>input_sequence_80288
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-----------------------------------------------------------ATGTCGTCGAGCAGCCGGAGG
TCACGCACGCGGCGTGGCGGGAGCTCGTCGTCGATCTCGGAGGAGCAGATCTCCGAGCTGCTGTCCAAGCTGCAGGCGGT
GCTCCCGGAGTCCCAAGCTCGCAATGGTGCTCACAGAGTAAGTACTACCAACCAAACCAAAGTGGTAGTGGCTGCTTTAG
TAGCTGCTTTTCCATGAATAGTCAGCTGATCGCGACGCGCTAGTGCAGTGTGCAACCGTGCATGGCCGGAGTCACTGATG
AGAGTTAGCCTTCGTGC--TG-TTTCAGGGGTCGGCGGCGAGGGTGCTTGAGGAGACGTGCAGCTACATCCGGAGCCTGC
ACCGGGAGTTGGACGACCTGAGCGAGACGCTCGCCGCGCTGCTCGCCTCCGACGCCGTTACCGCCGAGCAGGCCGTCGTC
ATCAGGAGCCTCCTCATGTG----A-------------------------------------------------------
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>chr2D_1_TraesCS2D01G523200
TTGCAATAGAGACGTTGCTGCAGAAACCGATAGCATACAGTGAGCAGCAAGCAGCGATAAGCGTTTTCCTTAGAACAATA
CGTCCTTTTTTTTAGTACAATGCAACTTGTATTTTTCTACTTTTTTCCCCGAACTAAGATTCACTCTCCGTGTCGGTCGT
GACTTGAGAAAAAGAAAACCGCAGTCAACTTAGACATAGAGAGACGGTAAAATCGACGGTAAAATCCTATTTGGATTCAG
AAATGAAGCCTTCTCCATTGATACATGTTAAT----TTAATCTATGCATGATTATGCACTAGGAGACATTGATGATGTCT
TAATCTATCC-AGGACGATGCCCGTGCATGTGTGCTCAGCATGCATGAGCATCATGCAGATCTAGAAAGACATCCACA--
-----CTCCCCCCATGTGGAAG------CCCGCCGCACACAGTGCAGACAAAATCCAGAAGCCACACAACTAAACTAATA
CTACTAACAGAACAAATAAACAAGCATTTACTGGATCCAACTCGTACGTCCTACCTAGCCCTACGGCCCAAGCCCGGGCC
TAATTGAGC-----------------------------CGTCTACTCCTGCTATAGTACTCACCTCCGCTGCAACTGTCA
CTGAATAC------------------------------------------------------------------------
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------TACCACTCAGTACCAC------TGGTAGTAGAGTGGTGCTGCCGCTCTCCATGGCTCACCACGTCGTCTCT---
----------CCCTGTCACCCATTGACAGCCCTCGCTTTCTTCCTAACTAGCTC--------CCCCTC--TCCTCCTACC
TCGCTTCGTTAGGCTAGTTCG-----------------------------------------------------------
----CTTCGCTCTG----------CTAGCTGGTTCTCGGACCGGCAGAGCCCGC----------TATATATAGCTCTCGC
CTCGGCTGCAGCTACCACTCACCCGCACCAAAAACAAGCAATAAGCTAGCAGCTACACTCACCCAACTGCTAGTCTCCTT
---------AGCTAAGCTATATCTCCTA-CTGCTAGCTGCGTGTGGGTGTGGGCACT-CTCCGCTACAGCTCGATAGGTA
CGTACATAAGCTATCTAGCACG----AGCT---GTGAGCGAGCGAGCC----AGCAAGCATGTCGTCGAGCAGCCGGAGG
TCACGCACGCGGCGTGGCGGGAGCTCGTCGTCGATCTCGGAGGAGCAGATCTCCGAGCTGCTGTCCAAGCTGCAGGCGGT
GCTCCCGGAGTCCCAAGCTCGCAATGGTGCTCACAGAGTAAGTACTACCAACCAAACCAAAGTGGTAGTGGCTGCTTTAG
TAGCTGCTTTTCCATGAATAGTCAGCTGATCGCGACGCGCTAGTGCAGTGTGCAACCGTGCATGGCCGGAGTCACTGATG
AGAGTTAGCCTTCGTGC--TG-TTTCAGGGGTCGGCGGCGAGGGTGCTTGAGGAGACGTGCAGCTACATCCGGAGCCTGC
ACCGGGAGTTGGACGACCTGAGCGAGACGCTCGCCGCGCTGCTCGCCTCCGACGCCGTTACCGCCGAGCAGGCCGTCGTC
ATCAGGAGCCTCCTCATGTG----A-----------CCCTCCCACCGCCCTCCCATGGGCGGCGCACACGTATGTCTACC
