Multiple sequence alignment - TraesCS2D01G486500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G486500 chr2D 100.000 3201 0 0 1 3201 586854369 586857569 0.000000e+00 5912.0
1 TraesCS2D01G486500 chr2D 90.204 1031 98 2 1048 2078 594650242 594649215 0.000000e+00 1341.0
2 TraesCS2D01G486500 chr2D 92.777 803 47 5 2203 2998 462788296 462789094 0.000000e+00 1151.0
3 TraesCS2D01G486500 chr2D 89.796 49 2 1 2126 2174 594649191 594649146 3.450000e-05 60.2
4 TraesCS2D01G486500 chr2B 91.746 1260 81 7 952 2191 708354606 708355862 0.000000e+00 1729.0
5 TraesCS2D01G486500 chr2B 89.913 1031 101 2 1048 2078 722347066 722346039 0.000000e+00 1325.0
6 TraesCS2D01G486500 chr2B 87.786 262 20 8 1023 1284 708324801 708325050 2.410000e-76 296.0
7 TraesCS2D01G486500 chr2B 89.744 156 8 4 2999 3151 708355873 708356023 3.260000e-45 193.0
8 TraesCS2D01G486500 chr2B 98.077 52 1 0 3 54 708318701 708318752 1.220000e-14 91.6
9 TraesCS2D01G486500 chr2B 94.340 53 3 0 5 57 708318171 708318223 7.360000e-12 82.4
10 TraesCS2D01G486500 chr2B 94.595 37 2 0 2138 2174 722346009 722345973 1.240000e-04 58.4
11 TraesCS2D01G486500 chr2B 100.000 29 0 0 1 29 708347771 708347799 2.000000e-03 54.7
12 TraesCS2D01G486500 chr2A 90.495 989 89 4 1091 2078 729208048 729207064 0.000000e+00 1301.0
13 TraesCS2D01G486500 chr2A 94.913 688 35 0 1524 2211 721645158 721645845 0.000000e+00 1077.0
14 TraesCS2D01G486500 chr2A 89.437 871 48 16 648 1494 721644310 721645160 0.000000e+00 1059.0
15 TraesCS2D01G486500 chr2A 79.898 393 68 7 59 444 552814845 552814457 8.750000e-71 278.0
16 TraesCS2D01G486500 chr2A 93.289 149 4 3 3003 3151 721645847 721645989 6.950000e-52 215.0
17 TraesCS2D01G486500 chr2A 94.059 101 6 0 522 622 721643784 721643884 1.540000e-33 154.0
18 TraesCS2D01G486500 chr2A 89.796 49 2 1 2126 2174 729207040 729206995 3.450000e-05 60.2
19 TraesCS2D01G486500 chr2A 100.000 29 0 0 1 29 721610156 721610184 2.000000e-03 54.7
20 TraesCS2D01G486500 chr6D 94.571 792 34 4 2203 2986 460866425 460865635 0.000000e+00 1216.0
21 TraesCS2D01G486500 chr6D 93.267 802 38 5 2205 2998 56301749 56302542 0.000000e+00 1168.0
22 TraesCS2D01G486500 chr7D 92.965 796 48 6 2207 2996 636717757 636716964 0.000000e+00 1153.0
23 TraesCS2D01G486500 chr7D 76.220 328 68 7 161 481 35663513 35663837 7.100000e-37 165.0
24 TraesCS2D01G486500 chr7D 76.220 328 68 7 161 481 35723271 35723595 7.100000e-37 165.0
25 TraesCS2D01G486500 chr7D 90.196 51 4 1 3151 3201 491296182 491296231 7.410000e-07 65.8
26 TraesCS2D01G486500 chr7D 96.774 31 1 0 1822 1852 41440006 41439976 6.000000e-03 52.8
27 TraesCS2D01G486500 chr5B 92.469 810 50 6 2198 2998 528380201 528381008 0.000000e+00 1147.0
28 TraesCS2D01G486500 chr5B 80.052 381 64 9 79 453 678057371 678057745 4.070000e-69 272.0
29 TraesCS2D01G486500 chr5B 94.118 51 3 0 3151 3201 568512388 568512338 9.520000e-11 78.7
30 TraesCS2D01G486500 chr1D 92.547 805 51 4 2202 2998 213373754 213374557 0.000000e+00 1146.0
31 TraesCS2D01G486500 chr1D 79.905 423 77 6 66 483 473712533 473712952 1.440000e-78 303.0
32 TraesCS2D01G486500 chr3B 92.327 795 56 3 2204 2994 24919137 24918344 0.000000e+00 1125.0
33 TraesCS2D01G486500 chr3B 79.849 397 63 14 86 473 42138753 42139141 1.130000e-69 274.0
34 TraesCS2D01G486500 chr3B 96.875 32 1 0 1822 1853 239303681 239303712 2.000000e-03 54.7
35 TraesCS2D01G486500 chr7B 91.905 803 57 3 2204 2998 682379511 682380313 0.000000e+00 1116.0
36 TraesCS2D01G486500 chr4D 92.000 800 57 2 2206 2998 82567654 82568453 0.000000e+00 1116.0
37 TraesCS2D01G486500 chr6A 81.019 432 72 8 59 483 613599455 613599883 5.120000e-88 335.0
38 TraesCS2D01G486500 chr1A 78.684 380 71 8 111 483 568042093 568042469 8.870000e-61 244.0
39 TraesCS2D01G486500 chr1B 83.654 208 34 0 143 350 596038136 596037929 2.520000e-46 196.0
40 TraesCS2D01G486500 chr1B 90.196 51 5 0 3151 3201 196353559 196353609 2.060000e-07 67.6
41 TraesCS2D01G486500 chr7A 92.000 50 4 0 3148 3197 660529479 660529528 1.590000e-08 71.3
42 TraesCS2D01G486500 chr7A 93.023 43 3 0 3148 3190 660529147 660529189 2.670000e-06 63.9
43 TraesCS2D01G486500 chr3A 96.970 33 1 0 1822 1854 194701149 194701181 4.460000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G486500 chr2D 586854369 586857569 3200 False 5912.00 5912 100.0000 1 3201 1 chr2D.!!$F2 3200
1 TraesCS2D01G486500 chr2D 462788296 462789094 798 False 1151.00 1151 92.7770 2203 2998 1 chr2D.!!$F1 795
2 TraesCS2D01G486500 chr2D 594649146 594650242 1096 True 700.60 1341 90.0000 1048 2174 2 chr2D.!!$R1 1126
3 TraesCS2D01G486500 chr2B 708354606 708356023 1417 False 961.00 1729 90.7450 952 3151 2 chr2B.!!$F4 2199
4 TraesCS2D01G486500 chr2B 722345973 722347066 1093 True 691.70 1325 92.2540 1048 2174 2 chr2B.!!$R1 1126
5 TraesCS2D01G486500 chr2A 729206995 729208048 1053 True 680.60 1301 90.1455 1091 2174 2 chr2A.!!$R2 1083
6 TraesCS2D01G486500 chr2A 721643784 721645989 2205 False 626.25 1077 92.9245 522 3151 4 chr2A.!!$F2 2629
7 TraesCS2D01G486500 chr6D 460865635 460866425 790 True 1216.00 1216 94.5710 2203 2986 1 chr6D.!!$R1 783
8 TraesCS2D01G486500 chr6D 56301749 56302542 793 False 1168.00 1168 93.2670 2205 2998 1 chr6D.!!$F1 793
9 TraesCS2D01G486500 chr7D 636716964 636717757 793 True 1153.00 1153 92.9650 2207 2996 1 chr7D.!!$R2 789
10 TraesCS2D01G486500 chr5B 528380201 528381008 807 False 1147.00 1147 92.4690 2198 2998 1 chr5B.!!$F1 800
11 TraesCS2D01G486500 chr1D 213373754 213374557 803 False 1146.00 1146 92.5470 2202 2998 1 chr1D.!!$F1 796
12 TraesCS2D01G486500 chr3B 24918344 24919137 793 True 1125.00 1125 92.3270 2204 2994 1 chr3B.!!$R1 790
13 TraesCS2D01G486500 chr7B 682379511 682380313 802 False 1116.00 1116 91.9050 2204 2998 1 chr7B.!!$F1 794
14 TraesCS2D01G486500 chr4D 82567654 82568453 799 False 1116.00 1116 92.0000 2206 2998 1 chr4D.!!$F1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 1224 0.032815 GAGATTACCGCAGAGGAGGC 59.967 60.0 0.0 0.0 45.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2562 3005 0.109919 TGGAGTTCGATGACGTGTCG 60.11 55.0 12.36 12.36 40.69 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.759782 ACTATACCAGAATTGCTACTTTACTGT 58.240 33.333 0.00 0.00 0.00 3.55
27 28 9.601217 CTATACCAGAATTGCTACTTTACTGTT 57.399 33.333 0.00 0.00 0.00 3.16
28 29 6.560253 ACCAGAATTGCTACTTTACTGTTG 57.440 37.500 0.00 0.00 0.00 3.33
29 30 6.296026 ACCAGAATTGCTACTTTACTGTTGA 58.704 36.000 0.00 0.00 0.00 3.18
30 31 6.942576 ACCAGAATTGCTACTTTACTGTTGAT 59.057 34.615 0.00 0.00 0.00 2.57
31 32 7.448469 ACCAGAATTGCTACTTTACTGTTGATT 59.552 33.333 0.00 0.00 0.00 2.57
32 33 7.752239 CCAGAATTGCTACTTTACTGTTGATTG 59.248 37.037 0.00 0.00 0.00 2.67
33 34 7.272084 CAGAATTGCTACTTTACTGTTGATTGC 59.728 37.037 0.00 0.00 0.00 3.56
34 35 6.573664 ATTGCTACTTTACTGTTGATTGCA 57.426 33.333 0.00 0.00 0.00 4.08
35 36 6.384258 TTGCTACTTTACTGTTGATTGCAA 57.616 33.333 0.00 0.00 34.90 4.08
36 37 6.384258 TGCTACTTTACTGTTGATTGCAAA 57.616 33.333 1.71 0.00 35.42 3.68
37 38 6.205784 TGCTACTTTACTGTTGATTGCAAAC 58.794 36.000 1.71 0.04 35.42 2.93
38 39 6.183360 TGCTACTTTACTGTTGATTGCAAACA 60.183 34.615 1.71 3.64 35.42 2.83
39 40 6.142320 GCTACTTTACTGTTGATTGCAAACAC 59.858 38.462 9.14 4.10 35.42 3.32
