>input_sequence_85976
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------------------------------------ATGGCGATTCACCTGCTGGCGTTCGTGGCGGCCAAGGGCTTCCT
GCAGGTCTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTTCCTGCCGCTCCTCCGCAACCTTCCCCAGGCCT
GCGTCGTCGTCTGCGGCGCGCTCGCCGCCCACGTCGCCTGGCTGCGCCGCGCGTACGCACGCCGCGGATCCGGAAGCCGC
GACGACGGCC---AGGCCCACCGCCAGTCGATGGTCGACATCGCGTAG--------------------------------
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>chr2D_1_TraesCS2D01G514800
TGTTGGCACGAAGATGGCAAGTTTGGAAGGACAACAATTTCCTGGGA--AAAAATGATCTGGGCCGAAATTGCCATGCTC
GCCAACTAAACTTGTCATCATCGGCAAAGTTAAGTTGTCATGATATAAATTTGATTTATCATGTCTAAATAACTGCCGTC
GGATAGATATTCCGGTCCTAAAATATTTGCTGTTAGAAAATTTGAAGGCAGAGTAAAGATCCGTGTTAAAGATGCCCTTA
ACTCACTGTCATCGGCACTGTGGAGATGA--AAGGCCGCGGAGATCGAAAGCGAGGACCTCGTTGTCAACAGTTCTTGGA
GACTGTTGATCGTTGTCCTTTCTTGTGTGATACAGTACGAGG---AGTACCTAGTACAGTACAATCAGGGTACGTGTCGA
CACCCAAGTAGGGCTGTCTCA--GTGGCAGACATGCAGGCCCCGCCGCCGGTCCCATTGAATTATTTTTATGTTTTAAAG
A---TCTTGGTAAGTTCTCGGTCTTAACCATAGATTAAAATAGCCCACGAAATAGCCGCGATAGCTGCGCCATAGCTGCC
CAGGAGCCTCGCCGCTAAGATATGGCTGCTGCCGCGAAATCCTCTACATATCCTCTAAATAGCTTAAAAATC--------
----------------------------------------------AGCAAAACCCTCCAAAATCATCTCTCCCATCAGA
AAAATTTCCGCTATTTGCCGCGATTACCCGCTATGGCGGCCGCAACAGCTGCTGGGAGAGGCTACCACGAAATCGTTTCT
CCGGTGATCTTAATCTATGGTCTTAACACACCACCGGCGAGCAATAGAAGTTCGTTCGCGCTCGCACCCGGGGAAGGCCG
CGACCTCCCGCCACGCCACCGGCGAAACC---------------------------------------------------
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-----------------AAGACCACACCGCCGCGCCTGCGAGCCTTCACCT--------TTCCGAATCAGGTAAACCCAT
CTCTTGCTTGCCGTAGCACCGCACCGGAG--------------CAGCACCGGCGAGCAAGGGAGCGTGCGGGCGGCGGAG
TGGATCTGCGGAGAGCTGTCTGTGTGGATTAGTTTGATGGCGATTCACCTGCTGGCGTTCGTGGCGGCCAAGGGCTTCCT
GCAGGTCTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTTCCTGCCGCTCCTCCGCAACCTTCCCCAGGCCT
GCGTCGTCGTCTGCGGCGCGCTCGCCGCCCACGTCGCCTGGCTGCGCCGCGCGTACGCACGCCGCGGATCCGGAAGCCGC
GACGACGGCC---AGGCCCACCGCCAGTCGATGGTCGACATCGCGTAGTGAGATGTTTC-AGTTTCTTCTTTCGCTGCAT
GCTTGATCACTGTATTTTGGTTGTAACATTGATCTGAAAATACAAGTAAATTCTGCTATAACC-ACGGATTCTGGCGGGA
TTATTCGCCATGGTAATTCAACGGTGTGGTATTCTGCATTCATTTAGTTGGTTTGCTCTCTGCTGCATCATCTCAAATAC
AACGCTGGAGTTTTTCTTCAGGAGGTTG-TCTGTTTTTTCTTGGCAAGAACCAGAGCAAATCTCGTTCTGAGATGAAACA
GGGGAGCAAGCATAGAAAAATAGAACTTAACTTCCATTCATGTCAGCTCCTTTACCTTCATCTACCTATCGGTTCATCCT
ACTTCAGTGATTAAATACTGTTCAGTCAAGATCATCATACTACTGAATATGTGCATTGCTGAGTCAGCTACACCACCTTC
ATGCATGAGAGGCGCC----------------------------------------------------------------
