Multiple sequence alignment - TraesCS2D01G523200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G523200 chr2D 100.000 2439 0 0 1 2439 612183672 612186110 0.000000e+00 4505.0
1 TraesCS2D01G523200 chr2D 94.012 501 22 3 228 726 612324562 612325056 0.000000e+00 752.0
2 TraesCS2D01G523200 chr2D 85.534 712 46 24 784 1474 612325151 612325826 0.000000e+00 691.0
3 TraesCS2D01G523200 chr2B 84.457 1557 132 46 784 2313 746680317 746681790 0.000000e+00 1434.0
4 TraesCS2D01G523200 chr2B 83.743 935 72 41 602 1499 747076802 747077693 0.000000e+00 811.0
5 TraesCS2D01G523200 chr2B 90.036 552 27 7 59 609 747076139 747076663 0.000000e+00 689.0
6 TraesCS2D01G523200 chr2B 85.299 551 39 17 58 604 746679415 746679927 4.620000e-147 531.0
7 TraesCS2D01G523200 chr2B 83.571 140 8 3 602 726 746680083 746680222 1.530000e-22 117.0
8 TraesCS2D01G523200 chr2B 86.301 73 10 0 2090 2162 246271476 246271404 2.010000e-11 80.5
9 TraesCS2D01G523200 chr2A 78.767 1022 114 61 216 1148 744407804 744408811 7.510000e-165 590.0
10 TraesCS2D01G523200 chr2A 90.476 210 13 3 1238 1444 744408845 744409050 1.110000e-68 270.0
11 TraesCS2D01G523200 chr3D 76.293 232 48 7 1920 2147 584470229 584470457 1.530000e-22 117.0
12 TraesCS2D01G523200 chr4A 71.175 451 121 9 1583 2027 722017482 722017035 1.190000e-18 104.0
13 TraesCS2D01G523200 chr3B 96.875 32 1 0 1602 1633 566795215 566795246 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G523200 chr2D 612183672 612186110 2438 False 4505.0 4505 100.000000 1 2439 1 chr2D.!!$F1 2438
1 TraesCS2D01G523200 chr2D 612324562 612325826 1264 False 721.5 752 89.773000 228 1474 2 chr2D.!!$F2 1246
2 TraesCS2D01G523200 chr2B 747076139 747077693 1554 False 750.0 811 86.889500 59 1499 2 chr2B.!!$F2 1440
3 TraesCS2D01G523200 chr2B 746679415 746681790 2375 False 694.0 1434 84.442333 58 2313 3 chr2B.!!$F1 2255
4 TraesCS2D01G523200 chr2A 744407804 744409050 1246 False 430.0 590 84.621500 216 1444 2 chr2A.!!$F1 1228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.036483 TGCTGCAGAAACCGATAGCA 60.036 50.0 20.43 1.08 38.68 3.49 F
51 52 0.098376 GCATACAGTGAGCAGCAAGC 59.902 55.0 0.00 0.00 46.19 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1585 0.102120 CTCTCATCAGTGACTCCGGC 59.898 60.0 0.0 0.0 0.00 6.13 R
1527 1885 0.166814 ACGCAGGTACTCGTCGTAAC 59.833 55.0 0.0 0.0 37.58 2.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.885777 GCAATAGAGACGTTGCTGC 57.114 52.632 0.48 0.00 45.41 5.25
21 22 1.078709 GCAATAGAGACGTTGCTGCA 58.921 50.000 0.00 0.00 45.41 4.41
22 23 1.061711 GCAATAGAGACGTTGCTGCAG 59.938 52.381 10.11 10.11 45.41 4.41
23 24 2.610433 CAATAGAGACGTTGCTGCAGA 58.390 47.619 20.43 0.00 0.00 4.26
24 25 2.995939 CAATAGAGACGTTGCTGCAGAA 59.004 45.455 20.43 2.96 0.00 3.02
25 26 2.812358 TAGAGACGTTGCTGCAGAAA 57.188 45.000 20.43 11.53 0.00 2.52
26 27 1.221414 AGAGACGTTGCTGCAGAAAC 58.779 50.000 25.49 25.49 0.00 2.78
27 28 0.235926 GAGACGTTGCTGCAGAAACC 59.764 55.000 28.32 17.06 29.56 3.27
28 29 1.082756 GACGTTGCTGCAGAAACCG 60.083 57.895 28.32 24.11 29.56 4.44
29 30 1.495584 GACGTTGCTGCAGAAACCGA 61.496 55.000 28.32 3.47 29.56 4.69
30 31 0.884704 ACGTTGCTGCAGAAACCGAT 60.885 50.000 28.32 13.78 29.56 4.18
31 32 1.075542 CGTTGCTGCAGAAACCGATA 58.924 50.000 28.32 0.00 29.56 2.92
32 33 1.061131 CGTTGCTGCAGAAACCGATAG 59.939 52.381 28.32 12.68 29.56 2.08
33 34 1.086696 TTGCTGCAGAAACCGATAGC 58.913 50.000 20.43 0.00 0.00 2.97
34 35 0.036483 TGCTGCAGAAACCGATAGCA 60.036 50.000 20.43 1.08 38.68 3.49
35 36 1.303309 GCTGCAGAAACCGATAGCAT 58.697 50.000 20.43 0.00 34.35 3.79
36 37 2.158971 TGCTGCAGAAACCGATAGCATA 60.159 45.455 20.43 0.00 36.37 3.14
37 38 2.221981 GCTGCAGAAACCGATAGCATAC 59.778 50.000 20.43 0.00 34.35 2.39
38 39 3.457234 CTGCAGAAACCGATAGCATACA 58.543 45.455 8.42 0.00 34.35 2.29
39 40 3.457234 TGCAGAAACCGATAGCATACAG 58.543 45.455 0.00 0.00 0.00 2.74
40 41 3.118775 TGCAGAAACCGATAGCATACAGT 60.119 43.478 0.00 0.00 0.00 3.55
41 42 3.246226 GCAGAAACCGATAGCATACAGTG 59.754 47.826 0.00 0.00 0.00 3.66
42 43 4.682787 CAGAAACCGATAGCATACAGTGA 58.317 43.478 0.00 0.00 0.00 3.41
43 44 4.742167 CAGAAACCGATAGCATACAGTGAG 59.258 45.833 0.00 0.00 0.00 3.51
44 45 2.802787 ACCGATAGCATACAGTGAGC 57.197 50.000 0.00 0.00 0.00 4.26
45 46 2.031870 ACCGATAGCATACAGTGAGCA 58.968 47.619 0.00 0.00 0.00 4.26
46 47 2.035193 ACCGATAGCATACAGTGAGCAG 59.965 50.000 0.00 0.00 0.00 4.24
47 48 2.057316 CGATAGCATACAGTGAGCAGC 58.943 52.381 0.00 0.00 0.00 5.25
48 49 2.544486 CGATAGCATACAGTGAGCAGCA 60.544 50.000 0.00 0.00 0.00 4.41
49 50 3.461061 GATAGCATACAGTGAGCAGCAA 58.539 45.455 0.00 0.00 0.00 3.91
50 51 1.735386 AGCATACAGTGAGCAGCAAG 58.265 50.000 0.00 0.00 0.00 4.01
51 52 0.098376 GCATACAGTGAGCAGCAAGC 59.902 55.000 0.00 0.00 46.19 4.01
81 82 5.526010 AGCGTTTTCCTTAGAACAATACG 57.474 39.130 0.00 0.00 0.00 3.06
145 146 4.467198 TTCCCCGAACTAAGATTCACTC 57.533 45.455 0.00 0.00 0.00 3.51
149 150 3.489398 CCCGAACTAAGATTCACTCTCCG 60.489 52.174 0.00 0.00 31.03 4.63
173 174 3.060473 GTCGGTCGTGACTTGAGAAAAAG 60.060 47.826 0.00 0.00 35.95 2.27
214 215 6.062434 AGACATAGAGAGACGGTAAAATCG 57.938 41.667 0.00 0.00 0.00 3.34
217 218 3.402058 AGAGAGACGGTAAAATCGACG 57.598 47.619 0.00 0.00 0.00 5.12
312 317 4.700700 TGCACTAGGAGACATTGATGATG 58.299 43.478 0.00 0.00 41.71 3.07
361 367 0.455815 ATGTGTGCTCAGCATGCATG 59.544 50.000 22.70 22.70 41.91 4.06
362 368 0.606944 TGTGTGCTCAGCATGCATGA 60.607 50.000 30.64 18.24 41.91 3.07
363 369 0.098905 GTGTGCTCAGCATGCATGAG 59.901 55.000 30.64 28.36 45.71 2.90
386 392 5.055144 GCATCATGCAGATCTAGAAAGACA 58.945 41.667 4.20 0.00 44.26 3.41
441 460 3.316029 CACAGTGCAGACAAAATCCAGAA 59.684 43.478 0.00 0.00 0.00 3.02
517 536 1.003580 TCCAACTCGTACGTCCTACCT 59.996 52.381 16.05 0.00 0.00 3.08