40 41 5.034152 ACTTTACTGTTGATTGCAAACACG 58.966 37.500 9.14 3.89 35.42 4.49
41 42 1.838913 ACTGTTGATTGCAAACACGC 58.161 45.000 9.14 6.24 35.42 5.34
42 43 1.405105 ACTGTTGATTGCAAACACGCT 59.595 42.857 9.14 0.00 35.42 5.07
43 44 2.616376 ACTGTTGATTGCAAACACGCTA 59.384 40.909 9.14 0.00 35.42 4.26
44 45 3.066064 ACTGTTGATTGCAAACACGCTAA 59.934 39.130 9.14 0.00 35.42 3.09
45 46 4.033990 TGTTGATTGCAAACACGCTAAA 57.966 36.364 9.14 0.00 35.42 1.85
46 47 4.615949 TGTTGATTGCAAACACGCTAAAT 58.384 34.783 9.14 0.00 35.42 1.40
47 48 4.679197 TGTTGATTGCAAACACGCTAAATC 59.321 37.500 9.14 0.00 35.42 2.17
48 49 4.495911 TGATTGCAAACACGCTAAATCA 57.504 36.364 1.71 0.00 34.02 2.57
49 50 5.058149 TGATTGCAAACACGCTAAATCAT 57.942 34.783 1.71 0.00 32.45 2.45
50 51 4.858140 TGATTGCAAACACGCTAAATCATG 59.142 37.500 1.71 0.00 32.45 3.07
51 52 3.214697 TGCAAACACGCTAAATCATGG 57.785 42.857 0.00 0.00 0.00 3.66
52 53 2.556189 TGCAAACACGCTAAATCATGGT 59.444 40.909 0.00 0.00 0.00 3.55
53 54 3.171277 GCAAACACGCTAAATCATGGTC 58.829 45.455 0.00 0.00 0.00 4.02
54 55 3.758300 CAAACACGCTAAATCATGGTCC 58.242 45.455 0.00 0.00 0.00 4.46
55 56 1.651987 ACACGCTAAATCATGGTCCG 58.348 50.000 0.00 0.00 0.00 4.79
56 57 0.304705 CACGCTAAATCATGGTCCGC 59.695 55.000 0.00 0.00 0.00 5.54
57 58 0.178068 ACGCTAAATCATGGTCCGCT 59.822 50.000 0.00 0.00 0.00 5.52
58 59 1.411246 ACGCTAAATCATGGTCCGCTA 59.589 47.619 0.00 0.00 0.00 4.26
59 60 2.159014 ACGCTAAATCATGGTCCGCTAA 60.159 45.455 0.00 0.00 0.00 3.09
60 61 2.869801 CGCTAAATCATGGTCCGCTAAA 59.130 45.455 0.00 0.00 0.00 1.85
61 62 3.303132 CGCTAAATCATGGTCCGCTAAAC 60.303 47.826 0.00 0.00 0.00 2.01
62 63 3.003378 GCTAAATCATGGTCCGCTAAACC 59.997 47.826 0.00 0.00 37.31 3.27
63 64 2.052782 AATCATGGTCCGCTAAACCC 57.947 50.000 0.00 0.00 35.84 4.11
64 65 0.179056 ATCATGGTCCGCTAAACCCG 60.179 55.000 0.00 0.00 35.84 5.28
65 66 1.817941 CATGGTCCGCTAAACCCGG 60.818 63.158 0.00 0.00 46.88 5.73
71 72 3.884900 CGCTAAACCCGGAACAGG 58.115 61.111 0.73 0.00 0.00 4.00
72 73 2.396157 CGCTAAACCCGGAACAGGC 61.396 63.158 0.73 0.20 0.00 4.85
73 74 1.302993 GCTAAACCCGGAACAGGCA 60.303 57.895 0.73 0.00 0.00 4.75
74 75 1.583495 GCTAAACCCGGAACAGGCAC 61.583 60.000 0.73 0.00 0.00 5.01
75 76 0.958876 CTAAACCCGGAACAGGCACC 60.959 60.000 0.73 0.00 0.00 5.01
79 80 4.077184 CCGGAACAGGCACCGCTA 62.077 66.667 0.00 0.00 46.59 4.26
80 81 2.186903 CGGAACAGGCACCGCTAT 59.813 61.111 0.00 0.00 42.55 2.97
81 82 1.883084 CGGAACAGGCACCGCTATC 60.883 63.158 0.00 0.00 42.55 2.08
82 83 1.883084 GGAACAGGCACCGCTATCG 60.883 63.158 0.00 0.00 0.00 2.92
83 84 1.141019 GAACAGGCACCGCTATCGA 59.859 57.895 0.00 0.00 38.10 3.59
84 85 0.249489 GAACAGGCACCGCTATCGAT 60.249 55.000 2.16 2.16 38.10 3.59
85 86 0.178068 AACAGGCACCGCTATCGATT 59.822 50.000 1.71 0.00 38.10 3.34
86 87 0.178068 ACAGGCACCGCTATCGATTT 59.822 50.000 1.71 0.00 38.10 2.17
87 88 1.299541 CAGGCACCGCTATCGATTTT 58.700 50.000 1.71 0.00 38.10 1.82
88 89 1.670811 CAGGCACCGCTATCGATTTTT 59.329 47.619 1.71 0.00 38.10 1.94
108 109 5.715434 TTTTTAGCTAAAAAGACCGCCAT 57.285 34.783 31.20 0.00 39.46 4.40
109 110 4.695217 TTTAGCTAAAAAGACCGCCATG 57.305 40.909 16.53 0.00 0.00 3.66
110 111 0.811281 AGCTAAAAAGACCGCCATGC 59.189 50.000 0.00 0.00 0.00 4.06
111 112 0.525761 GCTAAAAAGACCGCCATGCA 59.474 50.000 0.00 0.00 0.00 3.96
112 113 1.067915 GCTAAAAAGACCGCCATGCAA 60.068 47.619 0.00 0.00 0.00 4.08
113 114 2.417243 GCTAAAAAGACCGCCATGCAAT 60.417 45.455 0.00 0.00 0.00 3.56
114 115 2.837532 AAAAAGACCGCCATGCAATT 57.162 40.000 0.00 0.00 0.00 2.32
115 116 2.083167 AAAAGACCGCCATGCAATTG 57.917 45.000 0.00 0.00 0.00 2.32
116 117 0.247185 AAAGACCGCCATGCAATTGG 59.753 50.000 7.72 1.68 39.94 3.16
117 118 0.611618 AAGACCGCCATGCAATTGGA 60.612 50.000 10.63 4.46 39.25 3.53
118 119 1.139520 GACCGCCATGCAATTGGAC 59.860 57.895 10.63 1.20 39.25 4.02
119 120 2.283472 GACCGCCATGCAATTGGACC 62.283 60.000 10.63 0.00 39.25 4.46
120 121 2.349672 CCGCCATGCAATTGGACCA 61.350 57.895 10.63 0.00 39.25 4.02
121 122 1.140161 CGCCATGCAATTGGACCAG 59.860 57.895 10.63 0.00 39.25 4.00
122 123 1.314534 CGCCATGCAATTGGACCAGA 61.315 55.000 10.63 0.00 39.25 3.86
123 124 0.896923 GCCATGCAATTGGACCAGAA 59.103 50.000 10.63 0.00 39.25 3.02
124 125 1.275856 GCCATGCAATTGGACCAGAAA 59.724 47.619 10.63 0.00 39.25 2.52
125 126 2.289569 GCCATGCAATTGGACCAGAAAA 60.290 45.455 10.63 0.00 39.25 2.29
126 127 3.806507 GCCATGCAATTGGACCAGAAAAA 60.807 43.478 10.63 0.00 39.25 1.94
154 155 2.478746 CCGGTCGGTTTTCGCATG 59.521 61.111 0.55 0.00 39.05 4.06
155 156 2.030401 CCGGTCGGTTTTCGCATGA 61.030 57.895 0.00 0.00 39.05 3.07
156 157 1.570347 CCGGTCGGTTTTCGCATGAA 61.570 55.000 0.00 0.00 39.05 2.57
157 158 0.452122 CGGTCGGTTTTCGCATGAAC 60.452 55.000 0.00 0.00 39.05 3.18
158 159 0.109919 GGTCGGTTTTCGCATGAACC 60.110 55.000 0.00 0.00 41.47 3.62
159 160 0.589223 GTCGGTTTTCGCATGAACCA 59.411 50.000 12.93 0.38 44.37 3.67
160 161 0.871722 TCGGTTTTCGCATGAACCAG 59.128 50.000 12.93 7.03 44.37 4.00
161 162 0.871722 CGGTTTTCGCATGAACCAGA 59.128 50.000 12.93 0.00 44.37 3.86
162 163 1.135972 CGGTTTTCGCATGAACCAGAG 60.136 52.381 12.93 0.00 44.37 3.35
163 164 1.200020 GGTTTTCGCATGAACCAGAGG 59.800 52.381 8.73 0.00 43.75 3.69
164 165 1.880027 GTTTTCGCATGAACCAGAGGT 59.120 47.619 0.00 0.00 37.65 3.85
165 166 3.071479 GTTTTCGCATGAACCAGAGGTA 58.929 45.455 0.00 0.00 33.12 3.08
166 167 3.627395 TTTCGCATGAACCAGAGGTAT 57.373 42.857 0.00 0.00 33.12 2.73
167 168 4.746535 TTTCGCATGAACCAGAGGTATA 57.253 40.909 0.00 0.00 33.12 1.47
168 169 4.746535 TTCGCATGAACCAGAGGTATAA 57.253 40.909 0.00 0.00 33.12 0.98
169 170 4.746535 TCGCATGAACCAGAGGTATAAA 57.253 40.909 0.00 0.00 33.12 1.40
170 171 5.092554 TCGCATGAACCAGAGGTATAAAA 57.907 39.130 0.00 0.00 33.12 1.52
171 172 4.873827 TCGCATGAACCAGAGGTATAAAAC 59.126 41.667 0.00 0.00 33.12 2.43
172 173 8.964623 TTTCGCATGAACCAGAGGTATAAAACC 61.965 40.741 0.00 0.00 40.44 3.27
183 184 4.087510 GGTATAAAACCGGCAGTTGAAC 57.912 45.455 0.00 0.00 39.19 3.18
184 185 3.119743 GGTATAAAACCGGCAGTTGAACC 60.120 47.826 0.00 0.00 39.19 3.62
185 186 2.054232 TAAAACCGGCAGTTGAACCA 57.946 45.000 0.00 0.00 39.19 3.67
186 187 0.744281 AAAACCGGCAGTTGAACCAG 59.256 50.000 0.00 0.00 39.19 4.00
187 188 0.395173 AAACCGGCAGTTGAACCAGT 60.395 50.000 0.00 0.00 39.19 4.00
188 189 1.101049 AACCGGCAGTTGAACCAGTG 61.101 55.000 0.00 0.00 37.29 3.66
189 190 2.260869 CCGGCAGTTGAACCAGTGG 61.261 63.158 7.91 7.91 0.00 4.00
190 191 2.908073 CGGCAGTTGAACCAGTGGC 61.908 63.158 9.78 0.00 0.00 5.01
191 192 1.827789 GGCAGTTGAACCAGTGGCA 60.828 57.895 9.78 0.00 35.63 4.92
192 193 1.181098 GGCAGTTGAACCAGTGGCAT 61.181 55.000 9.78 0.00 35.63 4.40
193 194 0.038892 GCAGTTGAACCAGTGGCATG 60.039 55.000 9.78 0.31 0.00 4.06
194 195 0.038892 CAGTTGAACCAGTGGCATGC 60.039 55.000 9.90 9.90 0.00 4.06
195 196 0.467844 AGTTGAACCAGTGGCATGCA 60.468 50.000 21.36 2.54 0.00 3.96
196 197 0.318955 GTTGAACCAGTGGCATGCAC 60.319 55.000 21.36 15.34 0.00 4.57
197 198 0.754587 TTGAACCAGTGGCATGCACA 60.755 50.000 21.36 12.37 0.00 4.57
198 199 0.754587 TGAACCAGTGGCATGCACAA 60.755 50.000 21.36 0.80 0.00 3.33
199 200 0.388659 GAACCAGTGGCATGCACAAA 59.611 50.000 21.36 0.00 0.00 2.83
200 201 1.001181 GAACCAGTGGCATGCACAAAT 59.999 47.619 21.36 0.14 0.00 2.32
201 202 1.921982 ACCAGTGGCATGCACAAATA 58.078 45.000 21.36 0.00 0.00 1.40
