Multiple sequence alignment - TraesCS2D01G483200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G483200 chr2D 100.000 2615 0 0 1 2615 585077794 585080408 0.000000e+00 4830.0
1 TraesCS2D01G483200 chr2B 86.826 1761 123 51 665 2348 705687753 705689481 0.000000e+00 1866.0
2 TraesCS2D01G483200 chr2B 87.135 342 20 15 166 487 705687429 705687766 1.480000e-97 366.0
3 TraesCS2D01G483200 chr2B 76.897 290 59 6 1241 1527 697439151 697439435 9.690000e-35 158.0
4 TraesCS2D01G483200 chr2A 87.798 1008 68 22 760 1725 719286942 719287936 0.000000e+00 1129.0
5 TraesCS2D01G483200 chr2A 90.684 526 25 16 1813 2314 719288310 719288835 0.000000e+00 678.0
6 TraesCS2D01G483200 chr2A 83.434 495 70 4 1178 1663 683138673 683139164 1.430000e-122 449.0
7 TraesCS2D01G483200 chr2A 89.950 199 16 2 478 673 631865130 631864933 1.200000e-63 254.0
8 TraesCS2D01G483200 chr2A 77.936 281 50 10 1252 1527 717167700 717167973 5.790000e-37 165.0
9 TraesCS2D01G483200 chr5A 91.371 197 12 3 480 672 18658779 18658584 5.550000e-67 265.0
10 TraesCS2D01G483200 chr3D 92.063 189 11 2 484 669 528183440 528183627 2.000000e-66 263.0
11 TraesCS2D01G483200 chr3A 90.196 204 15 3 473 672 68866471 68866673 7.180000e-66 261.0
12 TraesCS2D01G483200 chr3A 91.534 189 12 2 484 669 9970146 9970333 9.290000e-65 257.0
13 TraesCS2D01G483200 chr4D 90.452 199 15 2 488 683 164876748 164876945 2.580000e-65 259.0
14 TraesCS2D01G483200 chr4D 91.935 186 12 1 487 669 416425050 416425235 9.290000e-65 257.0
15 TraesCS2D01G483200 chrUn 91.579 190 11 2 484 670 30689234 30689421 9.290000e-65 257.0
16 TraesCS2D01G483200 chr7A 91.534 189 12 2 484 669 51360557 51360370 9.290000e-65 257.0
17 TraesCS2D01G483200 chr5D 84.259 108 11 6 2504 2606 447965086 447965192 1.660000e-17 100.0
18 TraesCS2D01G483200 chr7D 83.019 106 15 3 2504 2606 69156902 69157007 2.770000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G483200 chr2D 585077794 585080408 2614 False 4830.0 4830 100.0000 1 2615 1 chr2D.!!$F1 2614
1 TraesCS2D01G483200 chr2B 705687429 705689481 2052 False 1116.0 1866 86.9805 166 2348 2 chr2B.!!$F2 2182
2 TraesCS2D01G483200 chr2A 719286942 719288835 1893 False 903.5 1129 89.2410 760 2314 2 chr2A.!!$F3 1554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 929 0.032678 ATAATCTCCAGACGGCGCTG 59.967 55.0 16.39 16.39 35.66 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 2820 0.034863 TAATGAAACGCCTCACCCCC 60.035 55.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.440599 GGGCTGGTCCAATGGTGT 59.559 61.111 0.00 0.00 36.21 4.16
18 19 1.678970 GGGCTGGTCCAATGGTGTC 60.679 63.158 0.00 0.00 36.21 3.67
19 20 2.040544 GGCTGGTCCAATGGTGTCG 61.041 63.158 0.00 0.00 34.01 4.35
20 21 2.040544 GCTGGTCCAATGGTGTCGG 61.041 63.158 0.00 0.00 0.00 4.79
21 22 1.374947 CTGGTCCAATGGTGTCGGT 59.625 57.895 0.00 0.00 0.00 4.69
22 23 0.250727 CTGGTCCAATGGTGTCGGTT 60.251 55.000 0.00 0.00 0.00 4.44
23 24 0.183971 TGGTCCAATGGTGTCGGTTT 59.816 50.000 0.00 0.00 0.00 3.27
24 25 1.324383 GGTCCAATGGTGTCGGTTTT 58.676 50.000 0.00 0.00 0.00 2.43