579 627 4.076394 CTCCTGCTATAGTACTCACCTCC 58.924 52.174 0.00 0.00 0.00 4.30
680 905 1.065854 GTCTCTCCCTGTCACCCATTG 60.066 57.143 0.00 0.00 0.00 2.82
698 923 0.320771 TGACAGCCCTCGCTTTCTTC 60.321 55.000 0.55 0.00 45.55 2.87
712 945 3.432467 GCTTTCTTCCTAACTAGCTCCCC 60.432 52.174 0.00 0.00 0.00 4.81
714 947 1.938069 TCTTCCTAACTAGCTCCCCCT 59.062 52.381 0.00 0.00 0.00 4.79
726 961 1.002242 CTCCCCCTCTCCTCCTACCT 61.002 65.000 0.00 0.00 0.00 3.08
728 963 1.151908 CCCCTCTCCTCCTACCTCG 59.848 68.421 0.00 0.00 0.00 4.63
729 964 1.529713 CCCTCTCCTCCTACCTCGC 60.530 68.421 0.00 0.00 0.00 5.03
730 965 1.534697 CCTCTCCTCCTACCTCGCT 59.465 63.158 0.00 0.00 0.00 4.93
731 966 0.106419 CCTCTCCTCCTACCTCGCTT 60.106 60.000 0.00 0.00 0.00 4.68
732 967 1.314730 CTCTCCTCCTACCTCGCTTC 58.685 60.000 0.00 0.00 0.00 3.86
733 968 0.464013 TCTCCTCCTACCTCGCTTCG 60.464 60.000 0.00 0.00 0.00 3.79
734 969 0.748729 CTCCTCCTACCTCGCTTCGT 60.749 60.000 0.00 0.00 0.00 3.85
735 970 0.323178 TCCTCCTACCTCGCTTCGTT 60.323 55.000 0.00 0.00 0.00 3.85
736 971 1.065199 TCCTCCTACCTCGCTTCGTTA 60.065 52.381 0.00 0.00 0.00 3.18
737 972 1.334243 CCTCCTACCTCGCTTCGTTAG 59.666 57.143 0.00 0.00 0.00 2.34
738 973 1.334243 CTCCTACCTCGCTTCGTTAGG 59.666 57.143 0.00 0.00 36.42 2.69
739 974 0.248949 CCTACCTCGCTTCGTTAGGC 60.249 60.000 0.00 0.00 33.42 3.93
740 975 0.739561 CTACCTCGCTTCGTTAGGCT 59.260 55.000 0.00 0.00 33.42 4.58
741 976 1.945394 CTACCTCGCTTCGTTAGGCTA 59.055 52.381 0.00 0.00 33.42 3.93
742 977 0.739561 ACCTCGCTTCGTTAGGCTAG 59.260 55.000 0.00 0.00 33.42 3.42
743 978 0.739561 CCTCGCTTCGTTAGGCTAGT 59.260 55.000 0.00 0.00 0.00 2.57
744 979 1.134560 CCTCGCTTCGTTAGGCTAGTT 59.865 52.381 0.00 0.00 0.00 2.24
745 980 2.452105 CTCGCTTCGTTAGGCTAGTTC 58.548 52.381 0.00 0.00 0.00 3.01
778 1086 3.691342 CTGGTTCTCGGACCGGCA 61.691 66.667 15.25 0.00 42.83 5.69
779 1087 3.649277 CTGGTTCTCGGACCGGCAG 62.649 68.421 15.25 5.02 42.83 4.85
780 1088 3.379445 GGTTCTCGGACCGGCAGA 61.379 66.667 15.25 7.69 0.00 4.26
781 1089 2.182030 GTTCTCGGACCGGCAGAG 59.818 66.667 15.25 15.97 39.78 3.35
782 1090 3.760035 TTCTCGGACCGGCAGAGC 61.760 66.667 15.25 0.00 38.51 4.09
826 1144 1.078848 CTGCAGCTACCACTCACCC 60.079 63.158 0.00 0.00 0.00 4.61
844 1162 1.580815 CCGCACCAAAAACAAGCAAT 58.419 45.000 0.00 0.00 0.00 3.56
882 1200 1.625818 CACCCAACTGCTAGTCTCCTT 59.374 52.381 0.00 0.00 0.00 3.36
1128 1468 1.675641 GTCCCAAGCTCGCAATGGT 60.676 57.895 11.24 0.00 32.13 3.55
1145 1485 3.936372 TGGTGCTCACAGAGTAAGTAC 57.064 47.619 2.21 0.00 31.39 2.73
1146 1486 3.497332 TGGTGCTCACAGAGTAAGTACT 58.503 45.455 2.21 0.00 39.71 2.73
1147 1487 4.659115 TGGTGCTCACAGAGTAAGTACTA 58.341 43.478 0.00 0.00 36.50 1.82
1148 1488 4.458295 TGGTGCTCACAGAGTAAGTACTAC 59.542 45.833 0.00 0.00 36.50 2.73
1149 1489 4.142425 GGTGCTCACAGAGTAAGTACTACC 60.142 50.000 0.00 0.00 36.50 3.18
1150 1490 4.458295 GTGCTCACAGAGTAAGTACTACCA 59.542 45.833 0.00 0.00 36.50 3.25
1154 1494 5.387788 TCACAGAGTAAGTACTACCAACCA 58.612 41.667 0.00 0.00 36.50 3.67
1164 1504 4.885325 AGTACTACCAACCAAACCAAAGTG 59.115 41.667 0.00 0.00 0.00 3.16
1175 1515 2.257353 CCAAAGTGGTAGTGGCTGC 58.743 57.895 0.00 0.00 31.35 5.25
1176 1516 0.250901 CCAAAGTGGTAGTGGCTGCT 60.251 55.000 0.00 0.00 31.35 4.24
1177 1517 1.609208 CAAAGTGGTAGTGGCTGCTT 58.391 50.000 0.00 0.00 0.00 3.91
1178 1518 1.956477 CAAAGTGGTAGTGGCTGCTTT 59.044 47.619 0.00 0.00 0.00 3.51
1179 1519 3.146066 CAAAGTGGTAGTGGCTGCTTTA 58.854 45.455 0.00 0.00 0.00 1.85
1180 1520 2.770164 AGTGGTAGTGGCTGCTTTAG 57.230 50.000 0.00 0.00 0.00 1.85
1202 1542 5.749462 AGTAGCTGCTTTTCCATGAATAGT 58.251 37.500 7.79 0.00 0.00 2.12
1211 1551 6.513066 GCTTTTCCATGAATAGTCAGCTGATC 60.513 42.308 21.47 13.80 37.14 2.92
1230 1570 3.536394 CGACGCGCTAGTGCAGTG 61.536 66.667 26.75 13.78 39.64 3.66
1231 1571 2.430921 GACGCGCTAGTGCAGTGT 60.431 61.111 26.75 16.86 39.64 3.55
1233 1573 4.139420 CGCGCTAGTGCAGTGTGC 62.139 66.667 26.75 11.25 45.29 4.57
1259 1599 1.524002 CATGGCCGGAGTCACTGAT 59.476 57.895 5.05 0.00 0.00 2.90
1260 1600 0.812811 CATGGCCGGAGTCACTGATG 60.813 60.000 5.05 0.00 0.00 3.07
1261 1601 0.977627 ATGGCCGGAGTCACTGATGA 60.978 55.000 5.05 0.00 0.00 2.92
1282 1625 2.143925 GAGTTAGCCTTCGTGCTGTTT 58.856 47.619 7.03 0.00 42.77 2.83
1288 1631 1.237285 CCTTCGTGCTGTTTCAGGGG 61.237 60.000 0.00 0.00 31.21 4.79
1450 1808 3.717294 ATGTGACCCTCCCACCGC 61.717 66.667 0.00 0.00 33.80 5.68
1519 1877 3.857854 GTGAGCATGCGCGTGAGG 61.858 66.667 32.94 7.49 45.49 3.86
1555 1913 4.111016 TACCTGCGTCGTGAGCCG 62.111 66.667 0.00 0.00 38.13 5.52
1573 1931 5.644636 TGAGCCGAATTCGTAAGGTAAAAAT 59.355 36.000 25.10 0.00 37.74 1.82
1575 1933 6.549061 AGCCGAATTCGTAAGGTAAAAATTC 58.451 36.000 25.10 0.00 37.74 2.17
1577 1935 5.961263 CCGAATTCGTAAGGTAAAAATTCCG 59.039 40.000 25.10 1.13 34.40 4.30
1579 1937 6.679919 CGAATTCGTAAGGTAAAAATTCCGAC 59.320 38.462 19.67 0.00 34.40 4.79
1581 1939 4.252878 TCGTAAGGTAAAAATTCCGACCC 58.747 43.478 0.00 0.00 38.47 4.46
1583 1941 3.529216 AAGGTAAAAATTCCGACCCCA 57.471 42.857 0.00 0.00 31.93 4.96
1584 1942 3.529216 AGGTAAAAATTCCGACCCCAA 57.471 42.857 0.00 0.00 31.93 4.12
1585 1943 3.427573 AGGTAAAAATTCCGACCCCAAG 58.572 45.455 0.00 0.00 31.93 3.61
1587 1945 3.192001 GGTAAAAATTCCGACCCCAAGTC 59.808 47.826 0.00 0.00 42.54 3.01
1594 1961 3.658422 GACCCCAAGTCCACCCCC 61.658 72.222 0.00 0.00 39.84 5.40
1603 1970 3.385115 CAAGTCCACCCCCTAAGACTAT 58.615 50.000 0.00 0.00 38.61 2.12
1617 1984 9.520515 CCCCTAAGACTATGCAATGTTTTATAT 57.479 33.333 0.00 0.00 0.00 0.86
1650 2017 3.418684 AAGGTGATAGCAAACCGTCTT 57.581 42.857 0.00 0.00 41.61 3.01
1653 2020 4.504858 AGGTGATAGCAAACCGTCTTAAG 58.495 43.478 0.00 0.00 41.61 1.85
1654 2021 3.621715 GGTGATAGCAAACCGTCTTAAGG 59.378 47.826 1.85 0.00 0.00 2.69
