Multiple sequence alignment - TraesCS2D01G514800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G514800 chr2D 100.000 2249 0 0 1 2249 606624609 606626857 0.000000e+00 4154.0
1 TraesCS2D01G514800 chr2D 94.208 259 15 0 497 755 22174863 22175121 1.620000e-106 396.0
2 TraesCS2D01G514800 chr2D 93.511 262 17 0 492 753 633395927 633396188 7.530000e-105 390.0
3 TraesCS2D01G514800 chr2D 87.719 285 34 1 490 773 580967708 580967992 4.630000e-87 331.0
4 TraesCS2D01G514800 chr2D 88.259 247 23 4 1000 1240 606637250 606637496 7.860000e-75 291.0
5 TraesCS2D01G514800 chr2D 86.034 179 25 0 1000 1178 606514353 606514531 2.280000e-45 193.0
6 TraesCS2D01G514800 chr2D 86.207 174 24 0 1013 1186 606132790 606132963 2.950000e-44 189.0
7 TraesCS2D01G514800 chr2D 82.143 84 11 3 20 102 374123800 374123720 4.010000e-08 69.4
8 TraesCS2D01G514800 chr2D 86.667 60 3 5 785 842 606132610 606132666 6.710000e-06 62.1
9 TraesCS2D01G514800 chr2B 91.209 910 44 15 796 1689 737870742 737871631 0.000000e+00 1205.0
10 TraesCS2D01G514800 chr2B 94.860 214 10 1 1838 2050 737873402 737873615 1.290000e-87 333.0
11 TraesCS2D01G514800 chr2B 87.072 263 28 4 1000 1256 738175991 738176253 2.180000e-75 292.0
12 TraesCS2D01G514800 chr2B 86.617 269 17 12 238 496 737870467 737870726 1.700000e-71 279.0
13 TraesCS2D01G514800 chr2B 97.351 151 4 0 1695 1845 737871988 737872138 7.970000e-65 257.0
14 TraesCS2D01G514800 chr2B 88.757 169 17 2 2063 2229 738011097 738011265 2.930000e-49 206.0
15 TraesCS2D01G514800 chr2B 85.632 174 25 0 1000 1173 737635275 737635448 1.370000e-42 183.0
16 TraesCS2D01G514800 chr2B 83.598 189 28 1 1001 1186 737050234 737050422 8.260000e-40 174.0
17 TraesCS2D01G514800 chr2A 94.452 739 27 7 844 1569 738143800 738144537 0.000000e+00 1125.0
18 TraesCS2D01G514800 chr2A 91.577 558 40 6 1697 2249 738175240 738175795 0.000000e+00 763.0
19 TraesCS2D01G514800 chr2A 90.342 497 34 6 1 495 738142788 738143272 6.770000e-180 640.0
20 TraesCS2D01G514800 chr2A 91.473 258 21 1 497 753 758995862 758996119 9.880000e-94 353.0
21 TraesCS2D01G514800 chr2A 90.000 270 26 1 490 758 763390760 763391029 4.600000e-92 348.0
22 TraesCS2D01G514800 chr2A 87.218 266 25 6 1000 1256 738202604 738202869 6.070000e-76 294.0
23 TraesCS2D01G514800 chr2A 96.774 31 1 0 785 815 737829529 737829559 4.000000e-03 52.8
24 TraesCS2D01G514800 chr6D 95.000 260 13 0 496 755 53715367 53715626 2.080000e-110 409.0
25 TraesCS2D01G514800 chr6D 94.186 258 14 1 497 754 22714788 22715044 2.090000e-105 392.0
26 TraesCS2D01G514800 chr3D 93.130 262 18 0 497 758 514289275 514289014 3.500000e-103 385.0
27 TraesCS2D01G514800 chr3D 90.458 262 24 1 495 755 17649910 17649649 5.950000e-91 344.0
28 TraesCS2D01G514800 chr3D 82.353 85 15 0 35 119 115035246 115035330 8.610000e-10 75.0
29 TraesCS2D01G514800 chr6A 77.907 172 32 6 20 188 412366414 412366246 3.950000e-18 102.0
30 TraesCS2D01G514800 chr5B 76.812 138 21 8 68 200 4827830 4827961 1.440000e-07 67.6
31 TraesCS2D01G514800 chr1A 97.436 39 1 0 68 106 511489907 511489945 1.440000e-07 67.6
32 TraesCS2D01G514800 chr3B 100.000 31 0 0 67 97 765004149 765004119 8.680000e-05 58.4
33 TraesCS2D01G514800 chr1B 77.670 103 16 6 2 97 685279306 685279408 3.120000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G514800 chr2D 606624609 606626857 2248 False 4154.0 4154 100.00000 1 2249 1 chr2D.!!$F4 2248
1 TraesCS2D01G514800 chr2B 737870467 737873615 3148 False 518.5 1205 92.50925 238 2050 4 chr2B.!!$F5 1812
2 TraesCS2D01G514800 chr2A 738142788 738144537 1749 False 882.5 1125 92.39700 1 1569 2 chr2A.!!$F6 1568