25 26 1.268625 GGTCCAATGGTGTCGGTTTTC 59.731 52.381 0.00 0.00 0.00 2.29
26 27 2.227194 GTCCAATGGTGTCGGTTTTCT 58.773 47.619 0.00 0.00 0.00 2.52
27 28 2.621526 GTCCAATGGTGTCGGTTTTCTT 59.378 45.455 0.00 0.00 0.00 2.52
28 29 2.882137 TCCAATGGTGTCGGTTTTCTTC 59.118 45.455 0.00 0.00 0.00 2.87
29 30 2.884639 CCAATGGTGTCGGTTTTCTTCT 59.115 45.455 0.00 0.00 0.00 2.85
30 31 3.317993 CCAATGGTGTCGGTTTTCTTCTT 59.682 43.478 0.00 0.00 0.00 2.52
31 32 4.537015 CAATGGTGTCGGTTTTCTTCTTC 58.463 43.478 0.00 0.00 0.00 2.87
32 33 3.553828 TGGTGTCGGTTTTCTTCTTCT 57.446 42.857 0.00 0.00 0.00 2.85
33 34 3.881220 TGGTGTCGGTTTTCTTCTTCTT 58.119 40.909 0.00 0.00 0.00 2.52
34 35 4.266714 TGGTGTCGGTTTTCTTCTTCTTT 58.733 39.130 0.00 0.00 0.00 2.52
35 36 4.703093 TGGTGTCGGTTTTCTTCTTCTTTT 59.297 37.500 0.00 0.00 0.00 2.27
36 37 5.034797 GGTGTCGGTTTTCTTCTTCTTTTG 58.965 41.667 0.00 0.00 0.00 2.44
37 38 5.392703 GGTGTCGGTTTTCTTCTTCTTTTGT 60.393 40.000 0.00 0.00 0.00 2.83
38 39 5.737757 GTGTCGGTTTTCTTCTTCTTTTGTC 59.262 40.000 0.00 0.00 0.00 3.18
39 40 5.163693 TGTCGGTTTTCTTCTTCTTTTGTCC 60.164 40.000 0.00 0.00 0.00 4.02
40 41 4.337274 TCGGTTTTCTTCTTCTTTTGTCCC 59.663 41.667 0.00 0.00 0.00 4.46
41 42 4.338400 CGGTTTTCTTCTTCTTTTGTCCCT 59.662 41.667 0.00 0.00 0.00 4.20
42 43 5.163550 CGGTTTTCTTCTTCTTTTGTCCCTT 60.164 40.000 0.00 0.00 0.00 3.95
43 44 6.627287 CGGTTTTCTTCTTCTTTTGTCCCTTT 60.627 38.462 0.00 0.00 0.00 3.11
44 45 7.103641 GGTTTTCTTCTTCTTTTGTCCCTTTT 58.896 34.615 0.00 0.00 0.00 2.27
45 46 7.277981 GGTTTTCTTCTTCTTTTGTCCCTTTTC 59.722 37.037 0.00 0.00 0.00 2.29
46 47 6.465439 TTCTTCTTCTTTTGTCCCTTTTCC 57.535 37.500 0.00 0.00 0.00 3.13
47 48 4.893524 TCTTCTTCTTTTGTCCCTTTTCCC 59.106 41.667 0.00 0.00 0.00 3.97
48 49 4.258457 TCTTCTTTTGTCCCTTTTCCCA 57.742 40.909 0.00 0.00 0.00 4.37
49 50 4.814967 TCTTCTTTTGTCCCTTTTCCCAT 58.185 39.130 0.00 0.00 0.00 4.00
50 51 4.832823 TCTTCTTTTGTCCCTTTTCCCATC 59.167 41.667 0.00 0.00 0.00 3.51
51 52 4.469469 TCTTTTGTCCCTTTTCCCATCT 57.531 40.909 0.00 0.00 0.00 2.90
52 53 4.814967 TCTTTTGTCCCTTTTCCCATCTT 58.185 39.130 0.00 0.00 0.00 2.40
53 54 5.215845 TCTTTTGTCCCTTTTCCCATCTTT 58.784 37.500 0.00 0.00 0.00 2.52
54 55 5.665360 TCTTTTGTCCCTTTTCCCATCTTTT 59.335 36.000 0.00 0.00 0.00 2.27
55 56 5.966853 TTTGTCCCTTTTCCCATCTTTTT 57.033 34.783 0.00 0.00 0.00 1.94
56 57 5.545063 TTGTCCCTTTTCCCATCTTTTTC 57.455 39.130 0.00 0.00 0.00 2.29
57 58 4.814967 TGTCCCTTTTCCCATCTTTTTCT 58.185 39.130 0.00 0.00 0.00 2.52
58 59 5.215845 TGTCCCTTTTCCCATCTTTTTCTT 58.784 37.500 0.00 0.00 0.00 2.52
59 60 5.665360 TGTCCCTTTTCCCATCTTTTTCTTT 59.335 36.000 0.00 0.00 0.00 2.52
60 61 6.183360 TGTCCCTTTTCCCATCTTTTTCTTTC 60.183 38.462 0.00 0.00 0.00 2.62
61 62 6.042093 GTCCCTTTTCCCATCTTTTTCTTTCT 59.958 38.462 0.00 0.00 0.00 2.52
62 63 6.615316 TCCCTTTTCCCATCTTTTTCTTTCTT 59.385 34.615 0.00 0.00 0.00 2.52
63 64 6.931281 CCCTTTTCCCATCTTTTTCTTTCTTC 59.069 38.462 0.00 0.00 0.00 2.87
64 65 6.931281 CCTTTTCCCATCTTTTTCTTTCTTCC 59.069 38.462 0.00 0.00 0.00 3.46