AAGCTCTCCGGCGGCCCATGTGAGCATGCGCGTGAGGCGTGAGCGTTACGACGAGTACCTGCGTCGTGAGCCGAATTCGT
AAGGTAAAAATTCCGACCCCAAGTC---------CACCCCCTAAGACTATGCAATGTTTTATATAAAATTGCATCAAAGG
TGATAGCAAACCGTCTTAAGGTGGTGCGCCCAAATA----TTCAGCTAACCAGTCTGCATTTGTTCCAGGACGTTTGATA
AGGATGATATTGTTGTGGCTCTTCTGGGTGCTTGCACTTTATGAAGCAAAACA--GAGCTGTTAAGCGTTGTCATTGTGC
CCATAAGCTCCACATGATGAAGGCTTATGGCACGGTTGAATGGGACTACTTTGCAGGCAATTATGCTCAAATTGGGATTT
TCTGAGCGTTGGGCGAACATTGTAATGAGTCTTGTCAACTCGGTCTCGTACTCAATTTTGTTCAATGGTAAGAAACTTGA
AGAATACAAACAATCCAGAGGATTCGACAGGGAGATCCAATTTCCCTTTTCCTATTCTTTTTGGCAACAGAGGGCCTTTT
GTGCGTCCTTAAATCCAGAGTTCAGTCATCTTAGATTGGTATGATGCAAGTAGGCTCATCGGCACCACCTGTTAACCATC
TTTTATTTGCATATGACAGTTTATTGTTCTTAAAGGC--TAATGGTGTTCGGGCGACTGAGGCGTCAACCAGTTGGATGT
TTATTTCTAGGCTTCTGACCAACATATATTAATTCTAGCAAATCTTCTATCCTCTTCAGTAAAAGATGCACAACCACTAC
CTAAAAGGAAATTAAGATTTTGCTAGATGTCG-AAACAAGACTCGCAATGAAAAGTACCTAGGTATGCCTTTCGATGTAG
GTACTTAGAAAAATAAGGCTTTCAAATACTTAAAGGACAGACTGTGGAGCAAGATGAAAGAACAGACTAGGGAAAAAAAT
CAACTTTGTAAGCA
>chr2B_58
---------------------------------------------------------TAACCGTTTTCCTTAGAACAATA
CATCCTTTTTTTAC-TACAATGCAACTTGTATTTTTGTACTTTTTTCCC-GAACTAATATTCACTTTCCATGTCGGTCTT
GACTTGAGAGAAA-AAACCCGCAGTCAACTTAGACATAGAGAGACGGTAAAATC------------CTATTTGGATTCAG
AAATGAACCCTTATCCATTGATACATGTTCATTTAATTAGTCTATGCTTGATTATGCACTAGGAGACATTGATGATCTCT
TAATCTACCC-AGGACGATGCCCGTGCATGTGTGCCCAGCATGCAT------CATGCAGATCTAGAGAAACCTCCACAGT
CCACACTCCCCCCATGTGTAAG------CC--------------------AAATCCAGAGGCCACAGAACTAAACTAATA
CTACTAACAGAACAAATAAACAAACATTCACTGGATCCAACTCGTACGTCCTA----GACCTACGGCCCAAGCTCATGCC
CAATTGAGC-----------------------------GGTCTACTCCTGCTATAGTACTCACCTCGGCTGCAATTGTCA
CTGAATACTACTCCATTTTTAAATATATATTTTTTAAAAATTTCAACAAATAACTATATATGAAGCAAAATGAGTGAATC
TACACTTTAAAATATGTTTATATACATCAGTATGTGGTAATTCATTTGAAATCTCTAAAAAGATAAATATTTAGGAACGG
AGGGAGTACCACTCAGTACCAC------TGGTAGTAGAGTTGGGCTGCCGCTCTCCGTGGCTCACCACGTCGTCTCTGTC
CGTTGTCTCTCCCTGTCACACATTTACACCCCTCGCTGTCTTTCTAACTAGCTC--------CCACCTCTTCCTCCTACC
ACCTGCTAAGCTAGC----------------TTGCTTCCTCCCCTCTCTGATCCATCTTGCGCTGCGGCTACTCACCTCA
TCTTCTTCGCTCTG----------CTAGCTGCTTCTCGGGCCGG--------------------TATATATAGCTCTCGC
CTCGGCTGCAGCTGCCACTCACCTGCACCAAAAACAAGTTACAAGCTAGCAGCTACACTCACCCAACTGTTAGTCTGCTA
---------AG------------------CTGCTAGCTGCGTGTGGGAGTGGA-ACT-CTCCGCTACAGCTCGATAGGTA
CGTACATAAGTTATCTAGCACG----GGCT---GTGAGCCAGCGAGCGAC----CGAGCATGTCGTCGAGCAGCCGGAGG
TCACGCACGCGGCGCGCCGGGAGCTCGCCGTCCATCTCAGAGGAGCAGATCTCCGAGCTGCTGTCCAAGCTGCAGGCGCT
GCTCCCGGAGTCTCAAGCTCGCAATGGCGCTCACAGGGTGAGTAGAGT--ACCTAACCAAAGTAGCAGCTGCT-------