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-----------------------------------------------ACAAATTAAGAATATTCTATCTCTTAATGTTAT
CTCTACCAATTAGTGCGTGCATGCTCTTAATATCGAAGTGGTGATTATAATTAAATTAGAAATTATGTCTCTGCAAGAAG
ACATCTTGTAAAATGGAGAAAAACATTATATATCTG--------------------------------------------
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---------------------------TGCTAAGAGATCATTTTGTGGATAAGAAA-GACACAACTTTTTAGCTTCATCT
CTCTCTACCAACTCGGCAATTATCCTACGTGGCATCGCTAAAAGAAGATTGTCATCACTAGGGACAAGACAATTGTTAAT
AAGACATCCTTCTCTTATACATACCACATTACCTTTTCTGGTAGGACATCTGTTGTGTCATGCCTCACATACATATAAAT
ATACATGTTTATCAAAATAAATTATAGTGAATTCTATTTCTACCCCGCTAGATTCATGTTTGTGATACTAATTA---CCC
ATTTAGCAGTTTTCCCATAATCTTTACCCAATTTAAGCAAATTTATGACAT-GGGTAATTTGTACAAATGGATAAAAATG
GGGGAAAGCTACTAACTGGGGTAACTGTTGTCACAAAC
>chr2A_1
TGTTGGCACGAGGATGGCAAGTTTAGAAGGACGACAGTTTATTGGAGAGAAAAATGAACTGAGCCGAATTTGCCATGCTC
GCCAACTAAATTTGTCATCCTCGGCAAACTTAAATTTTCATAATAAAAGTTTGATTTGCTATGTCTAAAAAACTGACGTT
GGATAGATATTCCAGTCCTAAATATCCGCTGC-TAGAAAATTTGAAGGTAGAGTGAAGATCCGTGTTAAAGATGCCCTTA
AGTCACTGTCATCGGCACTGTGGAGATGA--AAGGCCGCGGAGATCGAAAGCGAGGACCTGGTTGTCAACAGTT---GGG
GACTGTTGATCGTTGTCCTTTCTTGTGTGATACAGTACGAGG---AGTACCT-----AGTACAATCAGGCTACGTGTCGA
CACCCAAGTAGGGCTGTCTCA--GTGGCAGACATGCAGGCC---CCGCCGGTCCCATTGAATTATTTTTATGTTTTCAAG
A---TCTTGGTAAGTTCTCGGTCTTAAGGCCTCATTTGGTTTGTAGGATTTTTGTAGGAATTCTATAGGATATGATTTGT
AAAGGAAAAATTTCTTTGAAGCCATTTGGTTTGTAGGAATGAATTCCTATTCCTATGTAGGATAGGAATCAATCCTTCAC
GTTTTGGAGAAAAAAACATTAGTCTAAACTCAATGGAAAAAATCCTATCATATGCATCAAATGACATCTCTTTCTCTATA
AAAATTGATATACATGTCATCTCACTTATGATTTTCCTATTCCTATAAAATTCCTATCCTAGGCATCAAAGAAGGCCTAA
-------------------GTCTTAACACACCACCGTGATAACAAAAG---TCGTTCGCCCTCGCA-CCGGGGAAGGCCG
CAACCTCCCGTCACGCCACCGGCGAAACCAAGACCATAATTGGTTTGTTACCCACATTTGACATTGCCAATATTTGACAA
GCCAACATTTGATAAAACTAAAACTTGTCAATATTTGACAACTTTTTGTGAGATAGGAACAAAAATTAACAAACAATCAA
TCTCCAATTATGTTTCAAAGACCACACCACCGCGCCTCCGAGCCATCACCAATTCATCGTTCCGAACCAGGT-AACCCCT
CTCTTTCTTGCCGTAGCACCACACCGGAG--------------CAGCACCGGCGAGCAAGGGAGCGTGCGGGCGGCGGAG
TGGCGCTGCGGAGAGGTGTCTGTGTGGATTAGTTTGATGGCGATCCACCTGCTGGCGTTCGTGGCGGCCAAGGGCTTCCT
GCAGGTCTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTTCCTGCCGCTCCTCCGCAACCTTCCCCAGGCCT
ACGTCGTCGTCTGCGGCGCGCTCGCCGCACACGTCGCCTGGCTGCGCCGCGCGTACGCACGCCGCGGATCCCGAAGCCGC
GACGACGAGGAGGAGGCACACCGCCAGTCGATGGTCGACATCGCGTAGTGAGATGTTTTTAGTTTCTTCTTTCGCTGCAT
GCTTGATCACTGTATTTTGGTTGTAACATTGATCTGAAAATACAAGTAAATTCTACTATAACC-ACGGATTCTGGCGGGA
