>input_sequence_76855
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-----------------------------------------ATGTTGCTCGCTCGTTTGCAGCTGAAGGTTGAGGAGAAT
GCTGAGTCTTACGAGGACGAGCGCATGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGCTTAAAGGCTCAGGGTC
TCCCGATTTGAGTATGTCCATGGGGAACGAC---AACCACCAACTGCTTGTCACACGGGTGGAACAGTATGCGACAGCTT
ACCTTCGAGCATCATGGACTGGAGCTCTGCTTCAGTTGAGTGATCACGGTGTGTATAAATATTCTGTGAATTTCAGTCCA
GGATTTGTCTCTGAATGGATGAGAAAAAGCATGAAGAATTTCAATTCGATATTCGGAGAAATAAGCAGGGTCCAAACGAC
ATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAGCGCTTATCGCACAC
ATTTAGGAAGGTATGGCTGCTATCTGGGGAAAAATCCAAGCAAGTACGTAAAGTACACTCCTGACGACATAGAGAATCAT
GTTTTGGACCTGTTCGAAGGTTAA--------------------------------------------------------
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>chr2D_1_TraesCS2D01G534900
CATATTTATACCCCCCAGGCAGTCTCCAAGAGTCACTGCACGGCTGCATTGCCCCCTTTATGCGATCCTTCTCATATTCA
TCAATCCCCAACTTGGAAGATCTCAGCATCTCCTCATTTTCCACAAGTACTAGTGATGAGAGCCGAACATATGGTACTGG
ATATAGCAGAGTTTCTGTGTGCATGGAGAAAGTACACATGTATCTGATTGACCCTGAAGCTTCAATCTTGCTAAAGGAGA
TTGCTGAGCTTATGATCCTTGCGGGCCATGCACCAAACATGTGTCGTGCTTACGGAGAAACACGCCACAACATGTTAATG
CAATGCCTTTCTCTGCTCGGTGTTCAGATTGAGGAAAAGAGCCAAAATAACCCAGCAGCAGCAACTGCTAACGGTGCATG
CAGCATGCAGCTGTATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCTGAAG
AACGCCATGCTTGCGCTCAGATTTTCGGGTGTGATTGTAAGCTGGAGGAGGATTGCTTTGCCGGAGCCATCACGCGGTGT
ATTGGACAATTGCTCGCAGTTGGAAGTATGATGACCAATGTCAAAGTGAATGACCAGCAATATCATAAAGTACCCCTACT
TCTACAGATGCATGAGGAATTGGTAAAGCTTCAACCAAGTATAAATGTCCTCTTGTCTGGTGATGCCAAGGGTGTGATTA
GTGAGCAGGCCAGTATGCTTCTCGATAAGCTTGGAGAAGAA-CATCAAGTCTCCTTCTGGAGTTCCTGAATGTATATTCT
AACCTTAAACCATGCCAACATAAAGTACTTGATGGAGATATCCTGCCATTGACATGCCATGTCATCATTTTTATTGAACT
ACTTGTTGAGTACAATGACACTATCAATCATATATTACCCCGTGTGGAGGACGACGATGAGGGGAAGGGGAAGGAGGAGA
GCACAAAGAGAACTAAGAGTCGCTGGGAACGTTATGTGCTCATGTTGCTCGCTCGTTTGCAGCTGAAGGTTGAGGAGAAT
GCTGAGTCTTACGAGGACGAGCGCATGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGCTTAAAGGCTCAGGGTC
TCCCGATTTGAGTATGTCCATGGGGAACGAC---AACCACCAACTGCTTGTCACACGGGTGGAACAGTATGCGACAGCTT
ACCTTCGAGCATCATGGACTGGAGCTCTGCTTCAGTTGAGTGATCACGGTGTGTATAAATATTCTGTGAATTTCAGTCCA
GGATTTGTCTCTGAATGGATGAGAAAAAGCATGAAGAATTTCAATTCGATATTCGGAGAAATAAGCAGGGTCCAAACGAC
ATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAGCGCTTATCGCACAC
ATTTAGGAAGGTATGGCTGCTATCTGGGGAAAAATCCAAGCAAGTACGTAAAGTACACTCCTGACGACATAGAGAATCAT
GTTTTGGACCTGTTCGAAGGTTAACAAGGATCAGCGGTAAGTAGCAGACACACAAATGGAGGTGGATGGTC---------
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----------------------------AATCATATGTAGCAGAGTATGGCCTATTCGGCCTCATTAATCATGTACTAGT
GTACATGTACATCTGTAATGTATTTTGTGCTTATATATTGATCAATGATTCAGATTTCAGAGCACTAGACACAGACAACT
GCCTATACTGGTGTGGTGCCCATACATATTGCGCGGAGGCATCATGAGGATCAGGATTTTGTTGTATAAACCATGTTGTG
TTGATATTGGCCAATAGCTGGACCTGCGAATAAAGCACTCCACATATCTCTCCCTTCTCGCCCCGCCATCTCACTTTTGC
TCTTTTATAATTGGATCTCTCATGTGTTGGATTTCTGGTTTCCTGAGTTCAGATAGGTTAAATAATACTCCCCCCCGTCC
CAAAATAAGTGACTCAACTTTGTACTAACTTTGTACTAAAGCTAGTACAAAGTCGCGTCACTTATTTTG----------G
