Multiple sequence alignment - TraesCS2D01G514500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G514500 chr2D 100.000 2225 0 0 1 2225 606516842 606519066 0.000000e+00 4109.0
1 TraesCS2D01G514500 chr2D 85.369 786 80 16 704 1470 606596558 606597327 0.000000e+00 782.0
2 TraesCS2D01G514500 chr2D 85.630 508 41 21 763 1246 606554734 606555233 2.550000e-139 505.0
3 TraesCS2D01G514500 chr2D 85.065 154 17 3 1027 1174 606637289 606637442 3.830000e-33 152.0
4 TraesCS2D01G514500 chr2D 83.871 155 16 4 1027 1175 606625647 606625798 2.980000e-29 139.0
5 TraesCS2D01G514500 chr2D 100.000 28 0 0 26 53 620907532 620907559 4.000000e-03 52.8
6 TraesCS2D01G514500 chr2A 91.228 1140 56 24 763 1879 738043431 738044549 0.000000e+00 1511.0
7 TraesCS2D01G514500 chr2A 82.310 407 41 12 17 421 738042833 738043210 7.660000e-85 324.0
8 TraesCS2D01G514500 chr2A 87.413 143 12 3 1028 1164 738202644 738202786 2.290000e-35 159.0
9 TraesCS2D01G514500 chr2B 86.534 802 72 22 700 1468 737688585 737689383 0.000000e+00 850.0
10 TraesCS2D01G514500 chr2B 85.224 758 67 33 763 1491 737694092 737694833 0.000000e+00 737.0
11 TraesCS2D01G514500 chr2B 86.708 647 74 9 2 640 737687929 737688571 0.000000e+00 708.0
12 TraesCS2D01G514500 chr2B 85.621 153 16 3 1028 1174 738176031 738176183 2.960000e-34 156.0
13 TraesCS2D01G514500 chr7D 90.789 228 18 3 1894 2120 39555576 39555801 3.590000e-78 302.0
14 TraesCS2D01G514500 chr4A 85.153 229 14 11 2013 2225 645503620 645503844 1.340000e-52 217.0
15 TraesCS2D01G514500 chr4A 89.899 99 9 1 1894 1992 645503533 645503630 2.320000e-25 126.0
16 TraesCS2D01G514500 chr3D 94.595 37 2 0 26 62 307062127 307062163 8.580000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G514500 chr2D 606516842 606519066 2224 False 4109.0 4109 100.000 1 2225 1 chr2D.!!$F1 2224
1 TraesCS2D01G514500 chr2D 606596558 606597327 769 False 782.0 782 85.369 704 1470 1 chr2D.!!$F3 766
2 TraesCS2D01G514500 chr2A 738042833 738044549 1716 False 917.5 1511 86.769 17 1879 2 chr2A.!!$F2 1862
3 TraesCS2D01G514500 chr2B 737687929 737689383 1454 False 779.0 850 86.621 2 1468 2 chr2B.!!$F3 1466
4 TraesCS2D01G514500 chr2B 737694092 737694833 741 False 737.0 737 85.224 763 1491 1 chr2B.!!$F1 728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 272 0.104672 TTGTGGGAGAGGAGGTTCCA 60.105 55.0 0.0 0.0 39.61 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2327 0.106519 ATGGGGAGGAAATTCAGGCG 60.107 55.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 66 4.794648 CGCTCCATCCCCGCCAAA 62.795 66.667 0.00 0.00 0.00 3.28
77 79 1.537135 CCGCCAAAAACGACCATGTTT 60.537 47.619 0.00 0.00 43.60 2.83
129 132 2.672651 TTGCCACATCTGCCCACG 60.673 61.111 0.00 0.00 0.00 4.94
139 142 3.677284 CTGCCCACGAGCATGCTCT 62.677 63.158 37.44 24.80 43.09 4.09
140 143 2.894387 GCCCACGAGCATGCTCTC 60.894 66.667 37.44 19.67 40.69 3.20
143 146 2.729479 CCACGAGCATGCTCTCCCT 61.729 63.158 37.44 19.01 40.69 4.20
145 148 1.088340 CACGAGCATGCTCTCCCTTG 61.088 60.000 37.44 25.74 40.69 3.61
146 149 1.220206 CGAGCATGCTCTCCCTTGT 59.780 57.895 37.44 8.09 40.69 3.16
147 150 0.392193 CGAGCATGCTCTCCCTTGTT 60.392 55.000 37.44 7.31 40.69 2.83
161 169 1.281867 CCTTGTTGTGCTCCATCCCTA 59.718 52.381 0.00 0.00 0.00 3.53
193 201 2.159379 CCACGTTCATCGATGACTGAGA 60.159 50.000 27.28 10.13 42.86 3.27
196 204 3.378427 ACGTTCATCGATGACTGAGATCA 59.622 43.478 27.28 7.82 42.86 2.92
203 211 1.135915 GATGACTGAGATCACGGCACT 59.864 52.381 0.00 0.00 0.00 4.40
227 235 0.250295 CAGAAGCTTGTCCCCGTCAA 60.250 55.000 2.10 0.00 0.00 3.18
228 236 0.693049 AGAAGCTTGTCCCCGTCAAT 59.307 50.000 2.10 0.00 0.00 2.57
263 272 0.104672 TTGTGGGAGAGGAGGTTCCA 60.105 55.000 0.00 0.00 39.61 3.53
276 285 1.202818 AGGTTCCAGTTGAGAGGTTGC 60.203 52.381 0.00 0.00 0.00 4.17
287 296 4.835284 TGAGAGGTTGCCATGTATGTTA 57.165 40.909 0.00 0.00 0.00 2.41
300 309 6.405538 CCATGTATGTTATTTGGTGCCTTTT 58.594 36.000 0.00 0.00 0.00 2.27
306 315 0.250424 ATTTGGTGCCTTTTGCTGCC 60.250 50.000 0.00 0.00 42.00 4.85
335 344 3.571590 GGCCATCCCATATTTTGTACCA 58.428 45.455 0.00 0.00 0.00 3.25
338 347 4.832266 GCCATCCCATATTTTGTACCATCA 59.168 41.667 0.00 0.00 0.00 3.07
357 366 2.419198 CGGCGAGATGGGAAGAGG 59.581 66.667 0.00 0.00 0.00 3.69
394 403 1.301954 GCCCCGTGAATTAGGGTGT 59.698 57.895 10.98 0.00 46.17 4.16
397 406 1.029947 CCCGTGAATTAGGGTGTGCC 61.030 60.000 5.25 0.00 42.67 5.01
398 407 0.322098 CCGTGAATTAGGGTGTGCCA 60.322 55.000 0.00 0.00 36.17 4.92
402 411 3.056891 CGTGAATTAGGGTGTGCCAAAAT 60.057 43.478 0.00 0.00 36.17 1.82
433 442 4.569564 TGATGACATCTGCTTTGAGATTCG 59.430 41.667 16.25 0.00 29.72 3.34
443 452 1.019278 TTGAGATTCGGTTCGCCAGC 61.019 55.000 0.00 0.00 37.00 4.85
545 554 7.185318 TGTTGCCTTGGAAATATGATCATTT 57.815 32.000 14.65 3.49 0.00 2.32
546 555 7.267128 TGTTGCCTTGGAAATATGATCATTTC 58.733 34.615 14.65 12.88 41.96 2.17
580 589 7.827729 AGTCTAAATATGTTACTGTTTCCCCAC 59.172 37.037 0.00 0.00 0.00 4.61
582 591 6.584185 AAATATGTTACTGTTTCCCCACAC 57.416 37.500 0.00 0.00 0.00 3.82
583 592 3.586470 ATGTTACTGTTTCCCCACACA 57.414 42.857 0.00 0.00 0.00 3.72
584 593 2.645802 TGTTACTGTTTCCCCACACAC 58.354 47.619 0.00 0.00 0.00 3.82
648 657 8.755696 TTTTGCATGTAGGAAATTGTATCAAC 57.244 30.769 0.00 0.00 37.40 3.18
649 658 6.449635 TGCATGTAGGAAATTGTATCAACC 57.550 37.500 0.00 0.00 0.00 3.77
650 659 5.359576 TGCATGTAGGAAATTGTATCAACCC 59.640 40.000 0.00 0.00 0.00 4.11
651 660 5.221244 GCATGTAGGAAATTGTATCAACCCC 60.221 44.000 0.00 0.00 0.00 4.95
652 661 5.522315 TGTAGGAAATTGTATCAACCCCA 57.478 39.130 0.00 0.00 0.00 4.96
653 662 5.505780 TGTAGGAAATTGTATCAACCCCAG 58.494 41.667 0.00 0.00 0.00 4.45
654 663 3.365472 AGGAAATTGTATCAACCCCAGC 58.635 45.455 0.00 0.00 0.00 4.85
655 664 3.096092 GGAAATTGTATCAACCCCAGCA 58.904 45.455 0.00 0.00 0.00 4.41
656 665 3.513515 GGAAATTGTATCAACCCCAGCAA 59.486 43.478 0.00 0.00 0.00 3.91
657 666 4.020662 GGAAATTGTATCAACCCCAGCAAA 60.021 41.667 0.00 0.00 0.00 3.68
658 667 5.512232 GGAAATTGTATCAACCCCAGCAAAA 60.512 40.000 0.00 0.00 0.00 2.44
659 668 5.559148 AATTGTATCAACCCCAGCAAAAA 57.441 34.783 0.00 0.00 0.00 1.94
695 704 2.993899 CGAAACTATGTTGCCGACTTCT 59.006 45.455 0.00 0.00 0.00 2.85
696 705 3.432252 CGAAACTATGTTGCCGACTTCTT 59.568 43.478 0.00 0.00 0.00 2.52
697 706 4.434330 CGAAACTATGTTGCCGACTTCTTC 60.434 45.833 0.00 0.00 0.00 2.87
698 707 3.963428 ACTATGTTGCCGACTTCTTCT 57.037 42.857 0.00 0.00 0.00 2.85
699 708 3.851098 ACTATGTTGCCGACTTCTTCTC 58.149 45.455 0.00 0.00 0.00 2.87
700 709 3.511934 ACTATGTTGCCGACTTCTTCTCT 59.488 43.478 0.00 0.00 0.00 3.10