TTATTCGCCATGGTAATTCAACGGTGTGGTATGCTGCATTCATTTTGTTGGTTTGCTCTCTGCTGCATCATCTCAAATAC
AATGCTGGAGTTTTTCTTCAGGACGATGATCTGTTTTTTCATGGCAAGAACCAGAGCAAATCTCGTTCTGAGCTGAAACA
GGGGGGCAAGCATAGAAAAATAGAACTTAACTTCCATTCATGTCAGCTCCT-----------------------------
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>chr2B_238
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-------------------------------------------------------------------------------A
ACTCAATGTCATCGGCACTGTGGAGATGGCTAAGGCCGCGGAGATCCAAAGCGAGGGCCTCGTTGTCAACAGTTGTTGGA
GACTGTTGATCGTTGTCCTTTCTCGTGTGATACAGTACGAGGATTAGTACCT-----AGTACAATCGGGCTACGTGTCGA
GATCCAAGTAGGGGCTGTTTCATGTGGCAGACGTGCA-GCC---CAGCCGGTCCCATGGAATTATTTTATGTTTCCCAAA
GGAGTCTTGGCAAGTTCTCAGTCTTAACAT--------------------------------------------------
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-------------------------------CACCGTGACAATATCGCAT-----------------CCGGGGAAGGCCG
CAACCTCCCGTCACGCCACCGGCGAAACC---------------------------------------------------
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-----------------AAGAGCACACCACCGCGCCTCCGAGCCATCACCA--------TTCCGAAT----------CAT
TTCTTGCTTGCCGCAGCACCACGCCGGAGCAGCACAGGCGAGTCAGCACCGGCGAGCAAGGGAGCGTGCGGGCGGCGGAG
TGGCGCCGCGGAGAGCTGTCTGTGTGGATTAATTTGATGGCGATCCACCTGCTGGCGTTCGTGGCGGCCAAGGGCTTCCT
GCAGGTCTTCCAGGTCTTGGCGCCGCTGCTGTGGCCGCTCAACCTCTTCCTGCCGCTCCTCCGCAACCTTCCCCAGGCCT
ACGTCGTCGTCTGCGGCGCGCTCGCCGCCCACGTCGCCTGGCTGCGGCGCGCGTACGCACGCCGCGGATCCCCAAGCCGC
GACGACGACG---AGGCCCACCGCCAGTCGATGGTCGACATCGCGTAGTGAGATGTTTC-AGTTTCTTCTTTCGCTGCAT
GTTTGATCACTGTATTTTGGTTGTAACATTGATCTGAAA-TATAAGTAAATTCTGGTATAACCGACGGATTCAGTCGGGC
-TATTCGTCGTGGTAATGCAACGGTG-GGTATTCTCCATTCATTTAGTTGGTTTACTC-------CATCATCTCAAGTAC
AACGCTGGAGTTTTTCTTCAAGAGGTTCATCTGTTTTTTCATGGCAAGAACCAGAGTAAATCTTGTTCTGAGATTAAACA
GGGGAGCAAGCATAGAAAAATAGGACTTAACTTCCATTCACGTCAGCTCCTTTACCTTCATCTACTTATCGGTTCATCCT
ACTTTAGTGATTAAATACTGTTCAGTCAAAATCATCATACTACTGAATATGTGCATTGCTGAGTCAGCTACACCACCTTC
ATGCATGAGAGTCGTTCATCAGTGGAAAAATTTTGTTTTTGCCACTCTAGATTTTGCCAATTTTCCTTATGCCACTCTAG
ATTTTGATATTTCACTTTTGCCACTCTTAGTTTGTGACAATTATCGTAATTGCCATTCTTGTGGCAAAAGCAAAAACTTT
AGAGTGGCAATTATGATACATTTCAAAAGATAAGAGTGCCAAAAATGAAACAAAATTATTTTGCTTTTGCCACGGAATGG
CAATTGCGATAATTGTTAAAAGCTAAGAATGGTAAAAGTGAAATGTCAAAATCTGGAGTGCTTAATTTTTTTTGGCAAAA
TCTATGGTGGCAAAAACAAAATTTTCTCTTCATCAGTGGGGCAGACGACAAATTAAGAATATTCTATCTCTTAATGTTAT
CTCTACCAATTAGTGCGTGCATGCTCTTAATATCAAAGTGGTGATTATAATTAAATTAGAAAATATGTCTCTGCAAGAAG
ACATCTTGTAAAATGGAGAAGAACATTATATATATGTGGAGGTAATATCACCAGTGGTGCTTAAACTTGCCACCGATGTT