1677 2048 1.946768 GTGCGCCCAAATATTCAGCTA 59.053 47.619 4.18 0.00 0.00 3.32
1679 2050 2.357637 TGCGCCCAAATATTCAGCTAAC 59.642 45.455 4.18 0.00 0.00 2.34
1685 2056 5.440610 CCCAAATATTCAGCTAACCAGTCT 58.559 41.667 0.00 0.00 0.00 3.24
1686 2057 5.297776 CCCAAATATTCAGCTAACCAGTCTG 59.702 44.000 0.00 0.00 0.00 3.51
1702 2073 1.197721 GTCTGCATTTGTTCCAGGACG 59.802 52.381 0.00 0.00 0.00 4.79
1703 2074 1.202758 TCTGCATTTGTTCCAGGACGT 60.203 47.619 0.00 0.00 0.00 4.34
1704 2075 1.608590 CTGCATTTGTTCCAGGACGTT 59.391 47.619 0.00 0.00 0.00 3.99
1706 2077 2.223688 TGCATTTGTTCCAGGACGTTTG 60.224 45.455 0.00 0.00 0.00 2.93
1708 2079 3.305335 GCATTTGTTCCAGGACGTTTGAT 60.305 43.478 0.00 0.00 0.00 2.57
1709 2080 4.083003 GCATTTGTTCCAGGACGTTTGATA 60.083 41.667 0.00 0.00 0.00 2.15
1710 2081 5.563867 GCATTTGTTCCAGGACGTTTGATAA 60.564 40.000 0.00 0.00 0.00 1.75
1721 2092 7.095060 CCAGGACGTTTGATAAGGATGATATTG 60.095 40.741 0.00 0.00 0.00 1.90
1728 2099 6.882610 TGATAAGGATGATATTGTTGTGGC 57.117 37.500 0.00 0.00 0.00 5.01
1729 2100 6.604171 TGATAAGGATGATATTGTTGTGGCT 58.396 36.000 0.00 0.00 0.00 4.75
1730 2101 6.712095 TGATAAGGATGATATTGTTGTGGCTC 59.288 38.462 0.00 0.00 0.00 4.70
1736 2107 4.264253 TGATATTGTTGTGGCTCTTCTGG 58.736 43.478 0.00 0.00 0.00 3.86
1756 2127 2.599659 GGTGCTTGCACTTTATGAAGC 58.400 47.619 22.55 3.13 39.72 3.86
1757 2128 2.030007 GGTGCTTGCACTTTATGAAGCA 60.030 45.455 22.55 5.97 43.29 3.91
1789 2162 0.878416 TAAGCGTTGTCATTGTGCCC 59.122 50.000 0.00 0.00 0.00 5.36
1790 2163 1.106351 AAGCGTTGTCATTGTGCCCA 61.106 50.000 0.00 0.00 0.00 5.36
1791 2164 0.895100 AGCGTTGTCATTGTGCCCAT 60.895 50.000 0.00 0.00 0.00 4.00
1804 2177 0.918258 TGCCCATAAGCTCCACATGA 59.082 50.000 0.00 0.00 0.00 3.07
1814 2187 2.507058 AGCTCCACATGATGAAGGCTTA 59.493 45.455 0.00 0.00 0.00 3.09
1820 2193 2.954318 ACATGATGAAGGCTTATGGCAC 59.046 45.455 0.00 0.00 44.01 5.01
1831 2204 1.405105 CTTATGGCACGGTTGAATGGG 59.595 52.381 0.00 0.00 0.00 4.00
1841 2214 2.161609 CGGTTGAATGGGACTACTTTGC 59.838 50.000 0.00 0.00 0.00 3.68
1842 2215 3.153919 GGTTGAATGGGACTACTTTGCA 58.846 45.455 0.00 0.00 0.00 4.08
1845 2218 1.745653 GAATGGGACTACTTTGCAGGC 59.254 52.381 0.00 0.00 0.00 4.85
1848 2221 1.075374 TGGGACTACTTTGCAGGCAAT 59.925 47.619 7.62 0.00 35.70 3.56
1875 2248 4.418392 CTCAAATTGGGATTTTCTGAGCG 58.582 43.478 0.00 0.00 33.25 5.03
1915 2288 1.267261 AGTCTTGTCAACTCGGTCTCG 59.733 52.381 0.00 0.00 37.82 4.04
1922 2295 2.225019 GTCAACTCGGTCTCGTACTCAA 59.775 50.000 0.00 0.00 37.69 3.02
1939 2312 8.286800 TCGTACTCAATTTTGTTCAATGGTAAG 58.713 33.333 0.00 0.00 0.00 2.34
1959 2332 9.179909 TGGTAAGAAACTTGAAGAATACAAACA 57.820 29.630 0.00 0.00 0.00 2.83
1963 2336 9.750125 AAGAAACTTGAAGAATACAAACAATCC 57.250 29.630 0.00 0.00 0.00 3.01
1988 2361 2.370189 GGATTCGACAGGGAGATCCAAT 59.630 50.000 5.37 0.00 38.24 3.16
1991 2364 3.543680 TCGACAGGGAGATCCAATTTC 57.456 47.619 0.47 0.00 38.24 2.17
1992 2365 2.170607 TCGACAGGGAGATCCAATTTCC 59.829 50.000 0.47 0.00 38.24 3.13
2009 2382 8.944138 TCCAATTTCCCTTTTCCTATTCTTTTT 58.056 29.630 0.00 0.00 0.00 1.94
2013 2386 5.151454 TCCCTTTTCCTATTCTTTTTGGCA 58.849 37.500 0.00 0.00 0.00 4.92
2014 2387 5.604650 TCCCTTTTCCTATTCTTTTTGGCAA 59.395 36.000 0.00 0.00 0.00 4.52
2015 2388 5.700832 CCCTTTTCCTATTCTTTTTGGCAAC 59.299 40.000 0.00 0.00 0.00 4.17
2031 2404 0.032540 CAACAGAGGGCCTTTTGTGC 59.967 55.000 20.91 2.70 30.07 4.57
2032 2405 1.455383 AACAGAGGGCCTTTTGTGCG 61.455 55.000 20.91 1.63 0.00 5.34
2033 2406 1.898574 CAGAGGGCCTTTTGTGCGT 60.899 57.895 7.89 0.00 0.00 5.24
2034 2407 1.600916 AGAGGGCCTTTTGTGCGTC 60.601 57.895 7.89 0.00 0.00 5.19
2035 2408 2.597510 AGGGCCTTTTGTGCGTCC 60.598 61.111 0.00 0.00 0.00 4.79
2036 2409 2.597510 GGGCCTTTTGTGCGTCCT 60.598 61.111 0.84 0.00 0.00 3.85
2037 2410 2.200337 GGGCCTTTTGTGCGTCCTT 61.200 57.895 0.84 0.00 0.00 3.36
2038 2411 0.891904 GGGCCTTTTGTGCGTCCTTA 60.892 55.000 0.84 0.00 0.00 2.69
2039 2412 0.955905 GGCCTTTTGTGCGTCCTTAA 59.044 50.000 0.00 0.00 0.00 1.85
2040 2413 1.338655 GGCCTTTTGTGCGTCCTTAAA 59.661 47.619 0.00 0.00 0.00 1.52
2041 2414 2.029380 GGCCTTTTGTGCGTCCTTAAAT 60.029 45.455 0.00 0.00 0.00 1.40
2042 2415 3.242518 GCCTTTTGTGCGTCCTTAAATC 58.757 45.455 0.00 0.00 0.00 2.17
2050 2423 3.371285 GTGCGTCCTTAAATCCAGAGTTC 59.629 47.826 0.00 0.00 0.00 3.01
2054 2427 4.865365 CGTCCTTAAATCCAGAGTTCAGTC 59.135 45.833 0.00 0.00 0.00 3.51
2055 2428 5.566826 CGTCCTTAAATCCAGAGTTCAGTCA 60.567 44.000 0.00 0.00 0.00 3.41
2059 2432 7.038017 TCCTTAAATCCAGAGTTCAGTCATCTT 60.038 37.037 0.00 0.00 0.00 2.40
2068 2441 7.147828 CCAGAGTTCAGTCATCTTAGATTGGTA 60.148 40.741 0.00 0.00 0.00 3.25
2071 2444 8.311395 AGTTCAGTCATCTTAGATTGGTATGA 57.689 34.615 0.00 0.00 0.00 2.15
2073 2446 8.986847 GTTCAGTCATCTTAGATTGGTATGATG 58.013 37.037 0.00 0.00 36.54 3.07
2081 2454 7.445121 TCTTAGATTGGTATGATGCAAGTAGG 58.555 38.462 0.00 0.00 0.00 3.18
2082 2455 4.392940 AGATTGGTATGATGCAAGTAGGC 58.607 43.478 0.00 0.00 0.00 3.93
2083 2456 3.931907 TTGGTATGATGCAAGTAGGCT 57.068 42.857 0.00 0.00 34.04 4.58
2091 2464 1.153369 GCAAGTAGGCTCATCGGCA 60.153 57.895 0.00 0.00 41.46 5.69
2092 2465 1.432270 GCAAGTAGGCTCATCGGCAC 61.432 60.000 0.00 0.00 41.46 5.01
2095 2468 1.521681 GTAGGCTCATCGGCACCAC 60.522 63.158 0.00 0.00 41.46 4.16
2098 2471 2.821366 GCTCATCGGCACCACCTG 60.821 66.667 0.00 0.00 35.61 4.00
2101 2474 0.249120 CTCATCGGCACCACCTGTTA 59.751 55.000 0.00 0.00 35.61 2.41
2102 2475 0.687920 TCATCGGCACCACCTGTTAA 59.312 50.000 0.00 0.00 35.61 2.01
2103 2476 0.802494 CATCGGCACCACCTGTTAAC 59.198 55.000 0.00 0.00 35.61 2.01
2104 2477 0.322187 ATCGGCACCACCTGTTAACC 60.322 55.000 2.48 0.00 35.61 2.85
2105 2478 1.228003 CGGCACCACCTGTTAACCA 60.228 57.895 2.48 0.00 35.61 3.67