65 66 7.202038 CCTTTTCCCATCTTTTTCTTTCTTCCT 60.202 37.037 0.00 0.00 0.00 3.36
66 67 7.675161 TTTCCCATCTTTTTCTTTCTTCCTT 57.325 32.000 0.00 0.00 0.00 3.36
67 68 6.901081 TCCCATCTTTTTCTTTCTTCCTTC 57.099 37.500 0.00 0.00 0.00 3.46
68 69 6.372931 TCCCATCTTTTTCTTTCTTCCTTCA 58.627 36.000 0.00 0.00 0.00 3.02
69 70 7.012607 TCCCATCTTTTTCTTTCTTCCTTCAT 58.987 34.615 0.00 0.00 0.00 2.57
70 71 7.510343 TCCCATCTTTTTCTTTCTTCCTTCATT 59.490 33.333 0.00 0.00 0.00 2.57
71 72 8.152898 CCCATCTTTTTCTTTCTTCCTTCATTT 58.847 33.333 0.00 0.00 0.00 2.32
72 73 9.551734 CCATCTTTTTCTTTCTTCCTTCATTTT 57.448 29.630 0.00 0.00 0.00 1.82
75 76 9.942850 TCTTTTTCTTTCTTCCTTCATTTTTGT 57.057 25.926 0.00 0.00 0.00 2.83
130 131 8.787852 TCATTTTATTTTATGTTTGTTTGCCCC 58.212 29.630 0.00 0.00 0.00 5.80
131 132 7.511959 TTTTATTTTATGTTTGTTTGCCCCC 57.488 32.000 0.00 0.00 0.00 5.40
132 133 4.991789 ATTTTATGTTTGTTTGCCCCCT 57.008 36.364 0.00 0.00 0.00 4.79
133 134 4.779993 TTTTATGTTTGTTTGCCCCCTT 57.220 36.364 0.00 0.00 0.00 3.95
134 135 4.779993 TTTATGTTTGTTTGCCCCCTTT 57.220 36.364 0.00 0.00 0.00 3.11
135 136 5.888982 TTTATGTTTGTTTGCCCCCTTTA 57.111 34.783 0.00 0.00 0.00 1.85
136 137 6.441088 TTTATGTTTGTTTGCCCCCTTTAT 57.559 33.333 0.00 0.00 0.00 1.40
137 138 3.760580 TGTTTGTTTGCCCCCTTTATG 57.239 42.857 0.00 0.00 0.00 1.90
138 139 3.041946 TGTTTGTTTGCCCCCTTTATGT 58.958 40.909 0.00 0.00 0.00 2.29
139 140 3.456277 TGTTTGTTTGCCCCCTTTATGTT 59.544 39.130 0.00 0.00 0.00 2.71
140 141 3.760580 TTGTTTGCCCCCTTTATGTTG 57.239 42.857 0.00 0.00 0.00 3.33
141 142 2.683768 TGTTTGCCCCCTTTATGTTGT 58.316 42.857 0.00 0.00 0.00 3.32
142 143 3.041946 TGTTTGCCCCCTTTATGTTGTT 58.958 40.909 0.00 0.00 0.00 2.83
143 144 3.456277 TGTTTGCCCCCTTTATGTTGTTT 59.544 39.130 0.00 0.00 0.00 2.83
144 145 4.080299 TGTTTGCCCCCTTTATGTTGTTTT 60.080 37.500 0.00 0.00 0.00 2.43
145 146 4.344359 TTGCCCCCTTTATGTTGTTTTC 57.656 40.909 0.00 0.00 0.00 2.29
146 147 3.582164 TGCCCCCTTTATGTTGTTTTCT 58.418 40.909 0.00 0.00 0.00 2.52
147 148 3.323403 TGCCCCCTTTATGTTGTTTTCTG 59.677 43.478 0.00 0.00 0.00 3.02
148 149 3.323691 GCCCCCTTTATGTTGTTTTCTGT 59.676 43.478 0.00 0.00 0.00 3.41
149 150 4.560716 GCCCCCTTTATGTTGTTTTCTGTC 60.561 45.833 0.00 0.00 0.00 3.51
150 151 4.832823 CCCCCTTTATGTTGTTTTCTGTCT 59.167 41.667 0.00 0.00 0.00 3.41
151 152 5.304357 CCCCCTTTATGTTGTTTTCTGTCTT 59.696 40.000 0.00 0.00 0.00 3.01
152 153 6.183360 CCCCCTTTATGTTGTTTTCTGTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
153 154 7.014808 CCCCCTTTATGTTGTTTTCTGTCTTTA 59.985 37.037 0.00 0.00 0.00 1.85
154 155 7.865889 CCCCTTTATGTTGTTTTCTGTCTTTAC 59.134 37.037 0.00 0.00 0.00 2.01
155 156 8.630037 CCCTTTATGTTGTTTTCTGTCTTTACT 58.370 33.333 0.00 0.00 0.00 2.24
254 257 9.747898 TGGACACTTATTTTAACTTATGGATGT 57.252 29.630 0.00 0.00 0.00 3.06
500 517 9.862149 AACATTTTTAATAGGGTATGTCTAGGG 57.138 33.333 0.00 0.00 0.00 3.53
501 518 7.942894 ACATTTTTAATAGGGTATGTCTAGGGC 59.057 37.037 0.00 0.00 0.00 5.19
502 519 7.454553 TTTTTAATAGGGTATGTCTAGGGCA 57.545 36.000 0.00 0.00 0.00 5.36