3 TraesCS2D01G514800 chr2A 738175240 738175795 555 False 763.0 763 91.57700 1697 2249 1 chr2A.!!$F2 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 837 0.107081 TGGTCTTAACACACCACCGG 59.893 55.0 0.0 0.0 37.78 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 4081 1.212195 CCCCAGTTAGTAGCTTTCCCC 59.788 57.143 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.666888 GGCACGAAGATGGCAAGTTTG 60.667 52.381 0.00 0.00 44.34 2.93
32 33 2.158475 AGATGGCAAGTTTGGAAGGACA 60.158 45.455 0.00 0.00 0.00 4.02
36 37 2.167487 GGCAAGTTTGGAAGGACAACAA 59.833 45.455 0.00 0.00 0.00 2.83
40 41 5.006649 GCAAGTTTGGAAGGACAACAATTTC 59.993 40.000 0.00 0.00 0.00 2.17
41 42 5.276461 AGTTTGGAAGGACAACAATTTCC 57.724 39.130 0.00 0.00 39.59 3.13
45 46 2.562738 GGAAGGACAACAATTTCCTGGG 59.437 50.000 0.00 0.00 41.72 4.45
46 47 3.496331 GAAGGACAACAATTTCCTGGGA 58.504 45.455 0.00 0.00 41.72 4.37
88 91 0.179163 GCCATGCTCGCCAACTAAAC 60.179 55.000 0.00 0.00 0.00 2.01
97 100 3.734463 TCGCCAACTAAACTTGTCATCA 58.266 40.909 0.00 0.00 0.00 3.07
106 109 3.837213 AACTTGTCATCATCGGCAAAG 57.163 42.857 0.00 0.00 0.00 2.77
111 114 4.944962 TGTCATCATCGGCAAAGTTAAG 57.055 40.909 0.00 0.00 0.00 1.85
114 117 5.088739 GTCATCATCGGCAAAGTTAAGTTG 58.911 41.667 0.00 0.00 0.00 3.16
119 122 4.481930 TCGGCAAAGTTAAGTTGTCATG 57.518 40.909 0.00 0.00 29.73 3.07
123 126 6.597672 TCGGCAAAGTTAAGTTGTCATGATAT 59.402 34.615 0.00 0.00 29.73 1.63
157 160 7.709269 TTATCATGTCTAAATAACTGCCGTC 57.291 36.000 0.00 0.00 0.00 4.79
180 183 6.012113 TCGGATAGATATTCCGGTCCTAAAA 58.988 40.000 13.10 0.00 46.03 1.52
181 184 6.666546 TCGGATAGATATTCCGGTCCTAAAAT 59.333 38.462 13.10 0.00 46.03 1.82
182 185 7.835682 TCGGATAGATATTCCGGTCCTAAAATA 59.164 37.037 13.10 0.00 46.03 1.40
183 186 8.639761 CGGATAGATATTCCGGTCCTAAAATAT 58.360 37.037 0.00 2.16 42.70 1.28
187 190 8.336801 AGATATTCCGGTCCTAAAATATTTGC 57.663 34.615 0.00 0.00 0.00 3.68
188 191 8.164070 AGATATTCCGGTCCTAAAATATTTGCT 58.836 33.333 0.00 0.00 0.00 3.91
189 192 5.828299 TTCCGGTCCTAAAATATTTGCTG 57.172 39.130 0.00 0.00 0.00 4.41
190 193 4.850680 TCCGGTCCTAAAATATTTGCTGT 58.149 39.130 0.00 0.00 0.00 4.40
206 209 6.843069 TTTGCTGTTAGAAAATTTGAAGGC 57.157 33.333 0.00 0.00 0.00 4.35
212 215 7.308589 GCTGTTAGAAAATTTGAAGGCAGAGTA 60.309 37.037 13.15 0.00 0.00 2.59
310 315 1.865340 GGACCTCGTTGTCAACAGTTC 59.135 52.381 15.79 9.50 36.97 3.01
382 390 6.127793 AGTACCTAGTACAGTACAATCAGGG 58.872 44.000 13.37 7.54 41.03 4.45
496 509 4.525912 TGGTAAGTTCTCGGTCTTAACC 57.474 45.455 0.00 0.00 42.66 2.85
497 510 3.896888 TGGTAAGTTCTCGGTCTTAACCA 59.103 43.478 0.00 0.00 46.86 3.67
498 511 4.529377 TGGTAAGTTCTCGGTCTTAACCAT 59.471 41.667 0.00 0.00 46.86 3.55
499 512 5.716228 TGGTAAGTTCTCGGTCTTAACCATA 59.284 40.000 0.00 0.00 46.86 2.74
500 513 6.127535 TGGTAAGTTCTCGGTCTTAACCATAG 60.128 42.308 0.00 0.00 46.86 2.23
504 517 7.893124 AGTTCTCGGTCTTAACCATAGATTA 57.107 36.000 0.00 0.00 46.86 1.75
505 518 8.302515 AGTTCTCGGTCTTAACCATAGATTAA 57.697 34.615 0.00 0.00 46.86 1.40
506 519 8.755977 AGTTCTCGGTCTTAACCATAGATTAAA 58.244 33.333 0.00 0.00 46.86 1.52
507 520 9.374838 GTTCTCGGTCTTAACCATAGATTAAAA 57.625 33.333 0.00 0.00 46.86 1.52
511 524 9.485206 TCGGTCTTAACCATAGATTAAAATAGC 57.515 33.333 0.00 0.00 46.86 2.97
512 525 8.718734 CGGTCTTAACCATAGATTAAAATAGCC 58.281 37.037 0.00 0.00 46.86 3.93
513 526 9.011095 GGTCTTAACCATAGATTAAAATAGCCC 57.989 37.037 0.00 0.00 45.68 5.19
514 527 9.569122 GTCTTAACCATAGATTAAAATAGCCCA 57.431 33.333 0.00 0.00 0.00 5.36
515 528 9.569122 TCTTAACCATAGATTAAAATAGCCCAC 57.431 33.333 0.00 0.00 0.00 4.61
516 529 6.877611 AACCATAGATTAAAATAGCCCACG 57.122 37.500 0.00 0.00 0.00 4.94
517 530 6.182507 ACCATAGATTAAAATAGCCCACGA 57.817 37.500 0.00 0.00 0.00 4.35
518 531 6.597562 ACCATAGATTAAAATAGCCCACGAA 58.402 36.000 0.00 0.00 0.00 3.85
519 532 7.057894 ACCATAGATTAAAATAGCCCACGAAA 58.942 34.615 0.00 0.00 0.00 3.46
521 534 9.226606 CCATAGATTAAAATAGCCCACGAAATA 57.773 33.333 0.00 0.00 0.00 1.40