701 710 2.910688 TGTTGCCGACTTCTTCTCTT 57.089 45.000 0.00 0.00 0.00 2.85
702 711 3.194005 TGTTGCCGACTTCTTCTCTTT 57.806 42.857 0.00 0.00 0.00 2.52
706 715 4.073293 TGCCGACTTCTTCTCTTTTCTT 57.927 40.909 0.00 0.00 0.00 2.52
718 727 1.140052 TCTTTTCTTGTCGACTGGCCA 59.860 47.619 17.92 4.71 0.00 5.36
758 767 4.814294 CCGACCCGCCAGCAGTAC 62.814 72.222 0.00 0.00 0.00 2.73
778 840 1.204704 CCAGGAGACGTCATGTTGCTA 59.795 52.381 19.50 0.00 32.31 3.49
803 874 1.000283 CCATGTCTATCCGTCTCAGCC 60.000 57.143 0.00 0.00 0.00 4.85
804 875 0.955178 ATGTCTATCCGTCTCAGCCG 59.045 55.000 0.00 0.00 0.00 5.52
869 953 0.970427 CCCCCGCAAAAGCATAACCT 60.970 55.000 0.00 0.00 0.00 3.50
880 964 1.305219 GCATAACCTCACCAGCGCAA 61.305 55.000 11.47 0.00 0.00 4.85
888 979 4.569180 ACCAGCGCAACAGCCACT 62.569 61.111 11.47 0.00 38.01 4.00
912 1003 0.391263 GCCATTCCGACTTCCGAACT 60.391 55.000 0.00 0.00 41.76 3.01
915 1006 3.592059 CCATTCCGACTTCCGAACTAAA 58.408 45.455 0.00 0.00 41.76 1.85
934 1025 1.674359 ACCAACACATTTGTCGCTCA 58.326 45.000 0.00 0.00 33.55 4.26
1083 1177 2.348998 CCGCTCAACCTCTGGCTT 59.651 61.111 0.00 0.00 0.00 4.35
1084 1178 1.302832 CCGCTCAACCTCTGGCTTT 60.303 57.895 0.00 0.00 0.00 3.51
1258 1352 3.741344 CGGACAGTTTCTTCAGTTTCGAT 59.259 43.478 0.00 0.00 0.00 3.59
1299 1398 1.151668 GCTAGCTGCGGAATATGTGG 58.848 55.000 7.70 0.00 0.00 4.17
1331 1455 7.441836 TGGTTGTAGCATCGATCTGTAAATAT 58.558 34.615 0.00 0.00 0.00 1.28
1334 1463 9.627395 GTTGTAGCATCGATCTGTAAATATACT 57.373 33.333 0.00 0.00 32.98 2.12
1357 1486 4.651778 AGTAGTAATTTCTGCAAGCACCA 58.348 39.130 3.22 0.00 0.00 4.17
1449 1588 6.012658 TCAGGAGATTCATTTGTTTTTCCG 57.987 37.500 0.00 0.00 0.00 4.30
1454 1599 0.315568 TCATTTGTTTTTCCGGGCCG 59.684 50.000 21.46 21.46 0.00 6.13
1491 1636 7.530426 AAGCAAACTTCCTTGTGAGATTATT 57.470 32.000 0.00 0.00 0.00 1.40
1544 1689 4.557205 ACTTGTCATCTACTTGTCGGTTC 58.443 43.478 0.00 0.00 0.00 3.62
1622 1767 5.340010 TCAGTCGCGATCATACTAAGTAC 57.660 43.478 14.06 0.00 0.00 2.73
1655 1800 0.957395 GAGTCAGCCACACCACCATG 60.957 60.000 0.00 0.00 0.00 3.66
1773 1918 1.670083 CAACCGGGGTCCTCGAAAC 60.670 63.158 14.38 0.00 0.00 2.78
1821 1966 9.819267 AAACTGATTCTATAGGTAAAGTACAGC 57.181 33.333 0.00 0.00 0.00 4.40
1828 1973 3.572604 AGGTAAAGTACAGCGTGTCTC 57.427 47.619 0.00 0.00 0.00 3.36
1832 1977 3.386768 AAAGTACAGCGTGTCTCACAT 57.613 42.857 0.00 0.00 33.40 3.21
1846 1991 4.072131 GTCTCACATGGTGAAGGCTAAAA 58.928 43.478 0.00 0.00 42.26 1.52
1854 1999 3.882888 TGGTGAAGGCTAAAAGTTGACTG 59.117 43.478 0.00 0.00 0.00 3.51
1879 2024 3.421394 TGGGTCTCCTCCACTATTCAT 57.579 47.619 0.00 0.00 0.00 2.57
1880 2025 4.552883 TGGGTCTCCTCCACTATTCATA 57.447 45.455 0.00 0.00 0.00 2.15
1881 2026 4.890988 TGGGTCTCCTCCACTATTCATAA 58.109 43.478 0.00 0.00 0.00 1.90
1882 2027 4.901849 TGGGTCTCCTCCACTATTCATAAG 59.098 45.833 0.00 0.00 0.00 1.73
1883 2028 4.902448 GGGTCTCCTCCACTATTCATAAGT 59.098 45.833 0.00 0.00 0.00 2.24
1884 2029 5.367060 GGGTCTCCTCCACTATTCATAAGTT 59.633 44.000 0.00 0.00 0.00 2.66
1885 2030 6.126739 GGGTCTCCTCCACTATTCATAAGTTT 60.127 42.308 0.00 0.00 0.00 2.66
1886 2031 6.763610 GGTCTCCTCCACTATTCATAAGTTTG 59.236 42.308 0.00 0.00 0.00 2.93
1887 2032 6.258947 GTCTCCTCCACTATTCATAAGTTTGC 59.741 42.308 0.00 0.00 0.00 3.68
1888 2033 6.061022 TCCTCCACTATTCATAAGTTTGCA 57.939 37.500 0.00 0.00 0.00 4.08
1889 2034 5.880332 TCCTCCACTATTCATAAGTTTGCAC 59.120 40.000 0.00 0.00 0.00 4.57
1890 2035 5.647658 CCTCCACTATTCATAAGTTTGCACA 59.352 40.000 0.00 0.00 0.00 4.57
1891 2036 6.150976 CCTCCACTATTCATAAGTTTGCACAA 59.849 38.462 0.00 0.00 0.00 3.33
1892 2037 7.309133 CCTCCACTATTCATAAGTTTGCACAAA 60.309 37.037 0.00 0.00 0.00 2.83
1901 2046 3.289797 TTTGCACAAACACTCCCCA 57.710 47.368 0.00 0.00 0.00 4.96
1902 2047 1.561643 TTTGCACAAACACTCCCCAA 58.438 45.000 0.00 0.00 0.00 4.12
1903 2048 1.786937 TTGCACAAACACTCCCCAAT 58.213 45.000 0.00 0.00 0.00 3.16
1904 2049 1.327303 TGCACAAACACTCCCCAATC 58.673 50.000 0.00 0.00 0.00 2.67
1905 2050 0.240945 GCACAAACACTCCCCAATCG 59.759 55.000 0.00 0.00 0.00 3.34
1906 2051 1.604604 CACAAACACTCCCCAATCGT 58.395 50.000 0.00 0.00 0.00 3.73
1907 2052 1.953686 CACAAACACTCCCCAATCGTT 59.046 47.619 0.00 0.00 0.00 3.85
1908 2053 2.360801 CACAAACACTCCCCAATCGTTT 59.639 45.455 0.00 0.00 0.00 3.60
1909 2054 3.028130 ACAAACACTCCCCAATCGTTTT 58.972 40.909 0.00 0.00 0.00 2.43
1910 2055 3.067601 ACAAACACTCCCCAATCGTTTTC 59.932 43.478 0.00 0.00 0.00 2.29
1911 2056 1.905637 ACACTCCCCAATCGTTTTCC 58.094 50.000 0.00 0.00 0.00 3.13
1912 2057 1.423921 ACACTCCCCAATCGTTTTCCT 59.576 47.619 0.00 0.00 0.00 3.36
1913 2058 2.158519 ACACTCCCCAATCGTTTTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
1914 2059 2.228822 CACTCCCCAATCGTTTTCCTTG 59.771 50.000 0.00 0.00 0.00 3.61
1915 2060 1.202348 CTCCCCAATCGTTTTCCTTGC 59.798 52.381 0.00 0.00 0.00 4.01
1916 2061 0.965439 CCCCAATCGTTTTCCTTGCA 59.035 50.000 0.00 0.00 0.00 4.08
1917 2062 1.342819 CCCCAATCGTTTTCCTTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
1918 2063 2.028203 CCCCAATCGTTTTCCTTGCAAT 60.028 45.455 0.00 0.00 0.00 3.56
1919 2064 3.253230 CCCAATCGTTTTCCTTGCAATC 58.747 45.455 0.00 0.00 0.00 2.67
1920 2065 3.253230 CCAATCGTTTTCCTTGCAATCC 58.747 45.455 0.00 0.00 0.00 3.01
1921 2066 2.916716 CAATCGTTTTCCTTGCAATCCG 59.083 45.455 0.00 0.00 0.00 4.18
1922 2067 1.885560 TCGTTTTCCTTGCAATCCGA 58.114 45.000 0.00 0.00 0.00 4.55
1923 2068 2.222886 TCGTTTTCCTTGCAATCCGAA 58.777 42.857 0.00 0.00 0.00 4.30
1924 2069 2.619177 TCGTTTTCCTTGCAATCCGAAA 59.381 40.909 0.00 6.02 0.00 3.46
1925 2070 3.254657 TCGTTTTCCTTGCAATCCGAAAT 59.745 39.130 13.89 0.00 0.00 2.17
1926 2071 3.608073 CGTTTTCCTTGCAATCCGAAATC 59.392 43.478 13.89 12.49 0.00 2.17
1927 2072 4.555262 GTTTTCCTTGCAATCCGAAATCA 58.445 39.130 13.89 2.47 0.00 2.57
1928 2073 4.862902 TTTCCTTGCAATCCGAAATCAA 57.137 36.364 0.00 0.00 0.00 2.57
1929 2074 4.439305 TTCCTTGCAATCCGAAATCAAG 57.561 40.909 0.00 0.00 35.26 3.02
1930 2075 2.164219 TCCTTGCAATCCGAAATCAAGC 59.836 45.455 0.00 0.00 34.44 4.01
1931 2076 2.533266 CTTGCAATCCGAAATCAAGCC 58.467 47.619 0.00 0.00 0.00 4.35
1932 2077 1.838112 TGCAATCCGAAATCAAGCCT 58.162 45.000 0.00 0.00 0.00 4.58
1933 2078 1.473677 TGCAATCCGAAATCAAGCCTG 59.526 47.619 0.00 0.00 0.00 4.85
1934 2079 1.800286 GCAATCCGAAATCAAGCCTGC 60.800 52.381 0.00 0.00 0.00 4.85
1935 2080 1.473677 CAATCCGAAATCAAGCCTGCA 59.526 47.619 0.00 0.00 0.00 4.41
1936 2081 1.838112 ATCCGAAATCAAGCCTGCAA 58.162 45.000 0.00 0.00 0.00 4.08
1937 2082 0.881118 TCCGAAATCAAGCCTGCAAC 59.119 50.000 0.00 0.00 0.00 4.17