2106 2479 0.608035 CGGCACCACCTGTTAACCAT 60.608 55.000 2.48 0.00 35.61 3.55
2119 2492 7.818930 CACCTGTTAACCATCTTTTATTTGCAT 59.181 33.333 2.48 0.00 0.00 3.96
2155 2530 6.569179 TGTTCTTAAAGGCTAATGGTGTTC 57.431 37.500 0.00 0.00 0.00 3.18
2195 2570 8.237267 GTCAACCAGTTGGATGTTTATTTCTAG 58.763 37.037 10.47 0.00 40.78 2.43
2203 2578 6.957631 TGGATGTTTATTTCTAGGCTTCTGA 58.042 36.000 0.00 0.00 0.00 3.27
2207 2582 6.539173 TGTTTATTTCTAGGCTTCTGACCAA 58.461 36.000 0.00 0.00 0.00 3.67
2209 2584 4.640771 ATTTCTAGGCTTCTGACCAACA 57.359 40.909 0.00 0.00 0.00 3.33
2210 2585 4.640771 TTTCTAGGCTTCTGACCAACAT 57.359 40.909 0.00 0.00 0.00 2.71
2249 2624 9.167311 GCAAATCTTCTATCCTCTTCAGTAAAA 57.833 33.333 0.00 0.00 0.00 1.52
2267 2642 3.508845 AAAGATGCACAACCACTACCT 57.491 42.857 0.00 0.00 0.00 3.08
2270 2645 4.634012 AGATGCACAACCACTACCTAAA 57.366 40.909 0.00 0.00 0.00 1.85
2297 2672 8.616076 AGGAAATTAAGATTTTGCTAGATGTCG 58.384 33.333 0.00 0.00 35.65 4.35
2309 2685 3.544285 GCTAGATGTCGAAACAAGACTCG 59.456 47.826 0.00 0.00 39.30 4.18
2313 2689 2.479837 TGTCGAAACAAGACTCGCAAT 58.520 42.857 0.00 0.00 39.24 3.56
2314 2690 2.220824 TGTCGAAACAAGACTCGCAATG 59.779 45.455 0.00 0.00 39.24 2.82
2315 2691 2.475111 GTCGAAACAAGACTCGCAATGA 59.525 45.455 0.00 0.00 35.84 2.57
2316 2692 3.059868 GTCGAAACAAGACTCGCAATGAA 60.060 43.478 0.00 0.00 35.84 2.57
2317 2693 3.558006 TCGAAACAAGACTCGCAATGAAA 59.442 39.130 0.00 0.00 35.04 2.69
2318 2694 4.034626 TCGAAACAAGACTCGCAATGAAAA 59.965 37.500 0.00 0.00 35.04 2.29
2319 2695 4.376861 CGAAACAAGACTCGCAATGAAAAG 59.623 41.667 0.00 0.00 0.00 2.27
2320 2696 4.900635 AACAAGACTCGCAATGAAAAGT 57.099 36.364 0.00 0.00 0.00 2.66
2321 2697 6.371809 AAACAAGACTCGCAATGAAAAGTA 57.628 33.333 0.00 0.00 0.00 2.24
2322 2698 5.344207 ACAAGACTCGCAATGAAAAGTAC 57.656 39.130 0.00 0.00 0.00 2.73
2323 2699 4.213482 ACAAGACTCGCAATGAAAAGTACC 59.787 41.667 0.00 0.00 0.00 3.34
2324 2700 4.273148 AGACTCGCAATGAAAAGTACCT 57.727 40.909 0.00 0.00 0.00 3.08
2325 2701 5.401531 AGACTCGCAATGAAAAGTACCTA 57.598 39.130 0.00 0.00 0.00 3.08
2326 2702 5.411781 AGACTCGCAATGAAAAGTACCTAG 58.588 41.667 0.00 0.00 0.00 3.02
2327 2703 4.504858 ACTCGCAATGAAAAGTACCTAGG 58.495 43.478 7.41 7.41 0.00 3.02
2328 2704 4.020485 ACTCGCAATGAAAAGTACCTAGGT 60.020 41.667 20.57 20.57 0.00 3.08
2329 2705 5.186409 ACTCGCAATGAAAAGTACCTAGGTA 59.814 40.000 18.10 18.10 0.00 3.08
2330 2706 6.127140 ACTCGCAATGAAAAGTACCTAGGTAT 60.127 38.462 24.36 8.72 32.82 2.73
2331 2707 6.046593 TCGCAATGAAAAGTACCTAGGTATG 58.953 40.000 24.36 16.06 32.82 2.39
2332 2708 5.277345 CGCAATGAAAAGTACCTAGGTATGC 60.277 44.000 24.36 22.90 32.82 3.14
2333 2709 5.008712 GCAATGAAAAGTACCTAGGTATGCC 59.991 44.000 24.36 11.99 32.82 4.40
2335 2711 6.576778 ATGAAAAGTACCTAGGTATGCCTT 57.423 37.500 24.36 18.80 44.18 4.35
2336 2712 6.382919 TGAAAAGTACCTAGGTATGCCTTT 57.617 37.500 24.36 22.81 44.18 3.11
2337 2713 6.412214 TGAAAAGTACCTAGGTATGCCTTTC 58.588 40.000 25.12 24.59 44.18 2.62
2338 2714 4.667519 AAGTACCTAGGTATGCCTTTCG 57.332 45.455 24.36 0.00 44.18 3.46
2339 2715 3.907221 AGTACCTAGGTATGCCTTTCGA 58.093 45.455 24.36 0.00 44.18 3.71
2340 2716 4.481072 AGTACCTAGGTATGCCTTTCGAT 58.519 43.478 24.36 0.00 44.18 3.59
2341 2717 3.753294 ACCTAGGTATGCCTTTCGATG 57.247 47.619 14.41 0.00 44.18 3.84
2342 2718 3.039011 ACCTAGGTATGCCTTTCGATGT 58.961 45.455 14.41 0.00 44.18 3.06
2343 2719 4.220724 ACCTAGGTATGCCTTTCGATGTA 58.779 43.478 14.41 0.00 44.18 2.29
2344 2720 4.281182 ACCTAGGTATGCCTTTCGATGTAG 59.719 45.833 14.41 0.00 44.18 2.74
2345 2721 3.753294 AGGTATGCCTTTCGATGTAGG 57.247 47.619 0.00 4.78 44.18 3.18
2346 2722 3.039011 AGGTATGCCTTTCGATGTAGGT 58.961 45.455 0.00 0.00 44.18 3.08
2347 2723 4.220724 AGGTATGCCTTTCGATGTAGGTA 58.779 43.478 0.00 6.37 44.18 3.08
2348 2724 4.038883 AGGTATGCCTTTCGATGTAGGTAC 59.961 45.833 0.00 6.05 44.18 3.34
2349 2725 4.038883 GGTATGCCTTTCGATGTAGGTACT 59.961 45.833 9.63 0.00 46.37 2.73
2350 2726 4.755266 ATGCCTTTCGATGTAGGTACTT 57.245 40.909 9.63 0.00 41.75 2.24
2351 2727 5.864418 ATGCCTTTCGATGTAGGTACTTA 57.136 39.130 9.63 0.00 41.75 2.24
2352 2728 5.258456 TGCCTTTCGATGTAGGTACTTAG 57.742 43.478 9.63 0.00 41.75 2.18
2353 2729 4.951715 TGCCTTTCGATGTAGGTACTTAGA 59.048 41.667 9.63 0.00 41.75 2.10
2354 2730 5.419788 TGCCTTTCGATGTAGGTACTTAGAA 59.580 40.000 9.63 0.00 41.75 2.10
2355 2731 6.071221 TGCCTTTCGATGTAGGTACTTAGAAA 60.071 38.462 9.63 9.44 41.75 2.52
2356 2732 6.815142 GCCTTTCGATGTAGGTACTTAGAAAA 59.185 38.462 9.63 0.00 41.75 2.29
2357 2733 7.332678 GCCTTTCGATGTAGGTACTTAGAAAAA 59.667 37.037 9.63 0.00 41.75 1.94
2358 2734 9.379791 CCTTTCGATGTAGGTACTTAGAAAAAT 57.620 33.333 10.43 0.00 41.75 1.82
2363 2739 8.762426 CGATGTAGGTACTTAGAAAAATAAGGC 58.238 37.037 0.00 0.00 41.75 4.35
2364 2740 9.833917 GATGTAGGTACTTAGAAAAATAAGGCT 57.166 33.333 0.00 0.00 41.75 4.58
2369 2745 9.582648 AGGTACTTAGAAAAATAAGGCTTTCAA 57.417 29.630 4.45 0.00 37.13 2.69
2383 2759 7.833285 AAGGCTTTCAAATACTTAAAGGACA 57.167 32.000 0.00 0.00 32.14 4.02
2384 2760 7.454260 AGGCTTTCAAATACTTAAAGGACAG 57.546 36.000 0.00 0.00 32.14 3.51
2385 2761 7.231467 AGGCTTTCAAATACTTAAAGGACAGA 58.769 34.615 0.00 0.00 32.14 3.41
2386 2762 7.175119 AGGCTTTCAAATACTTAAAGGACAGAC 59.825 37.037 0.00 0.00 32.14 3.51
2387 2763 7.175119 GGCTTTCAAATACTTAAAGGACAGACT 59.825 37.037 0.00 0.00 32.14 3.24
2388 2764 8.017946 GCTTTCAAATACTTAAAGGACAGACTG 58.982 37.037 0.00 0.00 32.14 3.51
2389 2765 8.974060 TTTCAAATACTTAAAGGACAGACTGT 57.026 30.769 8.12 8.12 0.00 3.55
2390 2766 7.962964 TCAAATACTTAAAGGACAGACTGTG 57.037 36.000 14.14 0.00 0.00 3.66
2391 2767 6.934645 TCAAATACTTAAAGGACAGACTGTGG 59.065 38.462 14.14 0.00 0.00 4.17
2392 2768 6.681729 AATACTTAAAGGACAGACTGTGGA 57.318 37.500 14.14 0.00 0.00 4.02