523 536 7.203255 AGATTAAAATAGCCCACGAAATAGC 57.797 36.000 0.00 0.00 0.00 2.97
524 537 5.761165 TTAAAATAGCCCACGAAATAGCC 57.239 39.130 0.00 0.00 0.00 3.93
526 539 0.602905 ATAGCCCACGAAATAGCCGC 60.603 55.000 0.00 0.00 0.00 6.53
527 540 2.964438 TAGCCCACGAAATAGCCGCG 62.964 60.000 0.00 0.00 0.00 6.46
528 541 2.202824 CCCACGAAATAGCCGCGA 60.203 61.111 8.23 0.00 0.00 5.87
530 543 0.319211 CCCACGAAATAGCCGCGATA 60.319 55.000 8.23 0.00 0.00 2.92
531 544 1.060713 CCACGAAATAGCCGCGATAG 58.939 55.000 8.23 0.00 0.00 2.08
543 556 3.468007 CGATAGCTGCGCCATAGC 58.532 61.111 10.03 10.03 41.43 2.97
550 563 4.862447 TGCGCCATAGCTGCCCAG 62.862 66.667 4.18 0.00 37.61 4.45
552 565 3.865383 CGCCATAGCTGCCCAGGA 61.865 66.667 0.00 0.00 36.60 3.86
553 566 2.112718 GCCATAGCTGCCCAGGAG 59.887 66.667 0.00 0.00 35.50 3.69
554 567 2.112718 CCATAGCTGCCCAGGAGC 59.887 66.667 0.00 0.00 36.65 4.70
555 568 2.112718 CATAGCTGCCCAGGAGCC 59.887 66.667 4.35 0.00 37.12 4.70
556 569 2.040043 ATAGCTGCCCAGGAGCCT 60.040 61.111 4.35 0.00 37.12 4.58
557 570 2.146061 ATAGCTGCCCAGGAGCCTC 61.146 63.158 4.35 0.00 37.12 4.70
565 578 3.838271 CAGGAGCCTCGCCGCTAA 61.838 66.667 0.00 0.00 39.87 3.09
566 579 3.532155 AGGAGCCTCGCCGCTAAG 61.532 66.667 0.00 0.00 39.87 2.18
568 581 2.731374 GAGCCTCGCCGCTAAGAT 59.269 61.111 0.00 0.00 39.87 2.40
569 582 1.524863 GGAGCCTCGCCGCTAAGATA 61.525 60.000 0.00 0.00 39.87 1.98
570 583 0.528470 GAGCCTCGCCGCTAAGATAT 59.472 55.000 0.00 0.00 39.87 1.63
571 584 0.244994 AGCCTCGCCGCTAAGATATG 59.755 55.000 0.00 0.00 37.32 1.78
572 585 0.737715 GCCTCGCCGCTAAGATATGG 60.738 60.000 0.00 0.00 0.00 2.74
573 586 0.737715 CCTCGCCGCTAAGATATGGC 60.738 60.000 0.00 0.00 44.09 4.40
576 589 1.630244 CGCCGCTAAGATATGGCTGC 61.630 60.000 0.21 0.00 45.36 5.25
578 591 1.436600 CCGCTAAGATATGGCTGCTG 58.563 55.000 0.00 0.00 32.41 4.41
579 592 0.795085 CGCTAAGATATGGCTGCTGC 59.205 55.000 7.10 7.10 32.41 5.25
589 602 4.543084 GCTGCTGCCGCGAAATCC 62.543 66.667 8.23 0.00 39.65 3.01
590 603 2.821366 CTGCTGCCGCGAAATCCT 60.821 61.111 8.23 0.00 39.65 3.24
591 604 2.817423 CTGCTGCCGCGAAATCCTC 61.817 63.158 8.23 0.00 39.65 3.71
593 606 1.227263 GCTGCCGCGAAATCCTCTA 60.227 57.895 8.23 0.00 0.00 2.43
595 608 0.179111 CTGCCGCGAAATCCTCTACA 60.179 55.000 8.23 0.00 0.00 2.74
596 609 0.464036 TGCCGCGAAATCCTCTACAT 59.536 50.000 8.23 0.00 0.00 2.29
597 610 1.684450 TGCCGCGAAATCCTCTACATA 59.316 47.619 8.23 0.00 0.00 2.29
602 615 4.416620 CGCGAAATCCTCTACATATCCTC 58.583 47.826 0.00 0.00 0.00 3.71
604 617 5.354513 CGCGAAATCCTCTACATATCCTCTA 59.645 44.000 0.00 0.00 0.00 2.43
605 618 6.127980 CGCGAAATCCTCTACATATCCTCTAA 60.128 42.308 0.00 0.00 0.00 2.10
607 620 8.254508 GCGAAATCCTCTACATATCCTCTAAAT 58.745 37.037 0.00 0.00 0.00 1.40
624 691 9.461312 TCCTCTAAATAGCTTAAAAATCAGCAA 57.539 29.630 0.00 0.00 38.61 3.91
629 696 7.905604 AATAGCTTAAAAATCAGCAAAACCC 57.094 32.000 0.00 0.00 38.61 4.11
632 699 4.690748 GCTTAAAAATCAGCAAAACCCTCC 59.309 41.667 0.00 0.00 35.95 4.30
635 702 4.769345 AAAATCAGCAAAACCCTCCAAA 57.231 36.364 0.00 0.00 0.00 3.28
636 703 4.769345 AAATCAGCAAAACCCTCCAAAA 57.231 36.364 0.00 0.00 0.00 2.44
637 704 4.980339 AATCAGCAAAACCCTCCAAAAT 57.020 36.364 0.00 0.00 0.00 1.82
645 712 5.623141 GCAAAACCCTCCAAAATCATCTCTC 60.623 44.000 0.00 0.00 0.00 3.20
646 713 3.941704 ACCCTCCAAAATCATCTCTCC 57.058 47.619 0.00 0.00 0.00 3.71
648 715 2.511218 CCCTCCAAAATCATCTCTCCCA 59.489 50.000 0.00 0.00 0.00 4.37
649 716 3.139770 CCCTCCAAAATCATCTCTCCCAT 59.860 47.826 0.00 0.00 0.00 4.00
650 717 4.396522 CCTCCAAAATCATCTCTCCCATC 58.603 47.826 0.00 0.00 0.00 3.51
652 719 5.045012 TCCAAAATCATCTCTCCCATCAG 57.955 43.478 0.00 0.00 0.00 2.90
660 727 8.605325 AATCATCTCTCCCATCAGAAAAATTT 57.395 30.769 0.00 0.00 0.00 1.82