202 203 2.459644 ACCAGTGGCATGCACAAATAT 58.540 42.857 21.36 0.00 0.00 1.28
203 204 3.630168 ACCAGTGGCATGCACAAATATA 58.370 40.909 21.36 0.00 0.00 0.86
204 205 3.633525 ACCAGTGGCATGCACAAATATAG 59.366 43.478 21.36 1.00 0.00 1.31
205 206 3.884693 CCAGTGGCATGCACAAATATAGA 59.115 43.478 21.36 0.00 0.00 1.98
206 207 4.338964 CCAGTGGCATGCACAAATATAGAA 59.661 41.667 21.36 0.00 0.00 2.10
207 208 5.163530 CCAGTGGCATGCACAAATATAGAAA 60.164 40.000 21.36 0.00 0.00 2.52
208 209 6.331845 CAGTGGCATGCACAAATATAGAAAA 58.668 36.000 21.36 0.00 0.00 2.29
209 210 6.474427 CAGTGGCATGCACAAATATAGAAAAG 59.526 38.462 21.36 0.00 0.00 2.27
210 211 6.153340 AGTGGCATGCACAAATATAGAAAAGT 59.847 34.615 21.36 0.00 0.00 2.66
211 212 7.339212 AGTGGCATGCACAAATATAGAAAAGTA 59.661 33.333 21.36 0.00 0.00 2.24
212 213 7.973388 GTGGCATGCACAAATATAGAAAAGTAA 59.027 33.333 21.36 0.00 0.00 2.24
213 214 7.973388 TGGCATGCACAAATATAGAAAAGTAAC 59.027 33.333 21.36 0.00 0.00 2.50
214 215 7.435192 GGCATGCACAAATATAGAAAAGTAACC 59.565 37.037 21.36 0.00 0.00 2.85
215 216 8.190784 GCATGCACAAATATAGAAAAGTAACCT 58.809 33.333 14.21 0.00 0.00 3.50
216 217 9.507280 CATGCACAAATATAGAAAAGTAACCTG 57.493 33.333 0.00 0.00 0.00 4.00
217 218 8.630054 TGCACAAATATAGAAAAGTAACCTGT 57.370 30.769 0.00 0.00 0.00 4.00
218 219 8.511321 TGCACAAATATAGAAAAGTAACCTGTG 58.489 33.333 0.00 0.00 33.99 3.66
219 220 8.512138 GCACAAATATAGAAAAGTAACCTGTGT 58.488 33.333 0.00 0.00 33.53 3.72
221 222 9.787435 ACAAATATAGAAAAGTAACCTGTGTCA 57.213 29.630 0.00 0.00 0.00 3.58
226 227 6.436843 AGAAAAGTAACCTGTGTCAAAGTG 57.563 37.500 0.00 0.00 0.00 3.16
227 228 5.357032 AGAAAAGTAACCTGTGTCAAAGTGG 59.643 40.000 0.00 0.00 0.00 4.00
228 229 4.497291 AAGTAACCTGTGTCAAAGTGGA 57.503 40.909 0.00 0.00 0.00 4.02
229 230 4.706842 AGTAACCTGTGTCAAAGTGGAT 57.293 40.909 0.00 0.00 0.00 3.41
230 231 5.048846 AGTAACCTGTGTCAAAGTGGATT 57.951 39.130 0.00 0.00 0.00 3.01
231 232 5.445964 AGTAACCTGTGTCAAAGTGGATTT 58.554 37.500 0.00 0.00 0.00 2.17
256 257 9.662947 TTGAATCCAAGATGCTAGATATATGTG 57.337 33.333 0.00 0.00 0.00 3.21
257 258 8.819845 TGAATCCAAGATGCTAGATATATGTGT 58.180 33.333 0.00 0.00 0.00 3.72
258 259 9.096160 GAATCCAAGATGCTAGATATATGTGTG 57.904 37.037 0.00 0.00 0.00 3.82
259 260 7.544804 TCCAAGATGCTAGATATATGTGTGT 57.455 36.000 0.00 0.00 0.00 3.72
260 261 8.650143 TCCAAGATGCTAGATATATGTGTGTA 57.350 34.615 0.00 0.00 0.00 2.90
261 262 9.088987 TCCAAGATGCTAGATATATGTGTGTAA 57.911 33.333 0.00 0.00 0.00 2.41
262 263 9.363763 CCAAGATGCTAGATATATGTGTGTAAG 57.636 37.037 0.00 0.00 0.00 2.34
263 264 9.920133 CAAGATGCTAGATATATGTGTGTAAGT 57.080 33.333 0.00 0.00 0.00 2.24
265 266 9.920133 AGATGCTAGATATATGTGTGTAAGTTG 57.080 33.333 0.00 0.00 0.00 3.16
266 267 9.698309 GATGCTAGATATATGTGTGTAAGTTGT 57.302 33.333 0.00 0.00 0.00 3.32
269 270 9.130312 GCTAGATATATGTGTGTAAGTTGTAGC 57.870 37.037 0.00 0.00 0.00 3.58
274 275 5.689383 ATGTGTGTAAGTTGTAGCTTTGG 57.311 39.130 0.00 0.00 0.00 3.28
275 276 3.314080 TGTGTGTAAGTTGTAGCTTTGGC 59.686 43.478 0.00 0.00 39.06 4.52
276 277 3.314080 GTGTGTAAGTTGTAGCTTTGGCA 59.686 43.478 0.00 0.00 41.70 4.92
277 278 3.314080 TGTGTAAGTTGTAGCTTTGGCAC 59.686 43.478 0.00 0.00 41.70 5.01
278 279 3.564225 GTGTAAGTTGTAGCTTTGGCACT 59.436 43.478 0.00 0.00 41.70 4.40
279 280 4.753107 GTGTAAGTTGTAGCTTTGGCACTA 59.247 41.667 0.00 0.00 41.70 2.74
280 281 5.411669 GTGTAAGTTGTAGCTTTGGCACTAT 59.588 40.000 0.00 0.00 41.70 2.12
281 282 6.592607 GTGTAAGTTGTAGCTTTGGCACTATA 59.407 38.462 0.00 0.00 41.70 1.31
282 283 7.118680 GTGTAAGTTGTAGCTTTGGCACTATAA 59.881 37.037 0.00 0.00 41.70 0.98
283 284 6.496338 AAGTTGTAGCTTTGGCACTATAAC 57.504 37.500 12.38 12.38 39.44 1.89
284 285 4.941873 AGTTGTAGCTTTGGCACTATAACC 59.058 41.667 15.06 3.73 39.77 2.85
285 286 4.561500 TGTAGCTTTGGCACTATAACCA 57.438 40.909 0.00 0.00 41.70 3.67
286 287 5.110814 TGTAGCTTTGGCACTATAACCAT 57.889 39.130 0.00 0.00 41.70 3.55
287 288 6.241882 TGTAGCTTTGGCACTATAACCATA 57.758 37.500 0.00 0.00 41.70 2.74
288 289 6.837312 TGTAGCTTTGGCACTATAACCATAT 58.163 36.000 0.00 0.00 41.70 1.78
289 290 7.287061 TGTAGCTTTGGCACTATAACCATATT 58.713 34.615 0.00 0.00 41.70 1.28
290 291 6.639632 AGCTTTGGCACTATAACCATATTG 57.360 37.500 0.00 0.00 41.70 1.90
291 292 5.536161 AGCTTTGGCACTATAACCATATTGG 59.464 40.000 0.00 0.00 41.74 3.16
292 293 5.772521 CTTTGGCACTATAACCATATTGGC 58.227 41.667 0.00 2.78 42.67 4.52
293 294 4.722526 TGGCACTATAACCATATTGGCT 57.277 40.909 9.05 0.00 42.67 4.75
294 295 5.834281 TGGCACTATAACCATATTGGCTA 57.166 39.130 9.05 0.00 42.67 3.93
295 296 6.387192 TGGCACTATAACCATATTGGCTAT 57.613 37.500 9.05 0.00 42.67 2.97
296 297 6.414732 TGGCACTATAACCATATTGGCTATC 58.585 40.000 9.05 0.00 42.67 2.08
297 298 5.823045 GGCACTATAACCATATTGGCTATCC 59.177 44.000 0.00 0.00 42.67 2.59
298 299 6.414732 GCACTATAACCATATTGGCTATCCA 58.585 40.000 0.00 0.00 42.67 3.41
310 311 4.746535 TGGCTATCCAACTTTCGTATCA 57.253 40.909 0.00 0.00 39.99 2.15
311 312 5.092554 TGGCTATCCAACTTTCGTATCAA 57.907 39.130 0.00 0.00 39.99 2.57
312 313 5.492895 TGGCTATCCAACTTTCGTATCAAA 58.507 37.500 0.00 0.00 39.99 2.69
313 314 6.119536 TGGCTATCCAACTTTCGTATCAAAT 58.880 36.000 0.00 0.00 39.99 2.32
314 315 6.601613 TGGCTATCCAACTTTCGTATCAAATT 59.398 34.615 0.00 0.00 39.99 1.82
315 316 7.122055 TGGCTATCCAACTTTCGTATCAAATTT 59.878 33.333 0.00 0.00 39.99 1.82
316 317 8.617809 GGCTATCCAACTTTCGTATCAAATTTA 58.382 33.333 0.00 0.00 0.00 1.40
317 318 9.997482 GCTATCCAACTTTCGTATCAAATTTAA 57.003 29.630 0.00 0.00 0.00 1.52
361 362 9.605275 ACATCTATTTAGTACGACACTAGTACA 57.395 33.333 0.00 0.00 44.92 2.90
362 363 9.861138 CATCTATTTAGTACGACACTAGTACAC 57.139 37.037 0.00 0.00 44.92 2.90
363 364 8.120030 TCTATTTAGTACGACACTAGTACACG 57.880 38.462 0.00 4.56 44.92 4.49
364 365 5.530519 TTTAGTACGACACTAGTACACGG 57.469 43.478 15.92 0.00 44.92 4.94
365 366 3.319137 AGTACGACACTAGTACACGGA 57.681 47.619 15.92 7.97 44.92 4.69
366 367 3.664107 AGTACGACACTAGTACACGGAA 58.336 45.455 15.92 5.25 44.92 4.30
367 368 4.065088 AGTACGACACTAGTACACGGAAA 58.935 43.478 15.92 3.44 44.92 3.13
368 369 3.988379 ACGACACTAGTACACGGAAAA 57.012 42.857 15.92 0.00 0.00 2.29
369 370 4.305989 ACGACACTAGTACACGGAAAAA 57.694 40.909 15.92 0.00 0.00 1.94
400 401 9.931210 GATATAAGAAAACAGAAATGTAACCGG 57.069 33.333 0.00 0.00 0.00 5.28
401 402 4.499037 AGAAAACAGAAATGTAACCGGC 57.501 40.909 0.00 0.00 0.00 6.13
402 403 2.981400 AAACAGAAATGTAACCGGCG 57.019 45.000 0.00 0.00 0.00 6.46
403 404 2.172851 AACAGAAATGTAACCGGCGA 57.827 45.000 9.30 0.00 0.00 5.54
404 405 2.172851 ACAGAAATGTAACCGGCGAA 57.827 45.000 9.30 0.00 0.00 4.70
405 406 2.496111 ACAGAAATGTAACCGGCGAAA 58.504 42.857 9.30 0.00 0.00 3.46
406 407 2.224784 ACAGAAATGTAACCGGCGAAAC 59.775 45.455 9.30 3.65 0.00 2.78
407 408 1.808343 AGAAATGTAACCGGCGAAACC 59.192 47.619 9.30 0.00 0.00 3.27
428 429 3.211803 GGCAATCCGACTGGTAAAAAC 57.788 47.619 0.00 0.00 36.30 2.43
429 430 2.094906 GGCAATCCGACTGGTAAAAACC 60.095 50.000 0.00 0.00 36.30 3.27
430 431 2.817844 GCAATCCGACTGGTAAAAACCT 59.182 45.455 0.00 0.00 36.30 3.50
431 432 3.365969 GCAATCCGACTGGTAAAAACCTG 60.366 47.826 0.44 0.44 36.30 4.00
432 433 3.782656 ATCCGACTGGTAAAAACCTGT 57.217 42.857 6.78 6.78 43.26 4.00