GACGGAGGGAGTACATGATTGCATTATTTGGGTACCCTTCACTGTTCTGTTATCAACTCGCAAGTTGCACAGACTGCCAC
TTTGTTGCACATTTGACGTTTAATCAGCTCATTCCATGCATATAATTTTGTACCACC-----GAGCACTCATGTGCTTG-
TTTGCAGGCTCCTTCATTCCTTACTTTCATGCCTATTATCATTCCAATGCCGCAGCTCACACCGGCCCAACATGGTCTGC
TCGCCCAAACATCACAGTTTATCCTACAGAACAACAGAATATACAGCAACAAAAACAACGAAACACAAAAATAAAATTAT
TCCAATCATTTACATAACTATATACAATCAGTATCCCAAATATACATACTGCTCACAAATTACAAGTAGATTCATACCGA
AAACAGAAGCGGTAGCAATAAGTTTTGAAAAGCACTACAGGTAACAGGAAGAG---CAATAGAACAGTCACATTGAAACA
CCATCTTTGGTAGTATATATGCACAGGCACAAACATCAGC
>chr2A_1
CATATTTATACCCCCCTAACAGTCTCCAAGAATCACTGCACGACTGCATTGCCCCCTTTATGCGATCCTTCTCATTTTCA
TCAATCCCCAACTTGGAAGATCTCAGCTTCTCATCATTTTCCACAAGTCCTAGTGGTGAGAGCCGAAGTTATGGTACTGG
ATATAGCAGCGGTCCTGTGTGCATGGAGAAAGTACACATGTATCTGATTGACCCTGAAGCTTCGATCTATCTAAAGGAGA
TTGCTGAGCTTATGATACTTGCTGGCCATGCACCAAACATGTGTCGTGATTACGGAGAAACACGCCACAACATGTTAATG
CAATGCCTTTCTCTGCTCGGTGTTCAGATTGAGCAAAAAAGCCACAACAACCAAGCAGAAGCAACTGCCAATGGCGCATG
CAGCATGCAGCTATATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCTGAAG
AACGCGACGCTTGCGCTCAGATTTTCGGGTGTGATCGTAAGGTGGAGGAGGATTGTTTTGCCAGAGCCACCACAGGGTGT
ACTGGACAATTGCTCGCAGTTGGAAGTATGATGACCAATGTCAAAGTGAATGACCAGCAATATCATAAAGTACCCCTGCT
TCTACAGATGCATGAGGAATTGGTAAAGCTTCAACCAAGTATAAATGTCCTCATGTCTGGTGATGCCAAGGGTGTGATTA
GTGAGCAGGCCAGTTTGCTTCTAGATAAGCTTGGGGAAGAAGCATCAAGTCTCCTTCTGGAGTTCCTGAATGTATATTCT
AACCTTAAACCATGCCAACATAAAGTACTTGATGGAGATATCCTGCCATTGACACGCCATGTCATCATTTTTATTGAACT
ACTTGTTGAGTACAATGACACGATCAATCATATATTACCCCGTGTGGAGGACGACGATGAGGGGAAGGGGAAGGAGCAGA
GCACAAAGAGAACTAAGAGTCGCTGGGAACGTTATGTGCTCATGTTGCTCGCTCGTTTGCAGCTGAAGGTTGAGGAGAAT
GCTGAGTCTTACGAGGACGAGCGCATGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGGTTAAAGGCTCAGGGTC
TCCCGATCTGAGTATGTCCATGGGGAACGAC---AACCACCAACAGCTTGTCATACGGGTGGAACAGTATGCGACAGCTT
ACCTTCGAGCATCATGGACTGAAGCTCTGCTTCAGTTGAGTGATCACGGTGTGAGTAAATATTCTGTGAATTTCGGTCCA
GGATCTGTCTCTCAATGGATGAGAAAAAGCATGAAGAATTTCAATTCGGCATTCGGAGAAATAAGCAGGGTCCAAACGAC
ATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAACGCTTATCGCACAC
TTTTAGGAAGGTATGACTGCTGTCTGGGAAAAAATCCAAGCAAGTACATAAAGTACACTCCTGACGACATAGAGAATCAT
GTTTTGGACCTGTTCGAAGGTTAACAAGGATCAGCGGTAAGTAGTAGACACACAAATGG---------------------
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-----------------AGGTGGATGATAATCATACGTAGCAGAGTATGGCCTATTCAGCCT-ATTAATCATGTACTAGT
GTACATGTACATCTGTAATATATTTTGTGCTTATATATTGATCAATGATTCAGATTTCAGAGAAGTAGACACGGACAACT
GCCTATACTGGTGTGGTGTC--TACATATTGCACCGACACATCATGAGGATCAAAATTTTGTTGTACAAACCCTGTTGTG
TTGATATTGGCCAATAGCCGAACTTGCGAATAAAGTACTCCACATATCTCTCCCTTCTCGCCCCGCCATCTCACTTTTGC
TCTTTTATAATTGGATCTCTCATGTGTTGGATTTCTGGTTTCCTGAGTTCAGATAGGTTACATAGTACT-CCCTCCGTTC
GGAATTACTTGTCGCAAAAATGGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATTTCCAAGACAAGTAATTCCG
GACGAAGGGAGTACATGATTGCATTATTTGGGTACCCTTCACTGTTCTGTTATCAACTCACAAGTTGCACAGACTGCCAC
TTTGTTGCACATTTGACATTTAATCAGCTCATTCCATGCATATAATTTTGTACCACC-----GAGCACTCATGTGCTTG-
TTTGCAGGCTCCTTCATTCCTTACTTTCATGCCTATTATCATTCCAATGCCGCAGCTCACACCGTCCCAACATGGTCTGC