661 728 7.636150 TCATCTCTCCCATCAGAAAAATTTC 57.364 36.000 0.00 0.00 37.45 2.17
662 729 6.604795 TCATCTCTCCCATCAGAAAAATTTCC 59.395 38.462 2.37 0.00 37.92 3.13
663 730 4.943705 TCTCTCCCATCAGAAAAATTTCCG 59.056 41.667 2.37 0.00 37.92 4.30
664 731 3.443681 TCTCCCATCAGAAAAATTTCCGC 59.556 43.478 2.37 0.00 37.92 5.54
665 732 3.430453 TCCCATCAGAAAAATTTCCGCT 58.570 40.909 2.37 0.00 37.92 5.52
666 733 4.594970 TCCCATCAGAAAAATTTCCGCTA 58.405 39.130 2.37 0.00 37.92 4.26
667 734 5.200483 TCCCATCAGAAAAATTTCCGCTAT 58.800 37.500 2.37 0.00 37.92 2.97
669 736 6.154363 TCCCATCAGAAAAATTTCCGCTATTT 59.846 34.615 2.37 0.00 37.92 1.40
670 737 6.256321 CCCATCAGAAAAATTTCCGCTATTTG 59.744 38.462 2.37 0.00 37.92 2.32
672 739 5.167845 TCAGAAAAATTTCCGCTATTTGCC 58.832 37.500 2.37 0.00 37.92 4.52
673 740 4.031652 CAGAAAAATTTCCGCTATTTGCCG 59.968 41.667 2.37 0.00 37.92 5.69
681 748 3.748021 GCTATTTGCCGCGATTACC 57.252 52.632 8.23 0.00 35.15 2.85
682 749 0.237498 GCTATTTGCCGCGATTACCC 59.763 55.000 8.23 0.00 35.15 3.69
701 768 3.576356 CTATGGCGGCCGCAACAG 61.576 66.667 46.88 35.36 44.11 3.16
713 780 4.298009 CAACAGCTGCTGGGAGAG 57.702 61.111 31.00 13.30 35.51 3.20
714 781 1.376942 CAACAGCTGCTGGGAGAGG 60.377 63.158 31.00 11.38 35.51 3.69
715 782 3.265272 AACAGCTGCTGGGAGAGGC 62.265 63.158 31.00 0.00 35.51 4.70
716 783 3.400928 CAGCTGCTGGGAGAGGCT 61.401 66.667 21.71 0.00 0.00 4.58
717 784 2.062777 CAGCTGCTGGGAGAGGCTA 61.063 63.158 21.71 0.00 0.00 3.93
718 785 2.063378 AGCTGCTGGGAGAGGCTAC 61.063 63.158 0.00 0.00 0.00 3.58
719 786 3.100503 GCTGCTGGGAGAGGCTACC 62.101 68.421 0.00 0.00 34.37 3.18
720 787 1.687146 CTGCTGGGAGAGGCTACCA 60.687 63.158 11.41 8.35 43.15 3.25
721 788 1.965754 CTGCTGGGAGAGGCTACCAC 61.966 65.000 11.41 5.65 39.99 4.16
722 789 3.082579 GCTGGGAGAGGCTACCACG 62.083 68.421 11.41 5.45 39.99 4.94
724 791 0.970937 CTGGGAGAGGCTACCACGAA 60.971 60.000 11.41 0.00 39.99 3.85
726 793 0.831307 GGGAGAGGCTACCACGAAAT 59.169 55.000 11.41 0.00 33.84 2.17
727 794 1.202545 GGGAGAGGCTACCACGAAATC 60.203 57.143 11.41 0.00 33.84 2.17
740 807 1.705256 CGAAATCGTTTCTCCGGTGA 58.295 50.000 0.00 0.06 37.52 4.02
741 808 2.268298 CGAAATCGTTTCTCCGGTGAT 58.732 47.619 7.11 0.00 37.52 3.06
742 809 2.281762 CGAAATCGTTTCTCCGGTGATC 59.718 50.000 7.11 3.39 37.52 2.92
743 810 3.522553 GAAATCGTTTCTCCGGTGATCT 58.477 45.455 7.11 0.00 36.73 2.75
744 811 3.611766 AATCGTTTCTCCGGTGATCTT 57.388 42.857 7.11 0.00 0.00 2.40
745 812 4.730949 AATCGTTTCTCCGGTGATCTTA 57.269 40.909 7.11 0.00 0.00 2.10
746 813 4.730949 ATCGTTTCTCCGGTGATCTTAA 57.269 40.909 7.11 0.00 0.00 1.85
747 814 4.730949 TCGTTTCTCCGGTGATCTTAAT 57.269 40.909 7.11 0.00 0.00 1.40
748 815 4.679662 TCGTTTCTCCGGTGATCTTAATC 58.320 43.478 7.11 0.00 0.00 1.75
749 816 4.401519 TCGTTTCTCCGGTGATCTTAATCT 59.598 41.667 7.11 0.00 32.75 2.40
750 817 5.591472 TCGTTTCTCCGGTGATCTTAATCTA 59.409 40.000 7.11 0.00 32.75 1.98
751 818 6.264744 TCGTTTCTCCGGTGATCTTAATCTAT 59.735 38.462 7.11 0.00 32.75 1.98
752 819 6.363626 CGTTTCTCCGGTGATCTTAATCTATG 59.636 42.308 7.11 0.00 32.75 2.23
770 837 0.107081 TGGTCTTAACACACCACCGG 59.893 55.000 0.00 0.00 37.78 5.28
771 838 1.232621 GGTCTTAACACACCACCGGC 61.233 60.000 0.00 0.00 32.33 6.13
772 839 1.301087 TCTTAACACACCACCGGCG 60.301 57.895 0.00 0.00 0.00 6.46
773 840 1.301087 CTTAACACACCACCGGCGA 60.301 57.895 9.30 0.00 0.00 5.54
774 841 1.289109 CTTAACACACCACCGGCGAG 61.289 60.000 9.30 0.06 0.00 5.03
775 842 3.869473 TAACACACCACCGGCGAGC 62.869 63.158 9.30 0.00 0.00 5.03
781 848 2.355986 ACCACCGGCGAGCAATAGA 61.356 57.895 9.30 0.00 0.00 1.98
783 850 1.154205 CCACCGGCGAGCAATAGAAG 61.154 60.000 9.30 0.00 0.00 2.85
784 851 0.460284 CACCGGCGAGCAATAGAAGT 60.460 55.000 9.30 0.00 0.00 3.01
793 860 1.654105 AGCAATAGAAGTTCGTTCGCG 59.346 47.619 0.00 0.00 40.49 5.87
