Multiple sequence alignment - TraesCS2D01G522500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G522500 chr2D 100.000 2594 0 0 1 2594 611211014 611213607 0.000000e+00 4791.0
1 TraesCS2D01G522500 chr2D 94.118 51 3 0 785 835 316140169 316140119 7.700000e-11 78.7
2 TraesCS2D01G522500 chr2B 89.176 1783 130 27 1 1746 746103319 746101563 0.000000e+00 2165.0
3 TraesCS2D01G522500 chr2B 79.875 800 113 22 5 785 24858183 24857413 2.270000e-150 542.0
4 TraesCS2D01G522500 chr2B 92.806 278 15 5 1748 2023 10520103 10520377 5.200000e-107 398.0
5 TraesCS2D01G522500 chr2B 90.000 280 24 4 1746 2023 413669675 413669398 2.450000e-95 359.0
6 TraesCS2D01G522500 chr2B 90.000 280 22 5 1746 2023 10476962 10477237 8.830000e-95 357.0
7 TraesCS2D01G522500 chr2B 85.780 218 15 9 2393 2594 746101245 746101028 1.560000e-52 217.0
8 TraesCS2D01G522500 chr2B 97.872 47 1 0 785 831 721115464 721115418 5.950000e-12 82.4
9 TraesCS2D01G522500 chr2B 100.000 30 0 0 808 837 434670016 434669987 3.610000e-04 56.5
10 TraesCS2D01G522500 chr2A 92.010 776 56 4 972 1746 743538564 743539334 0.000000e+00 1085.0
11 TraesCS2D01G522500 chr2A 95.402 87 4 0 2055 2141 743539356 743539442 3.480000e-29 139.0
12 TraesCS2D01G522500 chr2A 81.148 122 7 6 2024 2145 743545913 743546018 1.650000e-12 84.2
13 TraesCS2D01G522500 chr2A 92.308 52 4 0 785 836 721476434 721476383 9.960000e-10 75.0
14 TraesCS2D01G522500 chr4B 83.968 761 83 16 31 782 113597521 113598251 0.000000e+00 693.0
15 TraesCS2D01G522500 chr6B 82.658 790 93 27 1 782 239292136 239292889 0.000000e+00 660.0
16 TraesCS2D01G522500 chr6B 85.122 531 50 8 25 546 116592643 116592133 1.380000e-142 516.0
17 TraesCS2D01G522500 chr3A 84.694 686 73 11 109 782 142557102 142557767 0.000000e+00 656.0
18 TraesCS2D01G522500 chr7D 82.134 806 94 24 5 785 592972630 592973410 0.000000e+00 645.0
19 TraesCS2D01G522500 chr7D 84.629 566 53 11 109 666 20326330 20325791 1.370000e-147 532.0
20 TraesCS2D01G522500 chr7D 81.238 533 68 10 1 522 71622292 71621781 4.020000e-108 401.0
21 TraesCS2D01G522500 chr7D 90.493 284 20 7 1745 2023 133675646 133675365 4.080000e-98 368.0
22 TraesCS2D01G522500 chr7D 89.474 285 23 7 1746 2025 133670470 133670188 1.140000e-93 353.0
23 TraesCS2D01G522500 chr7A 85.866 566 51 10 109 666 20443153 20442609 2.240000e-160 575.0
24 TraesCS2D01G522500 chr7A 85.160 438 52 9 341 771 10894340 10893909 1.100000e-118 436.0
25 TraesCS2D01G522500 chr7A 81.282 390 39 11 11 385 617681333 617681703 4.220000e-73 285.0
26 TraesCS2D01G522500 chr5B 83.033 666 81 12 5 657 511048128 511047482 2.240000e-160 575.0
27 TraesCS2D01G522500 chr5B 84.087 597 68 11 192 776 153172654 153173235 3.770000e-153 551.0
28 TraesCS2D01G522500 chr5B 89.085 284 21 10 1746 2023 498156710 498156989 6.870000e-91 344.0
29 TraesCS2D01G522500 chr5A 83.887 602 62 15 192 782 120784520 120785097 2.270000e-150 542.0
30 TraesCS2D01G522500 chr6A 86.354 491 52 9 303 788 599854586 599854106 2.960000e-144 521.0
31 TraesCS2D01G522500 chr6A 86.235 247 25 4 1 247 599854837 599854600 2.560000e-65 259.0
32 TraesCS2D01G522500 chr6D 84.928 418 36 10 2 411 453698643 453698245 5.200000e-107 398.0
33 TraesCS2D01G522500 chr3D 90.909 286 19 7 1743 2023 365913091 365913374 6.780000e-101 377.0
34 TraesCS2D01G522500 chr3D 91.135 282 19 6 1746 2023 365918286 365918565 6.780000e-101 377.0
35 TraesCS2D01G522500 chr5D 89.399 283 24 6 1745 2023 68900648 68900368 4.110000e-93 351.0
36 TraesCS2D01G522500 chr1D 85.271 258 29 5 1 258 465191713 465191465 9.210000e-65 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G522500 chr2D 611211014 611213607 2593 False 4791 4791 100.0000 1 2594 1 chr2D.!!$F1 2593
1 TraesCS2D01G522500 chr2B 746101028 746103319 2291 True 1191 2165 87.4780 1 2594 2 chr2B.!!$R5 2593
2 TraesCS2D01G522500 chr2B 24857413 24858183 770 True 542 542 79.8750 5 785 1 chr2B.!!$R1 780
3 TraesCS2D01G522500 chr2A 743538564 743539442 878 False 612 1085 93.7060 972 2141 2 chr2A.!!$F2 1169
4 TraesCS2D01G522500 chr4B 113597521 113598251 730 False 693 693 83.9680 31 782 1 chr4B.!!$F1 751
5 TraesCS2D01G522500 chr6B 239292136 239292889 753 False 660 660 82.6580 1 782 1 chr6B.!!$F1 781
6 TraesCS2D01G522500 chr6B 116592133 116592643 510 True 516 516 85.1220 25 546 1 chr6B.!!$R1 521
7 TraesCS2D01G522500 chr3A 142557102 142557767 665 False 656 656 84.6940 109 782 1 chr3A.!!$F1 673
8 TraesCS2D01G522500 chr7D 592972630 592973410 780 False 645 645 82.1340 5 785 1 chr7D.!!$F1 780
9 TraesCS2D01G522500 chr7D 20325791 20326330 539 True 532 532 84.6290 109 666 1 chr7D.!!$R1 557
10 TraesCS2D01G522500 chr7D 71621781 71622292 511 True 401 401 81.2380 1 522 1 chr7D.!!$R2 521
11 TraesCS2D01G522500 chr7A 20442609 20443153 544 True 575 575 85.8660 109 666 1 chr7A.!!$R2 557
12 TraesCS2D01G522500 chr5B 511047482 511048128 646 True 575 575 83.0330 5 657 1 chr5B.!!$R1 652
13 TraesCS2D01G522500 chr5B 153172654 153173235 581 False 551 551 84.0870 192 776 1 chr5B.!!$F1 584
14 TraesCS2D01G522500 chr5A 120784520 120785097 577 False 542 542 83.8870 192 782 1 chr5A.!!$F1 590
15 TraesCS2D01G522500 chr6A 599854106 599854837 731 True 390 521 86.2945 1 788 2 chr6A.!!$R1 787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1077 0.035881 CTTCTTGGACTCCAGCAGCA 59.964 55.0 0.0 0.0 33.81 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1965 0.034616 CTGCCTATCCTGCTGGCTAC 59.965 60.0 4.42 0.0 46.23 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 4.135493 GAACGCCGCGAGCTTGTC 62.135 66.667 21.79 3.17 40.39 3.18
292 312 2.785703 AGGACTACCTCCCACCCC 59.214 66.667 0.00 0.00 44.13 4.95
293 313 2.366569 GGACTACCTCCCACCCCC 60.367 72.222 0.00 0.00 31.83 5.40
580 629 1.790481 GCTCGTCAATTTTGGTAGCGC 60.790 52.381 0.00 0.00 0.00 5.92
710 772 0.934496 TGTCGTTGCAAGTTTCTCCG 59.066 50.000 0.00 0.00 0.00 4.63
711 773 0.935196 GTCGTTGCAAGTTTCTCCGT 59.065 50.000 0.00 0.00 0.00 4.69
712 774 0.934496 TCGTTGCAAGTTTCTCCGTG 59.066 50.000 0.00 0.00 0.00 4.94
714 776 1.531149 CGTTGCAAGTTTCTCCGTGAT 59.469 47.619 0.00 0.00 0.00 3.06
715 777 2.032030 CGTTGCAAGTTTCTCCGTGATT 60.032 45.455 0.00 0.00 0.00 2.57
716 778 3.300009 GTTGCAAGTTTCTCCGTGATTG 58.700 45.455 0.00 0.00 0.00 2.67
717 779 2.571212 TGCAAGTTTCTCCGTGATTGT 58.429 42.857 0.00 0.00 0.00 2.71
718 780 2.948979 TGCAAGTTTCTCCGTGATTGTT 59.051 40.909 0.00 0.00 0.00 2.83
763 832 1.337384 ACGGGGTATGATCTGCAGCA 61.337 55.000 9.47 2.06 0.00 4.41
819 904 1.601166 GTTGGCATTATACGGGGTCC 58.399 55.000 0.00 0.00 0.00 4.46
849 934 7.675195 AGAGATGCTCTAAGGATAGTCATTGAT 59.325 37.037 0.00 0.00 39.28 2.57
909 994 6.213677 GTCTACAGAATACCATATCGCAACA 58.786 40.000 0.00 0.00 0.00 3.33
920 1008 4.449068 CCATATCGCAACAGACTCCAATAC 59.551 45.833 0.00 0.00 0.00 1.89
941 1029 4.277476 ACTTCAACATCCACACAAAAGGA 58.723 39.130 0.00 0.00 38.50 3.36
989 1077 0.035881 CTTCTTGGACTCCAGCAGCA 59.964 55.000 0.00 0.00 33.81 4.41
1094 1182 2.583593 CGCTCTCGGGCAACTAGC 60.584 66.667 0.00 0.00 44.65 3.42
1205 1293 2.417933 CTGCAGGTCCGAATCTCAAAAG 59.582 50.000 5.57 0.00 0.00 2.27