1938 2083 0.109132 CCGAAATCAAGCCTGCAACC 60.109 55.000 0.00 0.00 0.00 3.77
1939 2084 0.883833 CGAAATCAAGCCTGCAACCT 59.116 50.000 0.00 0.00 0.00 3.50
1940 2085 2.083774 CGAAATCAAGCCTGCAACCTA 58.916 47.619 0.00 0.00 0.00 3.08
1941 2086 2.684881 CGAAATCAAGCCTGCAACCTAT 59.315 45.455 0.00 0.00 0.00 2.57
1942 2087 3.876914 CGAAATCAAGCCTGCAACCTATA 59.123 43.478 0.00 0.00 0.00 1.31
1943 2088 4.516698 CGAAATCAAGCCTGCAACCTATAT 59.483 41.667 0.00 0.00 0.00 0.86
1944 2089 5.334414 CGAAATCAAGCCTGCAACCTATATC 60.334 44.000 0.00 0.00 0.00 1.63
1945 2090 3.492102 TCAAGCCTGCAACCTATATCC 57.508 47.619 0.00 0.00 0.00 2.59
1946 2091 2.106511 TCAAGCCTGCAACCTATATCCC 59.893 50.000 0.00 0.00 0.00 3.85
1947 2092 0.687354 AGCCTGCAACCTATATCCCG 59.313 55.000 0.00 0.00 0.00 5.14
1948 2093 0.685097 GCCTGCAACCTATATCCCGA 59.315 55.000 0.00 0.00 0.00 5.14
1949 2094 1.608283 GCCTGCAACCTATATCCCGAC 60.608 57.143 0.00 0.00 0.00 4.79
1950 2095 1.336887 CCTGCAACCTATATCCCGACG 60.337 57.143 0.00 0.00 0.00 5.12
1951 2096 0.677288 TGCAACCTATATCCCGACGG 59.323 55.000 6.99 6.99 0.00 4.79
1952 2097 0.669625 GCAACCTATATCCCGACGGC 60.670 60.000 8.86 0.00 0.00 5.68
1953 2098 0.388134 CAACCTATATCCCGACGGCG 60.388 60.000 1.94 1.94 37.24 6.46
1986 2131 5.034554 CATGTATATGCCGGAACAATCAC 57.965 43.478 5.05 0.00 0.00 3.06
1987 2132 3.472652 TGTATATGCCGGAACAATCACC 58.527 45.455 5.05 0.00 0.00 4.02
1988 2133 2.727123 ATATGCCGGAACAATCACCA 57.273 45.000 5.05 0.00 0.00 4.17
1989 2134 1.745232 TATGCCGGAACAATCACCAC 58.255 50.000 5.05 0.00 0.00 4.16
1990 2135 1.305219 ATGCCGGAACAATCACCACG 61.305 55.000 5.05 0.00 0.00 4.94
1991 2136 1.669760 GCCGGAACAATCACCACGA 60.670 57.895 5.05 0.00 0.00 4.35
1992 2137 1.024579 GCCGGAACAATCACCACGAT 61.025 55.000 5.05 0.00 35.12 3.73
1993 2138 0.726827 CCGGAACAATCACCACGATG 59.273 55.000 0.00 0.00 33.40 3.84
1994 2139 0.726827 CGGAACAATCACCACGATGG 59.273 55.000 0.00 0.00 45.02 3.51
1995 2140 1.674519 CGGAACAATCACCACGATGGA 60.675 52.381 10.46 0.00 40.96 3.41
1996 2141 2.432444 GGAACAATCACCACGATGGAA 58.568 47.619 10.46 0.22 40.96 3.53
1997 2142 3.016736 GGAACAATCACCACGATGGAAT 58.983 45.455 10.46 2.24 40.96 3.01
1998 2143 3.181497 GGAACAATCACCACGATGGAATG 60.181 47.826 10.46 6.40 40.96 2.67
1999 2144 2.368439 ACAATCACCACGATGGAATGG 58.632 47.619 10.46 0.00 40.96 3.16
2000 2145 1.677576 CAATCACCACGATGGAATGGG 59.322 52.381 10.46 0.00 40.96 4.00
2001 2146 0.918983 ATCACCACGATGGAATGGGT 59.081 50.000 10.46 0.00 40.96 4.51
2002 2147 0.251916 TCACCACGATGGAATGGGTC 59.748 55.000 10.46 0.00 40.96 4.46
2003 2148 0.253044 CACCACGATGGAATGGGTCT 59.747 55.000 10.46 0.00 40.96 3.85
2004 2149 0.253044 ACCACGATGGAATGGGTCTG 59.747 55.000 10.46 0.00 40.96 3.51
2005 2150 1.097547 CCACGATGGAATGGGTCTGC 61.098 60.000 0.00 0.00 40.96 4.26
2006 2151 1.097547 CACGATGGAATGGGTCTGCC 61.098 60.000 0.00 0.00 0.00 4.85
2015 2160 2.509422 GGGTCTGCCCGGGTAATC 59.491 66.667 24.63 13.07 46.51 1.75
2016 2161 2.108362 GGTCTGCCCGGGTAATCG 59.892 66.667 24.63 6.10 0.00 3.34
2017 2162 2.588034 GTCTGCCCGGGTAATCGC 60.588 66.667 24.63 6.78 0.00 4.58
2018 2163 3.857038 TCTGCCCGGGTAATCGCC 61.857 66.667 24.63 3.28 0.00 5.54
2037 2182 2.125673 CGACGGCCACGAAGGAAT 60.126 61.111 13.04 0.00 44.60 3.01
2038 2183 1.140161 CGACGGCCACGAAGGAATA 59.860 57.895 13.04 0.00 44.60 1.75
2039 2184 1.143969 CGACGGCCACGAAGGAATAC 61.144 60.000 13.04 0.00 44.60 1.89
2040 2185 0.108520 GACGGCCACGAAGGAATACA 60.109 55.000 2.24 0.00 44.60 2.29
2041 2186 0.539986 ACGGCCACGAAGGAATACAT 59.460 50.000 2.24 0.00 44.60 2.29
2042 2187 1.217882 CGGCCACGAAGGAATACATC 58.782 55.000 2.24 0.00 44.60 3.06
2043 2188 1.202533 CGGCCACGAAGGAATACATCT 60.203 52.381 2.24 0.00 44.60 2.90
2044 2189 2.484889 GGCCACGAAGGAATACATCTC 58.515 52.381 0.00 0.00 41.22 2.75
2045 2190 2.484889 GCCACGAAGGAATACATCTCC 58.515 52.381 2.86 0.00 41.22 3.71
2046 2191 2.807108 GCCACGAAGGAATACATCTCCC 60.807 54.545 2.86 0.00 41.22 4.30
2047 2192 2.700897 CCACGAAGGAATACATCTCCCT 59.299 50.000 0.00 0.00 41.22 4.20
2048 2193 3.895656 CCACGAAGGAATACATCTCCCTA 59.104 47.826 0.00 0.00 41.22 3.53
2049 2194 4.262079 CCACGAAGGAATACATCTCCCTAC 60.262 50.000 0.00 0.00 41.22 3.18
2050 2195 4.585162 CACGAAGGAATACATCTCCCTACT 59.415 45.833 0.00 0.00 32.95 2.57
2051 2196 4.585162 ACGAAGGAATACATCTCCCTACTG 59.415 45.833 0.00 0.00 32.95 2.74
2052 2197 4.559704 CGAAGGAATACATCTCCCTACTGC 60.560 50.000 0.00 0.00 32.95 4.40
2053 2198 3.243724 AGGAATACATCTCCCTACTGCC 58.756 50.000 0.00 0.00 32.95 4.85
2054 2199 2.028930 GGAATACATCTCCCTACTGCCG 60.029 54.545 0.00 0.00 0.00 5.69
2055 2200 2.677542 ATACATCTCCCTACTGCCGA 57.322 50.000 0.00 0.00 0.00 5.54
2056 2201 2.677542 TACATCTCCCTACTGCCGAT 57.322 50.000 0.00 0.00 0.00 4.18
2057 2202 2.677542 ACATCTCCCTACTGCCGATA 57.322 50.000 0.00 0.00 0.00 2.92
2058 2203 2.240279 ACATCTCCCTACTGCCGATAC 58.760 52.381 0.00 0.00 0.00 2.24
2059 2204 2.158445 ACATCTCCCTACTGCCGATACT 60.158 50.000 0.00 0.00 0.00 2.12
2060 2205 1.982660 TCTCCCTACTGCCGATACTG 58.017 55.000 0.00 0.00 0.00 2.74
2061 2206 0.315568 CTCCCTACTGCCGATACTGC 59.684 60.000 0.00 0.00 0.00 4.40
2062 2207 1.113517 TCCCTACTGCCGATACTGCC 61.114 60.000 0.00 0.00 0.00 4.85
2063 2208 1.007271 CCTACTGCCGATACTGCCG 60.007 63.158 0.00 0.00 0.00 5.69
2064 2209 1.452953 CCTACTGCCGATACTGCCGA 61.453 60.000 0.00 0.00 0.00 5.54
2065 2210 0.598562 CTACTGCCGATACTGCCGAT 59.401 55.000 0.00 0.00 0.00 4.18
2066 2211 0.596577 TACTGCCGATACTGCCGATC 59.403 55.000 0.00 0.00 0.00 3.69
2067 2212 1.373497 CTGCCGATACTGCCGATCC 60.373 63.158 0.00 0.00 0.00 3.36
2068 2213 2.430921 GCCGATACTGCCGATCCG 60.431 66.667 0.00 0.00 0.00 4.18
2069 2214 2.430921 CCGATACTGCCGATCCGC 60.431 66.667 0.00 0.00 0.00 5.54
2070 2215 2.335011 CGATACTGCCGATCCGCA 59.665 61.111 8.47 8.47 37.19 5.69
2071 2216 1.080501 CGATACTGCCGATCCGCAT 60.081 57.895 9.21 3.34 38.30 4.73
2072 2217 1.347097 CGATACTGCCGATCCGCATG 61.347 60.000 9.21 6.58 38.30 4.06
2073 2218 1.004560 ATACTGCCGATCCGCATGG 60.005 57.895 9.21 1.85 38.30 3.66
2074 2219 1.758440 ATACTGCCGATCCGCATGGT 61.758 55.000 9.21 7.53 38.30 3.55
2075 2220 2.642996 TACTGCCGATCCGCATGGTG 62.643 60.000 9.21 0.82 38.30 4.17
2076 2221 4.854924 TGCCGATCCGCATGGTGG 62.855 66.667 4.51 0.00 36.30 4.61
2077 2222 4.545706 GCCGATCCGCATGGTGGA 62.546 66.667 0.38 0.38 46.70 4.02
2078 2223 2.189257 CCGATCCGCATGGTGGAA 59.811 61.111 2.23 0.00 45.75 3.53
2079 2224 1.889105 CCGATCCGCATGGTGGAAG 60.889 63.158 2.23 0.78 45.75 3.46
2080 2225 1.889105 CGATCCGCATGGTGGAAGG 60.889 63.158 2.23 0.00 45.75 3.46