800 867 4.754818 GTTCGTTCGCGCTCGCAC 62.755 66.667 14.80 12.23 42.06 5.34
854 1069 1.938861 CGAAACCAAGACCACACCG 59.061 57.895 0.00 0.00 0.00 4.94
876 1091 4.400961 GCCTGCGAGCCTTCACCT 62.401 66.667 0.00 0.00 0.00 4.00
890 1113 3.055385 CCTTCACCTTTCCGAATCAGGTA 60.055 47.826 4.49 0.00 39.01 3.08
1008 1245 4.096382 GTGTGGATTAGTTTGATGGCGATT 59.904 41.667 0.00 0.00 0.00 3.34
1583 1826 4.406003 TCAGCTCCTTTACCTTCATCTACC 59.594 45.833 0.00 0.00 0.00 3.18
1602 1845 6.002704 TCTACCTATCGGTTCATCCTACTTC 58.997 44.000 0.00 0.00 42.13 3.01
1627 1870 9.208022 TCAGTGATTAAATACTGTTCAGTCAAG 57.792 33.333 17.09 0.00 43.59 3.02
1689 1932 1.064906 ACCACCTTCATGCATGAGAGG 60.065 52.381 33.40 33.40 39.18 3.69
1692 1935 1.647629 CTTCATGCATGAGAGGCGC 59.352 57.895 27.25 0.00 38.19 6.53
1693 1936 1.783031 CTTCATGCATGAGAGGCGCC 61.783 60.000 27.25 21.89 38.19 6.53
1761 2355 2.476241 TGCGTGCATGCTCTTAATATCG 59.524 45.455 29.83 6.30 35.36 2.92
1887 3753 8.349983 TGGATAAGAAAGACACAACTTTTTAGC 58.650 33.333 0.00 0.00 39.71 3.09
2117 3983 2.026262 ACCCCGCTAGATTCATGTTTGT 60.026 45.455 0.00 0.00 0.00 2.83
2122 3988 5.050091 CCCGCTAGATTCATGTTTGTGATAC 60.050 44.000 0.00 0.00 0.00 2.24
2123 3989 5.755375 CCGCTAGATTCATGTTTGTGATACT 59.245 40.000 0.00 0.00 0.00 2.12
2124 3990 6.923508 CCGCTAGATTCATGTTTGTGATACTA 59.076 38.462 0.00 0.00 0.00 1.82
2125 3991 7.438160 CCGCTAGATTCATGTTTGTGATACTAA 59.562 37.037 0.00 0.00 0.00 2.24
2126 3992 8.982685 CGCTAGATTCATGTTTGTGATACTAAT 58.017 33.333 0.00 0.00 0.00 1.73
2148 4017 3.252554 ACCCATTTAGCAGTTTTCCCA 57.747 42.857 0.00 0.00 0.00 4.37
2192 4062 8.721019 AGCAAATTTATGACATGGGTAATTTG 57.279 30.769 20.92 20.92 41.95 2.32
2202 4072 6.721668 TGACATGGGTAATTTGTACAAATGGA 59.278 34.615 29.54 19.57 40.57 3.41
2204 4074 8.830915 ACATGGGTAATTTGTACAAATGGATA 57.169 30.769 29.54 17.78 40.57 2.59
2217 4087 6.710499 ACAAATGGATAAAAATGGGGGAAA 57.290 33.333 0.00 0.00 0.00 3.13
2221 4091 5.213868 TGGATAAAAATGGGGGAAAGCTA 57.786 39.130 0.00 0.00 0.00 3.32
2224 4094 6.068735 TGGATAAAAATGGGGGAAAGCTACTA 60.069 38.462 0.00 0.00 0.00 1.82
2226 4096 5.995565 AAAAATGGGGGAAAGCTACTAAC 57.004 39.130 0.00 0.00 0.00 2.34
2242 4112 4.347360 ACTAACTGGGGTAACTGTTGTC 57.653 45.455 2.69 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.158475 TGTCCTTCCAAACTTGCCATCT 60.158 45.455 0.00 0.00 0.00 2.90
24 25 2.562738 CCCAGGAAATTGTTGTCCTTCC 59.437 50.000 0.00 0.00 41.73 3.46
88 91 3.837213 AACTTTGCCGATGATGACAAG 57.163 42.857 0.00 0.00 0.00 3.16
97 100 4.759693 TCATGACAACTTAACTTTGCCGAT 59.240 37.500 0.00 0.00 0.00 4.18
135 138 4.745125 CGACGGCAGTTATTTAGACATGAT 59.255 41.667 0.00 0.00 0.00 2.45
136 139 4.109766 CGACGGCAGTTATTTAGACATGA 58.890 43.478 0.00 0.00 0.00 3.07
137 140 3.245284 CCGACGGCAGTTATTTAGACATG 59.755 47.826 0.00 0.00 0.00 3.21
147 150 4.157289 GGAATATCTATCCGACGGCAGTTA 59.843 45.833 9.66 8.53 0.00 2.24
180 183 9.154847 GCCTTCAAATTTTCTAACAGCAAATAT 57.845 29.630 0.00 0.00 0.00 1.28
181 184 8.147058 TGCCTTCAAATTTTCTAACAGCAAATA 58.853 29.630 0.00 0.00 0.00 1.40
182 185 6.991531 TGCCTTCAAATTTTCTAACAGCAAAT 59.008 30.769 0.00 0.00 0.00 2.32
183 186 6.344500 TGCCTTCAAATTTTCTAACAGCAAA 58.656 32.000 0.00 0.00 0.00 3.68
184 187 5.911752 TGCCTTCAAATTTTCTAACAGCAA 58.088 33.333 0.00 0.00 0.00 3.91
185 188 5.301551 TCTGCCTTCAAATTTTCTAACAGCA 59.698 36.000 0.00 0.00 0.00 4.41
186 189 5.772521 TCTGCCTTCAAATTTTCTAACAGC 58.227 37.500 0.00 0.00 0.00 4.40
187 190 6.974965 ACTCTGCCTTCAAATTTTCTAACAG 58.025 36.000 0.00 0.00 0.00 3.16
188 191 6.959639 ACTCTGCCTTCAAATTTTCTAACA 57.040 33.333 0.00 0.00 0.00 2.41
189 192 9.399403 CTTTACTCTGCCTTCAAATTTTCTAAC 57.601 33.333 0.00 0.00 0.00 2.34
190 193 9.349713 TCTTTACTCTGCCTTCAAATTTTCTAA 57.650 29.630 0.00 0.00 0.00 2.10
206 209 7.464710 GCATCTTTAACACGGATCTTTACTCTG 60.465 40.741 0.00 0.00 0.00 3.35