1209 1297 1.661112 GGTCCGAATCTCAAAAGCTCG 59.339 52.381 0.00 0.00 0.00 5.03
1223 1311 0.687757 AGCTCGGCTTCAGGATGGTA 60.688 55.000 0.00 0.00 33.89 3.25
1248 1336 4.770287 GATGTAATCGCAGCTTCAATCAG 58.230 43.478 0.00 0.00 31.13 2.90
1253 1341 3.988379 TCGCAGCTTCAATCAGTTTTT 57.012 38.095 0.00 0.00 0.00 1.94
1254 1342 5.627499 ATCGCAGCTTCAATCAGTTTTTA 57.373 34.783 0.00 0.00 0.00 1.52
1255 1343 5.034554 TCGCAGCTTCAATCAGTTTTTAG 57.965 39.130 0.00 0.00 0.00 1.85
1256 1344 4.515191 TCGCAGCTTCAATCAGTTTTTAGT 59.485 37.500 0.00 0.00 0.00 2.24
1262 1350 7.805071 CAGCTTCAATCAGTTTTTAGTTACCTG 59.195 37.037 0.00 0.00 0.00 4.00
1264 1352 7.575414 TTCAATCAGTTTTTAGTTACCTGCA 57.425 32.000 0.00 0.00 0.00 4.41
1273 1361 2.566833 AGTTACCTGCATGTGCTGAA 57.433 45.000 12.65 0.00 41.71 3.02
1282 1370 4.242475 CTGCATGTGCTGAATCATTTTGT 58.758 39.130 6.55 0.00 41.71 2.83
1359 1447 3.450457 AGAAGTACATCAAGGAGGCAGAG 59.550 47.826 0.31 0.00 0.00 3.35
1414 1502 3.066064 CCGGAAATATTTGGTGCGATTCA 59.934 43.478 5.17 0.00 0.00 2.57
1425 1513 1.135199 GTGCGATTCAAGGTCGTAGGA 60.135 52.381 0.00 0.00 40.98 2.94
1428 1516 2.997986 GCGATTCAAGGTCGTAGGAAAA 59.002 45.455 0.00 0.00 40.98 2.29
1438 1526 2.603560 GTCGTAGGAAAAGAAGATGGCG 59.396 50.000 0.00 0.00 0.00 5.69
1440 1528 2.356135 GTAGGAAAAGAAGATGGCGCA 58.644 47.619 10.83 0.00 0.00 6.09
1443 1531 1.066152 GGAAAAGAAGATGGCGCATCC 59.934 52.381 10.83 0.00 41.36 3.51
1455 1543 2.000447 GGCGCATCCGTTATAAGATCC 59.000 52.381 10.83 0.00 36.67 3.36
1458 1546 2.661675 CGCATCCGTTATAAGATCCACG 59.338 50.000 0.00 0.00 0.00 4.94
1479 1567 3.684305 CGGTTGAGTATGAAGTTGATGCA 59.316 43.478 0.00 0.00 0.00 3.96
1501 1589 1.284198 AGCATGCCAAGAATGTCTCCT 59.716 47.619 15.66 0.00 0.00 3.69
1519 1607 1.677576 CCTTTGTCAGCACAGAAGCAA 59.322 47.619 0.00 0.00 36.85 3.91
1629 1719 4.670896 TGCATGTAGCTGCATAAGAGTA 57.329 40.909 17.42 1.83 46.76 2.59
1674 1764 0.819259 TGACTGTGGCAGCCAAGTTC 60.819 55.000 18.28 12.88 34.18 3.01
1746 1842 7.601886 TGCCTTTGGAATTAATGTTTGTATGTG 59.398 33.333 0.00 0.00 0.00 3.21
1748 1844 9.139174 CCTTTGGAATTAATGTTTGTATGTGTC 57.861 33.333 0.00 0.00 0.00 3.67
1750 1846 9.469807 TTTGGAATTAATGTTTGTATGTGTCAC 57.530 29.630 0.00 0.00 0.00 3.67
1752 1848 8.079203 TGGAATTAATGTTTGTATGTGTCACAC 58.921 33.333 8.08 0.00 34.56 3.82
1753 1849 7.540745 GGAATTAATGTTTGTATGTGTCACACC 59.459 37.037 8.08 2.62 32.73 4.16
1754 1850 7.759489 ATTAATGTTTGTATGTGTCACACCT 57.241 32.000 8.08 0.00 32.73 4.00
1755 1851 5.437289 AATGTTTGTATGTGTCACACCTG 57.563 39.130 8.08 0.00 32.73 4.00
1756 1852 2.616376 TGTTTGTATGTGTCACACCTGC 59.384 45.455 8.08 0.00 32.73 4.85
1757 1853 2.616376 GTTTGTATGTGTCACACCTGCA 59.384 45.455 8.08 2.25 32.73 4.41
1758 1854 2.857186 TGTATGTGTCACACCTGCAT 57.143 45.000 8.08 0.00 32.73 3.96
1759 1855 2.698803 TGTATGTGTCACACCTGCATC 58.301 47.619 8.08 0.00 32.73 3.91
1760 1856 2.038295 TGTATGTGTCACACCTGCATCA 59.962 45.455 8.08 0.00 32.73 3.07
1761 1857 1.527034 ATGTGTCACACCTGCATCAC 58.473 50.000 8.08 0.00 32.73 3.06
1762 1858 0.534877 TGTGTCACACCTGCATCACC 60.535 55.000 5.21 0.00 32.73 4.02
1763 1859 0.534877 GTGTCACACCTGCATCACCA 60.535 55.000 0.00 0.00 0.00 4.17
1764 1860 0.250424 TGTCACACCTGCATCACCAG 60.250 55.000 0.00 0.00 0.00 4.00
1765 1861 0.250467 GTCACACCTGCATCACCAGT 60.250 55.000 0.00 0.00 0.00 4.00
1766 1862 0.250424 TCACACCTGCATCACCAGTG 60.250 55.000 0.00 0.00 0.00 3.66
1767 1863 1.073722 ACACCTGCATCACCAGTGG 59.926 57.895 7.91 7.91 0.00 4.00
1768 1864 1.073722 CACCTGCATCACCAGTGGT 59.926 57.895 9.70 9.70 35.62 4.16
1779 1875 2.747460 CAGTGGTGGATGCCGTGG 60.747 66.667 0.00 0.00 0.00 4.94
1780 1876 2.927856 AGTGGTGGATGCCGTGGA 60.928 61.111 0.00 0.00 0.00 4.02
1781 1877 2.746277 GTGGTGGATGCCGTGGAC 60.746 66.667 0.00 0.00 0.00 4.02
1782 1878 4.386951 TGGTGGATGCCGTGGACG 62.387 66.667 0.00 0.00 39.44 4.79
1783 1879 4.388499 GGTGGATGCCGTGGACGT 62.388 66.667 0.00 0.00 37.74 4.34
1784 1880 3.118454 GTGGATGCCGTGGACGTG 61.118 66.667 0.00 0.00 37.74 4.49
1785 1881 3.621805 TGGATGCCGTGGACGTGT 61.622 61.111 0.00 0.00 37.74 4.49
1786 1882 3.118454 GGATGCCGTGGACGTGTG 61.118 66.667 0.00 0.00 37.74 3.82
1787 1883 2.048597 GATGCCGTGGACGTGTGA 60.049 61.111 0.00 0.00 37.74 3.58
1788 1884 2.048222 ATGCCGTGGACGTGTGAG 60.048 61.111 0.00 0.00 37.74 3.51
1789 1885 3.589654 ATGCCGTGGACGTGTGAGG 62.590 63.158 0.00 0.00 37.74 3.86
1790 1886 4.295119 GCCGTGGACGTGTGAGGT 62.295 66.667 0.00 0.00 37.74 3.85
1791 1887 2.355837 CCGTGGACGTGTGAGGTG 60.356 66.667 0.00 0.00 37.74 4.00
1792 1888 2.355837 CGTGGACGTGTGAGGTGG 60.356 66.667 0.00 0.00 34.11 4.61
1793 1889 2.030562 GTGGACGTGTGAGGTGGG 59.969 66.667 0.00 0.00 0.00 4.61
1794 1890 2.123208 TGGACGTGTGAGGTGGGA 60.123 61.111 0.00 0.00 0.00 4.37
1795 1891 2.342648 GGACGTGTGAGGTGGGAC 59.657 66.667 0.00 0.00 0.00 4.46
1796 1892 2.342648 GACGTGTGAGGTGGGACC 59.657 66.667 0.00 0.00 38.99 4.46
1797 1893 3.236003 GACGTGTGAGGTGGGACCC 62.236 68.421 2.45 2.45 39.75 4.46
1798 1894 4.373116 CGTGTGAGGTGGGACCCG 62.373 72.222 5.91 0.00 39.75 5.28
1799 1895 4.016706 GTGTGAGGTGGGACCCGG 62.017 72.222 5.91 0.00 39.75 5.73
1820 1916 4.517663 CCAGTTGGCATTGGTCCA 57.482 55.556 9.69 0.00 0.00 4.02
1821 1917 1.966762 CCAGTTGGCATTGGTCCAC 59.033 57.895 9.69 0.00 32.45 4.02
1822 1918 0.540365 CCAGTTGGCATTGGTCCACT 60.540 55.000 9.69 0.00 32.45 4.00
1823 1919 1.331214 CAGTTGGCATTGGTCCACTT 58.669 50.000 0.00 0.00 32.45 3.16
1824 1920 1.000060 CAGTTGGCATTGGTCCACTTG 60.000 52.381 0.00 0.00 32.45 3.16
1825 1921 1.039856 GTTGGCATTGGTCCACTTGT 58.960 50.000 0.00 0.00 32.45 3.16
1826 1922 2.158534 AGTTGGCATTGGTCCACTTGTA 60.159 45.455 0.00 0.00 32.45 2.41
1827 1923 2.625790 GTTGGCATTGGTCCACTTGTAA 59.374 45.455 0.00 0.00 32.45 2.41
1828 1924 2.513753 TGGCATTGGTCCACTTGTAAG 58.486 47.619 0.00 0.00 0.00 2.34
1829 1925 1.202348 GGCATTGGTCCACTTGTAAGC 59.798 52.381 0.00 0.00 0.00 3.09
1830 1926 1.135689 GCATTGGTCCACTTGTAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
1831 1927 1.135689 CATTGGTCCACTTGTAAGCGC 60.136 52.381 0.00 0.00 0.00 5.92
1832 1928 0.179043 TTGGTCCACTTGTAAGCGCA 60.179 50.000 11.47 0.00 0.00 6.09
1833 1929 0.179043 TGGTCCACTTGTAAGCGCAA 60.179 50.000 11.47 0.00 0.00 4.85
1834 1930 0.237498 GGTCCACTTGTAAGCGCAAC 59.763 55.000 11.47 8.23 0.00 4.17
1835 1931 0.941542 GTCCACTTGTAAGCGCAACA 59.058 50.000 11.47 11.26 0.00 3.33
1836 1932 1.535462 GTCCACTTGTAAGCGCAACAT 59.465 47.619 11.47 0.00 0.00 2.71
1837 1933 2.031157 GTCCACTTGTAAGCGCAACATT 60.031 45.455 11.47 0.00 0.00 2.71
1838 1934 2.031245 TCCACTTGTAAGCGCAACATTG 60.031 45.455 11.47 12.98 0.00 2.82
1839 1935 2.031245 CCACTTGTAAGCGCAACATTGA 60.031 45.455 11.47 0.00 0.00 2.57
1840 1936 3.228749 CACTTGTAAGCGCAACATTGAG 58.771 45.455 11.47 10.51 0.00 3.02
1848 1944 2.787259 GCAACATTGAGCGTGTGTG 58.213 52.632 0.00 0.00 0.00 3.82
1849 1945 0.661187 GCAACATTGAGCGTGTGTGG 60.661 55.000 0.00 0.00 0.00 4.17
1850 1946 0.661187 CAACATTGAGCGTGTGTGGC 60.661 55.000 0.00 0.00 0.00 5.01
1851 1947 0.819259 AACATTGAGCGTGTGTGGCT 60.819 50.000 0.00 0.00 45.00 4.75