TCGCCCAAACATCACAGTTTATCCTACAGGACAACAGAATATACAACAACAAAAACAACAGAACACAAAAATAAAATTAT
TCCAATCATTTACATAACTATATACAATCAGTATCCCAAATATACATACTGCTCACAAATTACAAGTAGATTCATACCGA
AAACAGAAGCACTAGCAATAGGTTTTGAAAAGCACTACAGGTAACAGGAAGAG---CAATAGAACAGTCACATTGAAACA
CCATCTCTGGTGGTATATATGCACAGGCACAAACATCAGC
>chr2B_1
CATATTTACA-CCCCCTAGCAGTCTCCAAGATTCACTGCACAACTGCATTGCCCCCTTTATGCGATCCTTCTCATTTTCA
TCAATCCCCAACTTGGAAGATCTCAGCATCTCCTCATTTTCCACAAGTCCTAGTGGTGAGAGCCGAAGTTATGGTACTGG
ATATAGCAGAGGTCCTGTGTGCATGGAGAAAGTGCACATGCATCTGATTGACCCTGAAGCTTCAATCTTGCTAAAGGAGA
TTGCTGAGCTTATGATCCTTGCTGGCCATGCACCAAACATATGTCGTGATTACGGAGAAACACGCCACCACATGTTAATG
CAATTCCTTTCTCTGCTCGGTGTTCAGATTGAGCAAAAAAGCCACAACAACCCAGCAGCAGCAACTGCTAACGGCGCATG
CAGCATGCAGCTATATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCTGAAG
AACGCGACGCTTGCGCTCAGATTTTCGGGTGTGATCATAAGGTGGAGGAGGATTGTTTTGCCAGAGCCACCACACGGTGT
ACTGGAGAATTGCTCGCAGTTGGAAGTATGATGGCCAGTGTCAAAGTGAATGACCAGCAGTATCATAAAGTTCCCCTACT
TCTACAGATGCATGAAGAATTTACAAAGCTTGAACCGAGTATAAGTGGCCTCTTGTCTGGTGATGCCAAGGGTGTGATTA
GTGAGCAGGCCAGTATGCTTCTCGGTAAGCTTGGGGAAACCGCATCGAATCTCCTTCTGGAGTTCCTGAATGTATGTTCC
AACCTTGAACCATGCCAAAATACAATGCTTGATGGAGATATCCTGCCATTGACACGACATGTCATGGGTTTTGTCGAACA
ACTTAATGAGTACAGTGACACGATCAATCTTATATTATTACTCGTT---------------GTGGATGAGGAGGAGGAGG
ACAAAGAGATAACTAAGAGTCCTTGGGAACGCTATATGCTCATGCTGCTCGCACGTTTGCAGGTGAAGGTTGAGGAGAAA
GCTGAATCTTACAAGGATGAGCGCCTGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGCTTAAAGGCTCAGGGTC
TTCCGATCTGAGTATGTCCGTGTGGGACGATTGGAACCGCCAACAGCTTGTCGTACGGGTGGAACGGTATGCGACAGCTT
ACCTTCGAGCATCATGGACTGGAGCTCTGTTTCAGTTGAGTGATCAAGTTGTGCCGAGCGACCATATGAGATACGAAACC
AACTGGGTGAAA-----------AAAGAACTTTAAGAGTTTCAATTCGGCACTCGGAGAAATAAGCAGGGTCCAAACGAC
ATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAACGCTTATCGCACAC
ATTTAGGAAGGTATGGCTGCTATCTGGGGAAAAATCCAAGCAAGTACGTAAAGTACACTCCTGACGACATAGAGAATCAT
GTTTTGGACCTGTTCGAAGGATAACAAGGATTAGCGGTAAGTAGTAGACACACAAATGCAGGTGCATAGCTGGACCGAGC
AAGGTTGATGCATCAGTACAGTTCTGAAGATGGAGCGGTGGCAGTTGGCGGCGGCGGCCTCTGAGTGCACGCCGGACCGG
TGAGACCCATGCCCGGCAGGCGTCCTGGATGGGACCTCAGGTCTTAGATGTTAGGTTTGGCTGCGATGTCTGTTTGGTAT
TAGGCCCAGGCTATCTGCGCCCCTTCATCAACTGGATAGAGTTGCTTAGACGGCGGCTTTAGTCTTACTGTTGTATTCCT
TTGTAAGGTCTTGTGAGAATAATTAATAAAGTGGCTGTATGCATCGCCCAGATGCAGAGGCCGGGGGTCATCCTCCTTTT
CTAAAAAAAACAAATGCAGGTGGATGATAATCATACGTGGCAGAGTATGGCCTATTCAGCCT-ATTAATCATGTACTAGT
GTACATGTACATCTGTAATATATTTTGTGCCTATATATTGATCAATAATTCAGATTTCAGAGCACTAGACACGGATAACT
GCCTATA--------------------------------CATCATGAGGATCAGGATTTTGTTGTATAAACCATGTTGTG
TTGATATTGGCCAATAGCCGAACCTGCGAATAAATCGCTCCACATCTCGTTCCCTTCTCGGTCCGCCGTCTCACTTTGTT
G-TTTTACAATTGGATCTCTCATGTGCTGGATTTCTG---TCCTGAGTTCAGATAGGTTACATA----------------
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-------------CATGATTGCATGATTTGGGCA----------------------------------------------
-------CACATTTGACGTTTAATCAGCTCATTCCGTGCATATAAAATTGTACCACCAAGGTGAGCACTCATGTGCTTGC
TTTGCAGGCTCCTTCATTCCTTCCTTTCATGCCTATTAACATTCCAATACCACAGCTCACACCAGCCCAACATAGTCTGC
TCGCCCAAACATTACAGTTTATCCAACAGAACAACAGAATATACAACAGGAAAATCCAAAAAAAAA--------------