2393 2769 4.608948 ACTTAAAGGACAGACTGTGGAG 57.391 45.455 14.14 4.20 0.00 3.86
2394 2770 3.244249 ACTTAAAGGACAGACTGTGGAGC 60.244 47.826 14.14 0.00 0.00 4.70
2395 2771 1.131638 AAAGGACAGACTGTGGAGCA 58.868 50.000 14.14 0.00 0.00 4.26
2396 2772 1.131638 AAGGACAGACTGTGGAGCAA 58.868 50.000 14.14 0.00 0.00 3.91
2397 2773 0.683973 AGGACAGACTGTGGAGCAAG 59.316 55.000 14.14 0.00 0.00 4.01
2398 2774 0.681733 GGACAGACTGTGGAGCAAGA 59.318 55.000 14.14 0.00 0.00 3.02
2399 2775 1.277557 GGACAGACTGTGGAGCAAGAT 59.722 52.381 14.14 0.00 0.00 2.40
2400 2776 2.344950 GACAGACTGTGGAGCAAGATG 58.655 52.381 14.14 0.00 0.00 2.90
2401 2777 1.973515 ACAGACTGTGGAGCAAGATGA 59.026 47.619 7.47 0.00 0.00 2.92
2402 2778 2.369860 ACAGACTGTGGAGCAAGATGAA 59.630 45.455 7.47 0.00 0.00 2.57
2403 2779 3.181451 ACAGACTGTGGAGCAAGATGAAA 60.181 43.478 7.47 0.00 0.00 2.69
2404 2780 3.436015 CAGACTGTGGAGCAAGATGAAAG 59.564 47.826 0.00 0.00 0.00 2.62
2405 2781 3.326006 AGACTGTGGAGCAAGATGAAAGA 59.674 43.478 0.00 0.00 0.00 2.52
2406 2782 4.067896 GACTGTGGAGCAAGATGAAAGAA 58.932 43.478 0.00 0.00 0.00 2.52
2407 2783 3.817647 ACTGTGGAGCAAGATGAAAGAAC 59.182 43.478 0.00 0.00 0.00 3.01
2408 2784 3.817084 CTGTGGAGCAAGATGAAAGAACA 59.183 43.478 0.00 0.00 0.00 3.18
2409 2785 3.817084 TGTGGAGCAAGATGAAAGAACAG 59.183 43.478 0.00 0.00 0.00 3.16
2410 2786 4.067896 GTGGAGCAAGATGAAAGAACAGA 58.932 43.478 0.00 0.00 0.00 3.41
2411 2787 4.067896 TGGAGCAAGATGAAAGAACAGAC 58.932 43.478 0.00 0.00 0.00 3.51
2412 2788 4.202398 TGGAGCAAGATGAAAGAACAGACT 60.202 41.667 0.00 0.00 0.00 3.24
2413 2789 5.012046 TGGAGCAAGATGAAAGAACAGACTA 59.988 40.000 0.00 0.00 0.00 2.59
2414 2790 5.580297 GGAGCAAGATGAAAGAACAGACTAG 59.420 44.000 0.00 0.00 0.00 2.57
2415 2791 5.486526 AGCAAGATGAAAGAACAGACTAGG 58.513 41.667 0.00 0.00 0.00 3.02
2416 2792 4.633565 GCAAGATGAAAGAACAGACTAGGG 59.366 45.833 0.00 0.00 0.00 3.53
2417 2793 5.569630 GCAAGATGAAAGAACAGACTAGGGA 60.570 44.000 0.00 0.00 0.00 4.20
2418 2794 6.467677 CAAGATGAAAGAACAGACTAGGGAA 58.532 40.000 0.00 0.00 0.00 3.97
2419 2795 6.688073 AGATGAAAGAACAGACTAGGGAAA 57.312 37.500 0.00 0.00 0.00 3.13
2420 2796 7.079451 AGATGAAAGAACAGACTAGGGAAAA 57.921 36.000 0.00 0.00 0.00 2.29
2421 2797 7.518188 AGATGAAAGAACAGACTAGGGAAAAA 58.482 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.610433 TCTGCAGCAACGTCTCTATTG 58.390 47.619 9.47 0.00 0.00 1.90
4 5 3.319137 TTCTGCAGCAACGTCTCTATT 57.681 42.857 9.47 0.00 0.00 1.73
5 6 2.996621 GTTTCTGCAGCAACGTCTCTAT 59.003 45.455 13.42 0.00 0.00 1.98
6 7 2.404215 GTTTCTGCAGCAACGTCTCTA 58.596 47.619 13.42 0.00 0.00 2.43
7 8 1.221414 GTTTCTGCAGCAACGTCTCT 58.779 50.000 13.42 0.00 0.00 3.10
8 9 0.235926 GGTTTCTGCAGCAACGTCTC 59.764 55.000 20.52 5.47 0.00 3.36
9 10 1.498865 CGGTTTCTGCAGCAACGTCT 61.499 55.000 20.52 0.00 0.00 4.18
10 11 1.082756 CGGTTTCTGCAGCAACGTC 60.083 57.895 20.52 8.86 0.00 4.34
11 12 0.884704 ATCGGTTTCTGCAGCAACGT 60.885 50.000 20.52 8.48 0.00 3.99
12 13 1.061131 CTATCGGTTTCTGCAGCAACG 59.939 52.381 20.52 17.73 0.00 4.10
13 14 1.202076 GCTATCGGTTTCTGCAGCAAC 60.202 52.381 19.40 19.40 0.00 4.17
14 15 1.086696 GCTATCGGTTTCTGCAGCAA 58.913 50.000 9.47 0.30 0.00 3.91
15 16 0.036483 TGCTATCGGTTTCTGCAGCA 60.036 50.000 9.47 0.00 36.72 4.41
16 17 1.303309 ATGCTATCGGTTTCTGCAGC 58.697 50.000 9.47 0.00 37.07 5.25
17 18 3.457234 TGTATGCTATCGGTTTCTGCAG 58.543 45.455 7.63 7.63 37.07 4.41
18 19 3.118775 ACTGTATGCTATCGGTTTCTGCA 60.119 43.478 0.00 0.00 38.05 4.41
19 20 3.246226 CACTGTATGCTATCGGTTTCTGC 59.754 47.826 0.00 0.00 0.00 4.26
20 21 4.682787 TCACTGTATGCTATCGGTTTCTG 58.317 43.478 0.00 0.00 0.00 3.02
21 22 4.737946 GCTCACTGTATGCTATCGGTTTCT 60.738 45.833 0.00 0.00 0.00 2.52
22 23 3.491267 GCTCACTGTATGCTATCGGTTTC 59.509 47.826 0.00 0.00 0.00 2.78
23 24 3.118775 TGCTCACTGTATGCTATCGGTTT 60.119 43.478 5.93 0.00 0.00 3.27
24 25 2.430694 TGCTCACTGTATGCTATCGGTT 59.569 45.455 5.93 0.00 0.00 4.44
25 26 2.031870 TGCTCACTGTATGCTATCGGT 58.968 47.619 5.93 0.00 0.00 4.69
26 27 2.670479 CTGCTCACTGTATGCTATCGG 58.330 52.381 5.93 0.00 0.00 4.18
27 28 2.057316 GCTGCTCACTGTATGCTATCG 58.943 52.381 0.00 0.00 0.00 2.92
28 29 3.103447 TGCTGCTCACTGTATGCTATC 57.897 47.619 0.00 0.00 0.00 2.08
29 30 3.464907 CTTGCTGCTCACTGTATGCTAT 58.535 45.455 0.00 0.00 0.00 2.97
30 31 2.897436 CTTGCTGCTCACTGTATGCTA 58.103 47.619 0.00 0.00 0.00 3.49
31 32 1.735386 CTTGCTGCTCACTGTATGCT 58.265 50.000 0.00 0.00 0.00 3.79
32 33 0.098376 GCTTGCTGCTCACTGTATGC 59.902 55.000 0.00 0.00 38.95 3.14
33 34 1.397343 CTGCTTGCTGCTCACTGTATG 59.603 52.381 0.00 0.00 43.37 2.39
34 35 1.735386 CTGCTTGCTGCTCACTGTAT 58.265 50.000 0.00 0.00 43.37 2.29
35 36 0.952497 GCTGCTTGCTGCTCACTGTA 60.952 55.000 15.47 0.00 43.37 2.74
36 37 2.259439 GCTGCTTGCTGCTCACTGT 61.259 57.895 15.47 0.00 43.37 3.55
37 38 2.561885 GCTGCTTGCTGCTCACTG 59.438 61.111 15.47 0.00 43.37 3.66
38 39 2.799814 ATCGCTGCTTGCTGCTCACT 62.800 55.000 19.16 2.31 43.37 3.41
39 40 1.086067 TATCGCTGCTTGCTGCTCAC 61.086 55.000 19.16 0.00 43.37 3.51
40 41 0.391528 TTATCGCTGCTTGCTGCTCA 60.392 50.000 19.16 8.61 43.37 4.26
41 42 0.304098 CTTATCGCTGCTTGCTGCTC 59.696 55.000 19.16 0.00 43.37 4.26
42 43 1.712977 GCTTATCGCTGCTTGCTGCT 61.713 55.000 19.16 7.07 43.37 4.24
43 44 1.298190 GCTTATCGCTGCTTGCTGC 60.298 57.895 13.27 13.27 40.11 5.25
44 45 1.011463 CGCTTATCGCTGCTTGCTG 60.011 57.895 0.00 0.00 40.11 4.41
45 46 1.021390 AACGCTTATCGCTGCTTGCT 61.021 50.000 0.00 0.00 43.23 3.91
46 47 0.179189 AAACGCTTATCGCTGCTTGC 60.179 50.000 0.00 0.00 43.23 4.01
47 48 2.169179 GAAAACGCTTATCGCTGCTTG 58.831 47.619 0.00 0.00 43.23 4.01
48 49 1.130561 GGAAAACGCTTATCGCTGCTT 59.869 47.619 0.00 0.00 43.23 3.91
49 50 0.727398 GGAAAACGCTTATCGCTGCT 59.273 50.000 0.00 0.00 43.23 4.24
50 51 0.727398 AGGAAAACGCTTATCGCTGC 59.273 50.000 0.00 0.00 43.23 5.25