503 520 6.429521 TTTAATAGGGTATGTCTAGGGCAC 57.570 41.667 0.00 0.00 0.00 5.01
504 521 3.630625 ATAGGGTATGTCTAGGGCACA 57.369 47.619 0.00 0.00 0.00 4.57
505 522 2.496679 AGGGTATGTCTAGGGCACAT 57.503 50.000 0.00 1.62 38.13 3.21
506 523 2.330216 AGGGTATGTCTAGGGCACATC 58.670 52.381 0.00 0.00 35.95 3.06
507 524 2.090494 AGGGTATGTCTAGGGCACATCT 60.090 50.000 0.00 0.00 35.95 2.90
508 525 3.142217 AGGGTATGTCTAGGGCACATCTA 59.858 47.826 0.00 0.00 35.95 1.98
509 526 3.511934 GGGTATGTCTAGGGCACATCTAG 59.488 52.174 0.00 0.00 35.95 2.43
510 527 4.408276 GGTATGTCTAGGGCACATCTAGA 58.592 47.826 0.00 0.00 40.38 2.43
511 528 5.020132 GGTATGTCTAGGGCACATCTAGAT 58.980 45.833 0.00 0.00 43.25 1.98
512 529 5.105554 GGTATGTCTAGGGCACATCTAGATG 60.106 48.000 27.63 27.63 43.25 2.90
527 544 5.215252 TCTAGATGTGCCCTACTTATTGC 57.785 43.478 0.00 0.00 0.00 3.56
528 545 3.931907 AGATGTGCCCTACTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
533 550 3.931907 TGCCCTACTTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
535 552 5.366482 TGCCCTACTTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
536 553 5.368145 TGCCCTACTTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
537 554 5.104527 TGCCCTACTTATTGCACATCTAAGT 60.105 40.000 12.25 12.25 38.75 2.24
538 555 5.237344 GCCCTACTTATTGCACATCTAAGTG 59.763 44.000 15.31 0.00 42.37 3.16
539 556 5.760253 CCCTACTTATTGCACATCTAAGTGG 59.240 44.000 15.31 13.19 39.87 4.00
540 557 5.760253 CCTACTTATTGCACATCTAAGTGGG 59.240 44.000 17.76 17.76 43.29 4.61
541 558 5.179452 ACTTATTGCACATCTAAGTGGGT 57.821 39.130 8.56 0.00 39.87 4.51
542 559 4.943705 ACTTATTGCACATCTAAGTGGGTG 59.056 41.667 8.56 0.00 39.87 4.61
543 560 3.719268 ATTGCACATCTAAGTGGGTGA 57.281 42.857 0.00 0.00 39.87 4.02
544 561 3.500448 TTGCACATCTAAGTGGGTGAA 57.500 42.857 0.00 0.00 39.87 3.18
545 562 3.719268 TGCACATCTAAGTGGGTGAAT 57.281 42.857 0.00 0.00 39.87 2.57
546 563 3.609853 TGCACATCTAAGTGGGTGAATC 58.390 45.455 0.00 0.00 39.87 2.52
547 564 3.008923 TGCACATCTAAGTGGGTGAATCA 59.991 43.478 0.00 0.00 39.87 2.57
548 565 4.009675 GCACATCTAAGTGGGTGAATCAA 58.990 43.478 0.00 0.00 39.87 2.57
549 566 4.095483 GCACATCTAAGTGGGTGAATCAAG 59.905 45.833 0.00 0.00 39.87 3.02
550 567 4.095483 CACATCTAAGTGGGTGAATCAAGC 59.905 45.833 0.00 0.00 35.88 4.01
551 568 4.263462 ACATCTAAGTGGGTGAATCAAGCA 60.263 41.667 0.00 0.00 0.00 3.91
552 569 4.574674 TCTAAGTGGGTGAATCAAGCAT 57.425 40.909 0.00 0.00 0.00 3.79
553 570 5.692115 TCTAAGTGGGTGAATCAAGCATA 57.308 39.130 0.00 0.00 0.00 3.14
554 571 6.061022 TCTAAGTGGGTGAATCAAGCATAA 57.939 37.500 0.00 0.00 0.00 1.90
555 572 6.480763 TCTAAGTGGGTGAATCAAGCATAAA 58.519 36.000 0.00 0.00 0.00 1.40
556 573 5.649782 AAGTGGGTGAATCAAGCATAAAG 57.350 39.130 0.00 0.00 0.00 1.85
557 574 4.922206 AGTGGGTGAATCAAGCATAAAGA 58.078 39.130 0.00 0.00 0.00 2.52
558 575 4.946157 AGTGGGTGAATCAAGCATAAAGAG 59.054 41.667 0.00 0.00 0.00 2.85
559 576 4.096984 GTGGGTGAATCAAGCATAAAGAGG 59.903 45.833 0.00 0.00 0.00 3.69