CGCTTTAGTGCCTGAACTTGAAAAATACGCTAAACTGGTTCTAGTACTTGGCGCAAACGTGCAAATATAGTGATAATCTC
ATTCATAGACGTATAATGGGCTAATGTGGCACCATATTTTGACCAGTATGCACACGTGGTATGGGACTCATTTACAACAT
ATGATATGCTTTATAAATGCCTCTATGACCGACAGGCCCATATGTCAGCACAAGGGGAAAATAAACGATGAAAATTATAG
CCTATCGGATTCAAACTCGCGATGTTGCACTTGCAAGCCGACTGCGCTCGCCACCTGCCCACTCATTTTCTCATATCCAG
CGGCGAAAATGACGCGCTATGTTACATCTAGCCAGACCAGCATGGCTTTTAGAAAGGCTGCAATCAGTGCTGCCCATTTT
GCGCATGTTAGTTTTTTTTACAAATTTGTAAAAGTTTGTCAACTACAATCACAATAATGAAAATGAATTTCAAATATTGA
TGTGTTAAGTACAAATAAAATAACTTATAATTTTTTAAGATATTCACATTTTTATTAATATTGGCTTGTGATAACTCTCA
CTCGTGGCACGTATTCATAATGTCTATATAACTGAAATATACTCAGGTGTAAATATTTATAAAAAATAATTTTAGATTTT
GCATAGTTATGAATATTTTTTAATTATACAAAAAATTCCTAACAACAAACTTATGAACTATAAAAAGTGCATATAATTAT
TAAAATGTTTGTATAACTAAAATAATATTTATGAATTACAATTTAACAAATATTTATGATATTCTATACTATACTAACAT
TTTTATAATCAGAAATACAATTTAATTTATATGATTTTTCAAAAGTAATACGTCAATACTATTTAAAATTACTTGAACAT
TTTTCTAAATAAGTTTTCTTTTTACGTATAATATTTATAGCACACTAATATTTTAAATTTATATTTATTACTATAATTAT
AATTTACATACCAATTCTAAAAATAAATAAAAGAAAGATAGCATGGGTCGCACTGACTCCAGCCCATTTAAACCACATGG
GCCATATGTGAATGCTATCAGAATACGGTGCCACGTCAGCGCATTATACATCTACAGATAGGATTACCATCGTATTTGCA
CGCTTTTTCCAAGTTTTATAACCAATTCAGTGTATTTTTCAAGTTCAAGTACCAAAATGAACATCGGTGACAAGTTTAAG
CACCACCGATGATATTACCTCTATCTATGCTAAGAGATCATTTTGTGGATAAGAAAAGACACAACTTTTTAGTTTCATCT
CTCTCTACCAACTCCGCAATTATCCTATGTGGCATCGCTAAAAGAATATTGTCATCACTAGGGACAAGACAATTGTTAAT
AAGACATGGTTCTCCTATACATACCACATTACTTTTTCTGGTAGGACATCTGTTGTGTCATGCCTCACACACATA-----
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>chr2A_1697
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-------------------------------------------------AAATTAAGAATATTATATCTCTTAATGTTAT
CTCTACCAATTAGTGTGTGCATGCTCTTAATATCAAAGTGGTGATTAAAATTAAATTAGAAAATAGGTCTCTGCGAGAAG
ACATCCTGTAAAATGGAGAAAGACATTATATATCTG--------------------------------------------
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---------------------------TGCTAAGAGATCATTTTGTGGATAAGAAAAGACACAACTTTTTAGTTTCATCT
CTATCTACCAACTCGGCAATTATGCTACATGGCATCGCTACAAGAAGATTGTCATCACTAGGGACATGACAATTCTTAAT
AAGACATCCTTCTCTTATGCATGGCACATTACCTTTTTTGGTAGGACATATGTTGTGTCATACCTCACATACATATAAAT
ATACATGTTTATTAAAATAAATTACAGTGAACTCTATTTTTACCCC-CTAGATTCATGTTTGCGATATAGTAATTACCCC
ATTTAGCAGTTTTCCC-TAATCTTTAGCCAATTTAAGCAAATTTATGCCATTGGGTAATTTATACAATTGGGTGAAAATG
TGGGAAGGCTGCTGAATGGGGTAACTGTTGTTACAAAC
>SNPs
-----------S------------S-------S---S---SS---SS----------S---S------S-----------
----------S--------S--------S----S--S----S---S--S--------SSS---------S-----S---S