51 52 3.863424 TCTAAGGAAAACGCTTATCGCTG 59.137 43.478 0.00 0.00 43.23 5.18
52 53 4.119442 TCTAAGGAAAACGCTTATCGCT 57.881 40.909 0.00 0.00 43.23 4.93
53 54 4.092383 TGTTCTAAGGAAAACGCTTATCGC 59.908 41.667 0.00 0.00 35.91 4.58
54 55 5.773239 TGTTCTAAGGAAAACGCTTATCG 57.227 39.130 0.00 0.00 37.42 2.92
55 56 7.844653 CGTATTGTTCTAAGGAAAACGCTTATC 59.155 37.037 0.00 0.00 32.81 1.75
56 57 7.332678 ACGTATTGTTCTAAGGAAAACGCTTAT 59.667 33.333 0.00 0.00 33.25 1.73
60 61 5.273523 ACGTATTGTTCTAAGGAAAACGC 57.726 39.130 0.00 0.00 33.25 4.84
93 94 9.893305 GTAGAAAAATACAAGTTGCATTGTACT 57.107 29.630 13.66 9.28 45.68 2.73
94 95 9.893305 AGTAGAAAAATACAAGTTGCATTGTAC 57.107 29.630 13.66 3.49 45.68 2.90
129 130 4.358494 ACGGAGAGTGAATCTTAGTTCG 57.642 45.455 0.00 0.00 38.84 3.95
149 150 0.309922 TCTCAAGTCACGACCGACAC 59.690 55.000 0.00 0.00 38.43 3.67
173 174 3.558418 TGTCTAAGTTGACTGCGGTTTTC 59.442 43.478 0.00 0.00 37.79 2.29
312 317 5.164954 GCATCGTCCTGGATAGATTAAGAC 58.835 45.833 12.90 0.00 0.00 3.01
361 367 5.406175 GTCTTTCTAGATCTGCATGATGCTC 59.594 44.000 19.19 7.98 37.20 4.26
362 368 5.163332 TGTCTTTCTAGATCTGCATGATGCT 60.163 40.000 19.19 0.00 37.20 3.79
363 369 5.055144 TGTCTTTCTAGATCTGCATGATGC 58.945 41.667 11.12 11.12 36.96 3.91
364 370 6.369340 GGATGTCTTTCTAGATCTGCATGATG 59.631 42.308 5.18 0.00 35.14 3.07
365 371 6.042897 TGGATGTCTTTCTAGATCTGCATGAT 59.957 38.462 5.18 0.00 38.27 2.45
366 372 5.364735 TGGATGTCTTTCTAGATCTGCATGA 59.635 40.000 5.18 0.00 31.86 3.07
381 387 2.387952 GGGGGAGTGTGGATGTCTT 58.612 57.895 0.00 0.00 0.00 3.01
441 460 7.904205 AGTAGTATTAGTTTAGTTGTGTGGCT 58.096 34.615 0.00 0.00 0.00 4.75
542 561 2.100916 GCAGGAGTAGACGGCTCAATTA 59.899 50.000 0.00 0.00 34.83 1.40
579 627 0.870393 ATTCAGTGACAGTTGCAGCG 59.130 50.000 0.00 0.00 0.00 5.18
698 923 1.481615 GGAGAGGGGGAGCTAGTTAGG 60.482 61.905 0.00 0.00 0.00 2.69
712 945 0.106419 AAGCGAGGTAGGAGGAGAGG 60.106 60.000 0.00 0.00 0.00 3.69
714 947 0.464013 CGAAGCGAGGTAGGAGGAGA 60.464 60.000 0.00 0.00 0.00 3.71
726 961 1.202110 CGAACTAGCCTAACGAAGCGA 60.202 52.381 0.00 0.00 0.00 4.93
728 963 0.922032 GCGAACTAGCCTAACGAAGC 59.078 55.000 0.00 0.00 0.00 3.86
729 964 2.563471 AGCGAACTAGCCTAACGAAG 57.437 50.000 0.00 0.00 38.01 3.79
730 965 2.730090 CGAAGCGAACTAGCCTAACGAA 60.730 50.000 0.00 0.00 38.01 3.85
731 966 1.202110 CGAAGCGAACTAGCCTAACGA 60.202 52.381 0.00 0.00 38.01 3.85
732 967 1.189403 CGAAGCGAACTAGCCTAACG 58.811 55.000 0.00 0.00 38.01 3.18
816 1134 2.559922 TTTTGGTGCGGGTGAGTGGT 62.560 55.000 0.00 0.00 0.00 4.16
826 1144 3.362888 GCTTATTGCTTGTTTTTGGTGCG 60.363 43.478 0.00 0.00 38.95 5.34
882 1200 6.964464 AGCAGTAGGAGATATAGCTTAGCTA 58.036 40.000 16.76 16.76 45.55 3.32
974 1307 4.792648 GCTCGCTCGCTCACAGCT 62.793 66.667 0.00 0.00 39.60 4.24
992 1328 1.706301 CTCGACGACATGCTTGCTG 59.294 57.895 0.00 0.00 0.00 4.41
996 1336 2.097038 GCTGCTCGACGACATGCTT 61.097 57.895 8.74 0.00 0.00 3.91
1048 1388 1.888172 GCTCCTCCGAGATCGACGA 60.888 63.158 14.80 0.00 43.02 4.20
1099 1439 3.316573 CTTGGGACTCCGGGAGCAC 62.317 68.421 23.84 17.25 35.24 4.40
1128 1468 4.659115 TGGTAGTACTTACTCTGTGAGCA 58.341 43.478 0.00 0.00 37.73 4.26
1137 1477 5.892524 TGGTTTGGTTGGTAGTACTTACT 57.107 39.130 0.00 0.00 40.24 2.24
1140 1480 5.358725 CACTTTGGTTTGGTTGGTAGTACTT 59.641 40.000 0.00 0.00 0.00 2.24
1145 1485 3.726291 CCACTTTGGTTTGGTTGGTAG 57.274 47.619 0.00 0.00 31.35 3.18
1175 1515 6.500684 TTCATGGAAAAGCAGCTACTAAAG 57.499 37.500 0.00 0.00 0.00 1.85
1176 1516 7.829211 ACTATTCATGGAAAAGCAGCTACTAAA 59.171 33.333 0.00 0.00 0.00 1.85
1177 1517 7.338710 ACTATTCATGGAAAAGCAGCTACTAA 58.661 34.615 0.00 0.00 0.00 2.24
1178 1518 6.889198 ACTATTCATGGAAAAGCAGCTACTA 58.111 36.000 0.00 0.00 0.00 1.82
1179 1519 5.749462 ACTATTCATGGAAAAGCAGCTACT 58.251 37.500 0.00 0.00 0.00 2.57
1180 1520 5.586243 TGACTATTCATGGAAAAGCAGCTAC 59.414 40.000 0.00 0.00 0.00 3.58
1187 1527 6.292757 CGATCAGCTGACTATTCATGGAAAAG 60.293 42.308 20.97 0.00 0.00 2.27
1237 1577 4.758251 TGACTCCGGCCATGCACG 62.758 66.667 2.24 0.85 0.00 5.34
1245 1585 0.102120 CTCTCATCAGTGACTCCGGC 59.898 60.000 0.00 0.00 0.00 6.13
1246 1586 1.468985 ACTCTCATCAGTGACTCCGG 58.531 55.000 0.00 0.00 0.00 5.14
1259 1599 1.067565 CAGCACGAAGGCTAACTCTCA 60.068 52.381 0.00 0.00 43.68 3.27
1260 1600 1.067495 ACAGCACGAAGGCTAACTCTC 60.067 52.381 0.00 0.00 43.68 3.20
1261 1601 0.969894 ACAGCACGAAGGCTAACTCT 59.030 50.000 0.00 0.00 43.68 3.24
1307 1650 0.457851 ATGTAGCTGCACGTCTCCTC 59.542 55.000 6.66 0.00 0.00 3.71
1346 1689 1.602605 TCTCGCTCAGGTCGTCCAA 60.603 57.895 0.51 0.00 35.89 3.53
1413 1756 3.941081 GGAGGCTCCTGATGACGA 58.059 61.111 26.44 0.00 32.53 4.20
1475 1833 1.605058 GCCGGAGAGCTTGGTAGACA 61.605 60.000 5.05 0.00 0.00 3.41
1527 1885 0.166814 ACGCAGGTACTCGTCGTAAC 59.833 55.000 0.00 0.00 37.58 2.50
1528 1886 0.443869 GACGCAGGTACTCGTCGTAA 59.556 55.000 15.70 0.00 44.05 3.18
1529 1887 2.081526 GACGCAGGTACTCGTCGTA 58.918 57.895 15.70 0.00 44.05 3.43
1530 1888 2.866028 GACGCAGGTACTCGTCGT 59.134 61.111 15.70 10.10 44.05 4.34
1532 1890 1.511464 CACGACGCAGGTACTCGTC 60.511 63.158 18.71 18.71 46.89 4.20
1535 1893 1.514443 GCTCACGACGCAGGTACTC 60.514 63.158 0.00 0.00 34.60 2.59
1547 1905 0.921347 CCTTACGAATTCGGCTCACG 59.079 55.000 29.79 12.44 44.95 4.35
1555 1913 6.963242 GGTCGGAATTTTTACCTTACGAATTC 59.037 38.462 0.00 0.00 39.27 2.17
1561 1919 4.334552 TGGGGTCGGAATTTTTACCTTAC 58.665 43.478 0.00 0.00 32.38 2.34
1562 1920 4.654389 TGGGGTCGGAATTTTTACCTTA 57.346 40.909 0.00 0.00 32.38 2.69
1573 1931 2.522367 GGTGGACTTGGGGTCGGAA 61.522 63.158 0.00 0.00 45.35 4.30
1575 1933 4.029809 GGGTGGACTTGGGGTCGG 62.030 72.222 0.00 0.00 45.35 4.79
1577 1935 2.776053 TAGGGGGTGGACTTGGGGTC 62.776 65.000 0.00 0.00 43.79 4.46