560 577 4.018506 TGGGTGAATCAAGCATAAAGAGGA 60.019 41.667 0.00 0.00 0.00 3.71
561 578 4.949856 GGGTGAATCAAGCATAAAGAGGAA 59.050 41.667 0.00 0.00 0.00 3.36
562 579 5.418840 GGGTGAATCAAGCATAAAGAGGAAA 59.581 40.000 0.00 0.00 0.00 3.13
563 580 6.071391 GGGTGAATCAAGCATAAAGAGGAAAA 60.071 38.462 0.00 0.00 0.00 2.29
564 581 7.031975 GGTGAATCAAGCATAAAGAGGAAAAG 58.968 38.462 0.00 0.00 0.00 2.27
565 582 7.094205 GGTGAATCAAGCATAAAGAGGAAAAGA 60.094 37.037 0.00 0.00 0.00 2.52
566 583 8.299570 GTGAATCAAGCATAAAGAGGAAAAGAA 58.700 33.333 0.00 0.00 0.00 2.52
567 584 8.859090 TGAATCAAGCATAAAGAGGAAAAGAAA 58.141 29.630 0.00 0.00 0.00 2.52
568 585 9.696917 GAATCAAGCATAAAGAGGAAAAGAAAA 57.303 29.630 0.00 0.00 0.00 2.29
592 609 7.406799 AAAAGAAAAAGGAAATATGCACACG 57.593 32.000 0.00 0.00 0.00 4.49
593 610 5.957842 AGAAAAAGGAAATATGCACACGA 57.042 34.783 0.00 0.00 0.00 4.35
594 611 6.325919 AGAAAAAGGAAATATGCACACGAA 57.674 33.333 0.00 0.00 0.00 3.85
595 612 6.924111 AGAAAAAGGAAATATGCACACGAAT 58.076 32.000 0.00 0.00 0.00 3.34
596 613 7.029563 AGAAAAAGGAAATATGCACACGAATC 58.970 34.615 0.00 0.00 0.00 2.52
597 614 6.515272 AAAAGGAAATATGCACACGAATCT 57.485 33.333 0.00 0.00 0.00 2.40
598 615 5.741388 AAGGAAATATGCACACGAATCTC 57.259 39.130 0.00 0.00 0.00 2.75
599 616 3.804325 AGGAAATATGCACACGAATCTCG 59.196 43.478 0.00 0.00 46.93 4.04
600 617 3.802139 GGAAATATGCACACGAATCTCGA 59.198 43.478 2.59 0.00 43.74 4.04
601 618 4.318121 GGAAATATGCACACGAATCTCGAC 60.318 45.833 2.59 0.00 43.74 4.20
602 619 1.822581 TATGCACACGAATCTCGACG 58.177 50.000 2.59 0.00 43.74 5.12
603 620 0.109272 ATGCACACGAATCTCGACGT 60.109 50.000 2.59 0.00 43.74 4.34
604 621 0.518195 TGCACACGAATCTCGACGTA 59.482 50.000 2.59 0.00 43.74 3.57
605 622 1.069091 TGCACACGAATCTCGACGTAA 60.069 47.619 2.59 0.00 43.74 3.18
606 623 1.578023 GCACACGAATCTCGACGTAAG 59.422 52.381 2.59 0.00 43.74 2.34
643 660 8.581057 AAGACTTAGATGTGCAATACTTATCG 57.419 34.615 0.00 0.00 0.00 2.92
644 661 6.642950 AGACTTAGATGTGCAATACTTATCGC 59.357 38.462 0.00 0.00 0.00 4.58
645 662 6.280643 ACTTAGATGTGCAATACTTATCGCA 58.719 36.000 0.00 0.00 0.00 5.10
653 670 5.842907 TGCAATACTTATCGCACATCTAGT 58.157 37.500 0.00 0.00 0.00 2.57
755 772 5.617252 TGAACAGGTTTTTATCGGAAGACT 58.383 37.500 0.00 0.00 46.97 3.24
811 835 5.399596 GTCGAAGCAACTCAAAAAGGATTTC 59.600 40.000 0.00 0.00 37.28 2.17
838 864 1.613925 CTCCGAGTTCAACTCCACTCA 59.386 52.381 12.12 0.00 42.12 3.41
846 872 3.238788 TCAACTCCACTCACACTCCTA 57.761 47.619 0.00 0.00 0.00 2.94
847 873 3.779444 TCAACTCCACTCACACTCCTAT 58.221 45.455 0.00 0.00 0.00 2.57
848 874 4.930696 TCAACTCCACTCACACTCCTATA 58.069 43.478 0.00 0.00 0.00 1.31
849 875 5.330233 TCAACTCCACTCACACTCCTATAA 58.670 41.667 0.00 0.00 0.00 0.98
850 876 5.185249 TCAACTCCACTCACACTCCTATAAC 59.815 44.000 0.00 0.00 0.00 1.89
867 893 4.687458 ATAACAATTAGACGCGCTAACG 57.313 40.909 20.06 16.88 41.64 3.18
891 917 5.930837 AGCCTCTGCCTGTATATAATCTC 57.069 43.478 0.00 0.00 38.69 2.75
892 918 4.714308 AGCCTCTGCCTGTATATAATCTCC 59.286 45.833 0.00 0.00 38.69 3.71