433 434 4.895668 ATCCGACTGGTAAAAACCTGTA 57.104 40.909 7.02 0.00 41.15 2.74
434 435 3.993920 TCCGACTGGTAAAAACCTGTAC 58.006 45.455 7.02 0.00 41.15 2.90
435 436 3.069289 CCGACTGGTAAAAACCTGTACC 58.931 50.000 7.02 0.00 41.15 3.34
436 437 2.733026 CGACTGGTAAAAACCTGTACCG 59.267 50.000 7.02 4.68 42.39 4.02
438 439 1.808343 CTGGTAAAAACCTGTACCGGC 59.192 52.381 0.00 0.00 42.39 6.13
439 440 0.798159 GGTAAAAACCTGTACCGGCG 59.202 55.000 0.00 0.00 30.94 6.46
440 441 0.798159 GTAAAAACCTGTACCGGCGG 59.202 55.000 27.06 27.06 0.00 6.13
441 442 0.954938 TAAAAACCTGTACCGGCGGC 60.955 55.000 28.71 11.75 0.00 6.53
442 443 4.710167 AAACCTGTACCGGCGGCC 62.710 66.667 28.71 17.89 0.00 6.13
456 457 4.142780 GGCCTTGCCGGTTCTATC 57.857 61.111 1.90 0.00 39.62 2.08
457 458 1.223487 GGCCTTGCCGGTTCTATCA 59.777 57.895 1.90 0.00 39.62 2.15
458 459 1.095807 GGCCTTGCCGGTTCTATCAC 61.096 60.000 1.90 0.00 39.62 3.06
459 460 0.392461 GCCTTGCCGGTTCTATCACA 60.392 55.000 1.90 0.00 34.25 3.58
460 461 1.656652 CCTTGCCGGTTCTATCACAG 58.343 55.000 1.90 0.00 0.00 3.66
461 462 1.656652 CTTGCCGGTTCTATCACAGG 58.343 55.000 1.90 0.00 35.26 4.00
462 463 0.981183 TTGCCGGTTCTATCACAGGT 59.019 50.000 1.90 0.00 34.67 4.00
463 464 0.981183 TGCCGGTTCTATCACAGGTT 59.019 50.000 1.90 0.00 34.67 3.50
464 465 1.066430 TGCCGGTTCTATCACAGGTTC 60.066 52.381 1.90 0.00 34.67 3.62
465 466 1.922570 CCGGTTCTATCACAGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
466 467 1.470979 CCGGTTCTATCACAGGTTCGG 60.471 57.143 0.00 0.00 0.00 4.30
467 468 1.203994 CGGTTCTATCACAGGTTCGGT 59.796 52.381 0.00 0.00 0.00 4.69
468 469 2.353406 CGGTTCTATCACAGGTTCGGTT 60.353 50.000 0.00 0.00 0.00 4.44
469 470 3.671716 GGTTCTATCACAGGTTCGGTTT 58.328 45.455 0.00 0.00 0.00 3.27
470 471 4.070009 GGTTCTATCACAGGTTCGGTTTT 58.930 43.478 0.00 0.00 0.00 2.43
471 472 4.517832 GGTTCTATCACAGGTTCGGTTTTT 59.482 41.667 0.00 0.00 0.00 1.94
494 495 9.832445 TTTTTAAGCTATGGTCCTAGTATCTTG 57.168 33.333 0.00 0.00 0.00 3.02
495 496 5.476091 AAGCTATGGTCCTAGTATCTTGC 57.524 43.478 0.00 0.00 0.00 4.01
496 497 4.746466 AGCTATGGTCCTAGTATCTTGCT 58.254 43.478 0.00 0.00 0.00 3.91
497 498 4.526262 AGCTATGGTCCTAGTATCTTGCTG 59.474 45.833 0.00 0.00 0.00 4.41
498 499 3.760580 ATGGTCCTAGTATCTTGCTGC 57.239 47.619 0.00 0.00 0.00 5.25
499 500 1.762957 TGGTCCTAGTATCTTGCTGCC 59.237 52.381 0.00 0.00 0.00 4.85
500 501 1.269831 GGTCCTAGTATCTTGCTGCCG 60.270 57.143 0.00 0.00 0.00 5.69
501 502 0.389391 TCCTAGTATCTTGCTGCCGC 59.611 55.000 0.00 0.00 0.00 6.53
502 503 0.104855 CCTAGTATCTTGCTGCCGCA 59.895 55.000 0.00 0.00 46.24 5.69
518 519 3.736483 CAGTTGTTGCACTCGGCT 58.264 55.556 0.00 0.00 45.15 5.52
519 520 1.280746 CAGTTGTTGCACTCGGCTG 59.719 57.895 0.00 0.00 45.15 4.85
520 521 1.893808 AGTTGTTGCACTCGGCTGG 60.894 57.895 0.00 0.00 45.15 4.85
538 539 2.125512 GGTCGTGCTCGCCATCTT 60.126 61.111 14.04 0.00 36.96 2.40
622 623 4.877773 AGTGAACAGAGGGATCTATCAGT 58.122 43.478 0.00 0.00 0.00 3.41
623 624 5.276440 AGTGAACAGAGGGATCTATCAGTT 58.724 41.667 7.75 7.75 0.00 3.16
624 625 6.436027 AGTGAACAGAGGGATCTATCAGTTA 58.564 40.000 7.93 0.00 0.00 2.24
627 853 6.322456 TGAACAGAGGGATCTATCAGTTAGTG 59.678 42.308 7.93 0.00 0.00 2.74
633 859 4.042187 GGGATCTATCAGTTAGTGGGCAAT 59.958 45.833 0.00 0.00 0.00 3.56
639 865 7.952671 TCTATCAGTTAGTGGGCAATTAGTAG 58.047 38.462 0.00 0.00 0.00 2.57
642 868 5.128827 TCAGTTAGTGGGCAATTAGTAGAGG 59.871 44.000 0.00 0.00 0.00 3.69
686 1087 3.619038 CGTTCCAAGATGCTAGAGTTTCC 59.381 47.826 0.00 0.00 0.00 3.13
690 1091 3.539604 CAAGATGCTAGAGTTTCCTGGG 58.460 50.000 0.00 0.00 0.00 4.45
700 1101 0.953960 GTTTCCTGGGTGCGTCGATT 60.954 55.000 0.00 0.00 0.00 3.34
703 1113 0.609151 TCCTGGGTGCGTCGATTTAA 59.391 50.000 0.00 0.00 0.00 1.52
716 1126 4.072919 GTCGATTTAAGAACAAAGTCGCG 58.927 43.478 0.00 0.00 0.00 5.87
731 1141 1.738350 GTCGCGCATATCCTAGCTAGA 59.262 52.381 22.70 8.71 0.00 2.43
736 1146 3.677424 GCGCATATCCTAGCTAGAAAGGG 60.677 52.174 22.70 14.59 33.40 3.95
740 1150 3.847671 ATCCTAGCTAGAAAGGGTTGC 57.152 47.619 22.70 0.00 33.40 4.17
749 1159 3.857157 AGAAAGGGTTGCTGTAAGTCA 57.143 42.857 0.00 0.00 35.30 3.41
778 1188 2.664402 ACTTGGTTTCATGTGGCTCT 57.336 45.000 0.00 0.00 31.23 4.09
779 1189 3.788227 ACTTGGTTTCATGTGGCTCTA 57.212 42.857 0.00 0.00 31.23 2.43
780 1190 3.679389 ACTTGGTTTCATGTGGCTCTAG 58.321 45.455 0.00 0.00 31.23 2.43
814 1224 0.032815 GAGATTACCGCAGAGGAGGC 59.967 60.000 0.00 0.00 45.00 4.70
816 1226 1.133450 AGATTACCGCAGAGGAGGCTA 60.133 52.381 0.00 0.00 45.00 3.93
850 1260 1.698506 AATGGCAACGTTTCCCTCAA 58.301 45.000 14.57 0.00 45.79 3.02
851 1261 1.698506 ATGGCAACGTTTCCCTCAAA 58.301 45.000 14.57 0.00 42.51 2.69
852 1262 1.028905 TGGCAACGTTTCCCTCAAAG 58.971 50.000 14.57 0.00 42.51 2.77
853 1263 0.313987 GGCAACGTTTCCCTCAAAGG 59.686 55.000 5.58 0.00 36.18 3.11
871 1281 9.336171 CCTCAAAGGAAAAAGAGATAGGATTAG 57.664 37.037 0.00 0.00 37.67 1.73
886 1296 8.778358 AGATAGGATTAGATCAATTTGAAACGC 58.222 33.333 2.68 0.00 0.00 4.84
916 1326 8.641499 TTTTTATGACATGGAGTTTGAAACAC 57.359 30.769 11.02 3.75 0.00 3.32
998 1408 2.202518 CGTGACGTTCGCGGGTAT 60.203 61.111 6.13 0.00 45.61 2.73
999 1409 1.062365 CGTGACGTTCGCGGGTATA 59.938 57.895 6.13 0.00 45.61 1.47
1000 1410 1.196130 CGTGACGTTCGCGGGTATAC 61.196 60.000 6.13 0.00 45.61 1.47
1022 1441 6.097915 ACTATATATTCAACCCTGACCACG 57.902 41.667 0.00 0.00 0.00 4.94
1024 1443 2.754946 TATTCAACCCTGACCACGAC 57.245 50.000 0.00 0.00 0.00 4.34
1062 1487 1.293498 GGATCGATATGGCAGCCGT 59.707 57.895 11.99 11.99 0.00 5.68
1066 1491 2.032681 GATATGGCAGCCGTCCCC 59.967 66.667 10.31 0.00 0.00 4.81
1273 1698 4.530857 GGCTACAGCACGGCGGAT 62.531 66.667 13.24 0.00 44.36 4.18
1425 1850 1.526887 CAAGTACGACACCTTGTGCAG 59.473 52.381 0.00 0.00 36.98 4.41
1726 2151 4.059459 GCGCAGTCGTCGTGGTTG 62.059 66.667 0.30 0.00 38.14 3.77
2033 2476 0.173708 CTACTCGTGCAAGGACCTCC 59.826 60.000 0.00 0.00 0.00 4.30
2036 2479 2.046892 CGTGCAAGGACCTCCAGG 60.047 66.667 0.00 0.00 38.89 4.45
2168 2611 1.403814 GACGAGGAGGATCATGGACA 58.596 55.000 0.00 0.00 36.25 4.02
2192 2635 4.662961 CCACGAGTGGCGCTGACA 62.663 66.667 4.71 0.00 44.73 3.58
2269 2712 9.830294 CGACCATAATATAAGTCACGTACATAA 57.170 33.333 0.00 0.00 0.00 1.90
2418 2861 1.039233 GGCAACACCATAGCAGCCAT 61.039 55.000 0.00 0.00 41.63 4.40
2427 2870 2.228059 CATAGCAGCCATCAAAGGAGG 58.772 52.381 0.00 0.00 0.00 4.30
2780 3225 2.113243 GAAGCCCGAGGACACAGGTT 62.113 60.000 0.00 0.00 0.00 3.50
2841 3298 2.178984 TCTGGTTTTCAAATCCACCCCT 59.821 45.455 0.00 0.00 0.00 4.79
2856 3313 0.464452 CCCCTAAAGCGGATCGTCTT 59.536 55.000 0.00 0.00 0.00 3.01
2966 3427 7.480760 AACTAATGCCTAAAACAATCCACAT 57.519 32.000 0.00 0.00 0.00 3.21
3000 3461 3.009115 CCCCCTCACCACCGATGT 61.009 66.667 0.00 0.00 0.00 3.06
3001 3462 1.687840 CCCCCTCACCACCGATGTA 60.688 63.158 0.00 0.00 0.00 2.29
3007 3468 2.429250 CCTCACCACCGATGTATGTGTA 59.571 50.000 0.00 0.00 31.67 2.90
3159 3623 6.447162 AGCTAGTTTTGTTTTAGGATTGTGC 58.553 36.000 0.00 0.00 0.00 4.57
3160 3624 6.265422 AGCTAGTTTTGTTTTAGGATTGTGCT 59.735 34.615 0.00 0.00 0.00 4.40
3161 3625 7.447238 AGCTAGTTTTGTTTTAGGATTGTGCTA 59.553 33.333 0.00 0.00 0.00 3.49
3162 3626 8.079809 GCTAGTTTTGTTTTAGGATTGTGCTAA 58.920 33.333 0.00 0.00 0.00 3.09
3164 3628 8.816640 AGTTTTGTTTTAGGATTGTGCTAATG 57.183 30.769 0.00 0.00 30.42 1.90