1852 1948 1.208358 CATTGAGCGTGTGTGGCTG 59.792 57.895 0.00 0.00 41.72 4.85
1853 1949 1.968017 ATTGAGCGTGTGTGGCTGG 60.968 57.895 0.00 0.00 41.72 4.85
1854 1950 4.624364 TGAGCGTGTGTGGCTGGG 62.624 66.667 0.00 0.00 41.72 4.45
1855 1951 4.626081 GAGCGTGTGTGGCTGGGT 62.626 66.667 0.00 0.00 41.72 4.51
1856 1952 4.189580 AGCGTGTGTGGCTGGGTT 62.190 61.111 0.00 0.00 39.77 4.11
1857 1953 2.281208 GCGTGTGTGGCTGGGTTA 60.281 61.111 0.00 0.00 0.00 2.85
1858 1954 1.674322 GCGTGTGTGGCTGGGTTAT 60.674 57.895 0.00 0.00 0.00 1.89
1859 1955 0.391927 GCGTGTGTGGCTGGGTTATA 60.392 55.000 0.00 0.00 0.00 0.98
1860 1956 1.946747 GCGTGTGTGGCTGGGTTATAA 60.947 52.381 0.00 0.00 0.00 0.98
1861 1957 2.006888 CGTGTGTGGCTGGGTTATAAG 58.993 52.381 0.00 0.00 0.00 1.73
1862 1958 2.365582 GTGTGTGGCTGGGTTATAAGG 58.634 52.381 0.00 0.00 0.00 2.69
1863 1959 1.340600 TGTGTGGCTGGGTTATAAGGC 60.341 52.381 0.00 0.00 39.33 4.35
1864 1960 0.257616 TGTGGCTGGGTTATAAGGCC 59.742 55.000 0.00 0.00 42.73 5.19
1866 1962 0.550914 TGGCTGGGTTATAAGGCCAG 59.449 55.000 5.01 0.00 46.35 4.85
1867 1963 2.720659 GCTGGGTTATAAGGCCAGC 58.279 57.895 5.01 0.00 45.05 4.85
1868 1964 1.166531 GCTGGGTTATAAGGCCAGCG 61.167 60.000 5.01 0.00 43.03 5.18
1869 1965 0.535102 CTGGGTTATAAGGCCAGCGG 60.535 60.000 5.01 0.00 0.00 5.52
1870 1966 1.276140 TGGGTTATAAGGCCAGCGGT 61.276 55.000 5.01 0.00 0.00 5.68
1871 1967 0.760572 GGGTTATAAGGCCAGCGGTA 59.239 55.000 5.01 0.00 0.00 4.02
1872 1968 1.270678 GGGTTATAAGGCCAGCGGTAG 60.271 57.143 5.01 0.00 0.00 3.18
1873 1969 1.509703 GTTATAAGGCCAGCGGTAGC 58.490 55.000 5.01 0.00 45.58 3.58
1880 1976 4.845580 CCAGCGGTAGCCAGCAGG 62.846 72.222 0.00 0.00 46.67 4.85
1881 1977 3.774528 CAGCGGTAGCCAGCAGGA 61.775 66.667 0.00 0.00 46.67 3.86
1882 1978 2.765807 AGCGGTAGCCAGCAGGAT 60.766 61.111 0.00 0.00 46.67 3.24
1883 1979 1.457643 AGCGGTAGCCAGCAGGATA 60.458 57.895 0.00 0.00 46.67 2.59
1884 1980 1.005630 GCGGTAGCCAGCAGGATAG 60.006 63.158 0.00 0.00 36.22 2.08
1885 1981 1.668294 CGGTAGCCAGCAGGATAGG 59.332 63.158 0.00 0.00 36.22 2.57
1890 1986 2.112718 CCAGCAGGATAGGCAGGC 59.887 66.667 0.00 0.00 36.89 4.85
1891 1987 2.749584 CCAGCAGGATAGGCAGGCA 61.750 63.158 0.00 0.00 36.89 4.75
1892 1988 1.454976 CAGCAGGATAGGCAGGCAT 59.545 57.895 0.00 0.00 0.00 4.40
1893 1989 0.889638 CAGCAGGATAGGCAGGCATG 60.890 60.000 0.00 0.00 0.00 4.06
1894 1990 1.058428 AGCAGGATAGGCAGGCATGA 61.058 55.000 0.62 0.00 0.00 3.07
1895 1991 0.037877 GCAGGATAGGCAGGCATGAT 59.962 55.000 0.62 0.00 0.00 2.45
1896 1992 1.547223 GCAGGATAGGCAGGCATGATT 60.547 52.381 0.62 0.00 0.00 2.57
1897 1993 2.872732 CAGGATAGGCAGGCATGATTT 58.127 47.619 0.62 0.00 0.00 2.17
1898 1994 2.557056 CAGGATAGGCAGGCATGATTTG 59.443 50.000 0.62 0.00 0.00 2.32
1899 1995 2.176364 AGGATAGGCAGGCATGATTTGT 59.824 45.455 0.62 0.00 0.00 2.83
1900 1996 3.395607 AGGATAGGCAGGCATGATTTGTA 59.604 43.478 0.62 0.00 0.00 2.41
1901 1997 4.043812 AGGATAGGCAGGCATGATTTGTAT 59.956 41.667 0.62 0.00 0.00 2.29
1902 1998 4.397417 GGATAGGCAGGCATGATTTGTATC 59.603 45.833 0.62 0.32 0.00 2.24
1903 1999 3.589951 AGGCAGGCATGATTTGTATCT 57.410 42.857 0.62 0.00 0.00 1.98
1904 2000 4.712051 AGGCAGGCATGATTTGTATCTA 57.288 40.909 0.62 0.00 0.00 1.98
1905 2001 5.052693 AGGCAGGCATGATTTGTATCTAA 57.947 39.130 0.62 0.00 0.00 2.10
1906 2002 5.448654 AGGCAGGCATGATTTGTATCTAAA 58.551 37.500 0.62 0.00 0.00 1.85
1907 2003 5.300286 AGGCAGGCATGATTTGTATCTAAAC 59.700 40.000 0.62 0.00 0.00 2.01
1908 2004 5.300286 GGCAGGCATGATTTGTATCTAAACT 59.700 40.000 0.62 0.00 0.00 2.66
1909 2005 6.204359 GCAGGCATGATTTGTATCTAAACTG 58.796 40.000 0.62 0.00 0.00 3.16
1910 2006 6.732154 CAGGCATGATTTGTATCTAAACTGG 58.268 40.000 0.00 0.00 0.00 4.00
1911 2007 6.543465 CAGGCATGATTTGTATCTAAACTGGA 59.457 38.462 0.00 0.00 0.00 3.86
1912 2008 7.230108 CAGGCATGATTTGTATCTAAACTGGAT 59.770 37.037 0.00 0.00 0.00 3.41
1913 2009 7.446625 AGGCATGATTTGTATCTAAACTGGATC 59.553 37.037 0.00 0.00 0.00 3.36
1914 2010 7.308830 GGCATGATTTGTATCTAAACTGGATCC 60.309 40.741 4.20 4.20 0.00 3.36
1915 2011 7.308830 GCATGATTTGTATCTAAACTGGATCCC 60.309 40.741 9.90 0.00 0.00 3.85
1916 2012 7.451731 TGATTTGTATCTAAACTGGATCCCT 57.548 36.000 9.90 0.00 0.00 4.20
1917 2013 7.509546 TGATTTGTATCTAAACTGGATCCCTC 58.490 38.462 9.90 0.00 0.00 4.30
1918 2014 6.884472 TTTGTATCTAAACTGGATCCCTCA 57.116 37.500 9.90 0.00 0.00 3.86
1919 2015 5.871396 TGTATCTAAACTGGATCCCTCAC 57.129 43.478 9.90 0.00 0.00 3.51
1920 2016 4.654262 TGTATCTAAACTGGATCCCTCACC 59.346 45.833 9.90 0.00 0.00 4.02
1921 2017 3.491766 TCTAAACTGGATCCCTCACCT 57.508 47.619 9.90 0.00 0.00 4.00
1922 2018 4.620086 TCTAAACTGGATCCCTCACCTA 57.380 45.455 9.90 0.00 0.00 3.08
1923 2019 4.287552 TCTAAACTGGATCCCTCACCTAC 58.712 47.826 9.90 0.00 0.00 3.18
1924 2020 2.950990 AACTGGATCCCTCACCTACT 57.049 50.000 9.90 0.00 0.00 2.57
1925 2021 2.463047 ACTGGATCCCTCACCTACTC 57.537 55.000 9.90 0.00 0.00 2.59
1926 2022 1.062810 ACTGGATCCCTCACCTACTCC 60.063 57.143 9.90 0.00 0.00 3.85
1927 2023 1.219213 CTGGATCCCTCACCTACTCCT 59.781 57.143 9.90 0.00 0.00 3.69
1928 2024 1.062886 TGGATCCCTCACCTACTCCTG 60.063 57.143 9.90 0.00 0.00 3.86
1929 2025 1.062810 GGATCCCTCACCTACTCCTGT 60.063 57.143 0.00 0.00 0.00 4.00
1930 2026 2.177233 GGATCCCTCACCTACTCCTGTA 59.823 54.545 0.00 0.00 0.00 2.74
1931 2027 2.822707 TCCCTCACCTACTCCTGTAC 57.177 55.000 0.00 0.00 0.00 2.90
1932 2028 2.285707 TCCCTCACCTACTCCTGTACT 58.714 52.381 0.00 0.00 0.00 2.73
1933 2029 2.241685 TCCCTCACCTACTCCTGTACTC 59.758 54.545 0.00 0.00 0.00 2.59
1934 2030 2.242708 CCCTCACCTACTCCTGTACTCT 59.757 54.545 0.00 0.00 0.00 3.24
1935 2031 3.547746 CCTCACCTACTCCTGTACTCTC 58.452 54.545 0.00 0.00 0.00 3.20
1936 2032 3.054287 CCTCACCTACTCCTGTACTCTCA 60.054 52.174 0.00 0.00 0.00 3.27
1937 2033 4.385865 CCTCACCTACTCCTGTACTCTCAT 60.386 50.000 0.00 0.00 0.00 2.90
1938 2034 4.783055 TCACCTACTCCTGTACTCTCATC 58.217 47.826 0.00 0.00 0.00 2.92
1939 2035 4.475381 TCACCTACTCCTGTACTCTCATCT 59.525 45.833 0.00 0.00 0.00 2.90
1940 2036 5.044772 TCACCTACTCCTGTACTCTCATCTT 60.045 44.000 0.00 0.00 0.00 2.40
1941 2037 5.298276 CACCTACTCCTGTACTCTCATCTTC 59.702 48.000 0.00 0.00 0.00 2.87
1942 2038 4.825085 CCTACTCCTGTACTCTCATCTTCC 59.175 50.000 0.00 0.00 0.00 3.46
1943 2039 4.601406 ACTCCTGTACTCTCATCTTCCT 57.399 45.455 0.00 0.00 0.00 3.36
1944 2040 4.941713 ACTCCTGTACTCTCATCTTCCTT 58.058 43.478 0.00 0.00 0.00 3.36
1945 2041 4.709397 ACTCCTGTACTCTCATCTTCCTTG 59.291 45.833 0.00 0.00 0.00 3.61
1946 2042 4.026744 TCCTGTACTCTCATCTTCCTTGG 58.973 47.826 0.00 0.00 0.00 3.61
1947 2043 3.431486 CCTGTACTCTCATCTTCCTTGGC 60.431 52.174 0.00 0.00 0.00 4.52
1948 2044 3.173151 TGTACTCTCATCTTCCTTGGCA 58.827 45.455 0.00 0.00 0.00 4.92
1949 2045 3.582647 TGTACTCTCATCTTCCTTGGCAA 59.417 43.478 0.00 0.00 0.00 4.52
1950 2046 3.347077 ACTCTCATCTTCCTTGGCAAG 57.653 47.619 20.31 20.31 0.00 4.01
1951 2047 2.909006 ACTCTCATCTTCCTTGGCAAGA 59.091 45.455 28.18 9.06 34.37 3.02
1952 2048 3.328931 ACTCTCATCTTCCTTGGCAAGAA 59.671 43.478 28.18 17.77 33.57 2.52
1953 2049 4.202503 ACTCTCATCTTCCTTGGCAAGAAA 60.203 41.667 28.18 14.24 33.57 2.52
