>input_sequence_86531
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-----------------------------------------------------ATGGGGATCCACCTCCTGGCGTTCGCC
TTCGTGCAGGTGTTCCAGGCCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTTTCCCGCCACCTCCCCCAGCTCTG
CGCCGTCGTCTCCGGCGAGGTCGCCGCCCACGTCGCCTGGCTGCGCCGCGCCCACGCGAGGCGCCGCGACGACGACGAGG
AGGGCCGCCGCCAGGGGCTGCTCTATGCCGTGTACTGA------------------------------------------
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>chr2D_1_TraesCS2D01G514500
TTGTAGCCTAGCGTCGATGTCCGCCGGTGCAAC-TCCCCAGCTCGGCGCGCTCCATCCCCGCCAAAAACGACCATGTTTG
GTGGCAGTCCAGCTTGCGTCCCCGCTCTA-CTAGTTGCCACATCTGCCCACGAGCATGCTCTCCCTTGTT-----GTGCT
CCATCCCTATTGGAAACGACCACGTTCATCGATGACTGAGATCACGGCACTGCCCCAGAAGCTTGTCCCCGTCAATGAGT
AGACGTAGAAGTTGTGGG-AGAGGAGGTTCCAGTTGAGAGGTTGCCATGTATGTTATTTGGTGCCTTTTGCTGCCGTCGT
CGGGCCATCCCATATTTTGTACCATCACCGGCGAGATGGGAAGAGGTGACTATGGTTTTTCTAGGCCCCGTGAATTAGGG
TGTGCCAAAATTTGGAAATGATGACATCTGCTTTGAGATTCGGTTCGCCAGCTGTCGCGAGCGGAGGAGGGTCTCCCGTT
TGGGCACGTACGACCTGGTTGTATAGGATTTTTTCCCCCTATTGCTACTTGTTGCCTTGGAAATATGATCATTTCATATA
CTAGTCTAAATATGTTACTGTTTCCCCACACACAAAAAATGTTGCTGTTGGAAACAGCATGTAACTTTCTTTTTTGCATG
TAGGAAATTGTATCAACCCCAGCAAAAAAAAAGGAAATAGTACGAAACTATGTTGCCGACTTCTTCTCTTTTCTTGTCGA
CTGGCCAACTCACCTCCAATTAGGCCCGGCCGACCCGCCAGCAGTACCAG------------------------------
-----------------------GAGACGTCATGTTGCTAGTCACCATGTCTAT---------CCGTCTCAGCCGGCGCC
AACGACATCAC-AAGGTCGTTTCCGGGGAAGGCCGCAACC------------TCCCCCGCAAAAGCATAACCTCACCAGC
GCAACAGC-------CACTCAACGCCATTCCGACTTCCGAACTAAACCAACACATTTGTCGCTCACCCTCGCCGTCGCCG
CAGC---ACCGTGCAAACGCGGTGAGTTGGTCAGCGTCTCAGGGCTCTCGGCGATGGGGATCCACCTCCTGGCGTTCGCC
TTCGTGCAGGTGTTCCAGGCCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTTTCCCGCCACCTCCCCCAGCTCTG
CGCCGTCGTCTCCGGCGAGGTCGCCGCCCACGTCGCCTGGCTGCGCCGCGCCCACGCGAGGCGCCGCGACGACGACGAGG
AGGGCCGCCGCCAGGGGCTGCTCTATGCCGTGTACTGAGATATTCAGACCGGACAGTTTCTTCAGTTTCGATTTTTAGTC
GATTTCTTCGAGCGCTAGCTGCGGAAT-A----TGTGG---GTATGTTGGTTG----------------------TAGCA
TCGATCTGTAAATAT-----ACTAGTAGTAATTTCTGCAAGCACCAGCTGATTCTGTTGGGATTGTTCGCTCTGTTTTGC
TGCAGC----ATCTCAAA------TACAAGTGTACAGTTGTTCTTCAGGAGATTCATTTGTTTTTCCGGGC------CGA
GAACTGGCCAGAAGCAAACTTCCTTGTGAGATTATTGAAGGTGCATTCACGTATACAATGTACAGTACTTGTCATCTACT
TGTCGGTTCAAGCAAGTGTCGTGATTAACTAGAATTCAGTCAATTCGTAATAAAGAACAAGTGTTCAGTCGCGATCATAC
TAAGTACTATGTGCGTTGCTGAGTCAGCCACACCACCATGCTTAACTGGAAGCATGACAGACATTAATTTAGTCGACAGA
TCTTATGCATACTGCATAATCTGCAATTTTTATACCACCGTAACAAATATCTGAAACTACAACCGGGGTCCTCGAAACAT
TATTGCAAAATGTGCTAAGAAACTGATTCTATAGGTAAAGTACAGCGTGTCTCACATGGTGAAGGCTAAAAGTTGACTGT
CCATGGGTCTCCTCCACTATTCATAAGTTTGCACAAACACTCCCCAATCGTTTTCCTTGCAATCCGAAATCAAGCCTGCA
ACCTATATCCCGACGGCGGCCACAGCGGCATGTATATGCCGGAACAATCACCACGATGGAATGGGTCTGCCCGGGTAATC
GCCGCGACGGCCACGAAGGAATACATCTCCCTACTGCCGATACTGCCGATCCGCATGGTGGAAGGGTCCTCCTTGCCGGA
TACGCTGCAACCAGTCACCATGGCGGGTTCTGATGTTCGGGACGATGAATCTGCATCGACTTTGATGGCTGGAACCTGCT