-------------S--------SSSSSSSSSSS---------------S-----S-------------------------
--------------------------------------------------------------------------S-----
----------------------------------------------------SSSSS------------S----------
-----------------------------------------SSS--------------------------------S---
----------------------------SSSSS---SSSS-S-SSSSSSSSS-SSSS-SSS-SSS-SS-SS--SSS-SSS
S-S-SSSSSSSSSSS-SSS-SSSSSS--S-SSSSS-S---SSSS-S-SSS----S-SS-SSSSSSS--SSSS--------
-----------------------------------------------S--S-SS-S--S--SSS-------SS-SSS-S-
------SSSSSSSS-SS-SS-SSSSSSSS-S-S-SS-SSSSS-S-S-SSSSSSSSSSSSSSSSSSSSSS-S-SS-SS-SS
SSSSSSSSSSSSSSSSSSS-----------------SSSSSSS----S-SS--------S------S-------------
-S--------S---------------------------------------------------------------------
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----------------------------S--------S------S-----S---------------------S-------
--------------------S-----------------------------------------------------------
---SS---------------------------------------S-----------------------------------
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S----------------------------------------------------------------------S--------
-------S-S----------------------------------------------------------------------
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----------------------------------------S---------------------------------------
-----------------------------------------------------------------S--------------
----S------------------------S--------------------------------------------------
-----------S--SS----------------------------------------------------------------
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----------------------------------S---------------------------S-----------------
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------------------------------------------------------------------------S-------
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------------S-----------S------S-------S------S---------------S----SSSSSSS------
----------------S---------S--------------------S-------------S-----S---S-S------
S-----S---S--S-S---------------S------
>forward_837
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-----------------TGGTCTTAACACACCACCGG-------------------------------------------
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>reverse_4081
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GGGGAAAGCTACTAACTGGGG-----------------