1954 2050 4.330250 TCTCATCTTCCTTGGCAAGAAAG 58.670 43.478 28.18 23.48 33.57 2.62
1955 2051 2.821969 TCATCTTCCTTGGCAAGAAAGC 59.178 45.455 28.18 0.00 33.57 3.51
1956 2052 2.664402 TCTTCCTTGGCAAGAAAGCT 57.336 45.000 28.18 0.00 34.17 3.74
1957 2053 3.788227 TCTTCCTTGGCAAGAAAGCTA 57.212 42.857 28.18 6.16 34.17 3.32
1958 2054 4.307032 TCTTCCTTGGCAAGAAAGCTAT 57.693 40.909 28.18 0.00 34.17 2.97
1959 2055 4.265073 TCTTCCTTGGCAAGAAAGCTATC 58.735 43.478 28.18 0.00 34.17 2.08
1960 2056 4.018960 TCTTCCTTGGCAAGAAAGCTATCT 60.019 41.667 28.18 0.00 34.17 1.98
1961 2057 4.307032 TCCTTGGCAAGAAAGCTATCTT 57.693 40.909 28.18 0.00 40.23 2.40
1962 2058 4.265073 TCCTTGGCAAGAAAGCTATCTTC 58.735 43.478 28.18 0.00 37.56 2.87
1963 2059 3.379688 CCTTGGCAAGAAAGCTATCTTCC 59.620 47.826 28.18 0.00 37.56 3.46
1964 2060 3.004752 TGGCAAGAAAGCTATCTTCCC 57.995 47.619 0.00 0.00 37.70 3.97
1965 2061 2.308570 TGGCAAGAAAGCTATCTTCCCA 59.691 45.455 0.00 0.00 43.43 4.37
1966 2062 3.245229 TGGCAAGAAAGCTATCTTCCCAA 60.245 43.478 0.00 0.00 42.84 4.12
1967 2063 3.379688 GGCAAGAAAGCTATCTTCCCAAG 59.620 47.826 0.00 0.00 37.24 3.61
1968 2064 4.013050 GCAAGAAAGCTATCTTCCCAAGT 58.987 43.478 0.00 0.00 37.56 3.16
1969 2065 4.095632 GCAAGAAAGCTATCTTCCCAAGTC 59.904 45.833 0.00 0.00 37.56 3.01
1970 2066 4.495690 AGAAAGCTATCTTCCCAAGTCC 57.504 45.455 0.00 0.00 0.00 3.85
1971 2067 3.201045 AGAAAGCTATCTTCCCAAGTCCC 59.799 47.826 0.00 0.00 0.00 4.46
1972 2068 2.270434 AGCTATCTTCCCAAGTCCCA 57.730 50.000 0.00 0.00 0.00 4.37
1973 2069 2.781667 AGCTATCTTCCCAAGTCCCAT 58.218 47.619 0.00 0.00 0.00 4.00
1974 2070 2.708325 AGCTATCTTCCCAAGTCCCATC 59.292 50.000 0.00 0.00 0.00 3.51
1975 2071 2.708325 GCTATCTTCCCAAGTCCCATCT 59.292 50.000 0.00 0.00 0.00 2.90
1976 2072 3.244387 GCTATCTTCCCAAGTCCCATCTC 60.244 52.174 0.00 0.00 0.00 2.75
1977 2073 2.342406 TCTTCCCAAGTCCCATCTCA 57.658 50.000 0.00 0.00 0.00 3.27
1978 2074 2.850833 TCTTCCCAAGTCCCATCTCAT 58.149 47.619 0.00 0.00 0.00 2.90
1979 2075 2.774234 TCTTCCCAAGTCCCATCTCATC 59.226 50.000 0.00 0.00 0.00 2.92
1980 2076 1.511613 TCCCAAGTCCCATCTCATCC 58.488 55.000 0.00 0.00 0.00 3.51
1981 2077 0.475906 CCCAAGTCCCATCTCATCCC 59.524 60.000 0.00 0.00 0.00 3.85
1982 2078 0.475906 CCAAGTCCCATCTCATCCCC 59.524 60.000 0.00 0.00 0.00 4.81
1983 2079 1.516110 CAAGTCCCATCTCATCCCCT 58.484 55.000 0.00 0.00 0.00 4.79
1984 2080 1.849039 CAAGTCCCATCTCATCCCCTT 59.151 52.381 0.00 0.00 0.00 3.95
1985 2081 2.243221 CAAGTCCCATCTCATCCCCTTT 59.757 50.000 0.00 0.00 0.00 3.11
1986 2082 2.131023 AGTCCCATCTCATCCCCTTTC 58.869 52.381 0.00 0.00 0.00 2.62
1987 2083 1.143889 GTCCCATCTCATCCCCTTTCC 59.856 57.143 0.00 0.00 0.00 3.13
1988 2084 0.480252 CCCATCTCATCCCCTTTCCC 59.520 60.000 0.00 0.00 0.00 3.97
1989 2085 1.527457 CCATCTCATCCCCTTTCCCT 58.473 55.000 0.00 0.00 0.00 4.20
1990 2086 1.855599 CCATCTCATCCCCTTTCCCTT 59.144 52.381 0.00 0.00 0.00 3.95
1991 2087 2.158549 CCATCTCATCCCCTTTCCCTTC 60.159 54.545 0.00 0.00 0.00 3.46
1992 2088 2.668850 TCTCATCCCCTTTCCCTTCT 57.331 50.000 0.00 0.00 0.00 2.85
1993 2089 2.200081 TCTCATCCCCTTTCCCTTCTG 58.800 52.381 0.00 0.00 0.00 3.02
1994 2090 2.200081 CTCATCCCCTTTCCCTTCTGA 58.800 52.381 0.00 0.00 0.00 3.27
1995 2091 2.782341 CTCATCCCCTTTCCCTTCTGAT 59.218 50.000 0.00 0.00 0.00 2.90
1996 2092 2.780010 TCATCCCCTTTCCCTTCTGATC 59.220 50.000 0.00 0.00 0.00 2.92
1997 2093 1.596496 TCCCCTTTCCCTTCTGATCC 58.404 55.000 0.00 0.00 0.00 3.36
1998 2094 0.181350 CCCCTTTCCCTTCTGATCCG 59.819 60.000 0.00 0.00 0.00 4.18
1999 2095 1.204146 CCCTTTCCCTTCTGATCCGA 58.796 55.000 0.00 0.00 0.00 4.55
2000 2096 1.771255 CCCTTTCCCTTCTGATCCGAT 59.229 52.381 0.00 0.00 0.00 4.18
2001 2097 2.224402 CCCTTTCCCTTCTGATCCGATC 60.224 54.545 1.01 1.01 0.00 3.69
2002 2098 2.703007 CCTTTCCCTTCTGATCCGATCT 59.297 50.000 9.78 0.00 0.00 2.75
2003 2099 3.494048 CCTTTCCCTTCTGATCCGATCTG 60.494 52.174 9.78 9.15 0.00 2.90
2004 2100 2.755952 TCCCTTCTGATCCGATCTGA 57.244 50.000 12.58 12.58 35.77 3.27
2005 2101 2.591923 TCCCTTCTGATCCGATCTGAG 58.408 52.381 15.22 10.80 38.28 3.35
2006 2102 2.175715 TCCCTTCTGATCCGATCTGAGA 59.824 50.000 15.22 8.94 38.28 3.27
2007 2103 3.164268 CCCTTCTGATCCGATCTGAGAT 58.836 50.000 15.22 0.00 38.28 2.75
2008 2104 3.056678 CCCTTCTGATCCGATCTGAGATG 60.057 52.174 15.22 9.90 38.28 2.90
2009 2105 3.825585 CCTTCTGATCCGATCTGAGATGA 59.174 47.826 15.22 0.00 38.28 2.92
2010 2106 4.463539 CCTTCTGATCCGATCTGAGATGAT 59.536 45.833 15.22 0.00 38.28 2.45
2011 2107 5.388408 TTCTGATCCGATCTGAGATGATG 57.612 43.478 15.22 0.00 38.28 3.07
2012 2108 4.660168 TCTGATCCGATCTGAGATGATGA 58.340 43.478 12.58 0.00 33.94 2.92
2013 2109 4.701171 TCTGATCCGATCTGAGATGATGAG 59.299 45.833 12.58 1.34 33.94 2.90
2014 2110 4.405548 TGATCCGATCTGAGATGATGAGT 58.594 43.478 0.00 0.00 0.00 3.41
2015 2111 4.831710 TGATCCGATCTGAGATGATGAGTT 59.168 41.667 0.00 0.00 0.00 3.01
2016 2112 4.844998 TCCGATCTGAGATGATGAGTTC 57.155 45.455 0.00 0.00 0.00 3.01
2017 2113 3.251972 TCCGATCTGAGATGATGAGTTCG 59.748 47.826 0.00 0.00 0.00 3.95
2018 2114 3.004210 CCGATCTGAGATGATGAGTTCGT 59.996 47.826 0.00 0.00 30.44 3.85
2019 2115 3.973767 CGATCTGAGATGATGAGTTCGTG 59.026 47.826 0.00 0.00 0.00 4.35
2020 2116 4.260948 CGATCTGAGATGATGAGTTCGTGA 60.261 45.833 0.00 0.00 0.00 4.35
2021 2117 4.362932 TCTGAGATGATGAGTTCGTGAC 57.637 45.455 0.00 0.00 0.00 3.67
2022 2118 3.758554 TCTGAGATGATGAGTTCGTGACA 59.241 43.478 0.00 0.00 0.00 3.58
2023 2119 4.102035 TGAGATGATGAGTTCGTGACAG 57.898 45.455 0.00 0.00 0.00 3.51
2024 2120 3.507622 TGAGATGATGAGTTCGTGACAGT 59.492 43.478 0.00 0.00 0.00 3.55
2025 2121 4.700213 TGAGATGATGAGTTCGTGACAGTA 59.300 41.667 0.00 0.00 0.00 2.74
2026 2122 5.358160 TGAGATGATGAGTTCGTGACAGTAT 59.642 40.000 0.00 0.00 0.00 2.12
2027 2123 5.586339 AGATGATGAGTTCGTGACAGTATG 58.414 41.667 0.00 0.00 46.00 2.39
2052 2148 9.578576 TGTTTTAGACTGTACTAGTTTCTAGGA 57.421 33.333 0.00 0.00 40.53 2.94
2069 2165 3.685139 AGGAGTACCTGTCAACATGTG 57.315 47.619 0.00 0.00 45.92 3.21
2181 2299 4.803329 ATGAACCCTGAAATATGAGCCT 57.197 40.909 0.00 0.00 0.00 4.58
2187 2307 7.292356 TGAACCCTGAAATATGAGCCTATAAGA 59.708 37.037 0.00 0.00 0.00 2.10
2215 2335 2.567615 GGAGTTTCTAACCCTGAGCTCA 59.432 50.000 17.19 17.19 0.00 4.26
2223 2343 1.002990 CCCTGAGCTCACATGCACA 60.003 57.895 13.74 0.00 34.99 4.57
2233 2353 1.202710 TCACATGCACACGGGTAAACT 60.203 47.619 0.00 0.00 0.00 2.66
2320 2440 1.000274 GCTTCACCTCCGTGCAAAAAT 60.000 47.619 0.00 0.00 40.04 1.82
2335 2455 6.451054 CGTGCAAAAATTCGTGATGTAATGTC 60.451 38.462 0.00 0.00 0.00 3.06
2338 2458 7.598118 TGCAAAAATTCGTGATGTAATGTCATT 59.402 29.630 3.06 3.06 0.00 2.57
2339 2459 8.434661 GCAAAAATTCGTGATGTAATGTCATTT 58.565 29.630 2.79 0.00 0.00 2.32
2343 2463 5.448926 TCGTGATGTAATGTCATTTGTCG 57.551 39.130 2.79 2.09 0.00 4.35
2344 2464 4.926832 TCGTGATGTAATGTCATTTGTCGT 59.073 37.500 2.79 0.00 0.00 4.34
2345 2465 5.015108 CGTGATGTAATGTCATTTGTCGTG 58.985 41.667 2.79 0.00 0.00 4.35
2346 2466 5.323900 GTGATGTAATGTCATTTGTCGTGG 58.676 41.667 2.79 0.00 0.00 4.94
2347 2467 3.822594 TGTAATGTCATTTGTCGTGGC 57.177 42.857 2.79 0.00 0.00 5.01