TGCCGTCGCCTGAATTTCCTCCCCATGTAGCCATCGGGAAGCCCATCTC
>chr2B_2
-TGTAGCCCAGGGTCGATGTCAGCCGGTGCAAAATCCCCGGCTCGACGCGCTCCATCCCCGCCAACAACGACCATGTTCG
GTGGCAGTACAGCTTGCGTCTGCACTCTATCTAGTTGTCACATCTGCCCACAAGCATGCTCCTCCCTTGCTCATGGTGCT
CCATCCCTGTTGGAAACAACCACGTTCGTCGACGACTGAGCTCGCCACACCACCCCGGATGCTTGTCCCCGTCAGCGAGT
AGACGTATAATTTGTGGGCAGAGGAGGTTTCGGTTGAGAGGTTGACATGTATGTTCTTCGGTGCCTTTCACTGCTGTCGT
CGGGCCATGCCATATTTTGTACTGTCGCGGGCGAGATGGAAAGAGATGACTATGGTTTTTCTAGGGGCCGTGAATTTGGG
TGAGCGGAAAGTTCGAAACGATGACCTCTGCTTTGAGATTCAGTTCGCCAGGTGTCGCGGGCGGAGGAGGGTCTCCTGAT
TGGACACGTACGACCTGGTTGTATAGGATTTTTTTT-CCTAATGCCAAATGTTGCCTTGGAAATATGATCATTCTATATA
CTAGTCTAAATATGTTATTGTTTCCCCATA---AAAAAATGTTGCTGTTGGAAACAGCATGGAACTTTCTTTTTTGCTTG
AAGGAAATAA--------------------------------------TATGTTGCCGACTTC--------TCTAGTCGA
CTGGCCGACTCACCTCCAATTAGGCCAGGCCGACCCGCCAGCAGTCGCAG------------------------------
-----------------------GAGACGTCATGTTGCTTGTCATCATGTCTAT---------CCGTCTCAGCGCGCGCC
AACGACATTAA-AAGGTCGTTCCCGGGGAAGGCCGCAACC------------TCCCCGGCAAAAGCATAACCACACCAGC
GCAGCAGC-------CACACAACGCCATTCCGACTTCCGAACC-CGACATCACATTTGTCGCTCGCCCTCGCCGTCGCCG
CCGCGTCACCGCGCAAGCGCAGGGAGTTGCTCAGCGTCTCAGGGCTCTCGGCTATGGGGATCCACCTCCTGGCGTTCGCC
TTCGTGCAGGTGTTTCAGGCCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTGCCCCGCCACCTCCCCCAGCTCTG
CGCCGTCGTCTCCGGCGAGATCGCCGCCCACGTCGCCTGGCTGCGCCGCGCCCACGCGAGGCGCCGAGATGACGACGAGC
AAGGCCGCCGCCAGGGGCTGCTATACGCCGTGTACTGAGATATCCAGACCGGACAGTTTCTTCACTTTTGA-CGTTTAGA
TTATTTTTCGAGCGCTAGCTGCGGAAT-A----TCGATGTAGGCTTTTTTGGATTTGAATATGTATGTAAGTTACTAGCA
TCGATCTGTGAATAC--G--------AGCAAATTCTGCTAGGACCGGCTGATTCTGTCGGGATTGATGGCTTTGTTTTGC
TCCAGCTAGCATCTCAAATAGTAGTACAGGTTTACAGTTGTTCTTCAGGAGATTCATTTGTTTTCCCT-GC------CAA
GAACTGGCCAGA--------------------------------------------------------------------
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>chr2A_17
----------------ATGTCCGCCGGTGCAAC-TCCCTAGCTCGGTGTGCTCCATCCCCGCCAACAACAACCATGTTCG
GTGGCAGTCCAGCTTGCGTCCCCGCTCTATCTAGTTGCCACATCTGCCCTCCC---------------------------
---TCCCTGTCGGAAACGCCCACGTTCATCGACGACTGAGCTCGCGGCACCGCCCCGCATGCTTGTTCCTGTCAGCGAGT
AGACATGGAGGTTGTGGGCAGAGGAGGTTCCGGTTGAGAGGTCGACATGTATGTTGTTTGGTGCCTTTCGCTGCT---GT
CGGGCCATGCCATATTTTGTACCGTCGCCGGCGAGTTGGGAAGAGATGACTATGGTTTTTCTGGGCCT-GTGAATTAGGG
TGAGCTGAAAGTTGGTAACGATGACCTCTTT-------------------------------------------------
----------------------------------------------------------------------------TATA
CTAGCCTAAATATGTTGTTTTCCCCCCAAA---AAAATATGTTGCTGTTGGAAACAGTATGGAACTTTCTTTTTTGCTTG
AAGGAAATAGA--------------------------------------ATGTTGCCGACTTC--------TCTAGTCGA
CTGGCCGACTCATCTCCAACTTGGCCCGGCCGACCCACCAGCTGTAGCAGGGGCCGTCACATCCTTCCCCGACCGGTCCA
ACCCTTTGGGATAACGGCAAGTCGAGACGTCATGTTGCTCGTCACCATGCCTATCCAGCTTCCCCGTCTCAGCGCGCGC-
AACTAGAATAAGAAGGTCGTTCCCGGGGAAGGCCGCAACC------------TCCCCGGCAAAAGCATAACCACACCAGC
GCAGCAGC-------CACACAACGCCATTC----------ACC-AGCCATCACATTCTTTT---G--CTTGCCGA---CG