TCCAATCATTTACATAACTGTATACAACCAGTATCCCCAATATACGTGCTGCTCACAAATTACAAGTAGATTCATACCAA
AACCAAAAGTGCTAGCAATAAATTTTGAAAAGCACTATATGTAACATGAAGGGCAACAAAGGAACAGTCACACTGAAACA
CCATCTTTGGCAGTAATCCAGATA---CACAAACATCAGC
>SNPs
----------------SS-------------S----------S--------------------------------S----
------------------------------------------------S------S-----------SS-----------
-----------S-S------------------------------------------------------------------
----------------------S-------------------------S-------------------------------
---------------------------------S----S-----S--S--------------------------S-----
------------S-------------------------------------------------------------------
-----S-S---------------------------S-----S-------------S------S------S---S------
-S------------------------------------------------------------------------------
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----------------------------------S---------------------------------------------
------------------------------------------------------S-------------------------
---------------------S----------------------------------------------------------
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-------S------------------------------------S--------S--------------------------
-----------------------------------------------------SS-------------------S-----
----S-------S-----------------------------------SS------------------------------
-----------------------------------------------------------------S--------------
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--------------------------------------------S-------------------S--S-SS---------
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-----------------------------------S---------------------S----S-----------------
-------------------S----------------------------------------------------S-------
------------------S-SS----------S-S--SS-----------------------------------------
------------------S-S-----------------------------------------------------------
------------------------------------------------------------S---S----S---S----S-
SS--S--SS--S-S---SSS--S-SSS-SS-S-SSS--SSSSSSS-SS-S-SS-SSSSSSS-SSSSSSS-----------
----S------------------------------------------------------S--------------------
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---------------------------------------------S-------------S--------------------
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-----------S--------------------------------------------------------------------
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>forward_43
-----------------------CTCCAAGAGTCACTGCACGG-------------------------------------
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>reverse_2102
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---------------------ATACATATTGCGCGGAGGCA---------------------------------------
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