2348 2468 2.486203 TGTAATGTCATTTGTCGTGGCC 59.514 45.455 2.79 0.00 0.00 5.36
2349 2469 1.909700 AATGTCATTTGTCGTGGCCT 58.090 45.000 3.32 0.00 0.00 5.19
2350 2470 1.167851 ATGTCATTTGTCGTGGCCTG 58.832 50.000 3.32 0.00 0.00 4.85
2351 2471 0.107643 TGTCATTTGTCGTGGCCTGA 59.892 50.000 3.32 0.00 0.00 3.86
2352 2472 1.234821 GTCATTTGTCGTGGCCTGAA 58.765 50.000 3.32 0.00 0.00 3.02
2353 2473 1.069227 GTCATTTGTCGTGGCCTGAAC 60.069 52.381 3.32 0.00 0.00 3.18
2354 2474 0.950836 CATTTGTCGTGGCCTGAACA 59.049 50.000 3.32 2.02 0.00 3.18
2355 2475 1.336440 CATTTGTCGTGGCCTGAACAA 59.664 47.619 3.32 8.78 0.00 2.83
2356 2476 1.464734 TTTGTCGTGGCCTGAACAAA 58.535 45.000 19.48 19.48 0.00 2.83
2357 2477 1.464734 TTGTCGTGGCCTGAACAAAA 58.535 45.000 3.32 0.00 0.00 2.44
2358 2478 1.464734 TGTCGTGGCCTGAACAAAAA 58.535 45.000 3.32 0.00 0.00 1.94
2359 2479 2.028130 TGTCGTGGCCTGAACAAAAAT 58.972 42.857 3.32 0.00 0.00 1.82
2360 2480 3.215151 TGTCGTGGCCTGAACAAAAATA 58.785 40.909 3.32 0.00 0.00 1.40
2361 2481 3.632604 TGTCGTGGCCTGAACAAAAATAA 59.367 39.130 3.32 0.00 0.00 1.40
2362 2482 4.098044 TGTCGTGGCCTGAACAAAAATAAA 59.902 37.500 3.32 0.00 0.00 1.40
2363 2483 5.044558 GTCGTGGCCTGAACAAAAATAAAA 58.955 37.500 3.32 0.00 0.00 1.52
2364 2484 5.520649 GTCGTGGCCTGAACAAAAATAAAAA 59.479 36.000 3.32 0.00 0.00 1.94
2387 2507 8.496707 AAAATCAATGCTTCAAAAAGACAAGT 57.503 26.923 0.00 0.00 34.14 3.16
2388 2508 9.598517 AAAATCAATGCTTCAAAAAGACAAGTA 57.401 25.926 0.00 0.00 34.14 2.24
2389 2509 9.768662 AAATCAATGCTTCAAAAAGACAAGTAT 57.231 25.926 0.00 0.00 34.14 2.12
2390 2510 9.768662 AATCAATGCTTCAAAAAGACAAGTATT 57.231 25.926 0.00 0.00 34.08 1.89
2391 2511 8.578308 TCAATGCTTCAAAAAGACAAGTATTG 57.422 30.769 12.72 12.72 44.82 1.90
2453 2573 2.292016 TGGTTATGTTTGCTGGTTCACG 59.708 45.455 0.00 0.00 0.00 4.35
2515 2641 5.373981 TTTCAAAATAATGCCGTAACCGT 57.626 34.783 0.00 0.00 0.00 4.83
2559 2695 4.060667 CCCCACCCCACCACCATC 62.061 72.222 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.994995 GCTCGTACTCGTACTCGACA 59.005 55.000 5.76 0.00 41.35 4.35
90 91 0.044330 CGCTCGTACTCGTACTCGAC 60.044 60.000 5.76 0.00 41.35 4.20
91 92 1.746727 GCGCTCGTACTCGTACTCGA 61.747 60.000 0.00 0.00 44.12 4.04
92 93 1.366262 GCGCTCGTACTCGTACTCG 60.366 63.158 0.00 7.15 38.33 4.18
93 94 1.366262 CGCGCTCGTACTCGTACTC 60.366 63.158 5.56 0.00 38.33 2.59
94 95 1.750572 CTCGCGCTCGTACTCGTACT 61.751 60.000 5.56 0.00 38.33 2.73
95 96 1.366262 CTCGCGCTCGTACTCGTAC 60.366 63.158 5.56 0.00 38.33 3.67
190 191 0.814457 CTCTCTCTTGACCGGAGTGG 59.186 60.000 9.46 0.00 46.41 4.00
228 229 1.807573 CCTCGAGCTTGAAGGCGAC 60.808 63.158 6.99 0.00 37.29 5.19
234 235 2.261671 GACGGCCTCGAGCTTGAA 59.738 61.111 6.99 0.00 43.05 2.69
317 337 1.688197 TCCATGATGATGCGCTCTACA 59.312 47.619 9.73 8.60 0.00 2.74
751 820 2.034104 ATTCGTGTGCTGCAGATCAT 57.966 45.000 20.43 0.00 0.00 2.45
763 832 1.670811 GATTGCGGGATGAATTCGTGT 59.329 47.619 4.51 0.00 0.00 4.49
826 911 6.817641 CCATCAATGACTATCCTTAGAGCATC 59.182 42.308 0.00 0.00 0.00 3.91
827 912 6.499699 TCCATCAATGACTATCCTTAGAGCAT 59.500 38.462 0.00 0.00 0.00 3.79
828 913 5.840693 TCCATCAATGACTATCCTTAGAGCA 59.159 40.000 0.00 0.00 0.00 4.26
849 934 3.938334 CACAACGTGATTACATCCATCCA 59.062 43.478 0.00 0.00 35.23 3.41
909 994 5.013079 TGTGGATGTTGAAGTATTGGAGTCT 59.987 40.000 0.00 0.00 0.00 3.24
920 1008 4.580167 TCTCCTTTTGTGTGGATGTTGAAG 59.420 41.667 0.00 0.00 0.00 3.02
941 1029 3.244215 TGCGAGGAATTCTGTTCAAGTCT 60.244 43.478 5.23 0.00 0.00 3.24
989 1077 0.539051 CCCTTCCATTGCTCTCTCGT 59.461 55.000 0.00 0.00 0.00 4.18
1205 1293 0.530870 GTACCATCCTGAAGCCGAGC 60.531 60.000 0.00 0.00 0.00 5.03
1209 1297 2.171448 ACATCTGTACCATCCTGAAGCC 59.829 50.000 0.00 0.00 0.00 4.35
1223 1311 3.251479 TGAAGCTGCGATTACATCTGT 57.749 42.857 0.00 0.00 0.00 3.41
1255 1343 2.749076 TGATTCAGCACATGCAGGTAAC 59.251 45.455 2.51 0.00 45.16 2.50
1256 1344 3.070476 TGATTCAGCACATGCAGGTAA 57.930 42.857 2.51 0.00 45.16 2.85
1262 1350 5.290158 CCTAACAAAATGATTCAGCACATGC 59.710 40.000 0.00 0.00 42.49 4.06
1264 1352 6.626623 GCTCCTAACAAAATGATTCAGCACAT 60.627 38.462 0.00 0.00 0.00 3.21
1273 1361 4.843728 TCGGAAGCTCCTAACAAAATGAT 58.156 39.130 0.00 0.00 33.30 2.45
1282 1370 2.253610 TCTTGGTTCGGAAGCTCCTAA 58.746 47.619 19.42 5.98 33.30 2.69
1306 1394 4.369182 ACTACGTTGAACTTCTCCTTGTG 58.631 43.478 3.44 0.00 0.00 3.33
1359 1447 2.523453 GAAAGCCTCCCTCCACCGTC 62.523 65.000 0.00 0.00 0.00 4.79
1414 1502 4.833390 CCATCTTCTTTTCCTACGACCTT 58.167 43.478 0.00 0.00 0.00 3.50
1425 1513 0.734889 CGGATGCGCCATCTTCTTTT 59.265 50.000 4.18 0.00 40.39 2.27
1428 1516 0.464036 TAACGGATGCGCCATCTTCT 59.536 50.000 6.51 0.12 40.39 2.85
1443 1531 4.679662 ACTCAACCGTGGATCTTATAACG 58.320 43.478 0.00 0.00 35.85 3.18
1455 1543 4.436050 GCATCAACTTCATACTCAACCGTG 60.436 45.833 0.00 0.00 0.00 4.94
1458 1546 4.937620 TCTGCATCAACTTCATACTCAACC 59.062 41.667 0.00 0.00 0.00 3.77
1461 1549 4.186926 GCTCTGCATCAACTTCATACTCA 58.813 43.478 0.00 0.00 0.00 3.41
1479 1567 2.641305 GAGACATTCTTGGCATGCTCT 58.359 47.619 18.92 9.65 30.96 4.09
1501 1589 2.034939 CCATTGCTTCTGTGCTGACAAA 59.965 45.455 0.00 0.00 0.00 2.83
1519 1607 1.478288 GGCCTCAGCAATAGAAGCCAT 60.478 52.381 0.00 0.00 41.29 4.40
1585 1673 5.607119 TGTTCTTCTGAATTTTACTCGGC 57.393 39.130 0.00 0.00 34.40 5.54
1629 1719 3.809832 CAGTTGGACACTTCGTCTTTCAT 59.190 43.478 0.00 0.00 44.70 2.57
1654 1744 0.178981 AACTTGGCTGCCACAGTCAT 60.179 50.000 23.30 10.89 45.75 3.06
1674 1764 1.339631 TGGTACAGGGGAATTTGCTCG 60.340 52.381 0.00 0.00 0.00 5.03
1746 1842 0.250467 ACTGGTGATGCAGGTGTGAC 60.250 55.000 0.00 0.00 0.00 3.67
1748 1844 1.239296 CCACTGGTGATGCAGGTGTG 61.239 60.000 1.93 0.00 0.00 3.82
1750 1846 1.073722 ACCACTGGTGATGCAGGTG 59.926 57.895 0.00 0.00 32.98 4.00
1760 1856 3.249189 ACGGCATCCACCACTGGT 61.249 61.111 0.00 0.00 38.90 4.00
1761 1857 2.747460 CACGGCATCCACCACTGG 60.747 66.667 0.00 0.00 39.23 4.00
1762 1858 2.747460 CCACGGCATCCACCACTG 60.747 66.667 0.00 0.00 0.00 3.66
1763 1859 2.927856 TCCACGGCATCCACCACT 60.928 61.111 0.00 0.00 0.00 4.00
1764 1860 2.746277 GTCCACGGCATCCACCAC 60.746 66.667 0.00 0.00 0.00 4.16
1765 1861 4.386951 CGTCCACGGCATCCACCA 62.387 66.667 0.00 0.00 35.37 4.17
1766 1862 4.388499 ACGTCCACGGCATCCACC 62.388 66.667 3.81 0.00 44.95 4.61
1767 1863 3.118454 CACGTCCACGGCATCCAC 61.118 66.667 3.81 0.00 44.95 4.02
1768 1864 3.621805 ACACGTCCACGGCATCCA 61.622 61.111 3.81 0.00 44.95 3.41
1769 1865 3.118454 CACACGTCCACGGCATCC 61.118 66.667 3.81 0.00 44.95 3.51
1770 1866 2.048597 TCACACGTCCACGGCATC 60.049 61.111 3.81 0.00 44.95 3.91
1771 1867 2.048222 CTCACACGTCCACGGCAT 60.048 61.111 3.81 0.00 44.95 4.40
1772 1868 4.293648 CCTCACACGTCCACGGCA 62.294 66.667 3.81 0.00 44.95 5.69
1773 1869 4.295119 ACCTCACACGTCCACGGC 62.295 66.667 3.81 0.00 44.95 5.68
1774 1870 2.355837 CACCTCACACGTCCACGG 60.356 66.667 3.81 0.00 44.95 4.94
1775 1871 2.355837 CCACCTCACACGTCCACG 60.356 66.667 0.00 0.00 46.33 4.94
1776 1872 2.030562 CCCACCTCACACGTCCAC 59.969 66.667 0.00 0.00 0.00 4.02
1777 1873 2.123208 TCCCACCTCACACGTCCA 60.123 61.111 0.00 0.00 0.00 4.02
