 0.00 0.00 2.34
353 354 4.245660 GCTGGGTTATTTTGGCTCTTTTC 58.754 43.478 0.00 0.00 0.00 2.29
358 359 1.134995 GCTGCTGGGTTATTTTGGCTC 60.135 52.381 0.00 0.00 0.00 4.70
364 365 1.273327 GTTGCTGCTGCTGGGTTATTT 59.727 47.619 17.00 0.00 40.48 1.40
367 368 0.890542 CAGTTGCTGCTGCTGGGTTA 60.891 55.000 17.00 0.00 40.48 2.85
412 413 8.498054 TCCACATTTTCTGATTCTTCTCATAC 57.502 34.615 0.00 0.00 0.00 2.39
515 516 1.210478 GCAATCCTCCTCCAGCTTACA 59.790 52.381 0.00 0.00 0.00 2.41
521 522 1.101331 GCAAAGCAATCCTCCTCCAG 58.899 55.000 0.00 0.00 0.00 3.86
535 536 2.753966 CGTGATGGCTCCGGCAAAG 61.754 63.158 0.00 0.00 42.43 2.77
542 543 2.644555 ATACACCGCGTGATGGCTCC 62.645 60.000 4.92 0.00 36.96 4.70
549 550 0.033642 TTGTCCAATACACCGCGTGA 59.966 50.000 4.92 0.00 38.00 4.35
553 554 1.472480 AGCAATTGTCCAATACACCGC 59.528 47.619 7.40 0.00 38.00 5.68
561 562 1.001487 CAACTGCGAGCAATTGTCCAA 60.001 47.619 10.63 0.00 29.78 3.53
853 855 7.613585 AGTTCAATAAAAATGATGACATGGCA 58.386 30.769 2.18 2.18 36.79 4.92
900 902 7.400627 TCCACACGGGGTAATATATGATTGATA 59.599 37.037 0.00 0.00 37.22 2.15
1126 1128 2.093181 CGTTCCCCATGGACATACTCAA 60.093 50.000 15.22 0.00 41.57 3.02
1160 1165 2.203139 CCACCCGTGTGACAAGCA 60.203 61.111 0.00 0.00 45.76 3.91
1169 1174 1.358725 CGCATACTGTTCCACCCGTG 61.359 60.000 0.00 0.00 0.00 4.94
1270 1275 4.324099 CCATTCAGAGACAAATCCTGGACT 60.324 45.833 0.00 0.00 0.00 3.85
1280 1285 6.072286 GCTTTTTCTCATCCATTCAGAGACAA 60.072 38.462 0.00 0.00 38.07 3.18
1288 1293 6.860080 TCTTCATGCTTTTTCTCATCCATTC 58.140 36.000 0.00 0.00 0.00 2.67
1324 1329 5.513267 GGACCCTGCTTATTTCTCCGAATAT 60.513 44.000 0.00 0.00 0.00 1.28
1325 1330 4.202326 GGACCCTGCTTATTTCTCCGAATA 60.202 45.833 0.00 0.00 0.00 1.75
1560 1565 1.881973 CCACCTCCATTTGTGTGTCTG 59.118 52.381 0.00 0.00 0.00 3.51
1580 1585 6.462500 ACTCTGCTACATATGATTGACCATC 58.538 40.000 10.38 0.00 0.00 3.51
1583 1588 6.815641 CCATACTCTGCTACATATGATTGACC 59.184 42.308 10.38 0.00 0.00 4.02
1585 1590 6.401394 GCCATACTCTGCTACATATGATTGA 58.599 40.000 10.38 0.00 0.00 2.57
1586 1591 5.583854 GGCCATACTCTGCTACATATGATTG 59.416 44.000 10.38 0.01 0.00 2.67
1594 1956 3.255888 CGAATAGGCCATACTCTGCTACA 59.744 47.826 5.01 0.00 0.00 2.74
1616 1978 6.525629 ACACTAGTACATGATTAATGAGGCC 58.474 40.000 0.00 0.00 38.72 5.19
1711 2073 3.055819 CACACCAGTATAGGCAGTTGTCT 60.056 47.826 0.00 0.00 0.00 3.41
1737 2099 1.078709 CTCCGCGCAATATGTATGGG 58.921 55.000 8.75 0.00 0.00 4.00
1739 2101 0.443869 GCCTCCGCGCAATATGTATG 59.556 55.000 8.75 0.00 0.00 2.39
1740 2102 0.034756 TGCCTCCGCGCAATATGTAT 59.965 50.000 8.75 0.00 35.32 2.29
1751 2113 0.673022 GATCCTCATGATGCCTCCGC 60.673 60.000 0.00 0.00 32.41 5.54
1753 2115 1.003349 CCTGATCCTCATGATGCCTCC 59.997 57.143 0.00 0.00 32.41 4.30
1756 2118 3.436577 AATCCTGATCCTCATGATGCC 57.563 47.619 0.00 0.00 33.12 4.40