2081 2226 1.526917 GATCCGCATGGTGGAAGGG 60.527 63.158 2.23 0.00 45.75 3.95
2082 2227 2.270874 GATCCGCATGGTGGAAGGGT 62.271 60.000 2.23 0.00 45.75 4.34
2083 2228 2.270874 ATCCGCATGGTGGAAGGGTC 62.271 60.000 2.23 0.00 45.75 4.46
2084 2229 2.438434 CGCATGGTGGAAGGGTCC 60.438 66.667 0.00 0.00 45.21 4.46
2085 2230 2.971598 CGCATGGTGGAAGGGTCCT 61.972 63.158 0.00 0.00 45.22 3.85
2086 2231 1.077429 GCATGGTGGAAGGGTCCTC 60.077 63.158 0.00 0.00 45.22 3.71
2095 2240 4.332543 AGGGTCCTCCTTGCCGGA 62.333 66.667 5.05 0.00 45.47 5.14
2096 2241 3.090532 GGGTCCTCCTTGCCGGAT 61.091 66.667 5.05 0.00 42.12 4.18
2097 2242 1.764854 GGGTCCTCCTTGCCGGATA 60.765 63.158 5.05 0.00 42.12 2.59
2098 2243 1.446366 GGTCCTCCTTGCCGGATAC 59.554 63.158 5.05 0.00 42.12 2.24
2110 2255 4.617875 GGATACGCTGCAACCAGT 57.382 55.556 0.00 0.00 41.26 4.00
2111 2256 2.384203 GGATACGCTGCAACCAGTC 58.616 57.895 0.00 0.00 41.26 3.51
2112 2257 0.391130 GGATACGCTGCAACCAGTCA 60.391 55.000 0.00 0.00 41.26 3.41
2113 2258 0.721718 GATACGCTGCAACCAGTCAC 59.278 55.000 0.00 0.00 41.26 3.67
2114 2259 0.673644 ATACGCTGCAACCAGTCACC 60.674 55.000 0.00 0.00 41.26 4.02
2115 2260 2.034048 TACGCTGCAACCAGTCACCA 62.034 55.000 0.00 0.00 41.26 4.17
2116 2261 1.968017 CGCTGCAACCAGTCACCAT 60.968 57.895 0.00 0.00 41.26 3.55
2117 2262 1.582968 GCTGCAACCAGTCACCATG 59.417 57.895 0.00 0.00 41.26 3.66
2118 2263 1.870055 GCTGCAACCAGTCACCATGG 61.870 60.000 11.19 11.19 43.87 3.66
2119 2264 1.870055 CTGCAACCAGTCACCATGGC 61.870 60.000 13.04 0.00 41.87 4.40
2120 2265 2.981560 GCAACCAGTCACCATGGCG 61.982 63.158 13.04 1.26 41.87 5.69
2121 2266 2.034066 AACCAGTCACCATGGCGG 59.966 61.111 13.04 4.40 41.87 6.13
2122 2267 3.567579 AACCAGTCACCATGGCGGG 62.568 63.158 13.04 8.60 43.10 6.13
2123 2268 4.033776 CCAGTCACCATGGCGGGT 62.034 66.667 13.04 0.00 43.56 5.28
2124 2269 2.034066 CAGTCACCATGGCGGGTT 59.966 61.111 13.04 0.00 39.79 4.11
2125 2270 2.040544 CAGTCACCATGGCGGGTTC 61.041 63.158 13.04 0.00 39.79 3.62
2126 2271 2.224159 AGTCACCATGGCGGGTTCT 61.224 57.895 13.04 0.00 39.79 3.01
2127 2272 2.040544 GTCACCATGGCGGGTTCTG 61.041 63.158 13.04 0.00 39.79 3.02
2128 2273 2.220586 TCACCATGGCGGGTTCTGA 61.221 57.895 13.04 2.90 39.79 3.27
2129 2274 1.077501 CACCATGGCGGGTTCTGAT 60.078 57.895 13.04 0.00 39.79 2.90
2130 2275 1.077501 ACCATGGCGGGTTCTGATG 60.078 57.895 13.04 0.00 38.19 3.07
2131 2276 1.077501 CCATGGCGGGTTCTGATGT 60.078 57.895 0.00 0.00 0.00 3.06
2132 2277 0.680921 CCATGGCGGGTTCTGATGTT 60.681 55.000 0.00 0.00 0.00 2.71
2133 2278 0.734889 CATGGCGGGTTCTGATGTTC 59.265 55.000 0.00 0.00 0.00 3.18
2134 2279 0.744414 ATGGCGGGTTCTGATGTTCG 60.744 55.000 0.00 0.00 0.00 3.95
2135 2280 2.106683 GGCGGGTTCTGATGTTCGG 61.107 63.158 0.00 0.00 0.00 4.30
2136 2281 2.106683 GCGGGTTCTGATGTTCGGG 61.107 63.158 0.00 0.00 0.00 5.14
2137 2282 1.594833 CGGGTTCTGATGTTCGGGA 59.405 57.895 0.00 0.00 0.00 5.14
2138 2283 0.739813 CGGGTTCTGATGTTCGGGAC 60.740 60.000 0.00 0.00 30.21 4.46
2161 2306 5.670149 GATGAATCTGCATCGACTTTGAT 57.330 39.130 0.00 0.00 35.77 2.57
2162 2307 4.870221 TGAATCTGCATCGACTTTGATG 57.130 40.909 2.44 2.44 46.78 3.07
2163 2308 3.624410 TGAATCTGCATCGACTTTGATGG 59.376 43.478 8.29 0.00 44.72 3.51
2164 2309 1.372582 TCTGCATCGACTTTGATGGC 58.627 50.000 8.29 2.47 44.72 4.40
2165 2310 1.065926 TCTGCATCGACTTTGATGGCT 60.066 47.619 8.29 0.00 44.72 4.75
2166 2311 1.063616 CTGCATCGACTTTGATGGCTG 59.936 52.381 8.29 2.50 44.72 4.85
2167 2312 0.379669 GCATCGACTTTGATGGCTGG 59.620 55.000 8.29 0.00 44.72 4.85
2168 2313 2.013563 GCATCGACTTTGATGGCTGGA 61.014 52.381 8.29 0.00 44.72 3.86
2169 2314 2.358957 CATCGACTTTGATGGCTGGAA 58.641 47.619 0.00 0.00 41.63 3.53
2170 2315 1.808411 TCGACTTTGATGGCTGGAAC 58.192 50.000 0.00 0.00 0.00 3.62
2171 2316 0.804989 CGACTTTGATGGCTGGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2172 2317 1.611673 CGACTTTGATGGCTGGAACCT 60.612 52.381 0.00 0.00 0.00 3.50
2173 2318 1.815003 GACTTTGATGGCTGGAACCTG 59.185 52.381 0.00 0.00 0.00 4.00
2174 2319 0.529378 CTTTGATGGCTGGAACCTGC 59.471 55.000 13.06 13.06 39.65 4.85
2175 2320 0.112995 TTTGATGGCTGGAACCTGCT 59.887 50.000 18.97 3.91 40.14 4.24
2176 2321 0.112995 TTGATGGCTGGAACCTGCTT 59.887 50.000 18.97 9.58 40.14 3.91
2177 2322 0.609957 TGATGGCTGGAACCTGCTTG 60.610 55.000 18.97 0.00 40.14 4.01
2178 2323 1.941999 GATGGCTGGAACCTGCTTGC 61.942 60.000 18.97 6.60 40.14 4.01
2179 2324 3.376918 GGCTGGAACCTGCTTGCC 61.377 66.667 18.97 8.85 40.14 4.52
2180 2325 3.741476 GCTGGAACCTGCTTGCCG 61.741 66.667 13.95 0.00 37.80 5.69
2181 2326 2.281761 CTGGAACCTGCTTGCCGT 60.282 61.111 0.00 0.00 0.00 5.68
2182 2327 2.281484 TGGAACCTGCTTGCCGTC 60.281 61.111 0.00 0.00 0.00 4.79
2183 2328 3.423154 GGAACCTGCTTGCCGTCG 61.423 66.667 0.00 0.00 0.00 5.12
2184 2329 4.090057 GAACCTGCTTGCCGTCGC 62.090 66.667 0.00 0.00 0.00 5.19
2189 2334 4.617520 TGCTTGCCGTCGCCTGAA 62.618 61.111 0.00 0.00 0.00 3.02
2190 2335 3.127533 GCTTGCCGTCGCCTGAAT 61.128 61.111 0.00 0.00 0.00 2.57
2191 2336 2.690778 GCTTGCCGTCGCCTGAATT 61.691 57.895 0.00 0.00 0.00 2.17
2192 2337 1.875963 CTTGCCGTCGCCTGAATTT 59.124 52.632 0.00 0.00 0.00 1.82
2193 2338 0.179189 CTTGCCGTCGCCTGAATTTC 60.179 55.000 0.00 0.00 0.00 2.17
2194 2339 1.582610 TTGCCGTCGCCTGAATTTCC 61.583 55.000 0.00 0.00 0.00 3.13
2195 2340 1.745489 GCCGTCGCCTGAATTTCCT 60.745 57.895 0.00 0.00 0.00 3.36
2196 2341 1.706287 GCCGTCGCCTGAATTTCCTC 61.706 60.000 0.00 0.00 0.00 3.71
2197 2342 1.090052 CCGTCGCCTGAATTTCCTCC 61.090 60.000 0.00 0.00 0.00 4.30
2198 2343 1.090052 CGTCGCCTGAATTTCCTCCC 61.090 60.000 0.00 0.00 0.00 4.30
2199 2344 0.748367 GTCGCCTGAATTTCCTCCCC 60.748 60.000 0.00 0.00 0.00 4.81
2200 2345 1.204786 TCGCCTGAATTTCCTCCCCA 61.205 55.000 0.00 0.00 0.00 4.96
2201 2346 0.106519 CGCCTGAATTTCCTCCCCAT 60.107 55.000 0.00 0.00 0.00 4.00
2202 2347 1.406903 GCCTGAATTTCCTCCCCATG 58.593 55.000 0.00 0.00 0.00 3.66
2203 2348 1.342374 GCCTGAATTTCCTCCCCATGT 60.342 52.381 0.00 0.00 0.00 3.21
2204 2349 2.091885 GCCTGAATTTCCTCCCCATGTA 60.092 50.000 0.00 0.00 0.00 2.29
2205 2350 3.825328 CCTGAATTTCCTCCCCATGTAG 58.175 50.000 0.00 0.00 0.00 2.74
2206 2351 3.217626 CTGAATTTCCTCCCCATGTAGC 58.782 50.000 0.00 0.00 0.00 3.58
2207 2352 2.091885 TGAATTTCCTCCCCATGTAGCC 60.092 50.000 0.00 0.00 0.00 3.93
2208 2353 1.607225 ATTTCCTCCCCATGTAGCCA 58.393 50.000 0.00 0.00 0.00 4.75
2209 2354 1.607225 TTTCCTCCCCATGTAGCCAT 58.393 50.000 0.00 0.00 0.00 4.40
2210 2355 1.140312 TTCCTCCCCATGTAGCCATC 58.860 55.000 0.00 0.00 0.00 3.51
2211 2356 1.121407 TCCTCCCCATGTAGCCATCG 61.121 60.000 0.00 0.00 0.00 3.84