3165 3629 8.421002 AGTTTTGTTTTAGGATTGTGCTAATGT 58.579 29.630 0.00 0.00 30.42 2.71
3166 3630 8.699749 GTTTTGTTTTAGGATTGTGCTAATGTC 58.300 33.333 0.00 0.00 30.42 3.06
3167 3631 6.509418 TGTTTTAGGATTGTGCTAATGTCC 57.491 37.500 0.00 0.00 30.42 4.02
3168 3632 6.007076 TGTTTTAGGATTGTGCTAATGTCCA 58.993 36.000 0.00 0.00 30.42 4.02
3169 3633 6.150976 TGTTTTAGGATTGTGCTAATGTCCAG 59.849 38.462 0.00 0.00 30.42 3.86
3170 3634 5.435686 TTAGGATTGTGCTAATGTCCAGT 57.564 39.130 0.00 0.00 0.00 4.00
3171 3635 3.878778 AGGATTGTGCTAATGTCCAGTC 58.121 45.455 0.00 0.00 0.00 3.51
3172 3636 2.609459 GGATTGTGCTAATGTCCAGTCG 59.391 50.000 0.00 0.00 0.00 4.18
3173 3637 3.521560 GATTGTGCTAATGTCCAGTCGA 58.478 45.455 0.00 0.00 0.00 4.20
3174 3638 2.363788 TGTGCTAATGTCCAGTCGAC 57.636 50.000 7.70 7.70 42.33 4.20
3175 3639 1.893137 TGTGCTAATGTCCAGTCGACT 59.107 47.619 13.58 13.58 42.49 4.18
3176 3640 2.263077 GTGCTAATGTCCAGTCGACTG 58.737 52.381 33.87 33.87 42.49 3.51
3187 3651 3.484524 GTCGACTGGACGTTAAGCA 57.515 52.632 8.70 0.00 35.61 3.91
3188 3652 1.774639 GTCGACTGGACGTTAAGCAA 58.225 50.000 8.70 0.00 35.61 3.91
3189 3653 1.454653 GTCGACTGGACGTTAAGCAAC 59.545 52.381 8.70 0.00 35.61 4.17
3199 3663 2.430828 GTTAAGCAACGTATCCGCAC 57.569 50.000 0.00 0.00 37.70 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.759782 ACAGTAAAGTAGCAATTCTGGTATAGT 58.240 33.333 0.00 0.00 37.82 2.12
1 2 9.601217 AACAGTAAAGTAGCAATTCTGGTATAG 57.399 33.333 0.00 0.00 37.82 1.31
3 4 8.100791 TCAACAGTAAAGTAGCAATTCTGGTAT 58.899 33.333 0.00 0.00 37.82 2.73
5 6 6.296026 TCAACAGTAAAGTAGCAATTCTGGT 58.704 36.000 0.00 0.00 37.06 4.00
6 7 6.801539 TCAACAGTAAAGTAGCAATTCTGG 57.198 37.500 0.00 0.00 0.00 3.86
7 8 7.272084 GCAATCAACAGTAAAGTAGCAATTCTG 59.728 37.037 0.00 0.00 0.00 3.02
8 9 7.040478 TGCAATCAACAGTAAAGTAGCAATTCT 60.040 33.333 0.00 0.00 0.00 2.40
9 10 7.083858 TGCAATCAACAGTAAAGTAGCAATTC 58.916 34.615 0.00 0.00 0.00 2.17
10 11 6.980593 TGCAATCAACAGTAAAGTAGCAATT 58.019 32.000 0.00 0.00 0.00 2.32
11 12 6.573664 TGCAATCAACAGTAAAGTAGCAAT 57.426 33.333 0.00 0.00 0.00 3.56
12 13 6.384258 TTGCAATCAACAGTAAAGTAGCAA 57.616 33.333 0.00 0.00 36.10 3.91
13 14 6.183360 TGTTTGCAATCAACAGTAAAGTAGCA 60.183 34.615 7.74 0.00 30.75 3.49
14 15 6.142320 GTGTTTGCAATCAACAGTAAAGTAGC 59.858 38.462 11.67 0.00 30.75 3.58
15 16 6.356977 CGTGTTTGCAATCAACAGTAAAGTAG 59.643 38.462 11.67 0.00 30.75 2.57
16 17 6.195868 CGTGTTTGCAATCAACAGTAAAGTA 58.804 36.000 11.67 0.00 30.75 2.24
17 18 5.034152 CGTGTTTGCAATCAACAGTAAAGT 58.966 37.500 11.67 0.00 30.75 2.66
18 19 4.085619 GCGTGTTTGCAATCAACAGTAAAG 60.086 41.667 11.67 0.00 34.15 1.85
19 20 3.794028 GCGTGTTTGCAATCAACAGTAAA 59.206 39.130 11.67 0.00 34.15 2.01
20 21 3.066064 AGCGTGTTTGCAATCAACAGTAA 59.934 39.130 11.67 0.00 37.31 2.24
21 22 2.616376 AGCGTGTTTGCAATCAACAGTA 59.384 40.909 11.67 0.00 37.31 2.74
22 23 1.405105 AGCGTGTTTGCAATCAACAGT 59.595 42.857 11.67 0.00 37.31 3.55
23 24 2.124011 AGCGTGTTTGCAATCAACAG 57.876 45.000 11.67 7.86 37.31 3.16
24 25 3.699779 TTAGCGTGTTTGCAATCAACA 57.300 38.095 11.67 5.06 37.31 3.33
25 26 4.679197 TGATTTAGCGTGTTTGCAATCAAC 59.321 37.500 11.67 7.56 35.55 3.18
26 27 4.864633 TGATTTAGCGTGTTTGCAATCAA 58.135 34.783 11.67 0.00 35.55 2.57
27 28 4.495911 TGATTTAGCGTGTTTGCAATCA 57.504 36.364 6.10 6.10 35.89 2.57
28 29 4.266029 CCATGATTTAGCGTGTTTGCAATC 59.734 41.667 0.00 0.00 37.31 2.67
29 30 4.175516 CCATGATTTAGCGTGTTTGCAAT 58.824 39.130 0.00 0.00 37.31 3.56
30 31 3.005261 ACCATGATTTAGCGTGTTTGCAA 59.995 39.130 0.00 0.00 37.31 4.08
31 32 2.556189 ACCATGATTTAGCGTGTTTGCA 59.444 40.909 0.00 0.00 37.31 4.08
32 33 3.171277 GACCATGATTTAGCGTGTTTGC 58.829 45.455 0.00 0.00 0.00 3.68
33 34 3.727673 CGGACCATGATTTAGCGTGTTTG 60.728 47.826 0.00 0.00 0.00 2.93
34 35 2.418628 CGGACCATGATTTAGCGTGTTT 59.581 45.455 0.00 0.00 0.00 2.83
35 36 2.006888 CGGACCATGATTTAGCGTGTT 58.993 47.619 0.00 0.00 0.00 3.32
36 37 1.651987 CGGACCATGATTTAGCGTGT 58.348 50.000 0.00 0.00 0.00 4.49
37 38 0.304705 GCGGACCATGATTTAGCGTG 59.695 55.000 0.00 0.00 0.00 5.34
38 39 0.178068 AGCGGACCATGATTTAGCGT 59.822 50.000 0.00 0.00 0.00 5.07
39 40 2.148916 TAGCGGACCATGATTTAGCG 57.851 50.000 0.00 0.00 0.00 4.26
40 41 3.003378 GGTTTAGCGGACCATGATTTAGC 59.997 47.826 0.00 0.00 37.14 3.09
41 42 3.564225 GGGTTTAGCGGACCATGATTTAG 59.436 47.826 0.00 0.00 38.98 1.85
42 43 3.547746 GGGTTTAGCGGACCATGATTTA 58.452 45.455 0.00 0.00 38.98 1.40
43 44 2.375146 GGGTTTAGCGGACCATGATTT 58.625 47.619 0.00 0.00 38.98 2.17
44 45 1.745827 CGGGTTTAGCGGACCATGATT 60.746 52.381 0.00 0.00 38.98 2.57
45 46 0.179056 CGGGTTTAGCGGACCATGAT 60.179 55.000 0.00 0.00 38.98 2.45
46 47 1.219664 CGGGTTTAGCGGACCATGA 59.780 57.895 0.00 0.00 38.98 3.07
47 48 1.817941 CCGGGTTTAGCGGACCATG 60.818 63.158 0.00 0.00 38.98 3.66
48 49 1.555477 TTCCGGGTTTAGCGGACCAT 61.555 55.000 0.00 0.00 38.98 3.55
49 50 2.215625 TTCCGGGTTTAGCGGACCA 61.216 57.895 0.00 0.00 38.98 4.02
50 51 1.742880 GTTCCGGGTTTAGCGGACC 60.743 63.158 0.00 0.00 36.41 4.46
51 52 1.004679 TGTTCCGGGTTTAGCGGAC 60.005 57.895 0.00 0.00 0.00 4.79
52 53 1.294138 CTGTTCCGGGTTTAGCGGA 59.706 57.895 0.00 0.00 0.00 5.54
53 54 1.743995 CCTGTTCCGGGTTTAGCGG 60.744 63.158 0.00 0.00 0.00 5.52
54 55 2.396157 GCCTGTTCCGGGTTTAGCG 61.396 63.158 0.00 0.00 31.34 4.26
55 56 1.302993 TGCCTGTTCCGGGTTTAGC 60.303 57.895 0.00 0.00 31.34 3.09
56 57 0.958876 GGTGCCTGTTCCGGGTTTAG 60.959 60.000 0.00 0.00 31.34 1.85
57 58 1.073548 GGTGCCTGTTCCGGGTTTA 59.926 57.895 0.00 0.00 31.34 2.01
58 59 2.203437 GGTGCCTGTTCCGGGTTT 60.203 61.111 0.00 0.00 31.34 3.27
59 60 4.636435 CGGTGCCTGTTCCGGGTT 62.636 66.667 0.00 0.00 42.61 4.11
62 63 3.385749 ATAGCGGTGCCTGTTCCGG 62.386 63.158 0.00 0.00 45.85 5.14
64 65 1.883084 CGATAGCGGTGCCTGTTCC 60.883 63.158 0.00 0.00 0.00 3.62
65 66 0.249489 ATCGATAGCGGTGCCTGTTC 60.249 55.000 0.00 0.00 38.28 3.18
66 67 0.178068 AATCGATAGCGGTGCCTGTT 59.822 50.000 0.00 0.00 38.28 3.16
67 68 0.178068 AAATCGATAGCGGTGCCTGT 59.822 50.000 0.00 0.00 38.28 4.00
68 69 1.299541 AAAATCGATAGCGGTGCCTG 58.700 50.000 0.00 0.00 38.28 4.85
69 70 2.038387 AAAAATCGATAGCGGTGCCT 57.962 45.000 0.00 0.00 38.28 4.75
86 87 5.465935 CATGGCGGTCTTTTTAGCTAAAAA 58.534 37.500 32.02 32.02 41.36 1.94
87 88 4.617298 GCATGGCGGTCTTTTTAGCTAAAA 60.617 41.667 24.42 24.42 34.64 1.52
88 89 3.119637 GCATGGCGGTCTTTTTAGCTAAA 60.120 43.478 14.96 14.96 0.00 1.85
89 90 2.422127 GCATGGCGGTCTTTTTAGCTAA 59.578 45.455 0.86 0.86 0.00 3.09
90 91 2.014128 GCATGGCGGTCTTTTTAGCTA 58.986 47.619 0.00 0.00 0.00 3.32
91 92 0.811281 GCATGGCGGTCTTTTTAGCT 59.189 50.000 0.00 0.00 0.00 3.32
92 93 0.525761 TGCATGGCGGTCTTTTTAGC 59.474 50.000 0.00 0.00 0.00 3.09
93 94 3.508744 ATTGCATGGCGGTCTTTTTAG 57.491 42.857 0.00 0.00 0.00 1.85
94 95 3.583806 CAATTGCATGGCGGTCTTTTTA 58.416 40.909 0.00 0.00 0.00 1.52
95 96 2.415776 CAATTGCATGGCGGTCTTTTT 58.584 42.857 0.00 0.00 0.00 1.94
96 97 1.338011 CCAATTGCATGGCGGTCTTTT 60.338 47.619 0.00 0.00 32.78 2.27
97 98 0.247185 CCAATTGCATGGCGGTCTTT 59.753 50.000 0.00 0.00 32.78 2.52
98 99 0.611618 TCCAATTGCATGGCGGTCTT 60.612 50.000 0.00 0.00 40.46 3.01
99 100 1.001020 TCCAATTGCATGGCGGTCT 60.001 52.632 0.00 0.00 40.46 3.85