1579 1937 1.542881 TTAGGGGGTGGACTTGGGG 60.543 63.158 0.00 0.00 0.00 4.96
1581 1939 0.618981 GTCTTAGGGGGTGGACTTGG 59.381 60.000 0.00 0.00 0.00 3.61
1583 1941 3.385115 CATAGTCTTAGGGGGTGGACTT 58.615 50.000 0.00 0.00 39.39 3.01
1584 1942 2.960104 GCATAGTCTTAGGGGGTGGACT 60.960 54.545 0.00 0.00 41.22 3.85
1585 1943 1.416772 GCATAGTCTTAGGGGGTGGAC 59.583 57.143 0.00 0.00 0.00 4.02
1587 1945 1.507140 TGCATAGTCTTAGGGGGTGG 58.493 55.000 0.00 0.00 0.00 4.61
1617 1984 7.167924 TGCTATCACCTTTGATGCAATTTTA 57.832 32.000 0.00 0.00 42.79 1.52
1666 2033 5.102953 TGCAGACTGGTTAGCTGAATATT 57.897 39.130 4.26 0.00 32.99 1.28
1677 2048 2.665165 TGGAACAAATGCAGACTGGTT 58.335 42.857 4.26 0.00 31.92 3.67
1685 2056 1.686355 AACGTCCTGGAACAAATGCA 58.314 45.000 0.00 0.00 38.70 3.96
1686 2057 2.034053 TCAAACGTCCTGGAACAAATGC 59.966 45.455 0.00 0.00 38.70 3.56
1702 2073 7.649306 GCCACAACAATATCATCCTTATCAAAC 59.351 37.037 0.00 0.00 0.00 2.93
1703 2074 7.560991 AGCCACAACAATATCATCCTTATCAAA 59.439 33.333 0.00 0.00 0.00 2.69
1704 2075 7.062322 AGCCACAACAATATCATCCTTATCAA 58.938 34.615 0.00 0.00 0.00 2.57
1706 2077 6.939163 AGAGCCACAACAATATCATCCTTATC 59.061 38.462 0.00 0.00 0.00 1.75
1708 2079 6.252599 AGAGCCACAACAATATCATCCTTA 57.747 37.500 0.00 0.00 0.00 2.69
1709 2080 5.121380 AGAGCCACAACAATATCATCCTT 57.879 39.130 0.00 0.00 0.00 3.36
1710 2081 4.785346 AGAGCCACAACAATATCATCCT 57.215 40.909 0.00 0.00 0.00 3.24
1721 2092 1.518903 GCACCCAGAAGAGCCACAAC 61.519 60.000 0.00 0.00 0.00 3.32
1728 2099 2.251600 GTGCAAGCACCCAGAAGAG 58.748 57.895 14.01 0.00 40.79 2.85
1729 2100 4.481195 GTGCAAGCACCCAGAAGA 57.519 55.556 14.01 0.00 40.79 2.87
1775 2148 2.493278 AGCTTATGGGCACAATGACAAC 59.507 45.455 0.00 0.00 34.17 3.32
1777 2150 2.368439 GAGCTTATGGGCACAATGACA 58.632 47.619 0.00 0.00 34.17 3.58
1789 2162 3.252701 GCCTTCATCATGTGGAGCTTATG 59.747 47.826 4.06 0.00 31.47 1.90
1790 2163 3.137913 AGCCTTCATCATGTGGAGCTTAT 59.862 43.478 4.06 0.00 31.47 1.73
1791 2164 2.507058 AGCCTTCATCATGTGGAGCTTA 59.493 45.455 4.06 0.00 31.47 3.09
1804 2177 0.255890 ACCGTGCCATAAGCCTTCAT 59.744 50.000 0.00 0.00 42.71 2.57
1814 2187 0.965363 GTCCCATTCAACCGTGCCAT 60.965 55.000 0.00 0.00 0.00 4.40
1820 2193 2.161609 GCAAAGTAGTCCCATTCAACCG 59.838 50.000 0.00 0.00 0.00 4.44
1831 2204 4.354587 GCATAATTGCCTGCAAAGTAGTC 58.645 43.478 8.84 0.00 43.38 2.59
1841 2214 8.332958 AAATCCCAATTTGAGCATAATTGCCTG 61.333 37.037 10.81 4.61 40.45 4.85
1842 2215 6.353255 AAATCCCAATTTGAGCATAATTGCCT 60.353 34.615 10.81 0.00 40.45 4.75
1845 2218 8.609176 CAGAAAATCCCAATTTGAGCATAATTG 58.391 33.333 0.00 9.80 35.27 2.32
1848 2221 7.479352 TCAGAAAATCCCAATTTGAGCATAA 57.521 32.000 0.00 0.00 35.27 1.90
1875 2248 3.190535 ACTCATTACAATGTTCGCCCAAC 59.809 43.478 0.00 0.00 37.65 3.77
1915 2288 9.959749 TTCTTACCATTGAACAAAATTGAGTAC 57.040 29.630 0.00 0.00 0.00 2.73
1922 2295 9.883142 TTCAAGTTTCTTACCATTGAACAAAAT 57.117 25.926 0.00 0.00 35.55 1.82
1939 2312 9.185192 CTGGATTGTTTGTATTCTTCAAGTTTC 57.815 33.333 0.00 0.00 0.00 2.78
1963 2336 1.769026 TCTCCCTGTCGAATCCTCTG 58.231 55.000 0.00 0.00 0.00 3.35
1971 2344 2.170607 GGAAATTGGATCTCCCTGTCGA 59.829 50.000 0.00 0.00 35.38 4.20
1988 2361 6.100424 TGCCAAAAAGAATAGGAAAAGGGAAA 59.900 34.615 0.00 0.00 0.00 3.13
1991 2364 5.482163 TGCCAAAAAGAATAGGAAAAGGG 57.518 39.130 0.00 0.00 0.00 3.95
1992 2365 6.287525 TGTTGCCAAAAAGAATAGGAAAAGG 58.712 36.000 0.00 0.00 0.00 3.11
2013 2386 1.455383 CGCACAAAAGGCCCTCTGTT 61.455 55.000 0.00 0.00 0.00 3.16
2014 2387 1.898574 CGCACAAAAGGCCCTCTGT 60.899 57.895 0.00 0.00 0.00 3.41
2015 2388 1.856265 GACGCACAAAAGGCCCTCTG 61.856 60.000 0.00 0.00 0.00 3.35
2016 2389 1.600916 GACGCACAAAAGGCCCTCT 60.601 57.895 0.00 0.00 0.00 3.69
2017 2390 2.626780 GGACGCACAAAAGGCCCTC 61.627 63.158 0.00 0.00 0.00 4.30
2018 2391 2.597510 GGACGCACAAAAGGCCCT 60.598 61.111 0.00 0.00 0.00 5.19
2031 2404 4.822026 ACTGAACTCTGGATTTAAGGACG 58.178 43.478 0.00 0.00 0.00 4.79
2032 2405 5.794894 TGACTGAACTCTGGATTTAAGGAC 58.205 41.667 0.00 0.00 0.00 3.85
2033 2406 6.441924 AGATGACTGAACTCTGGATTTAAGGA 59.558 38.462 0.00 0.00 0.00 3.36
2034 2407 6.648192 AGATGACTGAACTCTGGATTTAAGG 58.352 40.000 0.00 0.00 0.00 2.69
2035 2408 9.311916 CTAAGATGACTGAACTCTGGATTTAAG 57.688 37.037 0.00 0.00 0.00 1.85
2036 2409 9.035890 TCTAAGATGACTGAACTCTGGATTTAA 57.964 33.333 0.00 0.00 0.00 1.52
2037 2410 8.595362 TCTAAGATGACTGAACTCTGGATTTA 57.405 34.615 0.00 0.00 0.00 1.40
2038 2411 7.487822 TCTAAGATGACTGAACTCTGGATTT 57.512 36.000 0.00 0.00 0.00 2.17
2039 2412 7.673641 ATCTAAGATGACTGAACTCTGGATT 57.326 36.000 0.00 0.00 0.00 3.01
2040 2413 7.418827 CCAATCTAAGATGACTGAACTCTGGAT 60.419 40.741 0.00 0.00 0.00 3.41
2041 2414 6.127225 CCAATCTAAGATGACTGAACTCTGGA 60.127 42.308 0.00 0.00 0.00 3.86
2042 2415 6.047870 CCAATCTAAGATGACTGAACTCTGG 58.952 44.000 0.00 0.00 0.00 3.86
2050 2423 6.932960 TGCATCATACCAATCTAAGATGACTG 59.067 38.462 0.00 0.00 35.98 3.51
2054 2427 7.741027 ACTTGCATCATACCAATCTAAGATG 57.259 36.000 0.00 0.00 36.76 2.90
2055 2428 8.099537 CCTACTTGCATCATACCAATCTAAGAT 58.900 37.037 0.00 0.00 0.00 2.40
2059 2432 5.307976 AGCCTACTTGCATCATACCAATCTA 59.692 40.000 0.00 0.00 0.00 1.98
2068 2441 2.549563 CCGATGAGCCTACTTGCATCAT 60.550 50.000 0.00 0.00 37.56 2.45
2071 2444 0.533755 GCCGATGAGCCTACTTGCAT 60.534 55.000 0.00 0.00 0.00 3.96
2073 2446 1.153369 TGCCGATGAGCCTACTTGC 60.153 57.895 0.00 0.00 0.00 4.01
2081 2454 2.821366 CAGGTGGTGCCGATGAGC 60.821 66.667 0.00 0.00 43.70 4.26
2082 2455 0.249120 TAACAGGTGGTGCCGATGAG 59.751 55.000 0.00 0.00 43.70 2.90
2083 2456 0.687920 TTAACAGGTGGTGCCGATGA 59.312 50.000 0.00 0.00 43.70 2.92
2091 2464 7.666623 CAAATAAAAGATGGTTAACAGGTGGT 58.333 34.615 8.10 0.00 0.00 4.16