-------TTTTCCATGAATAGGCAGGTGATGGCGACGCGCGCG-----TCCAGT---GTGCATGCACGGAGTCACTGA--
-AAGTTAACCTTCGTGC--TGTTTGCAGGGTTCGGCGGCGAGGGTGCTGCAGGAGACGTGCAACTACATCCGGAGCCTGC
ACCGGGAGGTGGACGACCTGAGCGAGACGCTCGCGGCGCTGCTCGCCTCCGACGCCGTCACCGCCGAGCAGGCCGCCGTC
ATCAGGAGCCTCCTCATGTG----AGATGTGACCCACCCTCCCACCGTC-------CGGCGGCGCACACGTACGGCTACC
AAGCTCTCCGGCGGCCCATGTGAGCATGCCCGTGAGCGTTACA-------ACCAGTACCTGCGTTGTGAGCCCAATTCCC
AAGGTAAAAAATTCCAACTCTGTTGACCCAATTTCACCCCATAAGACTAGGCAATGTTTTATACAAAATTGCATCAAAGG
TGATAGCAAACCGTCTCAAACTGGTGCGCCCAGATATCATTTCAGCTGAGCAGTCGACATTTGTTCCAGGACAGATAAC-
-GGATGATATTATTGTGGT--TTCTGAGTGCTTGCACTTTATGAAGGGAAACATAGAGCTGTTAAGCATCGTCATTGTGC
CGTGAAGCTCCACATGGTGAAGGCTTGTGGCAGGGTTGAATGGCACTACTTTGAGGGTAACTATGCTCAAATTGGGATTT
TCTGAGCATTGGGCGAACATTGTAATGAGTCTTGTCAACTCGGTCTCATACTCAGTTTTGTTCAATGGTAATAAACTTGA
AGAATACAAAGGATCGAGAGGATCCGACAGGGAGATCCAAATTTTCTTTTCCTATTCTTTTCGGC------GGGCCTTTT
GTGAT----------CAGAGTTGAGTTGTCTCAGATTGGTGTGGTCCAAGTAGCGCCATCGGCGTCATCTATTG-----C
TTTTATTTGCAAATGACAGTTTATTGTTTTAAAGACTAGTAATGGTGTTGGGGCGACTGAGGTGTGAACCAGTTGGATGT
TTATTTCTAAGCTTCTGGCCAGC--ATATTAATTCTAGCAAATATTATATCTTCTTCAGTAAAGGATGCACAACCACTAC
CAAAGAGGAAATTAAGATTTTGCTAAATGTCCAAAACAAGACTCTCAA--------------------------------
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>chr2B_59
----------------------------------------------------------AACCGTTTTCCTTAGAACAATA
CATCCTTTTTTAA--TACAATGCAACTTGTATTTTTCTACCTTTTTCCC-GAACTAATATTCACTTTCCATGTCAGTCGT
GACTTGAGAAAGA-AAAA-CGCAGTCAACTTAGACATAGAGAGACGGTAAAATC------------CTGTTTGGATTCAG
AAATGAAGCCTTGTCCATTGATAGATGTTAAT----TTAATCTATGCAAGATTATGCACTAGGAGACATTGATGATCTCT
TAATCTATCC-AGGACGATGCCCGTGCATGTGTGCTCAGCATGCAT------CATGCAGATCTAGAGAAACCTCCACA--
-----CTCCCCCCATGTGTAAG------CCCGCCGCACACAGTGCAGACAAAATCCAGAGGCCACACAACTAAACTAATA
CTACTAACAGAACAAATAAACAAGCATTTACTGGATCCAACTCGTACGTCCTA----GCCCTACGGCCCAAGCCCAAGCC
CAATTGAGC-----------------------------GGTCTACTCTTGCTATAGTACTCATCACTGCTGCAACTGTCA
CTGAATACTACTCACTCCG----------TTTTGTAGAGATTTCAACAAGTCAATATATAGGGAGCAAAATGAGTGAATC
TACATTTTAAAATATGTTTATATACTTTTATATGTGATAGTTCATCTGAAATCTGTAAAAAAC-AAATATTTAGAAATGG
AGGGAGTACCACTCAGTACCAC------CGGTAGTAGAGTGGTGCTG-CGCTCTCCATGGCTCACCACGTCGTCTCT---
----------TCCTGTCACACATTTACAGCCCTCGCTGTCTTTCTAACTAGCTC--------CCTCCTCTTCCTCCTA--
--------------C----------------TTGCTTCCTCCCCTCTCTGATCCATCTTGCGCTGCGGCTACTCACCTCA
TCTTCTTCGCTCTG----------CTAGCTGCTTCTCGGG----------CCGC----------TATATATAGCTCTCGC
CTCGGCTGCAGCTGCCACTCACCTGCACCAAAAACAAGCAACAAGCTAGCAGCTACACTCACCCAACTGTTAGTCTGCTA