100 101 1.139520 GTCCAATTGCATGGCGGTC 59.860 57.895 0.00 0.00 40.46 4.79
101 102 2.350458 GGTCCAATTGCATGGCGGT 61.350 57.895 0.00 0.00 40.46 5.68
102 103 2.287457 CTGGTCCAATTGCATGGCGG 62.287 60.000 0.00 0.00 40.46 6.13
103 104 1.140161 CTGGTCCAATTGCATGGCG 59.860 57.895 0.00 0.00 40.46 5.69
104 105 0.896923 TTCTGGTCCAATTGCATGGC 59.103 50.000 0.00 0.00 40.46 4.40
105 106 3.681593 TTTTCTGGTCCAATTGCATGG 57.318 42.857 0.00 0.00 42.12 3.66
137 138 1.570347 TTCATGCGAAAACCGACCGG 61.570 55.000 6.94 6.94 41.76 5.28
138 139 0.452122 GTTCATGCGAAAACCGACCG 60.452 55.000 0.00 0.00 41.76 4.79
139 140 0.109919 GGTTCATGCGAAAACCGACC 60.110 55.000 0.00 0.00 41.76 4.79
140 141 0.589223 TGGTTCATGCGAAAACCGAC 59.411 50.000 8.93 0.00 46.49 4.79
141 142 0.871722 CTGGTTCATGCGAAAACCGA 59.128 50.000 8.93 0.04 46.49 4.69
142 143 0.871722 TCTGGTTCATGCGAAAACCG 59.128 50.000 8.93 5.12 46.49 4.44
143 144 1.200020 CCTCTGGTTCATGCGAAAACC 59.800 52.381 7.02 7.02 44.29 3.27
144 145 1.880027 ACCTCTGGTTCATGCGAAAAC 59.120 47.619 0.00 0.00 27.29 2.43
145 146 2.270352 ACCTCTGGTTCATGCGAAAA 57.730 45.000 0.00 0.00 27.29 2.29
146 147 3.627395 ATACCTCTGGTTCATGCGAAA 57.373 42.857 0.00 0.00 37.09 3.46
147 148 4.746535 TTATACCTCTGGTTCATGCGAA 57.253 40.909 0.00 0.00 37.09 4.70
148 149 4.746535 TTTATACCTCTGGTTCATGCGA 57.253 40.909 0.00 0.00 37.09 5.10
149 150 4.035208 GGTTTTATACCTCTGGTTCATGCG 59.965 45.833 0.00 0.00 44.10 4.73
150 151 4.035208 CGGTTTTATACCTCTGGTTCATGC 59.965 45.833 0.00 0.00 45.40 4.06
151 152 4.574828 CCGGTTTTATACCTCTGGTTCATG 59.425 45.833 0.00 0.00 45.40 3.07
152 153 4.777463 CCGGTTTTATACCTCTGGTTCAT 58.223 43.478 0.00 0.00 45.40 2.57
153 154 3.620472 GCCGGTTTTATACCTCTGGTTCA 60.620 47.826 1.90 0.00 45.40 3.18
154 155 2.941064 GCCGGTTTTATACCTCTGGTTC 59.059 50.000 1.90 0.00 45.40 3.62
155 156 2.306512 TGCCGGTTTTATACCTCTGGTT 59.693 45.455 1.90 0.00 45.40 3.67
156 157 1.910671 TGCCGGTTTTATACCTCTGGT 59.089 47.619 1.90 0.00 45.40 4.00
157 158 2.093128 ACTGCCGGTTTTATACCTCTGG 60.093 50.000 1.90 0.00 45.40 3.86
158 159 3.261981 ACTGCCGGTTTTATACCTCTG 57.738 47.619 1.90 0.00 45.40 3.35
159 160 3.262405 TCAACTGCCGGTTTTATACCTCT 59.738 43.478 1.90 0.00 45.40 3.69
160 161 3.602483 TCAACTGCCGGTTTTATACCTC 58.398 45.455 1.90 0.00 45.40 3.85
161 162 3.706600 TCAACTGCCGGTTTTATACCT 57.293 42.857 1.90 0.00 45.40 3.08
162 163 3.119743 GGTTCAACTGCCGGTTTTATACC 60.120 47.826 1.90 0.00 44.03 2.73
163 164 3.502979 TGGTTCAACTGCCGGTTTTATAC 59.497 43.478 1.90 0.00 35.74 1.47
164 165 3.752665 TGGTTCAACTGCCGGTTTTATA 58.247 40.909 1.90 0.00 35.74 0.98
165 166 2.556622 CTGGTTCAACTGCCGGTTTTAT 59.443 45.455 1.90 0.00 35.74 1.40
166 167 1.950909 CTGGTTCAACTGCCGGTTTTA 59.049 47.619 1.90 0.00 35.74 1.52
167 168 0.744281 CTGGTTCAACTGCCGGTTTT 59.256 50.000 1.90 0.00 35.74 2.43
168 169 0.395173 ACTGGTTCAACTGCCGGTTT 60.395 50.000 1.90 0.00 41.24 3.27
169 170 1.101049 CACTGGTTCAACTGCCGGTT 61.101 55.000 1.90 0.00 42.05 4.44
170 171 1.525995 CACTGGTTCAACTGCCGGT 60.526 57.895 1.90 0.00 44.57 5.28
171 172 2.260869 CCACTGGTTCAACTGCCGG 61.261 63.158 0.00 0.00 37.18 6.13
172 173 2.908073 GCCACTGGTTCAACTGCCG 61.908 63.158 0.00 0.00 0.00 5.69
173 174 1.181098 ATGCCACTGGTTCAACTGCC 61.181 55.000 0.00 0.00 0.00 4.85
174 175 0.038892 CATGCCACTGGTTCAACTGC 60.039 55.000 0.00 0.00 0.00 4.40
175 176 0.038892 GCATGCCACTGGTTCAACTG 60.039 55.000 6.36 0.00 0.00 3.16
176 177 0.467844 TGCATGCCACTGGTTCAACT 60.468 50.000 16.68 0.00 0.00 3.16
177 178 0.318955 GTGCATGCCACTGGTTCAAC 60.319 55.000 16.68 0.00 41.35 3.18
178 179 0.754587 TGTGCATGCCACTGGTTCAA 60.755 50.000 16.68 0.00 44.92 2.69
179 180 0.754587 TTGTGCATGCCACTGGTTCA 60.755 50.000 16.68 0.00 44.92 3.18
180 181 0.388659 TTTGTGCATGCCACTGGTTC 59.611 50.000 16.68 0.00 44.92 3.62
181 182 1.050204 ATTTGTGCATGCCACTGGTT 58.950 45.000 16.68 0.00 44.92 3.67
182 183 1.921982 TATTTGTGCATGCCACTGGT 58.078 45.000 16.68 0.00 44.92 4.00
183 184 3.884693 TCTATATTTGTGCATGCCACTGG 59.115 43.478 16.68 0.00 44.92 4.00
184 185 5.503662 TTCTATATTTGTGCATGCCACTG 57.496 39.130 16.68 0.00 44.92 3.66
185 186 6.153340 ACTTTTCTATATTTGTGCATGCCACT 59.847 34.615 16.68 5.60 44.92 4.00
186 187 6.332630 ACTTTTCTATATTTGTGCATGCCAC 58.667 36.000 16.68 13.73 44.90 5.01
187 188 6.528537 ACTTTTCTATATTTGTGCATGCCA 57.471 33.333 16.68 10.08 0.00 4.92
188 189 7.435192 GGTTACTTTTCTATATTTGTGCATGCC 59.565 37.037 16.68 7.25 0.00 4.40
189 190 8.190784 AGGTTACTTTTCTATATTTGTGCATGC 58.809 33.333 11.82 11.82 0.00 4.06
190 191 9.507280 CAGGTTACTTTTCTATATTTGTGCATG 57.493 33.333 0.00 0.00 0.00 4.06
191 192 9.243105 ACAGGTTACTTTTCTATATTTGTGCAT 57.757 29.630 0.00 0.00 0.00 3.96
192 193 8.511321 CACAGGTTACTTTTCTATATTTGTGCA 58.489 33.333 0.00 0.00 0.00 4.57
193 194 8.512138 ACACAGGTTACTTTTCTATATTTGTGC 58.488 33.333 0.00 0.00 35.66 4.57
195 196 9.787435 TGACACAGGTTACTTTTCTATATTTGT 57.213 29.630 0.00 0.00 0.00 2.83
200 201 9.268268 CACTTTGACACAGGTTACTTTTCTATA 57.732 33.333 0.00 0.00 0.00 1.31
201 202 7.228706 CCACTTTGACACAGGTTACTTTTCTAT 59.771 37.037 0.00 0.00 0.00 1.98
202 203 6.540914 CCACTTTGACACAGGTTACTTTTCTA 59.459 38.462 0.00 0.00 0.00 2.10
203 204 5.357032 CCACTTTGACACAGGTTACTTTTCT 59.643 40.000 0.00 0.00 0.00 2.52
204 205 5.355910 TCCACTTTGACACAGGTTACTTTTC 59.644 40.000 0.00 0.00 0.00 2.29
205 206 5.258051 TCCACTTTGACACAGGTTACTTTT 58.742 37.500 0.00 0.00 0.00 2.27
206 207 4.850680 TCCACTTTGACACAGGTTACTTT 58.149 39.130 0.00 0.00 0.00 2.66
207 208 4.497291 TCCACTTTGACACAGGTTACTT 57.503 40.909 0.00 0.00 0.00 2.24
208 209 4.706842 ATCCACTTTGACACAGGTTACT 57.293 40.909 0.00 0.00 0.00 2.24
209 210 5.298276 TCAAATCCACTTTGACACAGGTTAC 59.702 40.000 0.00 0.00 46.45 2.50
210 211 5.441500 TCAAATCCACTTTGACACAGGTTA 58.558 37.500 0.00 0.00 46.45 2.85
211 212 4.277476 TCAAATCCACTTTGACACAGGTT 58.723 39.130 0.00 0.00 46.45 3.50
212 213 3.897239 TCAAATCCACTTTGACACAGGT 58.103 40.909 0.00 0.00 46.45 4.00
230 231 9.662947 CACATATATCTAGCATCTTGGATTCAA 57.337 33.333 0.00 0.00 0.00 2.69
231 232 8.819845 ACACATATATCTAGCATCTTGGATTCA 58.180 33.333 0.00 0.00 0.00 2.57
232 233 9.096160 CACACATATATCTAGCATCTTGGATTC 57.904 37.037 0.00 0.00 0.00 2.52
233 234 8.600668 ACACACATATATCTAGCATCTTGGATT 58.399 33.333 0.00 0.00 0.00 3.01
234 235 8.143673 ACACACATATATCTAGCATCTTGGAT 57.856 34.615 0.00 0.00 0.00 3.41
235 236 7.544804 ACACACATATATCTAGCATCTTGGA 57.455 36.000 0.00 0.00 0.00 3.53
236 237 9.363763 CTTACACACATATATCTAGCATCTTGG 57.636 37.037 0.00 0.00 0.00 3.61
237 238 9.920133 ACTTACACACATATATCTAGCATCTTG 57.080 33.333 0.00 0.00 0.00 3.02
239 240 9.920133 CAACTTACACACATATATCTAGCATCT 57.080 33.333 0.00 0.00 0.00 2.90
240 241 9.698309 ACAACTTACACACATATATCTAGCATC 57.302 33.333 0.00 0.00 0.00 3.91
243 244 9.130312 GCTACAACTTACACACATATATCTAGC 57.870 37.037 0.00 0.00 0.00 3.42
248 249 9.109393 CCAAAGCTACAACTTACACACATATAT 57.891 33.333 0.00 0.00 0.00 0.86
249 250 7.065324 GCCAAAGCTACAACTTACACACATATA 59.935 37.037 0.00 0.00 35.50 0.86
250 251 6.128007 GCCAAAGCTACAACTTACACACATAT 60.128 38.462 0.00 0.00 35.50 1.78
251 252 5.180492 GCCAAAGCTACAACTTACACACATA 59.820 40.000 0.00 0.00 35.50 2.29
252 253 4.023193 GCCAAAGCTACAACTTACACACAT 60.023 41.667 0.00 0.00 35.50 3.21
253 254 3.314080 GCCAAAGCTACAACTTACACACA 59.686 43.478 0.00 0.00 35.50 3.72