212 215 3.694566 GGGCATCTTTAACACGGATCTTT 59.305 43.478 0.00 0.00 0.00 2.52
310 315 3.393800 ACAACGATCAACAGTCTCCAAG 58.606 45.455 0.00 0.00 0.00 3.61
365 373 4.157289 CACGTACCCTGATTGTACTGTACT 59.843 45.833 17.98 0.00 37.11 2.73
366 374 4.082571 ACACGTACCCTGATTGTACTGTAC 60.083 45.833 10.98 10.98 37.11 2.90
367 375 4.081406 ACACGTACCCTGATTGTACTGTA 58.919 43.478 0.00 0.00 37.11 2.74
368 376 2.895404 ACACGTACCCTGATTGTACTGT 59.105 45.455 0.00 0.00 37.11 3.55
369 377 3.508762 GACACGTACCCTGATTGTACTG 58.491 50.000 0.00 0.00 37.11 2.74
467 477 5.246429 AGACCGAGAACTTACCAAGATCTTT 59.754 40.000 4.86 0.00 40.27 2.52
497 510 8.947115 GCTATTTCGTGGGCTATTTTAATCTAT 58.053 33.333 0.00 0.00 0.00 1.98
498 511 7.389607 GGCTATTTCGTGGGCTATTTTAATCTA 59.610 37.037 0.00 0.00 0.00 1.98
499 512 6.206829 GGCTATTTCGTGGGCTATTTTAATCT 59.793 38.462 0.00 0.00 0.00 2.40
500 513 6.379386 GGCTATTTCGTGGGCTATTTTAATC 58.621 40.000 0.00 0.00 0.00 1.75
504 517 2.616842 CGGCTATTTCGTGGGCTATTTT 59.383 45.455 0.00 0.00 0.00 1.82
505 518 2.218603 CGGCTATTTCGTGGGCTATTT 58.781 47.619 0.00 0.00 0.00 1.40
506 519 1.878953 CGGCTATTTCGTGGGCTATT 58.121 50.000 0.00 0.00 0.00 1.73
507 520 0.602905 GCGGCTATTTCGTGGGCTAT 60.603 55.000 0.00 0.00 0.00 2.97
509 522 2.513897 GCGGCTATTTCGTGGGCT 60.514 61.111 0.00 0.00 0.00 5.19
511 524 0.319211 TATCGCGGCTATTTCGTGGG 60.319 55.000 6.13 0.00 38.48 4.61
512 525 1.060713 CTATCGCGGCTATTTCGTGG 58.939 55.000 6.13 0.00 38.48 4.94
513 526 0.435008 GCTATCGCGGCTATTTCGTG 59.565 55.000 6.13 0.00 39.20 4.35
514 527 0.314302 AGCTATCGCGGCTATTTCGT 59.686 50.000 6.13 0.00 42.32 3.85
515 528 0.710567 CAGCTATCGCGGCTATTTCG 59.289 55.000 6.13 0.00 42.32 3.46
537 550 2.112718 GCTCCTGGGCAGCTATGG 59.887 66.667 0.37 0.00 33.75 2.74
538 551 2.112718 GGCTCCTGGGCAGCTATG 59.887 66.667 7.26 0.00 40.53 2.23
548 561 3.781770 CTTAGCGGCGAGGCTCCTG 62.782 68.421 12.98 8.10 43.54 3.86
550 563 1.524863 TATCTTAGCGGCGAGGCTCC 61.525 60.000 12.98 1.49 43.54 4.70
552 565 0.244994 CATATCTTAGCGGCGAGGCT 59.755 55.000 12.98 0.00 46.88 4.58
553 566 0.737715 CCATATCTTAGCGGCGAGGC 60.738 60.000 12.98 0.00 0.00 4.70
554 567 0.737715 GCCATATCTTAGCGGCGAGG 60.738 60.000 12.98 0.00 34.26 4.63
555 568 2.743195 GCCATATCTTAGCGGCGAG 58.257 57.895 12.98 0.00 34.26 5.03
556 569 4.988065 GCCATATCTTAGCGGCGA 57.012 55.556 12.98 0.00 34.26 5.54
558 571 0.321122 AGCAGCCATATCTTAGCGGC 60.321 55.000 0.00 0.00 46.20 6.53
559 572 1.436600 CAGCAGCCATATCTTAGCGG 58.563 55.000 0.00 0.00 0.00 5.52
560 573 0.795085 GCAGCAGCCATATCTTAGCG 59.205 55.000 0.00 0.00 33.58 4.26
572 585 4.543084 GGATTTCGCGGCAGCAGC 62.543 66.667 10.08 7.57 45.49 5.25
573 586 2.817423 GAGGATTTCGCGGCAGCAG 61.817 63.158 10.08 1.86 45.49 4.24
576 589 0.179111 TGTAGAGGATTTCGCGGCAG 60.179 55.000 6.13 0.00 0.00 4.85
578 591 2.433868 TATGTAGAGGATTTCGCGGC 57.566 50.000 6.13 0.00 0.00 6.53
579 592 3.193691 AGGATATGTAGAGGATTTCGCGG 59.806 47.826 6.13 0.00 0.00 6.46
580 593 4.156922 AGAGGATATGTAGAGGATTTCGCG 59.843 45.833 0.00 0.00 0.00 5.87
581 594 5.652994 AGAGGATATGTAGAGGATTTCGC 57.347 43.478 0.00 0.00 0.00 4.70
597 610 9.632638 TGCTGATTTTTAAGCTATTTAGAGGAT 57.367 29.630 0.00 0.00 40.21 3.24
604 617 8.156820 AGGGTTTTGCTGATTTTTAAGCTATTT 58.843 29.630 0.00 0.00 40.21 1.40
605 618 7.679783 AGGGTTTTGCTGATTTTTAAGCTATT 58.320 30.769 0.00 0.00 40.21 1.73
607 620 6.295067 GGAGGGTTTTGCTGATTTTTAAGCTA 60.295 38.462 0.00 0.00 40.21 3.32
608 621 5.511373 GGAGGGTTTTGCTGATTTTTAAGCT 60.511 40.000 0.00 0.00 40.21 3.74
609 622 4.690748 GGAGGGTTTTGCTGATTTTTAAGC 59.309 41.667 0.00 0.00 39.96 3.09
610 623 5.852827 TGGAGGGTTTTGCTGATTTTTAAG 58.147 37.500 0.00 0.00 0.00 1.85
611 624 5.878406 TGGAGGGTTTTGCTGATTTTTAA 57.122 34.783 0.00 0.00 0.00 1.52