CTA--GCTTAGCTAAGCTATATCTCCTA-CTGCTAGCTGTGTGTGGGAGTGGGCACT-CTCCGCTACAGCTCGATAGGTA
CGTACATAAGCTCTCTAGCACG----GGCT---GTGGGCGAGCGAGCGA-T---CGAGCATGTCGTCGAGCAGCCGGAGG
TCACGCACGCGGCACGCCGGAAGCTCGACGTCCATCTCGGAGGACCAGATCTCCGAGCTGCTGTCCAAGCTGCAGGCGCT
GCTCCCGGAGTCCCAAGCTCGCAATGGCGCTCACAGGGTGAGTAGAGT--ACCGAACCAAAGTACCAGCTGCT-------
-------TTTCCCATGAATAGGCAGCTGATGGCGACGCGCGCC-----TCCAGT----------------TTCACTGA--
-GAGTTAGCCTTCGTAT--TGTTTGCAGGGTTCGGCGGCGAGGGTGCTGCAGGAGACGTGCAGCTACATCCGGAGCCTGC
ACCGGGAGGTGGACAACCTCAGCGAGACGCTCGCCGCGCTACTCGCCTCCGACGCCGTCACCGCCGAGCAAGCCGCCGTC
ATCAGGAGCCTCCTCATGTGACCCA-----------CCCTCCCACCGTCCTCCCATCGGCGGCGCACACGTACGTCCACC
AAGCTCTCCAGCGGCC----------------------------------------------------------------
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>chr2A_216
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-------------------------------------------------------ACCGTAAAATCCAATTTACATTCAC
AAACGAAAGCTTGTCTGTTGATATATAGTTAAATCAATATACTCCATATGATTATGCACTAGGAGACAGTGACGATTGCT
TAATCTATCCAGGGACGATGCCCTTGCATGTGTGCTCAGCATGTAG------CATGCAGATCTAGAGAGACCCCCACA--
-----CTCCCCCCATGTGTAAACCAAACCCCGCCGCACACAGTGCAGACAAAATCCACAGGCCACACAACTAAACTAAGA
AGGAAACA--AACAAATAAACAAGCATTTACCCGATCGATCTCGTACGTGCTAC---GTCCCACGGCCCAAGCCCACGCC
CAGCGCACCACAGCAGCAGCAATTGAGCCGCTCCGCCACGTCTACTAGTGCTATAGTACTCACCTCGGCTGCAACTGTCA
CTGAATGC------------------------------------------------------------------------
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------TACCACTCAGTACCACTGGTAGTGGTAGTAGAGTGGTGCTGCCGCTCTTCATGGCTCACCACGTCGTCTCT---
----------CCCTGTCACCCATTCACAGCCCTCGCTTTCTAACTAGAGCTCTCACCCCTCTCCTCCCCTCCCTCTCG--
--------------CCTCCTGCCTCGCTAAGCCGCTGGCTT----------------------------------CCTCA
TCTTCTTCGCCCTGGTACTGGTAGCTAGCTAGTTCTCGGA----------CCGGCCGCGCCCGTTATATATAGCTCTCGC
CTCGGCTGCAGCTGCCACTCACCTGCACCAAAAGGCA-------------AGCCACACTCGCCCCACAACTGCTAGCTAC
CATCTGCCTAGCTAAGCTATATCCTACACCTGCAAGCTGCGTGTGGGCACTCCCAGGCCTCAGCTACAGCTCGACACGTA
CGTGCATACGCTACCCACTGCGGGCTGTGACTCGTGAGCGAGCCGTCGAGT---CGAGCATGTCGTCGAGCAGCCGGAGG
TCACGCACGCGGCGCACCGGGAGCTCGCCGTCGATCTCGGAGGAGCAGATCTCCGAGCTGCTCTCCAAGCTGCAGGCGCT
GCTCCCGGAGTCCCAAGCCCGCAATGGAGCTCACAGGGTGAGTATC----------------------------------
TAGCTGATTTTCCATGAACAGCCAGCTGATGGCGACGTGC---------------------ATGCATGGAGTCACTGA--
-GACTTGGCGGGCTTCTGTTG-TTGCAGGGTTCGGCGGCGAGGGTGCTTCAGGAGACGTGCAGCTACATCCGGAGCCTGC
ACCGGGAGGTGGACGACCTGAGCGAGACGCTCGCCGCGCTGCTCGCCTCCGACGCCGTCACCGCCGAGCAGGCCGCCGTC
ATCAGGAGCCTCCTCATGTG----ATCCTC--------------------------------------------------