254 255 3.314080 TGCCAAAGCTACAACTTACACAC 59.686 43.478 0.00 0.00 40.80 3.82
255 256 3.314080 GTGCCAAAGCTACAACTTACACA 59.686 43.478 0.00 0.00 40.80 3.72
256 257 3.564225 AGTGCCAAAGCTACAACTTACAC 59.436 43.478 0.00 0.00 40.80 2.90
257 258 3.815809 AGTGCCAAAGCTACAACTTACA 58.184 40.909 0.00 0.00 40.80 2.41
258 259 7.413767 GGTTATAGTGCCAAAGCTACAACTTAC 60.414 40.741 0.00 0.00 40.80 2.34
259 260 6.596497 GGTTATAGTGCCAAAGCTACAACTTA 59.404 38.462 0.00 0.00 40.80 2.24
260 261 5.414765 GGTTATAGTGCCAAAGCTACAACTT 59.585 40.000 0.00 0.00 40.80 2.66
261 262 4.941873 GGTTATAGTGCCAAAGCTACAACT 59.058 41.667 0.00 0.00 40.80 3.16
262 263 4.698304 TGGTTATAGTGCCAAAGCTACAAC 59.302 41.667 0.00 0.00 40.80 3.32
263 264 4.912586 TGGTTATAGTGCCAAAGCTACAA 58.087 39.130 0.00 0.00 40.80 2.41
264 265 4.561500 TGGTTATAGTGCCAAAGCTACA 57.438 40.909 0.00 0.00 40.80 2.74
265 266 7.308589 CCAATATGGTTATAGTGCCAAAGCTAC 60.309 40.741 0.00 0.00 38.38 3.58
266 267 6.714810 CCAATATGGTTATAGTGCCAAAGCTA 59.285 38.462 0.00 0.00 38.38 3.32
267 268 5.536161 CCAATATGGTTATAGTGCCAAAGCT 59.464 40.000 0.00 0.00 38.38 3.74
268 269 5.772521 CCAATATGGTTATAGTGCCAAAGC 58.227 41.667 0.00 0.00 38.38 3.51
269 270 5.536161 AGCCAATATGGTTATAGTGCCAAAG 59.464 40.000 0.00 0.00 40.46 2.77
270 271 5.454062 AGCCAATATGGTTATAGTGCCAAA 58.546 37.500 0.00 0.00 40.46 3.28
271 272 5.060427 AGCCAATATGGTTATAGTGCCAA 57.940 39.130 0.00 0.00 40.46 4.52
272 273 4.722526 AGCCAATATGGTTATAGTGCCA 57.277 40.909 0.00 0.00 40.46 4.92
273 274 5.823045 GGATAGCCAATATGGTTATAGTGCC 59.177 44.000 5.83 0.75 42.83 5.01
274 275 6.414732 TGGATAGCCAATATGGTTATAGTGC 58.585 40.000 0.00 0.00 42.83 4.40
289 290 4.746535 TGATACGAAAGTTGGATAGCCA 57.253 40.909 0.00 0.00 46.40 4.75
290 291 6.619801 ATTTGATACGAAAGTTGGATAGCC 57.380 37.500 0.00 0.00 46.40 3.93
291 292 9.997482 TTAAATTTGATACGAAAGTTGGATAGC 57.003 29.630 0.00 0.00 46.40 2.97
335 336 9.605275 TGTACTAGTGTCGTACTAAATAGATGT 57.395 33.333 5.39 1.11 41.20 3.06
336 337 9.861138 GTGTACTAGTGTCGTACTAAATAGATG 57.139 37.037 5.39 0.00 41.20 2.90
337 338 8.759641 CGTGTACTAGTGTCGTACTAAATAGAT 58.240 37.037 5.39 0.00 41.20 1.98
338 339 7.222805 CCGTGTACTAGTGTCGTACTAAATAGA 59.777 40.741 5.39 0.00 41.20 1.98
339 340 7.222805 TCCGTGTACTAGTGTCGTACTAAATAG 59.777 40.741 5.39 0.00 41.20 1.73
340 341 7.039270 TCCGTGTACTAGTGTCGTACTAAATA 58.961 38.462 5.39 0.00 41.20 1.40
341 342 5.874810 TCCGTGTACTAGTGTCGTACTAAAT 59.125 40.000 5.39 0.11 41.20 1.40
342 343 5.234752 TCCGTGTACTAGTGTCGTACTAAA 58.765 41.667 5.39 0.00 41.20 1.85
343 344 4.816392 TCCGTGTACTAGTGTCGTACTAA 58.184 43.478 5.39 0.00 41.20 2.24
344 345 4.450082 TCCGTGTACTAGTGTCGTACTA 57.550 45.455 5.39 3.12 40.89 1.82
345 346 3.319137 TCCGTGTACTAGTGTCGTACT 57.681 47.619 5.39 1.17 43.56 2.73
346 347 4.404507 TTTCCGTGTACTAGTGTCGTAC 57.595 45.455 5.39 0.00 38.13 3.67
347 348 5.431420 TTTTTCCGTGTACTAGTGTCGTA 57.569 39.130 5.39 0.00 0.00 3.43
348 349 3.988379 TTTTCCGTGTACTAGTGTCGT 57.012 42.857 5.39 0.00 0.00 4.34
374 375 9.931210 CCGGTTACATTTCTGTTTTCTTATATC 57.069 33.333 0.00 0.00 36.79 1.63
375 376 8.403236 GCCGGTTACATTTCTGTTTTCTTATAT 58.597 33.333 1.90 0.00 36.79 0.86
376 377 7.413219 CGCCGGTTACATTTCTGTTTTCTTATA 60.413 37.037 1.90 0.00 36.79 0.98
377 378 6.617879 GCCGGTTACATTTCTGTTTTCTTAT 58.382 36.000 1.90 0.00 36.79 1.73
378 379 5.334260 CGCCGGTTACATTTCTGTTTTCTTA 60.334 40.000 1.90 0.00 36.79 2.10
379 380 4.555906 CGCCGGTTACATTTCTGTTTTCTT 60.556 41.667 1.90 0.00 36.79 2.52
380 381 3.058501 CGCCGGTTACATTTCTGTTTTCT 60.059 43.478 1.90 0.00 36.79 2.52
381 382 3.058777 TCGCCGGTTACATTTCTGTTTTC 60.059 43.478 1.90 0.00 36.79 2.29
382 383 2.879646 TCGCCGGTTACATTTCTGTTTT 59.120 40.909 1.90 0.00 36.79 2.43
383 384 2.496111 TCGCCGGTTACATTTCTGTTT 58.504 42.857 1.90 0.00 36.79 2.83
384 385 2.172851 TCGCCGGTTACATTTCTGTT 57.827 45.000 1.90 0.00 36.79 3.16
385 386 2.172851 TTCGCCGGTTACATTTCTGT 57.827 45.000 1.90 0.00 39.49 3.41
386 387 2.413634 GGTTTCGCCGGTTACATTTCTG 60.414 50.000 1.90 0.00 0.00 3.02
387 388 1.808343 GGTTTCGCCGGTTACATTTCT 59.192 47.619 1.90 0.00 0.00 2.52
388 389 2.251869 GGTTTCGCCGGTTACATTTC 57.748 50.000 1.90 0.00 0.00 2.17
408 409 2.094906 GGTTTTTACCAGTCGGATTGCC 60.095 50.000 0.00 0.00 35.59 4.52
409 410 2.817844 AGGTTTTTACCAGTCGGATTGC 59.182 45.455 0.00 0.00 35.59 3.56
410 411 3.818773 ACAGGTTTTTACCAGTCGGATTG 59.181 43.478 0.00 0.00 35.59 2.67
411 412 4.094830 ACAGGTTTTTACCAGTCGGATT 57.905 40.909 0.00 0.00 35.59 3.01
412 413 3.782656 ACAGGTTTTTACCAGTCGGAT 57.217 42.857 0.00 0.00 35.59 4.18
413 414 3.244181 GGTACAGGTTTTTACCAGTCGGA 60.244 47.826 0.00 0.00 38.14 4.55
414 415 3.069289 GGTACAGGTTTTTACCAGTCGG 58.931 50.000 0.00 0.00 38.14 4.79
415 416 2.733026 CGGTACAGGTTTTTACCAGTCG 59.267 50.000 0.00 0.00 38.14 4.18
416 417 3.069289 CCGGTACAGGTTTTTACCAGTC 58.931 50.000 3.54 0.00 38.14 3.51
417 418 2.811504 GCCGGTACAGGTTTTTACCAGT 60.812 50.000 13.86 0.00 38.14 4.00
418 419 1.808343 GCCGGTACAGGTTTTTACCAG 59.192 52.381 13.86 0.00 38.14 4.00
419 420 1.877258 CGCCGGTACAGGTTTTTACCA 60.877 52.381 13.86 0.00 38.14 3.25
420 421 0.798159 CGCCGGTACAGGTTTTTACC 59.202 55.000 13.86 0.00 35.32 2.85
421 422 0.798159 CCGCCGGTACAGGTTTTTAC 59.202 55.000 13.86 0.00 0.00 2.01
422 423 0.954938 GCCGCCGGTACAGGTTTTTA 60.955 55.000 13.86 0.00 0.00 1.52
423 424 2.263021 GCCGCCGGTACAGGTTTTT 61.263 57.895 13.86 0.00 0.00 1.94
424 425 2.670592 GCCGCCGGTACAGGTTTT 60.671 61.111 13.86 0.00 0.00 2.43
425 426 4.710167 GGCCGCCGGTACAGGTTT 62.710 66.667 13.86 0.00 0.00 3.27
439 440 1.095807 GTGATAGAACCGGCAAGGCC 61.096 60.000 0.00 0.00 46.52 5.19
440 441 0.392461 TGTGATAGAACCGGCAAGGC 60.392 55.000 0.00 0.00 46.52 4.35
442 443 1.066143 ACCTGTGATAGAACCGGCAAG 60.066 52.381 0.00 0.00 0.00 4.01
443 444 0.981183 ACCTGTGATAGAACCGGCAA 59.019 50.000 0.00 0.00 0.00 4.52
444 445 0.981183 AACCTGTGATAGAACCGGCA 59.019 50.000 0.00 0.00 0.00 5.69
445 446 1.653151 GAACCTGTGATAGAACCGGC 58.347 55.000 0.00 0.00 0.00 6.13
446 447 1.470979 CCGAACCTGTGATAGAACCGG 60.471 57.143 0.00 0.00 0.00 5.28
447 448 1.203994 ACCGAACCTGTGATAGAACCG 59.796 52.381 0.00 0.00 0.00 4.44
448 449 3.329929 AACCGAACCTGTGATAGAACC 57.670 47.619 0.00 0.00 0.00 3.62
449 450 5.684550 AAAAACCGAACCTGTGATAGAAC 57.315 39.130 0.00 0.00 0.00 3.01
468 469 9.832445 CAAGATACTAGGACCATAGCTTAAAAA 57.168 33.333 0.00 0.00 0.00 1.94
469 470 7.931948 GCAAGATACTAGGACCATAGCTTAAAA 59.068 37.037 0.00 0.00 0.00 1.52
470 471 7.290248 AGCAAGATACTAGGACCATAGCTTAAA 59.710 37.037 0.00 0.00 0.00 1.52
471 472 6.782988 AGCAAGATACTAGGACCATAGCTTAA 59.217 38.462 0.00 0.00 0.00 1.85
472 473 6.209589 CAGCAAGATACTAGGACCATAGCTTA 59.790 42.308 0.00 0.00 0.00 3.09
473 474 5.011533 CAGCAAGATACTAGGACCATAGCTT 59.988 44.000 0.00 0.00 0.00 3.74
474 475 4.526262 CAGCAAGATACTAGGACCATAGCT 59.474 45.833 0.00 0.00 0.00 3.32
475 476 4.815269 CAGCAAGATACTAGGACCATAGC 58.185 47.826 0.00 0.00 0.00 2.97
476 477 4.322349 GGCAGCAAGATACTAGGACCATAG 60.322 50.000 0.00 0.00 0.00 2.23
477 478 3.578716 GGCAGCAAGATACTAGGACCATA 59.421 47.826 0.00 0.00 0.00 2.74
478 479 2.370189 GGCAGCAAGATACTAGGACCAT 59.630 50.000 0.00 0.00 0.00 3.55
479 480 1.762957 GGCAGCAAGATACTAGGACCA 59.237 52.381 0.00 0.00 0.00 4.02