1778 1874 2.342648 GTCCCACCTCACACGTCC 59.657 66.667 0.00 0.00 0.00 4.79
1779 1875 2.342648 GGTCCCACCTCACACGTC 59.657 66.667 0.00 0.00 34.73 4.34
1780 1876 3.239253 GGGTCCCACCTCACACGT 61.239 66.667 1.78 0.00 38.64 4.49
1781 1877 4.373116 CGGGTCCCACCTCACACG 62.373 72.222 9.12 0.00 38.64 4.49
1782 1878 4.016706 CCGGGTCCCACCTCACAC 62.017 72.222 9.12 0.00 38.64 3.82
1803 1899 0.540365 AGTGGACCAATGCCAACTGG 60.540 55.000 0.00 0.00 37.12 4.00
1804 1900 1.000060 CAAGTGGACCAATGCCAACTG 60.000 52.381 0.00 0.00 37.12 3.16
1805 1901 1.331214 CAAGTGGACCAATGCCAACT 58.669 50.000 0.00 0.00 37.12 3.16
1806 1902 1.039856 ACAAGTGGACCAATGCCAAC 58.960 50.000 0.00 0.00 37.12 3.77
1807 1903 2.666272 TACAAGTGGACCAATGCCAA 57.334 45.000 0.00 0.00 37.12 4.52
1808 1904 2.513753 CTTACAAGTGGACCAATGCCA 58.486 47.619 0.00 0.00 0.00 4.92
1809 1905 1.202348 GCTTACAAGTGGACCAATGCC 59.798 52.381 0.00 0.00 0.00 4.40
1810 1906 1.135689 CGCTTACAAGTGGACCAATGC 60.136 52.381 0.00 0.00 33.00 3.56
1811 1907 1.135689 GCGCTTACAAGTGGACCAATG 60.136 52.381 0.00 0.78 37.03 2.82
1812 1908 1.165270 GCGCTTACAAGTGGACCAAT 58.835 50.000 0.00 0.00 37.03 3.16
1813 1909 0.179043 TGCGCTTACAAGTGGACCAA 60.179 50.000 9.73 0.00 37.03 3.67
1814 1910 0.179043 TTGCGCTTACAAGTGGACCA 60.179 50.000 9.73 0.00 36.59 4.02
1815 1911 0.237498 GTTGCGCTTACAAGTGGACC 59.763 55.000 9.73 0.00 36.59 4.46
1816 1912 0.941542 TGTTGCGCTTACAAGTGGAC 59.058 50.000 9.73 0.00 36.59 4.02
1817 1913 1.890876 ATGTTGCGCTTACAAGTGGA 58.109 45.000 17.45 0.00 37.03 4.02
1818 1914 2.031245 TCAATGTTGCGCTTACAAGTGG 60.031 45.455 17.45 9.16 37.03 4.00
1819 1915 3.228749 CTCAATGTTGCGCTTACAAGTG 58.771 45.455 17.45 17.02 39.48 3.16
1820 1916 2.350772 GCTCAATGTTGCGCTTACAAGT 60.351 45.455 17.45 8.05 36.08 3.16
1821 1917 2.245096 GCTCAATGTTGCGCTTACAAG 58.755 47.619 17.45 12.41 36.08 3.16
1822 1918 1.399599 CGCTCAATGTTGCGCTTACAA 60.400 47.619 17.45 0.00 45.50 2.41
1823 1919 0.165727 CGCTCAATGTTGCGCTTACA 59.834 50.000 16.21 16.21 45.50 2.41
1824 1920 2.916583 CGCTCAATGTTGCGCTTAC 58.083 52.632 9.73 7.68 45.50 2.34
1830 1926 0.661187 CCACACACGCTCAATGTTGC 60.661 55.000 0.00 0.00 0.00 4.17
1831 1927 0.661187 GCCACACACGCTCAATGTTG 60.661 55.000 0.00 0.00 0.00 3.33
1832 1928 0.819259 AGCCACACACGCTCAATGTT 60.819 50.000 0.00 0.00 0.00 2.71
1833 1929 1.227943 AGCCACACACGCTCAATGT 60.228 52.632 0.00 0.00 0.00 2.71
1834 1930 1.208358 CAGCCACACACGCTCAATG 59.792 57.895 0.00 0.00 33.17 2.82
1835 1931 1.968017 CCAGCCACACACGCTCAAT 60.968 57.895 0.00 0.00 33.17 2.57
1836 1932 2.591429 CCAGCCACACACGCTCAA 60.591 61.111 0.00 0.00 33.17 3.02
1837 1933 4.624364 CCCAGCCACACACGCTCA 62.624 66.667 0.00 0.00 33.17 4.26
1838 1934 2.725203 TAACCCAGCCACACACGCTC 62.725 60.000 0.00 0.00 33.17 5.03
1839 1935 2.124507 ATAACCCAGCCACACACGCT 62.125 55.000 0.00 0.00 36.91 5.07
1840 1936 0.391927 TATAACCCAGCCACACACGC 60.392 55.000 0.00 0.00 0.00 5.34
1841 1937 2.006888 CTTATAACCCAGCCACACACG 58.993 52.381 0.00 0.00 0.00 4.49
1842 1938 2.365582 CCTTATAACCCAGCCACACAC 58.634 52.381 0.00 0.00 0.00 3.82
1843 1939 1.340600 GCCTTATAACCCAGCCACACA 60.341 52.381 0.00 0.00 0.00 3.72
1844 1940 1.389555 GCCTTATAACCCAGCCACAC 58.610 55.000 0.00 0.00 0.00 3.82
1845 1941 0.257616 GGCCTTATAACCCAGCCACA 59.742 55.000 0.00 0.00 43.32 4.17
1846 1942 3.111405 GGCCTTATAACCCAGCCAC 57.889 57.895 0.00 0.00 43.32 5.01
1848 1944 3.421567 CTGGCCTTATAACCCAGCC 57.578 57.895 3.32 8.58 44.13 4.85
1850 1946 0.535102 CCGCTGGCCTTATAACCCAG 60.535 60.000 17.46 17.46 46.95 4.45
1851 1947 1.276140 ACCGCTGGCCTTATAACCCA 61.276 55.000 3.32 1.34 0.00 4.51
1852 1948 0.760572 TACCGCTGGCCTTATAACCC 59.239 55.000 3.32 0.00 0.00 4.11
1853 1949 1.876837 GCTACCGCTGGCCTTATAACC 60.877 57.143 3.32 0.00 0.00 2.85
1854 1950 1.509703 GCTACCGCTGGCCTTATAAC 58.490 55.000 3.32 0.00 0.00 1.89
1855 1951 0.395312 GGCTACCGCTGGCCTTATAA 59.605 55.000 3.32 0.00 44.48 0.98
1856 1952 2.055299 GGCTACCGCTGGCCTTATA 58.945 57.895 3.32 0.00 44.48 0.98
1857 1953 2.829592 GGCTACCGCTGGCCTTAT 59.170 61.111 3.32 0.00 44.48 1.73
1863 1959 4.845580 CCTGCTGGCTACCGCTGG 62.846 72.222 0.00 10.24 36.53 4.85
1864 1960 1.748329 TATCCTGCTGGCTACCGCTG 61.748 60.000 4.42 0.00 36.09 5.18
1865 1961 1.457643 TATCCTGCTGGCTACCGCT 60.458 57.895 4.42 0.00 36.09 5.52
1866 1962 1.005630 CTATCCTGCTGGCTACCGC 60.006 63.158 4.42 0.00 0.00 5.68
1867 1963 1.668294 CCTATCCTGCTGGCTACCG 59.332 63.158 4.42 0.00 0.00 4.02
1868 1964 1.373059 GCCTATCCTGCTGGCTACC 59.627 63.158 4.42 0.00 43.05 3.18
1869 1965 0.034616 CTGCCTATCCTGCTGGCTAC 59.965 60.000 4.42 0.00 46.23 3.58
1870 1966 1.123861 CCTGCCTATCCTGCTGGCTA 61.124 60.000 4.42 0.00 46.23 3.93
1871 1967 2.450320 CCTGCCTATCCTGCTGGCT 61.450 63.158 4.42 0.00 46.23 4.75
1872 1968 2.112718 CCTGCCTATCCTGCTGGC 59.887 66.667 4.42 0.00 46.26 4.85
1873 1969 2.065470 ATGCCTGCCTATCCTGCTGG 62.065 60.000 2.58 2.58 46.97 4.85
1874 1970 0.889638 CATGCCTGCCTATCCTGCTG 60.890 60.000 0.00 0.00 0.00 4.41
1875 1971 1.058428 TCATGCCTGCCTATCCTGCT 61.058 55.000 0.00 0.00 0.00 4.24
1876 1972 0.037877 ATCATGCCTGCCTATCCTGC 59.962 55.000 0.00 0.00 0.00 4.85
1877 1973 2.557056 CAAATCATGCCTGCCTATCCTG 59.443 50.000 0.00 0.00 0.00 3.86
1878 1974 2.176364 ACAAATCATGCCTGCCTATCCT 59.824 45.455 0.00 0.00 0.00 3.24
1879 1975 2.590821 ACAAATCATGCCTGCCTATCC 58.409 47.619 0.00 0.00 0.00 2.59
1880 1976 5.251764 AGATACAAATCATGCCTGCCTATC 58.748 41.667 0.00 0.00 34.28 2.08
1881 1977 5.252586 AGATACAAATCATGCCTGCCTAT 57.747 39.130 0.00 0.00 34.28 2.57
1882 1978 4.712051 AGATACAAATCATGCCTGCCTA 57.288 40.909 0.00 0.00 34.28 3.93
1883 1979 3.589951 AGATACAAATCATGCCTGCCT 57.410 42.857 0.00 0.00 34.28 4.75
1884 1980 5.300286 AGTTTAGATACAAATCATGCCTGCC 59.700 40.000 0.00 0.00 34.28 4.85
1885 1981 6.204359 CAGTTTAGATACAAATCATGCCTGC 58.796 40.000 0.00 0.00 34.28 4.85
1886 1982 6.543465 TCCAGTTTAGATACAAATCATGCCTG 59.457 38.462 0.00 0.00 34.28 4.85
1887 1983 6.662755 TCCAGTTTAGATACAAATCATGCCT 58.337 36.000 0.00 0.00 34.28 4.75
1888 1984 6.942532 TCCAGTTTAGATACAAATCATGCC 57.057 37.500 0.00 0.00 34.28 4.40
1889 1985 7.308830 GGGATCCAGTTTAGATACAAATCATGC 60.309 40.741 15.23 0.00 34.28 4.06
1890 1986 7.941238 AGGGATCCAGTTTAGATACAAATCATG 59.059 37.037 15.23 0.00 34.28 3.07
1891 1987 8.050316 AGGGATCCAGTTTAGATACAAATCAT 57.950 34.615 15.23 0.00 34.28 2.45
1892 1988 7.127186 TGAGGGATCCAGTTTAGATACAAATCA 59.873 37.037 15.23 0.00 34.28 2.57
1893 1989 7.442666 GTGAGGGATCCAGTTTAGATACAAATC 59.557 40.741 15.23 0.00 0.00 2.17
1894 1990 7.283329 GTGAGGGATCCAGTTTAGATACAAAT 58.717 38.462 15.23 0.00 0.00 2.32
1895 1991 6.352737 GGTGAGGGATCCAGTTTAGATACAAA 60.353 42.308 15.23 0.00 0.00 2.83
1896 1992 5.130477 GGTGAGGGATCCAGTTTAGATACAA 59.870 44.000 15.23 0.00 0.00 2.41
1897 1993 4.654262 GGTGAGGGATCCAGTTTAGATACA 59.346 45.833 15.23 0.00 0.00 2.29
1898 1994 4.902448 AGGTGAGGGATCCAGTTTAGATAC 59.098 45.833 15.23 0.00 0.00 2.24
1899 1995 5.157770 AGGTGAGGGATCCAGTTTAGATA 57.842 43.478 15.23 0.00 0.00 1.98
1900 1996 4.014273 AGGTGAGGGATCCAGTTTAGAT 57.986 45.455 15.23 0.00 0.00 1.98