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>chr2D_228
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-------------------------------------------------------------------TATTTGGATTCTG
AAATAAAGCCTTCTTCATTGATACATGTTAAT----TTAATCTATGCATGATTATGCACTAGGAGACATTGATGATCTCT
TAATCTAT-CAAGGACGATGCTCGTGCATGTGTGCTCAGCATGCAT------CATGCAGATCTAGAGAAACCTCCACA--
-----CTCCCCCCATGTGTAAG------CCCGCCGCGCACAGTGCAGACAAAATCCAGAGGCCACACAACTAAACTAATA
CTACCAACAGAAGAAATAAACAAGCATTTACTGGATCGATCTCGTACGTCCTAACCAGCCCTACGGCCCAAGCCCGGGCC
CAATTGAGC-----------------------------CGTCTACTCCTGCTATAGTACTCACCTCGGCTGCAACTGTCA
CTGAATAC------------------------------------------------------------------------
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------TACCACTCAGTACCAC------TGGTAGTAGAGTGGTGCTGCCGCTCTCCATGGCTCACCACGTCGTCTCT---
----------CCCTGTCACCCATTTACAGCCCTCGCTTTCTTTCTAACTAGCTC--------CCTCCTCTTCCTCCTA--
--------------CCACCTGCTAAGCTAGCTTGCTTCCTCCCCTCTCTGATCCATCTTGCGCTGCGGCTACTCACCTCA
TCTTCTTCGCTCTG----------CTAGCTGCTTCTCGGG----------CCGC----------TATATATAGCTCTCGC
CTCGGCTGCAGCTGCCACTCACCTGCACCAAAAACAAGCAACAAGCTAGCAGCTACACTCACCCAACTGTTAGTCTGCTG
CTA--GCTTAGCTAAGCTATATCTCCTA-CTGCTAGCTGCGTGTGGGTGTGGGCACT-CTAAGCTACAGCTCGATACGTA
CGTTCATAAGCTGTCTAGCGCGCGCGGGCT---GTGAGCGAGCGATCGAGCGAGCGAGCATGTCGTCGAGCAGCCGAAGG
TCACGCACGCGGAGCGCCGGGAGCTCGCCGTCGATCTCGGAGGACCAGATCTCCGAGCTGCTGTCCAAGCTGCAGGCGCT
GCTCCCGGAGTCCCAAGCTCGCAATGGCGCTCACAGGGTGAGTAGAGT--ACCGAACCAAAGTACCAGCTGCT-------
-------TTTTCCGTGAATAGGCAGCTGATGGCGACGCGCGCGTCCAGTCCAGT----------------GTCACTGA--
-GAGTTAGCCTTCGTGT--TGTCTGCAGGGTTCGGCGGCGAGGGTGCTGCAGGAGACTTGCAGCTACATCCGGAGCCTGC
ACCGGGAGGTGGACGACCTCAGCGAGACCCTCGCCGCGCTGCTCGCCTCCGACGCCGTCACCGCCGAGCAGGCCGCCGTC
ATCAGGAGCCTCCTCATGTGACCCA-----------CCCTCCCACCGTCCTCCCATCGGCGGCGCACACGT---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------
-S----------SSS----------------------------------S-------S-------S---S----------
-------------S----------------------------------------S--S----------------------
----------------------------------------------------------------------------S---
----------------------------------------------SSSSSS--------------S----S--------
------------------S----------------------------------------S--------------------
-------------------------------------------------------S------------------------
S-----------------------------------------------------------------S-------------
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------------------------S-----------------S---------------------S-S-------------