612 625 5.878406 TTGGAGGGTTTTGCTGATTTTTA 57.122 34.783 0.00 0.00 0.00 1.52
613 626 4.769345 TTGGAGGGTTTTGCTGATTTTT 57.231 36.364 0.00 0.00 0.00 1.94
616 629 4.347583 TGATTTTGGAGGGTTTTGCTGATT 59.652 37.500 0.00 0.00 0.00 2.57
617 630 3.903090 TGATTTTGGAGGGTTTTGCTGAT 59.097 39.130 0.00 0.00 0.00 2.90
618 631 3.303938 TGATTTTGGAGGGTTTTGCTGA 58.696 40.909 0.00 0.00 0.00 4.26
619 632 3.749665 TGATTTTGGAGGGTTTTGCTG 57.250 42.857 0.00 0.00 0.00 4.41
621 688 4.221482 AGAGATGATTTTGGAGGGTTTTGC 59.779 41.667 0.00 0.00 0.00 3.68
624 691 4.570719 GGGAGAGATGATTTTGGAGGGTTT 60.571 45.833 0.00 0.00 0.00 3.27
626 693 2.511637 GGGAGAGATGATTTTGGAGGGT 59.488 50.000 0.00 0.00 0.00 4.34
627 694 2.511218 TGGGAGAGATGATTTTGGAGGG 59.489 50.000 0.00 0.00 0.00 4.30
629 696 5.045012 TGATGGGAGAGATGATTTTGGAG 57.955 43.478 0.00 0.00 0.00 3.86
632 699 7.400599 TTTTCTGATGGGAGAGATGATTTTG 57.599 36.000 0.00 0.00 0.00 2.44
635 702 8.605325 AAATTTTTCTGATGGGAGAGATGATT 57.395 30.769 0.00 0.00 0.00 2.57
636 703 7.287235 GGAAATTTTTCTGATGGGAGAGATGAT 59.713 37.037 3.28 0.00 37.35 2.45
637 704 6.604795 GGAAATTTTTCTGATGGGAGAGATGA 59.395 38.462 3.28 0.00 37.35 2.92
645 712 3.874392 AGCGGAAATTTTTCTGATGGG 57.126 42.857 14.54 0.00 44.44 4.00
646 713 6.237915 GCAAATAGCGGAAATTTTTCTGATGG 60.238 38.462 14.54 3.41 44.44 3.51
648 715 5.812127 GGCAAATAGCGGAAATTTTTCTGAT 59.188 36.000 14.54 11.12 44.44 2.90
649 716 5.167845 GGCAAATAGCGGAAATTTTTCTGA 58.832 37.500 14.54 0.00 44.44 3.27
663 730 0.237498 GGGTAATCGCGGCAAATAGC 59.763 55.000 6.13 2.40 44.65 2.97
664 731 0.511221 CGGGTAATCGCGGCAAATAG 59.489 55.000 6.13 0.00 44.34 1.73
665 732 1.500512 GCGGGTAATCGCGGCAAATA 61.501 55.000 6.13 0.00 46.23 1.40
666 733 2.830285 GCGGGTAATCGCGGCAAAT 61.830 57.895 6.13 0.00 46.23 2.32
667 734 3.501548 GCGGGTAATCGCGGCAAA 61.502 61.111 6.13 0.00 46.23 3.68
684 751 3.576356 CTGTTGCGGCCGCCATAG 61.576 66.667 44.42 36.13 41.09 2.23
697 764 3.076092 CCTCTCCCAGCAGCTGTT 58.924 61.111 21.26 6.37 0.00 3.16
699 766 2.062777 TAGCCTCTCCCAGCAGCTG 61.063 63.158 16.23 16.23 35.03 4.24
701 768 2.503546 GTAGCCTCTCCCAGCAGC 59.496 66.667 0.00 0.00 0.00 5.25
702 769 1.687146 TGGTAGCCTCTCCCAGCAG 60.687 63.158 0.00 0.00 0.00 4.24
703 770 1.990060 GTGGTAGCCTCTCCCAGCA 60.990 63.158 0.00 0.00 0.00 4.41
704 771 2.904131 GTGGTAGCCTCTCCCAGC 59.096 66.667 0.00 0.00 0.00 4.85
705 772 0.970937 TTCGTGGTAGCCTCTCCCAG 60.971 60.000 0.00 0.00 0.00 4.45
706 773 0.543410 TTTCGTGGTAGCCTCTCCCA 60.543 55.000 0.00 0.00 0.00 4.37
707 774 0.831307 ATTTCGTGGTAGCCTCTCCC 59.169 55.000 0.00 0.00 0.00 4.30
708 775 1.536284 CGATTTCGTGGTAGCCTCTCC 60.536 57.143 0.00 0.00 34.11 3.71
709 776 1.841450 CGATTTCGTGGTAGCCTCTC 58.159 55.000 0.00 0.00 34.11 3.20
721 788 1.705256 TCACCGGAGAAACGATTTCG 58.295 50.000 9.46 0.00 44.29 3.46
722 789 3.522553 AGATCACCGGAGAAACGATTTC 58.477 45.455 9.46 0.00 39.96 2.17
724 791 3.611766 AAGATCACCGGAGAAACGATT 57.388 42.857 9.46 0.00 35.47 3.34
726 793 4.401519 AGATTAAGATCACCGGAGAAACGA 59.598 41.667 9.46 0.00 34.60 3.85
727 794 4.683832 AGATTAAGATCACCGGAGAAACG 58.316 43.478 9.46 0.00 34.60 3.60
729 796 6.326583 ACCATAGATTAAGATCACCGGAGAAA 59.673 38.462 9.46 0.00 34.60 2.52
730 797 5.839063 ACCATAGATTAAGATCACCGGAGAA 59.161 40.000 9.46 0.00 34.60 2.87
732 799 5.478679 AGACCATAGATTAAGATCACCGGAG 59.521 44.000 9.46 0.00 34.60 4.63
733 800 5.394738 AGACCATAGATTAAGATCACCGGA 58.605 41.667 9.46 0.00 34.60 5.14
734 801 5.730296 AGACCATAGATTAAGATCACCGG 57.270 43.478 0.00 0.00 34.60 5.28
735 802 8.141909 TGTTAAGACCATAGATTAAGATCACCG 58.858 37.037 0.00 0.00 34.60 4.94
736 803 9.262358 GTGTTAAGACCATAGATTAAGATCACC 57.738 37.037 0.00 0.00 34.60 4.02
737 804 9.817809 TGTGTTAAGACCATAGATTAAGATCAC 57.182 33.333 0.00 0.00 34.60 3.06