CCGCGGCACCGCGCAAGCGCAGGGAGTTGGTCAGCGTCCCAGGGCTCTCGGCGATGGGGATCCACCTCCTGGCCTTCGCC
TTCGTGCAGGTGTTCCAGGCCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTGCCCCGCCACCTCCCCCAGCTCTG
CGCCGTCGTCTCCGCCGAGGTCGCCGCCCACGTCGCCTGGCTGCGCCGCGCCCACGCGAGGCGCCGCGACGACGACGACG
AGGCCCGCCGCCAGGGGCTGCTCTACACCGTGTACTGACATATTCAGAACATACAGTTTCTTCAGTTTCGA-TTTTAGTC
GATTTCTTCGAGCGCTAGCTGCGGAATCA----TGTGT---GTATGTTGGTTG----------------------TAGCA
TCGATCTGTAAATACACTACACCAGTAGTAATTTCTGTTAGGACCGGCTGATTCTTAAGGGATTGTTCGCTCTGTTTTGC
TGCAGC----ATCTCAAA------TACAAGTGTACAGTTCTTCTTCAGGAAATTCATTTGTTTTTCCAGGCCAAAGACAA
GAACTGGCCAGAAGCAAACGTCCTTGTGAGATTATGGAAGGTGCATTCACGTATACAATGTACAGTACTTGTCATCTACT
TGTCGGTT-AAGCAAGTGTCGTGATTAACTAGAATTCAGTCAATTCGTAAAAAAGAACAAGTGTTCAGTCGCGATCATAC
TAAGTA-TATGTGCGTTGCTGAGTCAGCCACACCACCATCCTTAACTGGAAGCATGACAGACATTAATTTAGTCGACAGA
TCTTATGCATACTGCATAATCTGCAATTTTTATACCACCGTAACAAATATCTGAAACTACAACCGGGGTCCTCGAAATAT
TATTGCAAAATGTGCTAAGAAACTGATTCTATAGGTAAAGTACAGTGTGTCTGACACGGTGAAGGCTAAATGTTGACTAT
CCATGGGTCTCCTCCACTATTCA---------------------------------------------------------
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>chr2D_704
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-----------------------------------------------------------------------TCTAGTCGA
TTGGCCGACTCACCTCCAATTAGGCCAGGCCGACCCAACAGCTGTAGCAGGAGCCGTCACATCTTTCCGCGACTCA----
-------------------------------------------ACCATGAATATCCGGCTTCCCCGTCTCAGCGCGCGCC
AACGACATTAA-AAGGTCGTTCCCGGGGAAGGCCGCAACC------------TCCCCGGCAAAAGCATAACCACACCAGC
GCAGCAGC-------CACACACCACCATTCCGACTTCCGAACCAACCAAACACATTTGTTTCTAG--CTCGCCGT---CG
CCGCAGCACCGCGGAAACGCAGGGAGTTGGTCAGCGTCCCAGGGCTCTCAGCGATGGGGATCCACCTCCTGGCGTTCGCC
TTCGTGCAGGTGTTCCAGGCCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTGCCCCGCCACCTCCCCCAGCTCTG
CGCCGTCGTCTCCGGCGAGGTCGCCGCCCACGTCCCCCGGCTGCGCCGCGCGTACGCGAGCCGCCGTGACGACGACGA--
-------CCGCCAGGGGCTGCTCTACACCGCGTACTGACATGGTCGGACCGGACAGTTTCTTCATTTTCGA-CCTTTAGT
TGATTCTTGGATTGCTAGCTGCGGAAT-ATGTGTGTAT---GTCGGTTGGTTG----------------------AAGCA
TCGATCTGTAAATGCACG--------AGTATTTTCTGCTAGGACCGGCTGATTCTTTCGGGATTGCTCGCTCTGTTTTGC
CTCGGC----ATCTCAAA------TACAAGTGTACAGTTGTTCTTCAGGAGATTTGTTTGTTTTCCAT-GG------CAA
GAACCGGCCAGAAG------------------------------------------------------------------
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>chr2B_763
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-----------------------GAGACGTCATATTGCTCGTCACCGTG--TATCCAGGTTCTCTGTCTGAGCGCGCGC-
AACTAGAACAA-AAGGTCGTTCCCGGGGAAGGCCGCAACCCCCTCCCACCCGTCACCGGCAGAAGCATAACCACACACCA
GCAGCAGCATCGGAACAGACATCGCCATTCCGAAG--------AAGCCAACACATTTGTTGCTAG--CTCGCCGT---CG
CCGCAGCTCCGCGCAAACGCAGGGAGTCGGTCAGCGTCCCAGGGCTCCCGGCGATGGGGATCCACCTCCTGGCGTTCGCC
TTCGTGCAGGTGTTCCAGGCCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTGCCCCGCCACCTCCCCCAGCTCTG