S-SSSSSSSSSSSSSSSSSS------------------------------------------------------------
--------------------------------------------SSSSSS------------------------------
-------------S---------S-----------------S-------------------------------------S
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--------------------------S--------------------S-------S------------------------
--------------S-S----------S--------------------------------------------------S-
---------------------------S--------S--S----SSSSSS---S---------S-S--SS---SSSSSSS
------S--------------S--------S---------SS--S----SSSSSSSS-------SS------------SS
S-----------------------S-----S------------------S------------------------------
--------S-------------------------------------------------S----------------S----
-----------------------------------------------S--------S---------------S-------
-----------------------------S------SSS-SSSSSSSSSS--S-----------S-------S-----SS
----------S-S-S-S-S-SSS-S---------------S--------S-------------S----------------
----------------S--SS-----------S--------------S-S-----SS---------------SSS-S-SS
S----------S------SSS-----S-------------------SS-------------------S-S----------
-SSS------------S---------S-----S----------S---------SS--S--S-------------------
-------S---------------------------------------S------S----------------S--------
----------SS---S-------S----------------S--SS----------------S---SSSSSS---------
---SSSSSSSSSSSS-------S---SS---S--------S--S-S-------SSS-------SS--S--S--SSSSSS-
-----------S----------------S-S--SSSS------------S------------S--S--------------
---------S-------S---S-SS------------------S--S----S-----------S----------------
-S--S--------------------S-----S------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_35
---------------TGCTGCAGAAACCGATAGCA---------------------------------------------
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>reverse_1585
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----------------------------------------------------------------GCCGGAGTCACTGATG
AGAG----------------------------------------------------------------------------
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>forward_52
--------------------------------GCATACAGTGAGCAGCAAGC----------------------------
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>reverse_1885
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--------------------------------------------GTTACGACGAGTACCTGCGT----------------
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