2092 2465 6.589907 GCAAATAAAAGATGGTTAACAGGTGG 59.410 38.462 8.10 0.00 0.00 4.61
2101 2474 8.752187 ACTGTCATATGCAAATAAAAGATGGTT 58.248 29.630 0.00 0.00 0.00 3.67
2102 2475 8.297470 ACTGTCATATGCAAATAAAAGATGGT 57.703 30.769 0.00 0.00 0.00 3.55
2103 2476 9.590451 AAACTGTCATATGCAAATAAAAGATGG 57.410 29.630 0.00 0.00 0.00 3.51
2119 2492 9.515226 AGCCTTTAAGAACAATAAACTGTCATA 57.485 29.630 0.00 0.00 0.00 2.15
2136 2509 3.377172 CCCGAACACCATTAGCCTTTAAG 59.623 47.826 0.00 0.00 0.00 1.85
2138 2511 2.942306 GCCCGAACACCATTAGCCTTTA 60.942 50.000 0.00 0.00 0.00 1.85
2141 2514 1.077716 GCCCGAACACCATTAGCCT 60.078 57.895 0.00 0.00 0.00 4.58
2142 2515 2.469516 CGCCCGAACACCATTAGCC 61.470 63.158 0.00 0.00 0.00 3.93
2143 2516 1.448893 TCGCCCGAACACCATTAGC 60.449 57.895 0.00 0.00 0.00 3.09
2144 2517 0.108329 AGTCGCCCGAACACCATTAG 60.108 55.000 0.00 0.00 0.00 1.73
2168 2543 5.371115 AATAAACATCCAACTGGTTGACG 57.629 39.130 14.17 5.43 42.93 4.35
2171 2546 7.538575 CCTAGAAATAAACATCCAACTGGTTG 58.461 38.462 6.50 6.50 40.01 3.77
2195 2570 9.289782 AGAATTAATATATGTTGGTCAGAAGCC 57.710 33.333 0.00 0.00 0.00 4.35
2229 2604 7.984050 TGCATCTTTTACTGAAGAGGATAGAAG 59.016 37.037 3.76 0.00 39.18 2.85
2232 2607 7.044181 TGTGCATCTTTTACTGAAGAGGATAG 58.956 38.462 3.76 0.00 39.18 2.08
2237 2612 5.239306 TGGTTGTGCATCTTTTACTGAAGAG 59.761 40.000 0.00 0.00 38.90 2.85
2249 2624 4.634012 TTTAGGTAGTGGTTGTGCATCT 57.366 40.909 0.00 0.00 0.00 2.90
2291 2666 2.058798 TGCGAGTCTTGTTTCGACATC 58.941 47.619 0.00 0.00 39.06 3.06
2297 2672 5.273944 ACTTTTCATTGCGAGTCTTGTTTC 58.726 37.500 0.00 0.00 0.00 2.78
2309 2685 5.008712 GGCATACCTAGGTACTTTTCATTGC 59.991 44.000 24.07 23.43 41.75 3.56
2326 2702 3.470645 ACCTACATCGAAAGGCATACC 57.529 47.619 10.77 0.00 36.24 2.73
2327 2703 5.197682 AGTACCTACATCGAAAGGCATAC 57.802 43.478 10.77 7.68 36.24 2.39
2328 2704 5.864418 AAGTACCTACATCGAAAGGCATA 57.136 39.130 10.77 0.00 36.24 3.14
2329 2705 4.755266 AAGTACCTACATCGAAAGGCAT 57.245 40.909 10.77 0.00 36.24 4.40
2330 2706 4.951715 TCTAAGTACCTACATCGAAAGGCA 59.048 41.667 10.77 0.00 36.24 4.75
2331 2707 5.511234 TCTAAGTACCTACATCGAAAGGC 57.489 43.478 10.77 0.00 36.24 4.35
2332 2708 8.767478 TTTTTCTAAGTACCTACATCGAAAGG 57.233 34.615 9.59 9.59 38.93 3.11
2337 2713 8.762426 GCCTTATTTTTCTAAGTACCTACATCG 58.238 37.037 0.00 0.00 0.00 3.84
2338 2714 9.833917 AGCCTTATTTTTCTAAGTACCTACATC 57.166 33.333 0.00 0.00 0.00 3.06
2343 2719 9.582648 TTGAAAGCCTTATTTTTCTAAGTACCT 57.417 29.630 0.00 0.00 35.02 3.08
2357 2733 9.528489 TGTCCTTTAAGTATTTGAAAGCCTTAT 57.472 29.630 0.00 0.00 0.00 1.73
2358 2734 8.927675 TGTCCTTTAAGTATTTGAAAGCCTTA 57.072 30.769 0.00 0.00 0.00 2.69
2359 2735 7.724061 TCTGTCCTTTAAGTATTTGAAAGCCTT 59.276 33.333 0.00 0.00 0.00 4.35
2360 2736 7.175119 GTCTGTCCTTTAAGTATTTGAAAGCCT 59.825 37.037 0.00 0.00 0.00 4.58
2361 2737 7.175119 AGTCTGTCCTTTAAGTATTTGAAAGCC 59.825 37.037 0.00 0.00 0.00 4.35
2362 2738 8.017946 CAGTCTGTCCTTTAAGTATTTGAAAGC 58.982 37.037 0.00 0.00 0.00 3.51
2363 2739 9.057089 ACAGTCTGTCCTTTAAGTATTTGAAAG 57.943 33.333 0.00 0.00 0.00 2.62
2364 2740 8.836413 CACAGTCTGTCCTTTAAGTATTTGAAA 58.164 33.333 1.37 0.00 0.00 2.69
2365 2741 7.444183 CCACAGTCTGTCCTTTAAGTATTTGAA 59.556 37.037 1.37 0.00 0.00 2.69
2366 2742 6.934645 CCACAGTCTGTCCTTTAAGTATTTGA 59.065 38.462 1.37 0.00 0.00 2.69
2367 2743 6.934645 TCCACAGTCTGTCCTTTAAGTATTTG 59.065 38.462 1.37 0.00 0.00 2.32
2368 2744 7.074653 TCCACAGTCTGTCCTTTAAGTATTT 57.925 36.000 1.37 0.00 0.00 1.40
2369 2745 6.681729 TCCACAGTCTGTCCTTTAAGTATT 57.318 37.500 1.37 0.00 0.00 1.89
2370 2746 5.337652 GCTCCACAGTCTGTCCTTTAAGTAT 60.338 44.000 1.37 0.00 0.00 2.12
2371 2747 4.021368 GCTCCACAGTCTGTCCTTTAAGTA 60.021 45.833 1.37 0.00 0.00 2.24
2372 2748 3.244249 GCTCCACAGTCTGTCCTTTAAGT 60.244 47.826 1.37 0.00 0.00 2.24
2373 2749 3.244215 TGCTCCACAGTCTGTCCTTTAAG 60.244 47.826 1.37 0.00 0.00 1.85
2374 2750 2.703536 TGCTCCACAGTCTGTCCTTTAA 59.296 45.455 1.37 0.00 0.00 1.52
2375 2751 2.325484 TGCTCCACAGTCTGTCCTTTA 58.675 47.619 1.37 0.00 0.00 1.85
2376 2752 1.131638 TGCTCCACAGTCTGTCCTTT 58.868 50.000 1.37 0.00 0.00 3.11
2377 2753 1.071385 CTTGCTCCACAGTCTGTCCTT 59.929 52.381 1.37 0.00 0.00 3.36
2378 2754 0.683973 CTTGCTCCACAGTCTGTCCT 59.316 55.000 1.37 0.00 0.00 3.85
2379 2755 0.681733 TCTTGCTCCACAGTCTGTCC 59.318 55.000 1.37 0.00 0.00 4.02
2380 2756 2.028658 TCATCTTGCTCCACAGTCTGTC 60.029 50.000 1.37 0.00 0.00 3.51
2381 2757 1.973515 TCATCTTGCTCCACAGTCTGT 59.026 47.619 0.00 0.00 0.00 3.41
2382 2758 2.756840 TCATCTTGCTCCACAGTCTG 57.243 50.000 0.00 0.00 0.00 3.51
2383 2759 3.326006 TCTTTCATCTTGCTCCACAGTCT 59.674 43.478 0.00 0.00 0.00 3.24
2384 2760 3.668447 TCTTTCATCTTGCTCCACAGTC 58.332 45.455 0.00 0.00 0.00 3.51
2385 2761 3.777106 TCTTTCATCTTGCTCCACAGT 57.223 42.857 0.00 0.00 0.00 3.55
2386 2762 3.817084 TGTTCTTTCATCTTGCTCCACAG 59.183 43.478 0.00 0.00 0.00 3.66
2387 2763 3.817084 CTGTTCTTTCATCTTGCTCCACA 59.183 43.478 0.00 0.00 0.00 4.17
2388 2764 4.067896 TCTGTTCTTTCATCTTGCTCCAC 58.932 43.478 0.00 0.00 0.00 4.02
2389 2765 4.067896 GTCTGTTCTTTCATCTTGCTCCA 58.932 43.478 0.00 0.00 0.00 3.86
2390 2766 4.322567 AGTCTGTTCTTTCATCTTGCTCC 58.677 43.478 0.00 0.00 0.00 4.70
2391 2767 5.580297 CCTAGTCTGTTCTTTCATCTTGCTC 59.420 44.000 0.00 0.00 0.00 4.26
2392 2768 5.486526 CCTAGTCTGTTCTTTCATCTTGCT 58.513 41.667 0.00 0.00 0.00 3.91
2393 2769 4.633565 CCCTAGTCTGTTCTTTCATCTTGC 59.366 45.833 0.00 0.00 0.00 4.01
2394 2770 6.042638 TCCCTAGTCTGTTCTTTCATCTTG 57.957 41.667 0.00 0.00 0.00 3.02
2395 2771 6.688073 TTCCCTAGTCTGTTCTTTCATCTT 57.312 37.500 0.00 0.00 0.00 2.40
2396 2772 6.688073 TTTCCCTAGTCTGTTCTTTCATCT 57.312 37.500 0.00 0.00 0.00 2.90
2397 2773 7.745620 TTTTTCCCTAGTCTGTTCTTTCATC 57.254 36.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.