893 919 4.467795 GCCTCTGCCTGTATATAATCTCCA 59.532 45.833 0.00 0.00 0.00 3.86
894 920 5.395103 GCCTCTGCCTGTATATAATCTCCAG 60.395 48.000 0.00 0.00 0.00 3.86
895 921 5.954752 CCTCTGCCTGTATATAATCTCCAGA 59.045 44.000 0.13 0.00 0.00 3.86
897 923 5.416013 TCTGCCTGTATATAATCTCCAGACG 59.584 44.000 0.13 0.00 0.00 4.18
898 924 4.462834 TGCCTGTATATAATCTCCAGACGG 59.537 45.833 0.13 0.00 0.00 4.79
900 926 4.438880 CCTGTATATAATCTCCAGACGGCG 60.439 50.000 4.80 4.80 0.00 6.46
901 927 2.656560 ATATAATCTCCAGACGGCGC 57.343 50.000 6.90 0.00 0.00 6.53
902 928 1.617322 TATAATCTCCAGACGGCGCT 58.383 50.000 6.90 1.65 0.00 5.92
903 929 0.032678 ATAATCTCCAGACGGCGCTG 59.967 55.000 16.39 16.39 35.66 5.18
931 957 2.044946 GAGCCAGGGTTCCGCAAT 60.045 61.111 0.00 0.00 0.00 3.56
937 963 1.153168 AGGGTTCCGCAATCATCCG 60.153 57.895 0.00 0.00 0.00 4.18
1038 1064 4.436515 CGCATCACCGGAAGCATA 57.563 55.556 9.46 0.00 37.60 3.14
1041 1067 1.606480 CGCATCACCGGAAGCATATCT 60.606 52.381 9.46 0.00 37.60 1.98
1143 1191 2.199652 CGCCACCAAAAGGAAGGCA 61.200 57.895 17.76 0.00 45.47 4.75
1172 1220 3.540014 CGACGAGAAGCTGCGCAG 61.540 66.667 32.83 32.83 0.00 5.18
1185 1233 4.063529 CGCAGCACCAAGAGGAAA 57.936 55.556 0.00 0.00 38.69 3.13
1186 1234 1.576421 CGCAGCACCAAGAGGAAAC 59.424 57.895 0.00 0.00 38.69 2.78
1221 1269 4.980805 TGTTCCACGGCGCAGGAC 62.981 66.667 19.54 10.85 32.62 3.85
1294 1342 1.456196 GGATGTCGCTCGGATCCTCA 61.456 60.000 10.75 0.00 34.00 3.86
1313 1361 0.461548 AGCCGTGTGATCGATGATGT 59.538 50.000 0.54 0.00 0.00 3.06
1315 1363 1.802508 GCCGTGTGATCGATGATGTCA 60.803 52.381 0.54 0.00 0.00 3.58
1317 1365 3.126073 CCGTGTGATCGATGATGTCAAT 58.874 45.455 0.54 0.00 0.00 2.57
1362 1410 1.882623 CTCAAGCTCCAAAACCCTGAC 59.117 52.381 0.00 0.00 0.00 3.51
1366 1414 0.110486 GCTCCAAAACCCTGACCTGA 59.890 55.000 0.00 0.00 0.00 3.86
1406 1454 2.303549 CTGGACGAGGAGATGGTGGC 62.304 65.000 0.00 0.00 0.00 5.01
1479 1527 3.204827 CAGGCATGGGTACGCAGC 61.205 66.667 18.19 18.76 0.00 5.25
1539 1587 2.437359 CTCGCAAAGAGGGCCAGG 60.437 66.667 6.18 0.00 43.20 4.45
1615 1664 1.062148 TGACGACGACGATGATCTGAC 59.938 52.381 15.32 0.00 42.66 3.51
1620 1669 2.007608 ACGACGATGATCTGACGAGAA 58.992 47.619 0.00 0.00 0.00 2.87
1621 1670 2.223066 ACGACGATGATCTGACGAGAAC 60.223 50.000 0.00 0.00 0.00 3.01
1622 1671 2.223044 CGACGATGATCTGACGAGAACA 60.223 50.000 11.99 0.00 35.64 3.18
1623 1672 3.727970 CGACGATGATCTGACGAGAACAA 60.728 47.826 11.99 0.00 34.90 2.83
1700 1757 0.178068 TTAGCCATGCGTCTCTTCCC 59.822 55.000 0.00 0.00 0.00 3.97
1728 1785 7.272244 ACATTAACTGTGATCCATCGATGTTA 58.728 34.615 23.27 11.94 36.48 2.41
1729 1786 7.933577 ACATTAACTGTGATCCATCGATGTTAT 59.066 33.333 23.27 16.00 36.48 1.89
1775 2145 5.747951 GCTAAGCTAAGCACTGATGAATT 57.252 39.130 0.00 0.00 42.30 2.17
1776 2146 6.129053 GCTAAGCTAAGCACTGATGAATTT 57.871 37.500 0.00 0.00 42.30 1.82
1778 2148 6.038050 GCTAAGCTAAGCACTGATGAATTTCT 59.962 38.462 0.00 0.00 42.30 2.52
1779 2149 6.830873 AAGCTAAGCACTGATGAATTTCTT 57.169 33.333 0.00 0.00 0.00 2.52