1757 2119 4.583489 ACAAAATCCTGATCCTCATGATGC 59.417 41.667 0.00 0.00 33.12 3.91
1817 2179 1.003118 AGTGCTTTATTCGCAGGTCCA 59.997 47.619 0.00 0.00 38.19 4.02
1819 2181 1.666189 GGAGTGCTTTATTCGCAGGTC 59.334 52.381 0.00 0.00 38.19 3.85
1952 2314 3.007635 GAGTCACTTATTTTGGGACGGG 58.992 50.000 0.00 0.00 33.84 5.28
1957 2319 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
1966 2328 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
1967 2329 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
1992 2354 5.106555 ACGCGACTTTGTACTAGCTTTAGTA 60.107 40.000 15.93 0.00 0.00 1.82
1993 2355 4.164294 CGCGACTTTGTACTAGCTTTAGT 58.836 43.478 0.00 0.00 0.00 2.24
1994 2356 4.164294 ACGCGACTTTGTACTAGCTTTAG 58.836 43.478 15.93 0.00 0.00 1.85
1997 2359 2.030540 TGACGCGACTTTGTACTAGCTT 60.031 45.455 15.93 0.00 0.00 3.74
1998 2360 1.538512 TGACGCGACTTTGTACTAGCT 59.461 47.619 15.93 0.00 0.00 3.32
1999 2361 1.647702 GTGACGCGACTTTGTACTAGC 59.352 52.381 15.93 0.00 0.00 3.42
2000 2362 3.198863 AGTGACGCGACTTTGTACTAG 57.801 47.619 15.93 0.00 0.00 2.57
2001 2363 3.631145 AAGTGACGCGACTTTGTACTA 57.369 42.857 15.93 0.00 31.92 1.82
2002 2364 2.503920 AAGTGACGCGACTTTGTACT 57.496 45.000 15.93 2.36 31.92 2.73
2003 2365 4.898328 AATAAGTGACGCGACTTTGTAC 57.102 40.909 15.93 0.00 37.38 2.90
2005 2367 4.523813 CAAAATAAGTGACGCGACTTTGT 58.476 39.130 15.93 2.81 37.38 2.83
2006 2368 3.906008 CCAAAATAAGTGACGCGACTTTG 59.094 43.478 15.93 12.09 37.38 2.77
2008 2370 2.482721 CCCAAAATAAGTGACGCGACTT 59.517 45.455 15.93 16.12 39.54 3.01
2010 2372 2.070783 TCCCAAAATAAGTGACGCGAC 58.929 47.619 15.93 7.62 0.00 5.19
2011 2373 2.070783 GTCCCAAAATAAGTGACGCGA 58.929 47.619 15.93 0.00 0.00 5.87
2013 2375 1.129811 CCGTCCCAAAATAAGTGACGC 59.870 52.381 4.94 0.00 45.37 5.19
2014 2376 2.671396 CTCCGTCCCAAAATAAGTGACG 59.329 50.000 0.00 0.00 46.05 4.35
2015 2377 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2016 2378 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2017 2379 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2018 2380 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2019 2381 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2021 2383 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2022 2384 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2023 2385 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2024 2386 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2025 2387 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2026 2388 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2027 2389 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2033 2405 7.365741 CAAATAATGCAATCATGTACTCCCTC 58.634 38.462 0.00 0.00 32.23 4.30
2308 2686 4.376450 TGTGTTTCGTTGTTTTTGTTGC 57.624 36.364 0.00 0.00 0.00 4.17
2434 2812 7.930513 AGTGCTTTTCAAAACTTATTGCTAC 57.069 32.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.