2212 2357 1.372683 CTCCCCATGTAGCCATCGG 59.627 63.158 0.00 0.00 0.00 4.18
2213 2358 2.431683 CCCCATGTAGCCATCGGG 59.568 66.667 0.00 0.00 42.22 5.14
2214 2359 3.562250 CCCATGTAGCCATCGGGA 58.438 61.111 0.00 0.00 39.70 5.14
2215 2360 1.836391 CCCATGTAGCCATCGGGAA 59.164 57.895 0.00 0.00 39.70 3.97
2216 2361 0.250467 CCCATGTAGCCATCGGGAAG 60.250 60.000 0.00 0.00 39.70 3.46
2217 2362 0.886490 CCATGTAGCCATCGGGAAGC 60.886 60.000 0.00 0.00 35.59 3.86
2218 2363 0.886490 CATGTAGCCATCGGGAAGCC 60.886 60.000 0.00 0.00 35.59 4.35
2219 2364 2.056906 ATGTAGCCATCGGGAAGCCC 62.057 60.000 0.00 0.00 41.09 5.19
2220 2365 2.366301 TAGCCATCGGGAAGCCCA 60.366 61.111 3.03 0.00 45.83 5.36
2221 2366 1.770110 TAGCCATCGGGAAGCCCAT 60.770 57.895 3.03 0.00 45.83 4.00
2222 2367 1.768684 TAGCCATCGGGAAGCCCATC 61.769 60.000 3.03 0.00 45.83 3.51
2223 2368 3.125376 GCCATCGGGAAGCCCATCT 62.125 63.158 3.03 0.00 45.83 2.90
2224 2369 1.072159 CCATCGGGAAGCCCATCTC 59.928 63.158 3.03 0.00 45.83 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.065102 GACATCGACGCTAGGCTACAA 59.935 52.381 0.00 0.00 0.00 2.41
64 66 0.387565 GCCACCAAACATGGTCGTTT 59.612 50.000 0.00 0.00 40.85 3.60
77 79 2.113774 CAAGCTGGACTGCCACCA 59.886 61.111 0.00 0.00 39.92 4.17
129 132 1.093159 CAACAAGGGAGAGCATGCTC 58.907 55.000 35.57 35.57 43.03 4.26
139 142 0.038166 GGATGGAGCACAACAAGGGA 59.962 55.000 0.00 0.00 0.00 4.20
140 143 0.967380 GGGATGGAGCACAACAAGGG 60.967 60.000 0.00 0.00 0.00 3.95
143 146 3.355378 CAATAGGGATGGAGCACAACAA 58.645 45.455 0.00 0.00 0.00 2.83
145 148 2.092429 TCCAATAGGGATGGAGCACAAC 60.092 50.000 0.00 0.00 41.98 3.32
146 149 2.204463 TCCAATAGGGATGGAGCACAA 58.796 47.619 0.00 0.00 41.98 3.33
147 150 1.891933 TCCAATAGGGATGGAGCACA 58.108 50.000 0.00 0.00 41.98 4.57
185 193 0.244721 CAGTGCCGTGATCTCAGTCA 59.755 55.000 0.00 0.00 0.00 3.41
203 211 2.436109 GGACAAGCTTCTGGGGCA 59.564 61.111 0.00 0.00 0.00 5.36
209 217 0.693049 ATTGACGGGGACAAGCTTCT 59.307 50.000 0.00 0.00 0.00 2.85
212 220 0.036010 CTCATTGACGGGGACAAGCT 60.036 55.000 0.00 0.00 0.00 3.74
227 235 4.158025 CCCACAACTTCTACGTCTACTCAT 59.842 45.833 0.00 0.00 0.00 2.90
228 236 3.504906 CCCACAACTTCTACGTCTACTCA 59.495 47.826 0.00 0.00 0.00 3.41
263 272 3.009473 ACATACATGGCAACCTCTCAACT 59.991 43.478 0.00 0.00 0.00 3.16
276 285 5.596836 AAGGCACCAAATAACATACATGG 57.403 39.130 0.00 0.00 37.19 3.66
335 344 2.032860 CTTCCCATCTCGCCGGTGAT 62.033 60.000 19.93 9.47 0.00 3.06
338 347 2.363795 TCTTCCCATCTCGCCGGT 60.364 61.111 1.90 0.00 0.00 5.28
357 366 3.945921 GGGCCTAGAAAAACCATAGTCAC 59.054 47.826 0.84 0.00 0.00 3.67
394 403 6.372103 GATGTCATCATTTCCAAATTTTGGCA 59.628 34.615 21.17 9.74 41.45 4.92
397 406 7.333423 AGCAGATGTCATCATTTCCAAATTTTG 59.667 33.333 15.20 1.99 34.06 2.44
398 407 7.391620 AGCAGATGTCATCATTTCCAAATTTT 58.608 30.769 15.20 0.00 34.06 1.82
402 411 5.988310 AAGCAGATGTCATCATTTCCAAA 57.012 34.783 15.20 0.00 34.06 3.28
410 419 4.569564 CGAATCTCAAAGCAGATGTCATCA 59.430 41.667 15.20 0.00 33.13 3.07
417 426 2.932614 CGAACCGAATCTCAAAGCAGAT 59.067 45.455 0.00 0.00 34.34 2.90
443 452 4.544689 CTCCTCCGCTCGCGACAG 62.545 72.222 13.51 1.12 42.83 3.51
470 479 1.301087 CAGGTCGTACGTGCCCAAA 60.301 57.895 21.46 0.00 0.00 3.28
475 484 0.039256 TACAACCAGGTCGTACGTGC 60.039 55.000 16.05 9.44 33.03 5.34
506 515 2.024414 GCAACAAGTAGCAATAGGGGG 58.976 52.381 0.00 0.00 0.00 5.40
507 516 2.024414 GGCAACAAGTAGCAATAGGGG 58.976 52.381 0.00 0.00 0.00 4.79
508 517 3.004752 AGGCAACAAGTAGCAATAGGG 57.995 47.619 0.00 0.00 41.41 3.53
513 522 2.356665 TCCAAGGCAACAAGTAGCAA 57.643 45.000 0.00 0.00 41.41 3.91
517 526 6.889177 TGATCATATTTCCAAGGCAACAAGTA 59.111 34.615 0.00 0.00 41.41 2.24
519 528 6.211587 TGATCATATTTCCAAGGCAACAAG 57.788 37.500 0.00 0.00 41.41 3.16
520 529 6.795144 ATGATCATATTTCCAAGGCAACAA 57.205 33.333 6.36 0.00 41.41 2.83
569 578 3.601443 TTTTTGTGTGTGGGGAAACAG 57.399 42.857 0.00 0.00 0.00 3.16
629 638 6.086011 TGGGGTTGATACAATTTCCTACAT 57.914 37.500 0.00 0.00 0.00 2.29
632 641 4.017958 TGCTGGGGTTGATACAATTTCCTA 60.018 41.667 0.00 0.00 0.00 2.94
661 670 8.448615 GCAACATAGTTTCGTACTATTTCCTTT 58.551 33.333 9.29 0.00 45.73 3.11
662 671 7.065443 GGCAACATAGTTTCGTACTATTTCCTT 59.935 37.037 9.29 0.22 45.73 3.36
663 672 6.537660 GGCAACATAGTTTCGTACTATTTCCT 59.462 38.462 9.29 0.00 45.73 3.36
664 673 6.509039 CGGCAACATAGTTTCGTACTATTTCC 60.509 42.308 9.29 7.82 45.73 3.13
665 674 6.254157 TCGGCAACATAGTTTCGTACTATTTC 59.746 38.462 9.29 2.25 45.73 2.17
666 675 6.035327 GTCGGCAACATAGTTTCGTACTATTT 59.965 38.462 9.29 2.99 45.73 1.40
667 676 5.517770 GTCGGCAACATAGTTTCGTACTATT 59.482 40.000 9.29 0.00 45.73 1.73
669 678 4.156556 AGTCGGCAACATAGTTTCGTACTA 59.843 41.667 0.00 3.35 43.29 1.82
670 679 3.057033 AGTCGGCAACATAGTTTCGTACT 60.057 43.478 0.00 0.00 41.04 2.73
671 680 3.248266 AGTCGGCAACATAGTTTCGTAC 58.752 45.455 0.00 0.00 0.00 3.67
672 681 3.581024 AGTCGGCAACATAGTTTCGTA 57.419 42.857 0.00 0.00 0.00 3.43
673 682 2.450609 AGTCGGCAACATAGTTTCGT 57.549 45.000 0.00 0.00 0.00 3.85
674 683 2.993899 AGAAGTCGGCAACATAGTTTCG 59.006 45.455 0.00 0.00 0.00 3.46
675 684 4.691216 AGAAGAAGTCGGCAACATAGTTTC 59.309 41.667 0.00 0.00 0.00 2.78
676 685 4.642429 AGAAGAAGTCGGCAACATAGTTT 58.358 39.130 0.00 0.00 0.00 2.66
677 686 4.021016 AGAGAAGAAGTCGGCAACATAGTT 60.021 41.667 0.00 0.00 0.00 2.24
678 687 3.511934 AGAGAAGAAGTCGGCAACATAGT 59.488 43.478 0.00 0.00 0.00 2.12
679 688 4.116747 AGAGAAGAAGTCGGCAACATAG 57.883 45.455 0.00 0.00 0.00 2.23
695 704 3.131396 GCCAGTCGACAAGAAAAGAGAA 58.869 45.455 19.50 0.00 0.00 2.87
696 705 2.548067 GGCCAGTCGACAAGAAAAGAGA 60.548 50.000 19.50 0.00 0.00 3.10
697 706 1.801178 GGCCAGTCGACAAGAAAAGAG 59.199 52.381 19.50 0.00 0.00 2.85
698 707 1.140052 TGGCCAGTCGACAAGAAAAGA 59.860 47.619 19.50 0.00 0.00 2.52
699 708 1.593196 TGGCCAGTCGACAAGAAAAG 58.407 50.000 19.50 0.00 0.00 2.27
700 709 1.673920 GTTGGCCAGTCGACAAGAAAA 59.326 47.619 19.50 3.63 0.00 2.29
701 710 1.134220 AGTTGGCCAGTCGACAAGAAA 60.134 47.619 19.50 2.50 0.00 2.52
702 711 0.468226 AGTTGGCCAGTCGACAAGAA 59.532 50.000 19.50 0.00 0.00 2.52
706 715 1.069090 GTGAGTTGGCCAGTCGACA 59.931 57.895 19.50 7.12 0.00 4.35
718 727 1.285078 GGGCCTAATTGGAGGTGAGTT 59.715 52.381 0.84 0.00 39.02 3.01
758 767 0.036952 AGCAACATGACGTCTCCTGG 60.037 55.000 17.92 5.00 0.00 4.45
778 840 2.952978 GAGACGGATAGACATGGTGACT 59.047 50.000 0.00 0.00 0.00 3.41
803 874 4.147322 GTGATGTCGTTGGCGCCG 62.147 66.667 23.90 10.43 38.14 6.46
804 875 2.513065 CTTGTGATGTCGTTGGCGCC 62.513 60.000 22.73 22.73 38.14 6.53