738 805 9.817809 GTGTGTTAAGACCATAGATTAAGATCA 57.182 33.333 0.00 0.00 34.60 2.92
739 806 9.262358 GGTGTGTTAAGACCATAGATTAAGATC 57.738 37.037 0.00 0.00 39.59 2.75
740 807 8.768397 TGGTGTGTTAAGACCATAGATTAAGAT 58.232 33.333 0.00 0.00 44.49 2.40
741 808 8.141298 TGGTGTGTTAAGACCATAGATTAAGA 57.859 34.615 0.00 0.00 44.49 2.10
752 819 1.232621 GCCGGTGGTGTGTTAAGACC 61.233 60.000 1.90 0.00 40.24 3.85
770 837 2.284514 CGAACGAACTTCTATTGCTCGC 60.285 50.000 0.00 0.00 32.86 5.03
771 838 2.284514 GCGAACGAACTTCTATTGCTCG 60.285 50.000 0.00 0.00 35.68 5.03
772 839 2.284514 CGCGAACGAACTTCTATTGCTC 60.285 50.000 0.00 0.00 43.93 4.26
773 840 1.654105 CGCGAACGAACTTCTATTGCT 59.346 47.619 0.00 0.00 43.93 3.91
774 841 1.847027 GCGCGAACGAACTTCTATTGC 60.847 52.381 12.10 0.00 43.93 3.56
775 842 1.654105 AGCGCGAACGAACTTCTATTG 59.346 47.619 12.10 0.00 43.93 1.90
776 843 1.918609 GAGCGCGAACGAACTTCTATT 59.081 47.619 12.10 0.00 43.93 1.73
781 848 3.764049 GCGAGCGCGAACGAACTT 61.764 61.111 24.31 0.00 43.93 2.66
783 850 4.754818 GTGCGAGCGCGAACGAAC 62.755 66.667 24.31 20.94 45.51 3.95
863 1078 2.391389 CGGAAAGGTGAAGGCTCGC 61.391 63.158 0.00 0.00 0.00 5.03
870 1085 4.627284 TTACCTGATTCGGAAAGGTGAA 57.373 40.909 19.67 10.12 44.13 3.18
876 1091 3.791953 TGGGTTTACCTGATTCGGAAA 57.208 42.857 0.00 0.00 41.11 3.13
890 1113 1.260544 GGCAAGCAAGAGATGGGTTT 58.739 50.000 0.00 0.00 0.00 3.27
967 1204 0.969917 ACAGACAGCTCTCCGCAGAT 60.970 55.000 0.00 0.00 42.61 2.90
968 1205 1.604879 ACAGACAGCTCTCCGCAGA 60.605 57.895 0.00 0.00 42.61 4.26
1478 1721 1.774110 TTTGCTCTGGTTCTTGCCAA 58.226 45.000 0.00 0.00 38.18 4.52
1583 1826 5.299531 TCACTGAAGTAGGATGAACCGATAG 59.700 44.000 0.00 0.00 44.74 2.08
1602 1845 9.208022 TCTTGACTGAACAGTATTTAATCACTG 57.792 33.333 7.46 12.92 46.15 3.66
1627 1870 8.992835 TGCACATATTCAGTAGTATGATGATC 57.007 34.615 0.00 0.00 33.56 2.92
1689 1932 8.507249 AGATAGAATATTCTTAATTTGTGGCGC 58.493 33.333 22.60 0.00 38.70 6.53
1887 3753 4.036262 CCGAGTTGGTAGAGAGAGATGAAG 59.964 50.000 0.00 0.00 0.00 3.02
2079 3945 5.601313 AGCGGGGTAGAAATAGAATTCACTA 59.399 40.000 8.44 1.02 0.00 2.74
2086 3952 5.836898 TGAATCTAGCGGGGTAGAAATAGAA 59.163 40.000 11.20 0.00 32.72 2.10
2094 3960 3.753294 AACATGAATCTAGCGGGGTAG 57.247 47.619 0.00 0.00 0.00 3.18
2117 3983 9.914834 AAACTGCTAAATGGGTAATTAGTATCA 57.085 29.630 0.00 0.00 32.82 2.15
2122 3988 7.123547 TGGGAAAACTGCTAAATGGGTAATTAG 59.876 37.037 0.00 0.00 33.28 1.73
2123 3989 6.954684 TGGGAAAACTGCTAAATGGGTAATTA 59.045 34.615 0.00 0.00 0.00 1.40
2124 3990 5.782845 TGGGAAAACTGCTAAATGGGTAATT 59.217 36.000 0.00 0.00 0.00 1.40
2125 3991 5.337788 TGGGAAAACTGCTAAATGGGTAAT 58.662 37.500 0.00 0.00 0.00 1.89
2126 3992 4.742012 TGGGAAAACTGCTAAATGGGTAA 58.258 39.130 0.00 0.00 0.00 2.85
2127 3993 4.390129 TGGGAAAACTGCTAAATGGGTA 57.610 40.909 0.00 0.00 0.00 3.69
2128 3994 3.252554 TGGGAAAACTGCTAAATGGGT 57.747 42.857 0.00 0.00 0.00 4.51
2158 4027 8.614346 CCATGTCATAAATTTGCTTAAATTGGG 58.386 33.333 0.00 0.00 33.08 4.12
2179 4048 7.732222 ATCCATTTGTACAAATTACCCATGT 57.268 32.000 27.33 5.39 38.84 3.21
2192 4062 6.800072 TCCCCCATTTTTATCCATTTGTAC 57.200 37.500 0.00 0.00 0.00 2.90
2198 4068 4.634411 AGCTTTCCCCCATTTTTATCCAT 58.366 39.130 0.00 0.00 0.00 3.41
2202 4072 7.342026 CAGTTAGTAGCTTTCCCCCATTTTTAT 59.658 37.037 0.00 0.00 0.00 1.40
2204 4074 5.480422 CAGTTAGTAGCTTTCCCCCATTTTT 59.520 40.000 0.00 0.00 0.00 1.94
2211 4081 1.212195 CCCCAGTTAGTAGCTTTCCCC 59.788 57.143 0.00 0.00 0.00 4.81
2217 4087 3.787742 ACAGTTACCCCAGTTAGTAGCT 58.212 45.455 0.00 0.00 31.10 3.32
2221 4091 3.712733 TGACAACAGTTACCCCAGTTAGT 59.287 43.478 0.00 0.00 0.00 2.24
2224 4094 2.240160 TGTGACAACAGTTACCCCAGTT 59.760 45.455 0.00 0.00 0.00 3.16
2226 4096 2.631160 TGTGACAACAGTTACCCCAG 57.369 50.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.