1780 2150 6.192234 AGCTAAGCACTGATGAATTTCTTG 57.808 37.500 0.00 0.00 0.00 3.02
1782 2152 6.881065 AGCTAAGCACTGATGAATTTCTTGTA 59.119 34.615 0.00 0.00 0.00 2.41
1835 2217 2.157738 AGGATGCAGTTCTGTTCTTGC 58.842 47.619 0.00 0.00 0.00 4.01
1853 2235 1.136690 GCGTTTGCAGTTTTAAGGCC 58.863 50.000 0.00 0.00 42.15 5.19
1877 2261 4.862574 TGCACGACAATACAGTAGATGTTC 59.137 41.667 0.00 0.00 39.96 3.18
1954 2338 2.604046 ATTCACCGAGATACTGGCAC 57.396 50.000 0.00 0.00 0.00 5.01
2001 2392 0.686112 ACTCTGCTCAGCCCCTCTAC 60.686 60.000 0.00 0.00 0.00 2.59
2004 2395 0.835941 CTGCTCAGCCCCTCTACAAT 59.164 55.000 0.00 0.00 0.00 2.71
2143 2539 5.990668 AGTGGTTCTGTAGTTCTGAACTTT 58.009 37.500 26.33 7.86 46.77 2.66
2321 2747 5.499139 TGACAAATGAACCAACAGTCTTC 57.501 39.130 0.00 0.00 0.00 2.87
2330 2756 5.530915 TGAACCAACAGTCTTCGATTTCATT 59.469 36.000 0.00 0.00 0.00 2.57
2333 2759 7.687941 ACCAACAGTCTTCGATTTCATTAAT 57.312 32.000 0.00 0.00 0.00 1.40
2341 2767 9.265901 AGTCTTCGATTTCATTAATAGACATGG 57.734 33.333 11.42 3.22 34.16 3.66
2392 2818 9.411189 TGGTATATAACTATATATGCGTGGTGA 57.589 33.333 0.00 0.00 37.73 4.02
2393 2819 9.894783 GGTATATAACTATATATGCGTGGTGAG 57.105 37.037 0.00 0.00 37.73 3.51
2394 2820 9.894783 GTATATAACTATATATGCGTGGTGAGG 57.105 37.037 0.00 0.00 35.84 3.86
2395 2821 4.537135 AACTATATATGCGTGGTGAGGG 57.463 45.455 0.00 0.00 0.00 4.30
2396 2822 2.832129 ACTATATATGCGTGGTGAGGGG 59.168 50.000 0.00 0.00 0.00 4.79
2397 2823 0.984230 ATATATGCGTGGTGAGGGGG 59.016 55.000 0.00 0.00 0.00 5.40
2411 2837 2.355115 GGGGGTGAGGCGTTTCAT 59.645 61.111 0.00 0.00 0.00 2.57
2412 2838 1.304134 GGGGGTGAGGCGTTTCATT 60.304 57.895 0.00 0.00 0.00 2.57
2413 2839 0.034863 GGGGGTGAGGCGTTTCATTA 60.035 55.000 0.00 0.00 0.00 1.90
2414 2840 1.614850 GGGGGTGAGGCGTTTCATTAA 60.615 52.381 0.00 0.00 0.00 1.40
2415 2841 2.375146 GGGGTGAGGCGTTTCATTAAT 58.625 47.619 0.00 0.00 0.00 1.40
2416 2842 3.547746 GGGGTGAGGCGTTTCATTAATA 58.452 45.455 0.00 0.00 0.00 0.98
2417 2843 3.564225 GGGGTGAGGCGTTTCATTAATAG 59.436 47.826 0.00 0.00 0.00 1.73
2418 2844 4.448210 GGGTGAGGCGTTTCATTAATAGA 58.552 43.478 0.00 0.00 0.00 1.98
2419 2845 4.272748 GGGTGAGGCGTTTCATTAATAGAC 59.727 45.833 0.00 0.00 0.00 2.59
2420 2846 4.873827 GGTGAGGCGTTTCATTAATAGACA 59.126 41.667 0.00 0.00 0.00 3.41
2421 2847 5.353123 GGTGAGGCGTTTCATTAATAGACAA 59.647 40.000 0.00 0.00 0.00 3.18
2422 2848 6.456988 GGTGAGGCGTTTCATTAATAGACAAG 60.457 42.308 0.00 0.00 0.00 3.16
2423 2849 5.584649 TGAGGCGTTTCATTAATAGACAAGG 59.415 40.000 0.00 0.00 0.00 3.61
2424 2850 5.497474 AGGCGTTTCATTAATAGACAAGGT 58.503 37.500 0.00 0.00 0.00 3.50
2425 2851 6.646267 AGGCGTTTCATTAATAGACAAGGTA 58.354 36.000 0.00 0.00 0.00 3.08
2426 2852 7.280356 AGGCGTTTCATTAATAGACAAGGTAT 58.720 34.615 0.00 0.00 0.00 2.73
2427 2853 7.773690 AGGCGTTTCATTAATAGACAAGGTATT 59.226 33.333 0.00 0.00 0.00 1.89
2428 2854 8.403236 GGCGTTTCATTAATAGACAAGGTATTT 58.597 33.333 0.00 0.00 0.00 1.40
2429 2855 9.434559 GCGTTTCATTAATAGACAAGGTATTTC 57.565 33.333 0.00 0.00 0.00 2.17
2430 2856 9.632969 CGTTTCATTAATAGACAAGGTATTTCG 57.367 33.333 0.00 0.00 0.00 3.46