1901 1997 3.491766 AGGTGAGGGATCCAGTTTAGA 57.508 47.619 15.23 0.00 0.00 2.10
1902 1998 4.290942 AGTAGGTGAGGGATCCAGTTTAG 58.709 47.826 15.23 0.00 0.00 1.85
1903 1999 4.287552 GAGTAGGTGAGGGATCCAGTTTA 58.712 47.826 15.23 0.00 0.00 2.01
1904 2000 3.108376 GAGTAGGTGAGGGATCCAGTTT 58.892 50.000 15.23 0.00 0.00 2.66
1905 2001 2.627217 GGAGTAGGTGAGGGATCCAGTT 60.627 54.545 15.23 0.00 0.00 3.16
1906 2002 1.062810 GGAGTAGGTGAGGGATCCAGT 60.063 57.143 15.23 0.00 0.00 4.00
1907 2003 1.219213 AGGAGTAGGTGAGGGATCCAG 59.781 57.143 15.23 0.00 0.00 3.86
1908 2004 1.062886 CAGGAGTAGGTGAGGGATCCA 60.063 57.143 15.23 0.00 0.00 3.41
1909 2005 1.062810 ACAGGAGTAGGTGAGGGATCC 60.063 57.143 1.92 1.92 0.00 3.36
1910 2006 2.463047 ACAGGAGTAGGTGAGGGATC 57.537 55.000 0.00 0.00 0.00 3.36
1911 2007 2.860041 AGTACAGGAGTAGGTGAGGGAT 59.140 50.000 0.00 0.00 0.00 3.85
1912 2008 2.241685 GAGTACAGGAGTAGGTGAGGGA 59.758 54.545 0.00 0.00 0.00 4.20
1913 2009 2.242708 AGAGTACAGGAGTAGGTGAGGG 59.757 54.545 0.00 0.00 0.00 4.30
1914 2010 3.054287 TGAGAGTACAGGAGTAGGTGAGG 60.054 52.174 0.00 0.00 0.00 3.86
1915 2011 4.223556 TGAGAGTACAGGAGTAGGTGAG 57.776 50.000 0.00 0.00 0.00 3.51
1916 2012 4.475381 AGATGAGAGTACAGGAGTAGGTGA 59.525 45.833 0.00 0.00 0.00 4.02
1917 2013 4.787551 AGATGAGAGTACAGGAGTAGGTG 58.212 47.826 0.00 0.00 0.00 4.00
1918 2014 5.442391 GAAGATGAGAGTACAGGAGTAGGT 58.558 45.833 0.00 0.00 0.00 3.08
1919 2015 4.825085 GGAAGATGAGAGTACAGGAGTAGG 59.175 50.000 0.00 0.00 0.00 3.18
1920 2016 5.690865 AGGAAGATGAGAGTACAGGAGTAG 58.309 45.833 0.00 0.00 0.00 2.57
1921 2017 5.718801 AGGAAGATGAGAGTACAGGAGTA 57.281 43.478 0.00 0.00 0.00 2.59
1922 2018 4.601406 AGGAAGATGAGAGTACAGGAGT 57.399 45.455 0.00 0.00 0.00 3.85
1923 2019 4.099266 CCAAGGAAGATGAGAGTACAGGAG 59.901 50.000 0.00 0.00 0.00 3.69
1924 2020 4.026744 CCAAGGAAGATGAGAGTACAGGA 58.973 47.826 0.00 0.00 0.00 3.86
1925 2021 3.431486 GCCAAGGAAGATGAGAGTACAGG 60.431 52.174 0.00 0.00 0.00 4.00
1926 2022 3.196469 TGCCAAGGAAGATGAGAGTACAG 59.804 47.826 0.00 0.00 0.00 2.74
1927 2023 3.173151 TGCCAAGGAAGATGAGAGTACA 58.827 45.455 0.00 0.00 0.00 2.90
1928 2024 3.895232 TGCCAAGGAAGATGAGAGTAC 57.105 47.619 0.00 0.00 0.00 2.73
1929 2025 4.096681 TCTTGCCAAGGAAGATGAGAGTA 58.903 43.478 4.30 0.00 0.00 2.59
1930 2026 2.909006 TCTTGCCAAGGAAGATGAGAGT 59.091 45.455 4.30 0.00 0.00 3.24
1931 2027 3.623906 TCTTGCCAAGGAAGATGAGAG 57.376 47.619 4.30 0.00 0.00 3.20
1932 2028 4.330250 CTTTCTTGCCAAGGAAGATGAGA 58.670 43.478 18.98 0.00 45.33 3.27
1933 2029 3.119566 GCTTTCTTGCCAAGGAAGATGAG 60.120 47.826 26.29 12.07 45.33 2.90
1934 2030 2.821969 GCTTTCTTGCCAAGGAAGATGA 59.178 45.455 26.29 3.32 45.33 2.92
1935 2031 2.824341 AGCTTTCTTGCCAAGGAAGATG 59.176 45.455 26.29 4.43 45.33 2.90
1936 2032 3.166560 AGCTTTCTTGCCAAGGAAGAT 57.833 42.857 26.29 19.01 45.33 2.40
1937 2033 2.664402 AGCTTTCTTGCCAAGGAAGA 57.336 45.000 26.29 8.49 45.33 2.87
1938 2034 4.268359 AGATAGCTTTCTTGCCAAGGAAG 58.732 43.478 19.35 19.35 45.28 3.46
1939 2035 4.307032 AGATAGCTTTCTTGCCAAGGAA 57.693 40.909 4.30 0.56 0.00 3.36
1940 2036 4.265073 GAAGATAGCTTTCTTGCCAAGGA 58.735 43.478 22.08 0.00 36.10 3.36
1941 2037 3.379688 GGAAGATAGCTTTCTTGCCAAGG 59.620 47.826 22.08 0.00 37.91 3.61
1942 2038 4.629251 GGAAGATAGCTTTCTTGCCAAG 57.371 45.455 22.08 0.00 37.91 3.61
1946 2042 4.013050 ACTTGGGAAGATAGCTTTCTTGC 58.987 43.478 23.85 23.85 41.72 4.01
1947 2043 4.637977 GGACTTGGGAAGATAGCTTTCTTG 59.362 45.833 22.08 10.90 36.10 3.02
1948 2044 4.324641 GGGACTTGGGAAGATAGCTTTCTT 60.325 45.833 17.96 17.96 38.65 2.52
1949 2045 3.201045 GGGACTTGGGAAGATAGCTTTCT 59.799 47.826 0.20 0.20 33.61 2.52
1950 2046 3.054361 TGGGACTTGGGAAGATAGCTTTC 60.054 47.826 0.00 0.00 33.61 2.62
1951 2047 2.919602 TGGGACTTGGGAAGATAGCTTT 59.080 45.455 0.00 0.00 33.61 3.51
1952 2048 2.562296 TGGGACTTGGGAAGATAGCTT 58.438 47.619 0.00 0.00 36.96 3.74
1953 2049 2.270434 TGGGACTTGGGAAGATAGCT 57.730 50.000 0.00 0.00 0.00 3.32
1954 2050 2.708325 AGATGGGACTTGGGAAGATAGC 59.292 50.000 0.00 0.00 0.00 2.97
1955 2051 3.969976 TGAGATGGGACTTGGGAAGATAG 59.030 47.826 0.00 0.00 0.00 2.08
1956 2052 4.007581 TGAGATGGGACTTGGGAAGATA 57.992 45.455 0.00 0.00 0.00 1.98
1957 2053 2.850833 TGAGATGGGACTTGGGAAGAT 58.149 47.619 0.00 0.00 0.00 2.40
1958 2054 2.342406 TGAGATGGGACTTGGGAAGA 57.658 50.000 0.00 0.00 0.00 2.87
1959 2055 2.158696 GGATGAGATGGGACTTGGGAAG 60.159 54.545 0.00 0.00 0.00 3.46
1960 2056 1.846439 GGATGAGATGGGACTTGGGAA 59.154 52.381 0.00 0.00 0.00 3.97
1961 2057 1.511613 GGATGAGATGGGACTTGGGA 58.488 55.000 0.00 0.00 0.00 4.37
1962 2058 0.475906 GGGATGAGATGGGACTTGGG 59.524 60.000 0.00 0.00 0.00 4.12
1963 2059 0.475906 GGGGATGAGATGGGACTTGG 59.524 60.000 0.00 0.00 0.00 3.61
1964 2060 1.516110 AGGGGATGAGATGGGACTTG 58.484 55.000 0.00 0.00 0.00 3.16
1965 2061 2.293598 AAGGGGATGAGATGGGACTT 57.706 50.000 0.00 0.00 0.00 3.01
1966 2062 2.131023 GAAAGGGGATGAGATGGGACT 58.869 52.381 0.00 0.00 0.00 3.85
1967 2063 1.143889 GGAAAGGGGATGAGATGGGAC 59.856 57.143 0.00 0.00 0.00 4.46
1968 2064 1.522900 GGAAAGGGGATGAGATGGGA 58.477 55.000 0.00 0.00 0.00 4.37
1969 2065 0.480252 GGGAAAGGGGATGAGATGGG 59.520 60.000 0.00 0.00 0.00 4.00
1970 2066 1.527457 AGGGAAAGGGGATGAGATGG 58.473 55.000 0.00 0.00 0.00 3.51
1971 2067 2.782341 AGAAGGGAAAGGGGATGAGATG 59.218 50.000 0.00 0.00 0.00 2.90
1972 2068 2.782341 CAGAAGGGAAAGGGGATGAGAT 59.218 50.000 0.00 0.00 0.00 2.75
1973 2069 2.200081 CAGAAGGGAAAGGGGATGAGA 58.800 52.381 0.00 0.00 0.00 3.27
1974 2070 2.200081 TCAGAAGGGAAAGGGGATGAG 58.800 52.381 0.00 0.00 0.00 2.90
1975 2071 2.359376 TCAGAAGGGAAAGGGGATGA 57.641 50.000 0.00 0.00 0.00 2.92
1976 2072 2.158549 GGATCAGAAGGGAAAGGGGATG 60.159 54.545 0.00 0.00 0.00 3.51
1977 2073 2.139382 GGATCAGAAGGGAAAGGGGAT 58.861 52.381 0.00 0.00 0.00 3.85
1978 2074 1.596496 GGATCAGAAGGGAAAGGGGA 58.404 55.000 0.00 0.00 0.00 4.81
1979 2075 0.181350 CGGATCAGAAGGGAAAGGGG 59.819 60.000 0.00 0.00 0.00 4.79
1980 2076 1.204146 TCGGATCAGAAGGGAAAGGG 58.796 55.000 0.00 0.00 0.00 3.95
1981 2077 2.703007 AGATCGGATCAGAAGGGAAAGG 59.297 50.000 19.47 0.00 0.00 3.11
1982 2078 3.386078 TCAGATCGGATCAGAAGGGAAAG 59.614 47.826 19.47 0.00 0.00 2.62
1983 2079 3.374764 TCAGATCGGATCAGAAGGGAAA 58.625 45.455 19.47 0.00 0.00 3.13
1984 2080 2.961741 CTCAGATCGGATCAGAAGGGAA 59.038 50.000 19.47 0.00 0.00 3.97
1985 2081 2.175715 TCTCAGATCGGATCAGAAGGGA 59.824 50.000 19.47 8.38 0.00 4.20
1986 2082 2.591923 TCTCAGATCGGATCAGAAGGG 58.408 52.381 19.47 6.33 0.00 3.95
1987 2083 3.825585 TCATCTCAGATCGGATCAGAAGG 59.174 47.826 19.47 10.86 0.00 3.46
1988 2084 5.183522 TCATCATCTCAGATCGGATCAGAAG 59.816 44.000 19.47 11.32 0.00 2.85
1989 2085 5.075493 TCATCATCTCAGATCGGATCAGAA 58.925 41.667 19.47 8.67 0.00 3.02
1990 2086 4.660168 TCATCATCTCAGATCGGATCAGA 58.340 43.478 19.47 15.51 0.00 3.27
1991 2087 4.460034 ACTCATCATCTCAGATCGGATCAG 59.540 45.833 19.47 12.01 0.00 2.90
1992 2088 4.405548 ACTCATCATCTCAGATCGGATCA 58.594 43.478 19.47 0.00 0.00 2.92
1993 2089 5.389859 AACTCATCATCTCAGATCGGATC 57.610 43.478 10.02 10.02 0.00 3.36