869 953 4.560743 TGGCTGTTGCGCTGGTGA 62.561 61.111 9.73 0.00 40.82 4.02
880 964 1.228245 AATGGCGTTGAGTGGCTGT 60.228 52.632 0.00 0.00 0.00 4.40
888 979 0.672401 GGAAGTCGGAATGGCGTTGA 60.672 55.000 0.00 0.00 0.00 3.18
958 1052 2.712539 CAACTCACCGCGTTTGCA 59.287 55.556 4.92 0.00 42.97 4.08
967 1061 0.667792 GAGACGCTGACCAACTCACC 60.668 60.000 0.00 0.00 0.00 4.02
969 1063 0.315251 CTGAGACGCTGACCAACTCA 59.685 55.000 0.00 0.00 36.42 3.41
1212 1306 4.307443 CTGAATATCTCAGTACACGGCA 57.693 45.455 0.00 0.00 45.76 5.69
1299 1398 3.527533 TCGATGCTACAACCAACATACC 58.472 45.455 0.00 0.00 0.00 2.73
1331 1455 7.039882 GGTGCTTGCAGAAATTACTACTAGTA 58.960 38.462 1.89 1.89 0.00 1.82
1334 1463 5.800296 TGGTGCTTGCAGAAATTACTACTA 58.200 37.500 0.00 0.00 0.00 1.82
1357 1486 3.446442 ACAATCCCAACAGAATCAGCT 57.554 42.857 0.00 0.00 0.00 4.24
1369 1498 2.270352 AAACAGAGCGAACAATCCCA 57.730 45.000 0.00 0.00 0.00 4.37
1454 1599 1.268079 GTTTGCTTCTGGCCAGTTCTC 59.732 52.381 31.58 18.75 40.92 2.87
1491 1636 4.195225 TGTATACGTGAATGCACCTTCA 57.805 40.909 0.00 0.00 42.09 3.02
1544 1689 4.732285 AGTTAATCACGACACTTGCTTG 57.268 40.909 0.00 0.00 0.00 4.01
1622 1767 1.657594 CTGACTCAGCAACGCACATAG 59.342 52.381 0.00 0.00 0.00 2.23
1821 1966 1.432514 CCTTCACCATGTGAGACACG 58.567 55.000 0.00 0.00 43.69 4.49
1828 1973 4.278170 TCAACTTTTAGCCTTCACCATGTG 59.722 41.667 0.00 0.00 34.45 3.21
1832 1977 3.882888 CAGTCAACTTTTAGCCTTCACCA 59.117 43.478 0.00 0.00 0.00 4.17
1846 1991 1.625818 GAGACCCATGGACAGTCAACT 59.374 52.381 15.22 0.00 32.82 3.16
1854 1999 0.618968 AGTGGAGGAGACCCATGGAC 60.619 60.000 15.22 7.07 35.91 4.02
1883 2028 1.561643 TTGGGGAGTGTTTGTGCAAA 58.438 45.000 0.00 0.00 0.00 3.68
1884 2029 1.686052 GATTGGGGAGTGTTTGTGCAA 59.314 47.619 0.00 0.00 0.00 4.08
1885 2030 1.327303 GATTGGGGAGTGTTTGTGCA 58.673 50.000 0.00 0.00 0.00 4.57
1886 2031 0.240945 CGATTGGGGAGTGTTTGTGC 59.759 55.000 0.00 0.00 0.00 4.57
1887 2032 1.604604 ACGATTGGGGAGTGTTTGTG 58.395 50.000 0.00 0.00 0.00 3.33
1888 2033 2.358322 AACGATTGGGGAGTGTTTGT 57.642 45.000 0.00 0.00 0.00 2.83
1889 2034 3.552068 GGAAAACGATTGGGGAGTGTTTG 60.552 47.826 0.00 0.00 33.42 2.93
1890 2035 2.626266 GGAAAACGATTGGGGAGTGTTT 59.374 45.455 0.00 0.00 34.46 2.83
1891 2036 2.158519 AGGAAAACGATTGGGGAGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
1892 2037 1.423921 AGGAAAACGATTGGGGAGTGT 59.576 47.619 0.00 0.00 0.00 3.55
1893 2038 2.200373 AGGAAAACGATTGGGGAGTG 57.800 50.000 0.00 0.00 0.00 3.51
1894 2039 2.514803 CAAGGAAAACGATTGGGGAGT 58.485 47.619 0.00 0.00 0.00 3.85
1895 2040 1.202348 GCAAGGAAAACGATTGGGGAG 59.798 52.381 0.00 0.00 0.00 4.30
1896 2041 1.253100 GCAAGGAAAACGATTGGGGA 58.747 50.000 0.00 0.00 0.00 4.81
1897 2042 0.965439 TGCAAGGAAAACGATTGGGG 59.035 50.000 0.00 0.00 0.00 4.96
1898 2043 2.810439 TTGCAAGGAAAACGATTGGG 57.190 45.000 0.00 0.00 0.00 4.12
1899 2044 3.253230 GGATTGCAAGGAAAACGATTGG 58.747 45.455 4.94 0.00 0.00 3.16
1900 2045 2.916716 CGGATTGCAAGGAAAACGATTG 59.083 45.455 4.94 0.00 0.00 2.67
1901 2046 2.817258 TCGGATTGCAAGGAAAACGATT 59.183 40.909 4.94 0.00 0.00 3.34
1902 2047 2.432444 TCGGATTGCAAGGAAAACGAT 58.568 42.857 4.94 0.00 0.00 3.73
1903 2048 1.885560 TCGGATTGCAAGGAAAACGA 58.114 45.000 4.94 5.63 0.00 3.85
1904 2049 2.697431 TTCGGATTGCAAGGAAAACG 57.303 45.000 4.94 3.27 0.00 3.60
1905 2050 4.555262 TGATTTCGGATTGCAAGGAAAAC 58.445 39.130 20.13 18.31 32.73 2.43
1906 2051 4.862902 TGATTTCGGATTGCAAGGAAAA 57.137 36.364 20.13 12.07 32.73 2.29
1907 2052 4.808558 CTTGATTTCGGATTGCAAGGAAA 58.191 39.130 19.14 19.14 34.00 3.13
1908 2053 3.367292 GCTTGATTTCGGATTGCAAGGAA 60.367 43.478 4.94 5.80 37.14 3.36
1909 2054 2.164219 GCTTGATTTCGGATTGCAAGGA 59.836 45.455 4.94 0.00 37.14 3.36
1910 2055 2.533266 GCTTGATTTCGGATTGCAAGG 58.467 47.619 4.94 0.00 37.14 3.61
1911 2056 2.165030 AGGCTTGATTTCGGATTGCAAG 59.835 45.455 4.94 0.00 39.06 4.01
1912 2057 2.094597 CAGGCTTGATTTCGGATTGCAA 60.095 45.455 0.00 0.00 0.00 4.08
1913 2058 1.473677 CAGGCTTGATTTCGGATTGCA 59.526 47.619 0.00 0.00 0.00 4.08
1914 2059 1.800286 GCAGGCTTGATTTCGGATTGC 60.800 52.381 0.00 0.00 0.00 3.56
1915 2060 1.473677 TGCAGGCTTGATTTCGGATTG 59.526 47.619 0.00 0.00 0.00 2.67
1916 2061 1.838112 TGCAGGCTTGATTTCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
1917 2062 1.474077 GTTGCAGGCTTGATTTCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
1918 2063 0.881118 GTTGCAGGCTTGATTTCGGA 59.119 50.000 0.00 0.00 0.00 4.55
1919 2064 0.109132 GGTTGCAGGCTTGATTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
1920 2065 0.883833 AGGTTGCAGGCTTGATTTCG 59.116 50.000 0.00 0.00 0.00 3.46
1921 2066 5.048434 GGATATAGGTTGCAGGCTTGATTTC 60.048 44.000 0.00 0.00 0.00 2.17
1922 2067 4.829492 GGATATAGGTTGCAGGCTTGATTT 59.171 41.667 0.00 0.00 0.00 2.17
1923 2068 4.401925 GGATATAGGTTGCAGGCTTGATT 58.598 43.478 0.00 0.00 0.00 2.57
1924 2069 3.245052 GGGATATAGGTTGCAGGCTTGAT 60.245 47.826 0.00 0.00 0.00 2.57
1925 2070 2.106511 GGGATATAGGTTGCAGGCTTGA 59.893 50.000 0.00 0.00 0.00 3.02
1926 2071 2.508526 GGGATATAGGTTGCAGGCTTG 58.491 52.381 0.00 0.00 0.00 4.01
1927 2072 1.072331 CGGGATATAGGTTGCAGGCTT 59.928 52.381 0.00 0.00 0.00 4.35
1928 2073 0.687354 CGGGATATAGGTTGCAGGCT 59.313 55.000 0.00 0.00 0.00 4.58
1929 2074 0.685097 TCGGGATATAGGTTGCAGGC 59.315 55.000 0.00 0.00 0.00 4.85
1930 2075 1.336887 CGTCGGGATATAGGTTGCAGG 60.337 57.143 0.00 0.00 0.00 4.85
1931 2076 1.336887 CCGTCGGGATATAGGTTGCAG 60.337 57.143 2.34 0.00 34.06 4.41
1932 2077 0.677288 CCGTCGGGATATAGGTTGCA 59.323 55.000 2.34 0.00 34.06 4.08
1933 2078 0.669625 GCCGTCGGGATATAGGTTGC 60.670 60.000 14.38 0.00 34.06 4.17
1934 2079 0.388134 CGCCGTCGGGATATAGGTTG 60.388 60.000 14.38 0.00 34.06 3.77
1935 2080 1.962144 CGCCGTCGGGATATAGGTT 59.038 57.895 14.38 0.00 34.06 3.50
1936 2081 3.677527 CGCCGTCGGGATATAGGT 58.322 61.111 14.38 0.00 34.06 3.08
1964 2109 4.083324 GGTGATTGTTCCGGCATATACATG 60.083 45.833 0.00 0.00 35.07 3.21
1965 2110 4.072131 GGTGATTGTTCCGGCATATACAT 58.928 43.478 0.00 0.00 0.00 2.29
1966 2111 3.118223 TGGTGATTGTTCCGGCATATACA 60.118 43.478 0.00 0.00 0.00 2.29
1967 2112 3.250040 GTGGTGATTGTTCCGGCATATAC 59.750 47.826 0.00 0.00 0.00 1.47
1968 2113 3.472652 GTGGTGATTGTTCCGGCATATA 58.527 45.455 0.00 0.00 0.00 0.86
1969 2114 2.297701 GTGGTGATTGTTCCGGCATAT 58.702 47.619 0.00 0.00 0.00 1.78
1970 2115 1.745232 GTGGTGATTGTTCCGGCATA 58.255 50.000 0.00 0.00 0.00 3.14
1971 2116 1.305219 CGTGGTGATTGTTCCGGCAT 61.305 55.000 0.00 0.00 0.00 4.40
1972 2117 1.963855 CGTGGTGATTGTTCCGGCA 60.964 57.895 0.00 0.00 0.00 5.69