480 481 1.269831 CGGCAGCAAGATACTAGGACC 60.270 57.143 0.00 0.00 0.00 4.46
481 482 1.870167 GCGGCAGCAAGATACTAGGAC 60.870 57.143 3.18 0.00 44.35 3.85
482 483 0.389391 GCGGCAGCAAGATACTAGGA 59.611 55.000 3.18 0.00 44.35 2.94
483 484 2.906047 GCGGCAGCAAGATACTAGG 58.094 57.895 3.18 0.00 44.35 3.02
501 502 1.280746 CAGCCGAGTGCAACAACTG 59.719 57.895 0.00 0.00 44.83 3.16
502 503 1.893808 CCAGCCGAGTGCAACAACT 60.894 57.895 0.00 0.00 44.83 3.16
503 504 2.639286 CCAGCCGAGTGCAACAAC 59.361 61.111 0.00 0.00 44.83 3.32
504 505 2.594303 CCCAGCCGAGTGCAACAA 60.594 61.111 0.00 0.00 44.83 2.83
505 506 4.641645 CCCCAGCCGAGTGCAACA 62.642 66.667 0.00 0.00 44.83 3.33
506 507 4.643387 ACCCCAGCCGAGTGCAAC 62.643 66.667 0.00 0.00 44.83 4.17
507 508 4.329545 GACCCCAGCCGAGTGCAA 62.330 66.667 0.00 0.00 44.83 4.08
510 511 4.742201 CACGACCCCAGCCGAGTG 62.742 72.222 0.00 0.00 0.00 3.51
592 593 0.179020 CCTCTGTTCACTTGGCCACA 60.179 55.000 3.88 0.00 0.00 4.17
598 599 5.128499 ACTGATAGATCCCTCTGTTCACTTG 59.872 44.000 0.00 0.00 32.66 3.16
599 600 5.276440 ACTGATAGATCCCTCTGTTCACTT 58.724 41.667 0.00 0.00 32.66 3.16
622 623 6.630203 TTTCCTCTACTAATTGCCCACTAA 57.370 37.500 0.00 0.00 0.00 2.24
623 624 6.824958 ATTTCCTCTACTAATTGCCCACTA 57.175 37.500 0.00 0.00 0.00 2.74
624 625 5.717119 ATTTCCTCTACTAATTGCCCACT 57.283 39.130 0.00 0.00 0.00 4.00
627 853 6.016192 GCCTTAATTTCCTCTACTAATTGCCC 60.016 42.308 0.00 0.00 0.00 5.36
633 859 7.336931 CAGCAAAGCCTTAATTTCCTCTACTAA 59.663 37.037 0.00 0.00 0.00 2.24
639 865 4.460731 AGACAGCAAAGCCTTAATTTCCTC 59.539 41.667 0.00 0.00 0.00 3.71
642 868 5.106673 ACGTAGACAGCAAAGCCTTAATTTC 60.107 40.000 0.00 0.00 0.00 2.17
686 1087 2.004583 TCTTAAATCGACGCACCCAG 57.995 50.000 0.00 0.00 0.00 4.45
690 1091 4.769215 ACTTTGTTCTTAAATCGACGCAC 58.231 39.130 0.00 0.00 0.00 5.34
700 1101 4.033587 GGATATGCGCGACTTTGTTCTTAA 59.966 41.667 12.10 0.00 0.00 1.85
703 1113 1.933853 GGATATGCGCGACTTTGTTCT 59.066 47.619 12.10 0.00 0.00 3.01
716 1126 5.241662 CAACCCTTTCTAGCTAGGATATGC 58.758 45.833 20.58 0.00 33.13 3.14
731 1141 6.010219 ACATAATGACTTACAGCAACCCTTT 58.990 36.000 0.00 0.00 0.00 3.11
736 1146 9.893305 AAGTTTTACATAATGACTTACAGCAAC 57.107 29.630 0.00 0.00 0.00 4.17
749 1159 7.602265 GCCACATGAAACCAAGTTTTACATAAT 59.398 33.333 0.00 0.00 35.77 1.28
778 1188 6.654161 GGTAATCTCCGAGCTAATACACTCTA 59.346 42.308 0.00 0.00 0.00 2.43
779 1189 5.474189 GGTAATCTCCGAGCTAATACACTCT 59.526 44.000 0.00 0.00 0.00 3.24
780 1190 5.701855 GGTAATCTCCGAGCTAATACACTC 58.298 45.833 0.00 0.00 0.00 3.51
814 1224 8.586273 CGTTGCCATTTTATTCAAAGTTCATAG 58.414 33.333 0.00 0.00 0.00 2.23
816 1226 6.928492 ACGTTGCCATTTTATTCAAAGTTCAT 59.072 30.769 0.00 0.00 29.46 2.57
844 1254 6.067217 TCCTATCTCTTTTTCCTTTGAGGG 57.933 41.667 0.00 0.00 35.59 4.30
860 1270 8.778358 GCGTTTCAAATTGATCTAATCCTATCT 58.222 33.333 0.00 0.00 0.00 1.98
896 1306 5.132502 TCAGTGTTTCAAACTCCATGTCAT 58.867 37.500 1.10 0.00 0.00 3.06
904 1314 4.970003 CCGTTGATTCAGTGTTTCAAACTC 59.030 41.667 1.10 0.00 31.66 3.01
915 1325 3.814577 CGGTCTCCGTTGATTCAGT 57.185 52.632 0.00 0.00 42.73 3.41
933 1343 4.487412 AATCGTCGTCCGGCCGTC 62.487 66.667 26.12 15.71 37.11 4.79
937 1347 3.554692 CAGCAATCGTCGTCCGGC 61.555 66.667 0.00 0.00 37.11 6.13
938 1348 2.885644 CCAGCAATCGTCGTCCGG 60.886 66.667 0.00 0.00 37.11 5.14
940 1350 0.462047 AATCCCAGCAATCGTCGTCC 60.462 55.000 0.00 0.00 0.00 4.79
941 1351 2.128035 CTAATCCCAGCAATCGTCGTC 58.872 52.381 0.00 0.00 0.00 4.20
942 1352 1.754803 TCTAATCCCAGCAATCGTCGT 59.245 47.619 0.00 0.00 0.00 4.34
988 1398 7.416664 GGGTTGAATATATAGTATACCCGCGAA 60.417 40.741 8.23 0.00 35.10 4.70
994 1404 9.263446 TGGTCAGGGTTGAATATATAGTATACC 57.737 37.037 0.00 5.17 34.49 2.73
998 1408 7.005902 TCGTGGTCAGGGTTGAATATATAGTA 58.994 38.462 0.00 0.00 34.49 1.82
999 1409 5.836898 TCGTGGTCAGGGTTGAATATATAGT 59.163 40.000 0.00 0.00 34.49 2.12
1000 1410 6.157211 GTCGTGGTCAGGGTTGAATATATAG 58.843 44.000 0.00 0.00 34.49 1.31
1022 1441 1.622232 GCTGTTTAGGTACGTCGGTC 58.378 55.000 0.00 0.00 0.00 4.79
1024 1443 0.459063 GGGCTGTTTAGGTACGTCGG 60.459 60.000 0.00 0.00 0.00 4.79
1029 1448 1.537562 CGATCCGGGCTGTTTAGGTAC 60.538 57.143 0.00 0.00 0.00 3.34
1062 1487 3.691342 CGTCGGCAACAGAGGGGA 61.691 66.667 0.00 0.00 0.00 4.81
1718 2143 3.319198 GAGGCCCTCCAACCACGA 61.319 66.667 0.00 0.00 33.74 4.35
1871 2314 2.103538 CACATCGTACGACCCCCG 59.896 66.667 22.14 9.32 45.44 5.73
1885 2328 4.908687 AACAGCCGCAGCGTCACA 62.909 61.111 15.05 0.00 46.67 3.58
2060 2503 1.304381 GCAATCTCAACCCCCTGCA 60.304 57.895 0.00 0.00 0.00 4.41
2069 2512 3.118261 CCTAGGTTAGGCAGCAATCTCAA 60.118 47.826 0.00 0.00 39.48 3.02
2091 2534 3.182572 CCTTATCGCGCTCTGTATGTTTC 59.817 47.826 5.56 0.00 0.00 2.78
2269 2712 5.644636 TGTCTTTTCAGTTTTGTTAGGTCGT 59.355 36.000 0.00 0.00 0.00 4.34
2276 2719 5.643379 TCTGCTGTCTTTTCAGTTTTGTT 57.357 34.783 0.00 0.00 37.70 2.83
2348 2791 5.268387 AGCTCAGAGGATTCTTCAGTCTTA 58.732 41.667 0.00 0.00 0.00 2.10
2398 2841 2.418083 GGCTGCTATGGTGTTGCCC 61.418 63.158 0.00 0.00 36.04 5.36
2403 2846 2.372264 CTTTGATGGCTGCTATGGTGT 58.628 47.619 2.27 0.00 0.00 4.16
2418 2861 3.263170 TGATCCGTCATTTCCTCCTTTGA 59.737 43.478 0.00 0.00 0.00 2.69
2524 2967 3.758023 TCTGATTCATTCAACGGCAATGT 59.242 39.130 0.00 0.00 32.78 2.71
2561 3004 0.167470 GGAGTTCGATGACGTGTCGA 59.833 55.000 16.08 16.08 45.39 4.20
2562 3005 0.109919 TGGAGTTCGATGACGTGTCG 60.110 55.000 12.36 12.36 40.69 4.35
2780 3225 4.451150 GCGGCATCCTCGTGGTGA 62.451 66.667 2.99 0.00 34.23 4.02
2841 3298 2.343101 CCAACAAGACGATCCGCTTTA 58.657 47.619 0.00 0.00 0.00 1.85
2856 3313 4.934797 AATCTTCAGATCCTTCCCAACA 57.065 40.909 0.00 0.00 32.75 3.33
2966 3427 4.545706 GGTCGCCGGATCCATGCA 62.546 66.667 19.97 0.00 0.00 3.96
2998 3459 4.555348 CATGCATGCATGTACACATACA 57.445 40.909 40.30 14.20 46.20 2.29
3054 3518 7.082602 CGTACCATAATGTATGTAGTCTGACC 58.917 42.308 3.76 0.00 34.36 4.02
3094 3558 6.202570 GCACTATACAGTCGCTACTAAGTACT 59.797 42.308 0.00 0.00 33.48 2.73
3095 3559 6.202570 AGCACTATACAGTCGCTACTAAGTAC 59.797 42.308 0.00 0.00 37.37 2.73
3096 3560 6.202379 CAGCACTATACAGTCGCTACTAAGTA 59.798 42.308 0.00 0.00 37.17 2.24
3097 3561 5.007823 CAGCACTATACAGTCGCTACTAAGT 59.992 44.000 0.00 0.00 37.17 2.24
3098 3562 5.236695 TCAGCACTATACAGTCGCTACTAAG 59.763 44.000 0.00 0.00 37.17 2.18
3108 3572 5.066593 TCGATCAGATCAGCACTATACAGT 58.933 41.667 11.12 0.00 34.42 3.55
3151 3615 2.609459 CGACTGGACATTAGCACAATCC 59.391 50.000 0.00 0.00 0.00 3.01
3152 3616 3.307242 GTCGACTGGACATTAGCACAATC 59.693 47.826 8.70 0.00 45.36 2.67
3153 3617 3.262420 GTCGACTGGACATTAGCACAAT 58.738 45.455 8.70 0.00 45.36 2.71
3154 3618 2.683968 GTCGACTGGACATTAGCACAA 58.316 47.619 8.70 0.00 45.36 3.33
3155 3619 2.363788 GTCGACTGGACATTAGCACA 57.636 50.000 8.70 0.00 45.36 4.57
3167 3631 1.335597 TGCTTAACGTCCAGTCGACTG 60.336 52.381 33.87 33.87 43.40 3.51
3168 3632 0.956633 TGCTTAACGTCCAGTCGACT 59.043 50.000 13.58 13.58 39.56 4.18
3169 3633 1.454653 GTTGCTTAACGTCCAGTCGAC 59.545 52.381 7.70 7.70 38.21 4.20
3170 3634 1.774639 GTTGCTTAACGTCCAGTCGA 58.225 50.000 0.00 0.00 34.70 4.20
3171 3635 0.433492 CGTTGCTTAACGTCCAGTCG 59.567 55.000 4.55 0.00 40.94 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.