1994 2090 4.082841 CGAACTCATCATCTCAGATCGGAT 60.083 45.833 0.00 0.00 31.02 4.18
1995 2091 3.251972 CGAACTCATCATCTCAGATCGGA 59.748 47.826 0.00 0.00 31.02 4.55
1996 2092 3.004210 ACGAACTCATCATCTCAGATCGG 59.996 47.826 0.00 0.00 36.92 4.18
1997 2093 3.973767 CACGAACTCATCATCTCAGATCG 59.026 47.826 0.00 0.00 38.15 3.69
1998 2094 4.975502 GTCACGAACTCATCATCTCAGATC 59.024 45.833 0.00 0.00 0.00 2.75
1999 2095 4.400567 TGTCACGAACTCATCATCTCAGAT 59.599 41.667 0.00 0.00 0.00 2.90
2000 2096 3.758554 TGTCACGAACTCATCATCTCAGA 59.241 43.478 0.00 0.00 0.00 3.27
2001 2097 4.102035 TGTCACGAACTCATCATCTCAG 57.898 45.455 0.00 0.00 0.00 3.35
2002 2098 3.507622 ACTGTCACGAACTCATCATCTCA 59.492 43.478 0.00 0.00 0.00 3.27
2003 2099 4.103365 ACTGTCACGAACTCATCATCTC 57.897 45.455 0.00 0.00 0.00 2.75
2004 2100 5.126222 ACATACTGTCACGAACTCATCATCT 59.874 40.000 0.00 0.00 0.00 2.90
2005 2101 5.344066 ACATACTGTCACGAACTCATCATC 58.656 41.667 0.00 0.00 0.00 2.92
2006 2102 5.330455 ACATACTGTCACGAACTCATCAT 57.670 39.130 0.00 0.00 0.00 2.45
2007 2103 4.783764 ACATACTGTCACGAACTCATCA 57.216 40.909 0.00 0.00 0.00 3.07
2008 2104 6.467723 AAAACATACTGTCACGAACTCATC 57.532 37.500 0.00 0.00 0.00 2.92
2009 2105 7.328737 GTCTAAAACATACTGTCACGAACTCAT 59.671 37.037 0.00 0.00 0.00 2.90
2010 2106 6.639686 GTCTAAAACATACTGTCACGAACTCA 59.360 38.462 0.00 0.00 0.00 3.41
2011 2107 6.862090 AGTCTAAAACATACTGTCACGAACTC 59.138 38.462 0.00 0.00 0.00 3.01
2012 2108 6.641314 CAGTCTAAAACATACTGTCACGAACT 59.359 38.462 0.00 0.00 36.66 3.01
2013 2109 6.808264 CAGTCTAAAACATACTGTCACGAAC 58.192 40.000 0.00 0.00 36.66 3.95
2026 2122 9.578576 TCCTAGAAACTAGTACAGTCTAAAACA 57.421 33.333 0.00 0.00 36.04 2.83
2028 2124 9.804977 ACTCCTAGAAACTAGTACAGTCTAAAA 57.195 33.333 0.00 0.00 36.04 1.52
2030 2126 9.883142 GTACTCCTAGAAACTAGTACAGTCTAA 57.117 37.037 0.00 0.00 42.41 2.10
2031 2127 8.482128 GGTACTCCTAGAAACTAGTACAGTCTA 58.518 40.741 12.13 0.97 43.88 2.59
2032 2128 7.182568 AGGTACTCCTAGAAACTAGTACAGTCT 59.817 40.741 12.13 0.00 43.88 3.24
2033 2129 7.280652 CAGGTACTCCTAGAAACTAGTACAGTC 59.719 44.444 12.13 0.00 43.88 3.51
2034 2130 7.111466 CAGGTACTCCTAGAAACTAGTACAGT 58.889 42.308 12.13 0.00 43.88 3.55
2035 2131 7.111466 ACAGGTACTCCTAGAAACTAGTACAG 58.889 42.308 12.13 7.41 43.88 2.74
2036 2132 7.025520 ACAGGTACTCCTAGAAACTAGTACA 57.974 40.000 12.13 0.00 43.88 2.90
2037 2133 7.108847 TGACAGGTACTCCTAGAAACTAGTAC 58.891 42.308 0.00 0.00 43.07 2.73
2038 2134 7.262990 TGACAGGTACTCCTAGAAACTAGTA 57.737 40.000 0.00 0.00 43.07 1.82
2048 2144 3.056107 GCACATGTTGACAGGTACTCCTA 60.056 47.826 0.00 0.00 43.07 2.94
2049 2145 2.289694 GCACATGTTGACAGGTACTCCT 60.290 50.000 0.00 0.00 46.37 3.69
2050 2146 2.076863 GCACATGTTGACAGGTACTCC 58.923 52.381 0.00 0.00 39.00 3.85
2051 2147 2.766313 TGCACATGTTGACAGGTACTC 58.234 47.619 0.00 0.00 39.00 2.59
2052 2148 2.928801 TGCACATGTTGACAGGTACT 57.071 45.000 0.00 0.00 39.00 2.73
2053 2149 5.586243 AGATATTGCACATGTTGACAGGTAC 59.414 40.000 0.00 0.00 39.00 3.34
2149 2249 5.796502 TTCAGGGTTCATTAGAGGGATTT 57.203 39.130 0.00 0.00 0.00 2.17
2150 2250 5.796502 TTTCAGGGTTCATTAGAGGGATT 57.203 39.130 0.00 0.00 0.00 3.01
2151 2251 7.295672 TCATATTTCAGGGTTCATTAGAGGGAT 59.704 37.037 0.00 0.00 0.00 3.85
2181 2299 7.070821 GGGTTAGAAACTCCATGTCCTCTTATA 59.929 40.741 0.00 0.00 0.00 0.98
2187 2307 3.264450 CAGGGTTAGAAACTCCATGTCCT 59.736 47.826 0.00 0.00 29.93 3.85
2205 2325 1.002990 TGTGCATGTGAGCTCAGGG 60.003 57.895 18.89 10.71 33.56 4.45
2215 2335 1.234821 CAGTTTACCCGTGTGCATGT 58.765 50.000 0.00 0.00 0.00 3.21
2223 2343 6.696441 TTTTGTATTTCACAGTTTACCCGT 57.304 33.333 0.00 0.00 38.72 5.28
2320 2440 5.407084 ACGACAAATGACATTACATCACGAA 59.593 36.000 0.00 0.00 0.00 3.85
2335 2455 0.950836 TGTTCAGGCCACGACAAATG 59.049 50.000 5.01 0.00 0.00 2.32
2338 2458 1.464734 TTTTGTTCAGGCCACGACAA 58.535 45.000 5.01 9.67 0.00 3.18
2339 2459 1.464734 TTTTTGTTCAGGCCACGACA 58.535 45.000 5.01 2.83 0.00 4.35
2361 2481 8.949177 ACTTGTCTTTTTGAAGCATTGATTTTT 58.051 25.926 0.00 0.00 0.00 1.94
2362 2482 8.496707 ACTTGTCTTTTTGAAGCATTGATTTT 57.503 26.923 0.00 0.00 0.00 1.82
2363 2483 9.768662 ATACTTGTCTTTTTGAAGCATTGATTT 57.231 25.926 0.00 0.00 0.00 2.17
2364 2484 9.768662 AATACTTGTCTTTTTGAAGCATTGATT 57.231 25.926 0.00 0.00 0.00 2.57
2365 2485 9.199982 CAATACTTGTCTTTTTGAAGCATTGAT 57.800 29.630 0.00 0.00 34.44 2.57
2366 2486 7.652909 CCAATACTTGTCTTTTTGAAGCATTGA 59.347 33.333 0.00 0.00 34.44 2.57
2367 2487 7.652909 TCCAATACTTGTCTTTTTGAAGCATTG 59.347 33.333 0.00 0.00 33.19 2.82
2368 2488 7.725251 TCCAATACTTGTCTTTTTGAAGCATT 58.275 30.769 0.00 0.00 0.00 3.56
2369 2489 7.288810 TCCAATACTTGTCTTTTTGAAGCAT 57.711 32.000 0.00 0.00 0.00 3.79
2370 2490 6.707440 TCCAATACTTGTCTTTTTGAAGCA 57.293 33.333 0.00 0.00 0.00 3.91
2371 2491 6.144563 GCTTCCAATACTTGTCTTTTTGAAGC 59.855 38.462 0.00 0.00 33.39 3.86
2372 2492 6.642540 GGCTTCCAATACTTGTCTTTTTGAAG 59.357 38.462 0.00 0.00 0.00 3.02
2373 2493 6.323739 AGGCTTCCAATACTTGTCTTTTTGAA 59.676 34.615 0.00 0.00 0.00 2.69
2374 2494 5.833131 AGGCTTCCAATACTTGTCTTTTTGA 59.167 36.000 0.00 0.00 0.00 2.69
2375 2495 6.089249 AGGCTTCCAATACTTGTCTTTTTG 57.911 37.500 0.00 0.00 0.00 2.44
2376 2496 6.731292 AAGGCTTCCAATACTTGTCTTTTT 57.269 33.333 0.00 0.00 0.00 1.94
2377 2497 6.731292 AAAGGCTTCCAATACTTGTCTTTT 57.269 33.333 0.00 0.00 0.00 2.27
2378 2498 6.462909 CCAAAAGGCTTCCAATACTTGTCTTT 60.463 38.462 0.00 0.00 0.00 2.52
2379 2499 5.011023 CCAAAAGGCTTCCAATACTTGTCTT 59.989 40.000 0.00 0.00 0.00 3.01
2380 2500 4.524328 CCAAAAGGCTTCCAATACTTGTCT 59.476 41.667 0.00 0.00 0.00 3.41
2381 2501 4.522789 TCCAAAAGGCTTCCAATACTTGTC 59.477 41.667 0.00 0.00 0.00 3.18
2382 2502 4.479158 TCCAAAAGGCTTCCAATACTTGT 58.521 39.130 0.00 0.00 0.00 3.16
2383 2503 4.619160 GCTCCAAAAGGCTTCCAATACTTG 60.619 45.833 0.00 0.00 0.00 3.16
2384 2504 3.511540 GCTCCAAAAGGCTTCCAATACTT 59.488 43.478 0.00 0.00 0.00 2.24
2385 2505 3.092301 GCTCCAAAAGGCTTCCAATACT 58.908 45.455 0.00 0.00 0.00 2.12
2386 2506 2.825532 TGCTCCAAAAGGCTTCCAATAC 59.174 45.455 0.00 0.00 0.00 1.89
2387 2507 3.168035 TGCTCCAAAAGGCTTCCAATA 57.832 42.857 0.00 0.00 0.00 1.90
2388 2508 2.014010 TGCTCCAAAAGGCTTCCAAT 57.986 45.000 0.00 0.00 0.00 3.16
2389 2509 1.895131 GATGCTCCAAAAGGCTTCCAA 59.105 47.619 0.00 0.00 0.00 3.53
2390 2510 1.076024 AGATGCTCCAAAAGGCTTCCA 59.924 47.619 0.00 0.00 34.52 3.53
2391 2511 1.844687 AGATGCTCCAAAAGGCTTCC 58.155 50.000 0.00 0.00 34.52 3.46
2420 2540 1.101049 CATAACCATGGTGGACGCCC 61.101 60.000 20.60 0.00 40.96 6.13
2422 2542 1.459450 AACATAACCATGGTGGACGC 58.541 50.000 20.60 0.00 40.96 5.19
2424 2544 2.825532 AGCAAACATAACCATGGTGGAC 59.174 45.455 20.60 2.54 40.96 4.02
2425 2545 2.824936 CAGCAAACATAACCATGGTGGA 59.175 45.455 20.60 10.46 40.96 4.02
2530 2658 4.778143 GTGGGGGTAGCGTGGCTG 62.778 72.222 0.00 0.00 40.10 4.85
2558 2694 3.885901 CTCACATAGAAGATGTCCGAGGA 59.114 47.826 0.00 0.00 0.00 3.71
2559 2695 3.005261 CCTCACATAGAAGATGTCCGAGG 59.995 52.174 8.74 8.74 36.52 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.