1973 2118 1.024579 ATCGTGGTGATTGTTCCGGC 61.025 55.000 0.00 0.00 31.57 6.13
1974 2119 0.726827 CATCGTGGTGATTGTTCCGG 59.273 55.000 0.00 0.00 34.13 5.14
1975 2120 0.726827 CCATCGTGGTGATTGTTCCG 59.273 55.000 0.00 0.00 34.13 4.30
1976 2121 2.107950 TCCATCGTGGTGATTGTTCC 57.892 50.000 4.33 0.00 39.03 3.62
1977 2122 3.181497 CCATTCCATCGTGGTGATTGTTC 60.181 47.826 4.33 0.00 39.03 3.18
1978 2123 2.754552 CCATTCCATCGTGGTGATTGTT 59.245 45.455 4.33 0.00 39.03 2.83
1979 2124 2.368439 CCATTCCATCGTGGTGATTGT 58.632 47.619 4.33 0.00 39.03 2.71
1980 2125 1.677576 CCCATTCCATCGTGGTGATTG 59.322 52.381 4.33 0.00 39.03 2.67
1981 2126 1.284785 ACCCATTCCATCGTGGTGATT 59.715 47.619 4.33 0.00 39.03 2.57
1982 2127 0.918983 ACCCATTCCATCGTGGTGAT 59.081 50.000 4.33 0.00 39.03 3.06
1983 2128 0.251916 GACCCATTCCATCGTGGTGA 59.748 55.000 4.33 0.00 39.03 4.02
1984 2129 0.253044 AGACCCATTCCATCGTGGTG 59.747 55.000 4.33 0.00 39.03 4.17
1985 2130 0.253044 CAGACCCATTCCATCGTGGT 59.747 55.000 4.33 0.00 39.03 4.16
1986 2131 1.097547 GCAGACCCATTCCATCGTGG 61.098 60.000 0.00 0.00 39.43 4.94
1987 2132 1.097547 GGCAGACCCATTCCATCGTG 61.098 60.000 0.00 0.00 0.00 4.35
1988 2133 1.224592 GGCAGACCCATTCCATCGT 59.775 57.895 0.00 0.00 0.00 3.73
1989 2134 4.147701 GGCAGACCCATTCCATCG 57.852 61.111 0.00 0.00 0.00 3.84
1999 2144 2.108362 CGATTACCCGGGCAGACC 59.892 66.667 24.08 5.32 0.00 3.85
2000 2145 2.588034 GCGATTACCCGGGCAGAC 60.588 66.667 24.08 9.45 0.00 3.51
2001 2146 3.857038 GGCGATTACCCGGGCAGA 61.857 66.667 24.08 7.01 0.00 4.26
2019 2164 2.894240 TATTCCTTCGTGGCCGTCGC 62.894 60.000 14.04 0.00 35.26 5.19
2020 2165 1.140161 TATTCCTTCGTGGCCGTCG 59.860 57.895 12.91 12.91 35.26 5.12
2021 2166 0.108520 TGTATTCCTTCGTGGCCGTC 60.109 55.000 0.00 0.00 35.26 4.79
2022 2167 0.539986 ATGTATTCCTTCGTGGCCGT 59.460 50.000 0.00 0.00 35.26 5.68
2023 2168 1.202533 AGATGTATTCCTTCGTGGCCG 60.203 52.381 0.00 0.00 35.26 6.13
2024 2169 2.484889 GAGATGTATTCCTTCGTGGCC 58.515 52.381 0.00 0.00 35.26 5.36
2025 2170 2.484889 GGAGATGTATTCCTTCGTGGC 58.515 52.381 0.00 0.00 35.26 5.01
2026 2171 2.700897 AGGGAGATGTATTCCTTCGTGG 59.299 50.000 0.00 0.00 35.01 4.94
2027 2172 4.585162 AGTAGGGAGATGTATTCCTTCGTG 59.415 45.833 0.00 0.00 35.01 4.35
2028 2173 4.585162 CAGTAGGGAGATGTATTCCTTCGT 59.415 45.833 0.00 0.00 35.01 3.85
2029 2174 4.559704 GCAGTAGGGAGATGTATTCCTTCG 60.560 50.000 0.00 0.00 35.01 3.79
2030 2175 4.262678 GGCAGTAGGGAGATGTATTCCTTC 60.263 50.000 0.00 0.00 35.01 3.46
2031 2176 3.648545 GGCAGTAGGGAGATGTATTCCTT 59.351 47.826 0.00 0.00 35.01 3.36
2032 2177 3.243724 GGCAGTAGGGAGATGTATTCCT 58.756 50.000 0.00 0.00 35.01 3.36
2033 2178 2.028930 CGGCAGTAGGGAGATGTATTCC 60.029 54.545 0.00 0.00 0.00 3.01
2034 2179 2.891580 TCGGCAGTAGGGAGATGTATTC 59.108 50.000 0.00 0.00 0.00 1.75
2035 2180 2.958818 TCGGCAGTAGGGAGATGTATT 58.041 47.619 0.00 0.00 0.00 1.89
2036 2181 2.677542 TCGGCAGTAGGGAGATGTAT 57.322 50.000 0.00 0.00 0.00 2.29
2037 2182 2.677542 ATCGGCAGTAGGGAGATGTA 57.322 50.000 0.00 0.00 0.00 2.29
2038 2183 2.158445 AGTATCGGCAGTAGGGAGATGT 60.158 50.000 0.00 0.00 0.00 3.06
2039 2184 2.230025 CAGTATCGGCAGTAGGGAGATG 59.770 54.545 0.00 0.00 0.00 2.90
2040 2185 2.520069 CAGTATCGGCAGTAGGGAGAT 58.480 52.381 0.00 0.00 0.00 2.75
2041 2186 1.982660 CAGTATCGGCAGTAGGGAGA 58.017 55.000 0.00 0.00 0.00 3.71
2042 2187 0.315568 GCAGTATCGGCAGTAGGGAG 59.684 60.000 0.00 0.00 0.00 4.30
2043 2188 1.113517 GGCAGTATCGGCAGTAGGGA 61.114 60.000 0.00 0.00 0.00 4.20
2044 2189 1.367840 GGCAGTATCGGCAGTAGGG 59.632 63.158 0.00 0.00 0.00 3.53
2045 2190 1.007271 CGGCAGTATCGGCAGTAGG 60.007 63.158 0.00 0.00 0.00 3.18
2046 2191 0.598562 ATCGGCAGTATCGGCAGTAG 59.401 55.000 0.00 0.00 0.00 2.57
2047 2192 0.596577 GATCGGCAGTATCGGCAGTA 59.403 55.000 0.00 0.00 0.00 2.74
2048 2193 1.364171 GATCGGCAGTATCGGCAGT 59.636 57.895 0.00 0.00 0.00 4.40
2049 2194 1.373497 GGATCGGCAGTATCGGCAG 60.373 63.158 0.00 0.00 0.00 4.85
2050 2195 2.734591 GGATCGGCAGTATCGGCA 59.265 61.111 0.00 0.00 0.00 5.69
2051 2196 2.430921 CGGATCGGCAGTATCGGC 60.431 66.667 0.00 0.00 0.00 5.54
2052 2197 2.430921 GCGGATCGGCAGTATCGG 60.431 66.667 19.39 0.00 0.00 4.18
2053 2198 2.335011 TGCGGATCGGCAGTATCG 59.665 61.111 22.62 1.62 38.17 2.92
2060 2205 4.545706 TCCACCATGCGGATCGGC 62.546 66.667 17.70 17.70 35.59 5.54
2061 2206 1.889105 CTTCCACCATGCGGATCGG 60.889 63.158 3.17 4.32 35.59 4.18
2062 2207 1.889105 CCTTCCACCATGCGGATCG 60.889 63.158 3.17 0.00 35.59 3.69
2063 2208 1.526917 CCCTTCCACCATGCGGATC 60.527 63.158 3.17 0.00 35.59 3.36
2064 2209 2.270874 GACCCTTCCACCATGCGGAT 62.271 60.000 3.17 0.00 35.59 4.18
2065 2210 2.933287 ACCCTTCCACCATGCGGA 60.933 61.111 0.00 0.00 35.59 5.54
2066 2211 2.438434 GACCCTTCCACCATGCGG 60.438 66.667 0.00 0.00 38.77 5.69
2067 2212 2.438434 GGACCCTTCCACCATGCG 60.438 66.667 0.00 0.00 42.30 4.73
2068 2213 1.077429 GAGGACCCTTCCACCATGC 60.077 63.158 0.00 0.00 45.72 4.06
2086 2231 3.272334 GCAGCGTATCCGGCAAGG 61.272 66.667 0.00 0.00 42.97 3.61
2087 2232 2.106074 TTGCAGCGTATCCGGCAAG 61.106 57.895 0.00 0.00 36.68 4.01
2088 2233 2.046796 TTGCAGCGTATCCGGCAA 60.047 55.556 0.00 0.00 38.39 4.52
2089 2234 2.817834 GTTGCAGCGTATCCGGCA 60.818 61.111 0.00 0.00 30.94 5.69
2090 2235 3.573491 GGTTGCAGCGTATCCGGC 61.573 66.667 0.00 0.00 33.68 6.13
2091 2236 2.125310 TGGTTGCAGCGTATCCGG 60.125 61.111 0.00 0.00 33.68 5.14
2092 2237 1.421410 GACTGGTTGCAGCGTATCCG 61.421 60.000 0.00 0.00 37.07 4.18
2093 2238 0.391130 TGACTGGTTGCAGCGTATCC 60.391 55.000 0.00 0.00 0.00 2.59
2094 2239 0.721718 GTGACTGGTTGCAGCGTATC 59.278 55.000 0.00 0.00 0.00 2.24
2095 2240 0.673644 GGTGACTGGTTGCAGCGTAT 60.674 55.000 0.00 0.00 0.00 3.06
2096 2241 1.301401 GGTGACTGGTTGCAGCGTA 60.301 57.895 0.00 0.00 0.00 4.42
2097 2242 2.591715 GGTGACTGGTTGCAGCGT 60.592 61.111 0.00 0.00 0.00 5.07
2098 2243 1.968017 ATGGTGACTGGTTGCAGCG 60.968 57.895 0.00 0.00 35.41 5.18
2099 2244 1.582968 CATGGTGACTGGTTGCAGC 59.417 57.895 0.00 0.00 0.00 5.25
2100 2245 1.870055 GCCATGGTGACTGGTTGCAG 61.870 60.000 14.67 0.00 36.10 4.41
2101 2246 1.902918 GCCATGGTGACTGGTTGCA 60.903 57.895 14.67 0.00 36.10 4.08
2102 2247 2.964978 GCCATGGTGACTGGTTGC 59.035 61.111 14.67 0.00 36.10 4.17
2103 2248 2.334946 CCGCCATGGTGACTGGTTG 61.335 63.158 27.12 3.89 36.10 3.77
2104 2249 2.034066 CCGCCATGGTGACTGGTT 59.966 61.111 27.12 0.00 36.10 3.67
2105 2250 4.033776 CCCGCCATGGTGACTGGT 62.034 66.667 27.12 0.00 36.10 4.00
2106 2251 3.567579 AACCCGCCATGGTGACTGG 62.568 63.158 27.12 20.50 39.05 4.00