CGCCGTCGTCTCCGGCGAGGTCGCCGCCCACGTCGCTTGGCTGCGCCGCGCGTACGCGAGGCGCCGCGACGACGACGACG
AGGGCCGCCGCCAGGGGCTGCTCTACACCGTGTACTGAGATATTCAGAACGGACAGTTTCTTCAGTTTCGA-GTTTTAGT
TGATTTTTCCAGCGGTAGCTGCGGAAT-A----TATATGTAGTATGTTTGTTG----------------------TAGCG
TAGATCTGTGAATACACG--------AGTAATTTCTGCTACGACCGGCTGATTCTTTCGGGATTGTTTGCTCTGTTTTGA
CTCGAC----ATCTCAAA------TACAAGTGTACAGTAGTTCTTCCGGAGATTTGTTTGTTTTCCAT-GG------CAA
GAACCGGCCAGAAGTACACTTTCTTGTGAGATTAT---------------------------------------------
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>SNPs
S-------S--S-----------------------------------------------------S------------S-
---------------------------------------------------S---------SS--S-SSS----------
--------S-----------------------S-------S--S------S-----S--S--------------SS----
-------------------------------S------------S----------S------------S-----S-----
--------S--------------S--S------------------S----------------------------------
--S--SS---S-------S------S---------------S---------S-------S----------------S-S-
---S------------------------------SSS----S---S-SS------------------------SS-----
-----------------S----------S-SSS----------------------------S---------------S--
S-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSSSSSS---S-----
------S---------------------------------------S---------------------------------
---------------------------------------S---------------------------------SS-----
----------S----------S-----------------------------------S--------------S-------
---S--------------S-----------------------S--S------------------S---------------
-S---------S--------S-S---------------------------------------------------------
--------------------------------------------------------SS----------------------
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-------------------------S---------------------------------------------S--------
-------------------------------------S------------------------------------------
--------------S-------S---------------S--S---S-----------S----------------------
-------------------------------------------------------------------S----------S-
-----------------------------------S--------------------------------------------
--------S-----------------------------------------S-----------------------------
------S--------------------------------S----------------------------------------
-----------------------------------------------------------------------------S--
---------------------------------------------S------S---S-------------S-------S-
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_272
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------------TTGTGGGAGAGGAGGTTCCA------------------------------------------------
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>reverse_2327
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------CGCCTGAATTTCCTCCCCAT-----------------------