2107 2252 2.034066 AACCCGCCATGGTGACTG 59.966 61.111 27.12 16.04 39.05 3.51
2108 2253 2.224159 AGAACCCGCCATGGTGACT 61.224 57.895 27.12 15.79 39.05 3.41
2109 2254 2.040544 CAGAACCCGCCATGGTGAC 61.041 63.158 27.12 13.92 39.05 3.67
2110 2255 1.561769 ATCAGAACCCGCCATGGTGA 61.562 55.000 27.12 13.88 39.05 4.02
2111 2256 1.077501 ATCAGAACCCGCCATGGTG 60.078 57.895 18.88 18.88 39.05 4.17
2112 2257 1.077501 CATCAGAACCCGCCATGGT 60.078 57.895 14.67 0.00 41.55 3.55
2113 2258 0.680921 AACATCAGAACCCGCCATGG 60.681 55.000 7.63 7.63 37.55 3.66
2114 2259 0.734889 GAACATCAGAACCCGCCATG 59.265 55.000 0.00 0.00 0.00 3.66
2115 2260 0.744414 CGAACATCAGAACCCGCCAT 60.744 55.000 0.00 0.00 0.00 4.40
2116 2261 1.375396 CGAACATCAGAACCCGCCA 60.375 57.895 0.00 0.00 0.00 5.69
2117 2262 2.106683 CCGAACATCAGAACCCGCC 61.107 63.158 0.00 0.00 0.00 6.13
2118 2263 2.106683 CCCGAACATCAGAACCCGC 61.107 63.158 0.00 0.00 0.00 6.13
2119 2264 0.739813 GTCCCGAACATCAGAACCCG 60.740 60.000 0.00 0.00 0.00 5.28
2120 2265 0.739813 CGTCCCGAACATCAGAACCC 60.740 60.000 0.00 0.00 0.00 4.11
2121 2266 0.245539 TCGTCCCGAACATCAGAACC 59.754 55.000 0.00 0.00 31.06 3.62
2122 2267 1.927174 CATCGTCCCGAACATCAGAAC 59.073 52.381 0.00 0.00 39.99 3.01
2123 2268 1.822371 TCATCGTCCCGAACATCAGAA 59.178 47.619 0.00 0.00 39.99 3.02
2124 2269 1.470051 TCATCGTCCCGAACATCAGA 58.530 50.000 0.00 0.00 39.99 3.27
2125 2270 2.293677 TTCATCGTCCCGAACATCAG 57.706 50.000 0.00 0.00 39.99 2.90
2126 2271 2.430694 AGATTCATCGTCCCGAACATCA 59.569 45.455 0.00 0.00 39.99 3.07
2127 2272 2.797156 CAGATTCATCGTCCCGAACATC 59.203 50.000 0.00 0.00 39.99 3.06
2128 2273 2.826428 CAGATTCATCGTCCCGAACAT 58.174 47.619 0.00 0.00 39.99 2.71
2129 2274 1.739035 GCAGATTCATCGTCCCGAACA 60.739 52.381 0.00 0.00 39.99 3.18
2130 2275 0.931005 GCAGATTCATCGTCCCGAAC 59.069 55.000 0.00 0.00 39.99 3.95
2131 2276 0.534873 TGCAGATTCATCGTCCCGAA 59.465 50.000 0.00 0.00 39.99 4.30
2132 2277 0.752658 ATGCAGATTCATCGTCCCGA 59.247 50.000 0.00 0.00 41.13 5.14
2133 2278 1.143305 GATGCAGATTCATCGTCCCG 58.857 55.000 0.00 0.00 34.26 5.14
2139 2284 5.441543 CATCAAAGTCGATGCAGATTCATC 58.558 41.667 0.00 0.00 36.64 2.92
2140 2285 4.275196 CCATCAAAGTCGATGCAGATTCAT 59.725 41.667 0.00 0.00 41.27 2.57
2141 2286 3.624410 CCATCAAAGTCGATGCAGATTCA 59.376 43.478 0.00 0.00 41.27 2.57
2142 2287 3.547613 GCCATCAAAGTCGATGCAGATTC 60.548 47.826 0.00 0.00 41.27 2.52
2143 2288 2.357009 GCCATCAAAGTCGATGCAGATT 59.643 45.455 0.00 0.00 41.27 2.40
2144 2289 1.945394 GCCATCAAAGTCGATGCAGAT 59.055 47.619 0.00 0.00 41.27 2.90
2145 2290 1.065926 AGCCATCAAAGTCGATGCAGA 60.066 47.619 0.00 0.00 41.27 4.26
2146 2291 1.063616 CAGCCATCAAAGTCGATGCAG 59.936 52.381 0.00 0.00 41.27 4.41
2147 2292 1.089112 CAGCCATCAAAGTCGATGCA 58.911 50.000 0.00 0.00 41.27 3.96
2148 2293 0.379669 CCAGCCATCAAAGTCGATGC 59.620 55.000 0.00 0.00 41.27 3.91
2149 2294 2.028420 TCCAGCCATCAAAGTCGATG 57.972 50.000 0.00 0.00 42.09 3.84
2150 2295 2.359900 GTTCCAGCCATCAAAGTCGAT 58.640 47.619 0.00 0.00 0.00 3.59
2151 2296 1.610624 GGTTCCAGCCATCAAAGTCGA 60.611 52.381 0.00 0.00 0.00 4.20
2152 2297 0.804989 GGTTCCAGCCATCAAAGTCG 59.195 55.000 0.00 0.00 0.00 4.18
2153 2298 1.815003 CAGGTTCCAGCCATCAAAGTC 59.185 52.381 0.00 0.00 0.00 3.01
2154 2299 1.915141 CAGGTTCCAGCCATCAAAGT 58.085 50.000 0.00 0.00 0.00 2.66
2155 2300 0.529378 GCAGGTTCCAGCCATCAAAG 59.471 55.000 0.00 0.00 0.00 2.77
2156 2301 0.112995 AGCAGGTTCCAGCCATCAAA 59.887 50.000 2.69 0.00 0.00 2.69
2157 2302 0.112995 AAGCAGGTTCCAGCCATCAA 59.887 50.000 2.69 0.00 0.00 2.57
2158 2303 0.609957 CAAGCAGGTTCCAGCCATCA 60.610 55.000 2.69 0.00 0.00 3.07
2159 2304 1.941999 GCAAGCAGGTTCCAGCCATC 61.942 60.000 2.69 0.00 0.00 3.51
2160 2305 1.980772 GCAAGCAGGTTCCAGCCAT 60.981 57.895 2.69 0.00 0.00 4.40
2161 2306 2.598394 GCAAGCAGGTTCCAGCCA 60.598 61.111 2.69 0.00 0.00 4.75
2162 2307 3.376918 GGCAAGCAGGTTCCAGCC 61.377 66.667 2.69 0.00 34.71 4.85
2163 2308 3.741476 CGGCAAGCAGGTTCCAGC 61.741 66.667 0.00 0.00 0.00 4.85
2164 2309 2.281761 ACGGCAAGCAGGTTCCAG 60.282 61.111 0.00 0.00 0.00 3.86
2165 2310 2.281484 GACGGCAAGCAGGTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
2166 2311 3.423154 CGACGGCAAGCAGGTTCC 61.423 66.667 0.00 0.00 0.00 3.62
2167 2312 4.090057 GCGACGGCAAGCAGGTTC 62.090 66.667 0.00 0.00 39.62 3.62
2172 2317 3.899981 ATTCAGGCGACGGCAAGCA 62.900 57.895 24.23 6.43 42.47 3.91
2173 2318 2.200170 AAATTCAGGCGACGGCAAGC 62.200 55.000 24.23 0.00 42.47 4.01
2174 2319 0.179189 GAAATTCAGGCGACGGCAAG 60.179 55.000 24.23 15.24 42.47 4.01
2175 2320 1.582610 GGAAATTCAGGCGACGGCAA 61.583 55.000 24.23 10.42 42.47 4.52
2176 2321 2.038269 GGAAATTCAGGCGACGGCA 61.038 57.895 24.23 2.93 42.47 5.69
2177 2322 1.706287 GAGGAAATTCAGGCGACGGC 61.706 60.000 14.41 14.41 38.90 5.68
2178 2323 1.090052 GGAGGAAATTCAGGCGACGG 61.090 60.000 0.00 0.00 0.00 4.79
2179 2324 1.090052 GGGAGGAAATTCAGGCGACG 61.090 60.000 0.00 0.00 0.00 5.12
2180 2325 0.748367 GGGGAGGAAATTCAGGCGAC 60.748 60.000 0.00 0.00 0.00 5.19
2181 2326 1.204786 TGGGGAGGAAATTCAGGCGA 61.205 55.000 0.00 0.00 0.00 5.54
2182 2327 0.106519 ATGGGGAGGAAATTCAGGCG 60.107 55.000 0.00 0.00 0.00 5.52
2183 2328 1.342374 ACATGGGGAGGAAATTCAGGC 60.342 52.381 0.00 0.00 0.00 4.85
2184 2329 2.834638 ACATGGGGAGGAAATTCAGG 57.165 50.000 0.00 0.00 0.00 3.86
2185 2330 3.217626 GCTACATGGGGAGGAAATTCAG 58.782 50.000 0.00 0.00 0.00 3.02
2186 2331 2.091885 GGCTACATGGGGAGGAAATTCA 60.092 50.000 0.00 0.00 0.00 2.57
2187 2332 2.091885 TGGCTACATGGGGAGGAAATTC 60.092 50.000 0.00 0.00 0.00 2.17
2188 2333 1.929494 TGGCTACATGGGGAGGAAATT 59.071 47.619 0.00 0.00 0.00 1.82
2189 2334 1.607225 TGGCTACATGGGGAGGAAAT 58.393 50.000 0.00 0.00 0.00 2.17
2190 2335 1.494721 GATGGCTACATGGGGAGGAAA 59.505 52.381 0.00 0.00 37.47 3.13
2191 2336 1.140312 GATGGCTACATGGGGAGGAA 58.860 55.000 0.00 0.00 37.47 3.36
2192 2337 1.121407 CGATGGCTACATGGGGAGGA 61.121 60.000 0.00 0.00 37.47 3.71
2193 2338 1.372683 CGATGGCTACATGGGGAGG 59.627 63.158 0.00 0.00 37.47 4.30
2194 2339 1.372683 CCGATGGCTACATGGGGAG 59.627 63.158 0.00 0.00 45.97 4.30
2195 2340 3.562250 CCGATGGCTACATGGGGA 58.438 61.111 0.00 0.00 45.97 4.81
2198 2343 0.886490 GCTTCCCGATGGCTACATGG 60.886 60.000 0.00 0.00 37.47 3.66
2199 2344 0.886490 GGCTTCCCGATGGCTACATG 60.886 60.000 0.00 0.00 37.47 3.21
2200 2345 1.451936 GGCTTCCCGATGGCTACAT 59.548 57.895 0.00 0.00 40.85 2.29
2201 2346 2.742116 GGGCTTCCCGATGGCTACA 61.742 63.158 4.51 0.00 32.13 2.74
2202 2347 2.111251 GGGCTTCCCGATGGCTAC 59.889 66.667 4.51 0.00 32.13 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.