2433 2859 8.882415 TCATTAATAGACAAGGTATTTCGTCC 57.118 34.615 0.00 0.00 0.00 4.79
2434 2860 8.701895 TCATTAATAGACAAGGTATTTCGTCCT 58.298 33.333 0.00 0.00 35.34 3.85
2435 2861 8.765219 CATTAATAGACAAGGTATTTCGTCCTG 58.235 37.037 0.00 0.00 33.97 3.86
2436 2862 6.540438 AATAGACAAGGTATTTCGTCCTGA 57.460 37.500 0.00 0.00 33.97 3.86
2437 2863 4.884668 AGACAAGGTATTTCGTCCTGAA 57.115 40.909 0.00 0.00 33.97 3.02
2447 2873 3.799137 TTCGTCCTGAAATTTACGCAC 57.201 42.857 6.38 0.00 35.40 5.34
2448 2874 3.034721 TCGTCCTGAAATTTACGCACT 57.965 42.857 6.38 0.00 35.40 4.40
2449 2875 3.395639 TCGTCCTGAAATTTACGCACTT 58.604 40.909 6.38 0.00 35.40 3.16
2450 2876 3.185594 TCGTCCTGAAATTTACGCACTTG 59.814 43.478 6.38 0.00 35.40 3.16
2451 2877 3.059188 CGTCCTGAAATTTACGCACTTGT 60.059 43.478 0.00 0.00 0.00 3.16
2452 2878 4.219033 GTCCTGAAATTTACGCACTTGTG 58.781 43.478 0.00 0.00 0.00 3.33
2453 2879 2.979813 CCTGAAATTTACGCACTTGTGC 59.020 45.455 15.01 15.01 0.00 4.57
2461 2887 3.529504 GCACTTGTGCGCATTGTG 58.470 55.556 25.41 25.41 34.69 3.33
2462 2888 1.299316 GCACTTGTGCGCATTGTGT 60.299 52.632 27.89 17.55 34.35 3.72
2463 2889 1.270777 GCACTTGTGCGCATTGTGTC 61.271 55.000 27.89 20.58 34.35 3.67
2464 2890 0.308684 CACTTGTGCGCATTGTGTCT 59.691 50.000 15.91 0.00 0.00 3.41
2465 2891 1.024271 ACTTGTGCGCATTGTGTCTT 58.976 45.000 15.91 0.00 0.00 3.01
2466 2892 1.405105 ACTTGTGCGCATTGTGTCTTT 59.595 42.857 15.91 0.00 0.00 2.52
2467 2893 2.616376 ACTTGTGCGCATTGTGTCTTTA 59.384 40.909 15.91 0.00 0.00 1.85
2468 2894 3.066064 ACTTGTGCGCATTGTGTCTTTAA 59.934 39.130 15.91 0.00 0.00 1.52
2469 2895 3.266541 TGTGCGCATTGTGTCTTTAAG 57.733 42.857 15.91 0.00 0.00 1.85
2470 2896 2.616376 TGTGCGCATTGTGTCTTTAAGT 59.384 40.909 15.91 0.00 0.00 2.24
2471 2897 3.066064 TGTGCGCATTGTGTCTTTAAGTT 59.934 39.130 15.91 0.00 0.00 2.66
2472 2898 4.041723 GTGCGCATTGTGTCTTTAAGTTT 58.958 39.130 15.91 0.00 0.00 2.66
2473 2899 4.502645 GTGCGCATTGTGTCTTTAAGTTTT 59.497 37.500 15.91 0.00 0.00 2.43
2474 2900 5.005299 GTGCGCATTGTGTCTTTAAGTTTTT 59.995 36.000 15.91 0.00 0.00 1.94
2475 2901 5.231147 TGCGCATTGTGTCTTTAAGTTTTTC 59.769 36.000 5.66 0.00 0.00 2.29
2476 2902 5.458779 GCGCATTGTGTCTTTAAGTTTTTCT 59.541 36.000 0.30 0.00 0.00 2.52
2477 2903 6.019881 GCGCATTGTGTCTTTAAGTTTTTCTT 60.020 34.615 0.30 0.00 39.89 2.52
2478 2904 7.166804 GCGCATTGTGTCTTTAAGTTTTTCTTA 59.833 33.333 0.30 0.00 37.56 2.10
2479 2905 9.015577 CGCATTGTGTCTTTAAGTTTTTCTTAA 57.984 29.630 0.00 0.00 44.01 1.85
2499 2925 3.503800 AAAAAGAGGATATACCCCGGC 57.496 47.619 0.00 0.00 40.05 6.13
2500 2926 1.359168 AAAGAGGATATACCCCGGCC 58.641 55.000 0.00 0.00 40.05 6.13
2501 2927 0.492276 AAGAGGATATACCCCGGCCT 59.508 55.000 0.00 0.00 40.05 5.19
2502 2928 0.041386 AGAGGATATACCCCGGCCTC 59.959 60.000 12.64 12.64 44.24 4.70
2503 2929 0.041386 GAGGATATACCCCGGCCTCT 59.959 60.000 13.12 0.00 41.44 3.69
2504 2930 0.252284 AGGATATACCCCGGCCTCTG 60.252 60.000 0.00 0.00 40.05 3.35
2505 2931 1.597461 GATATACCCCGGCCTCTGC 59.403 63.158 0.00 0.00 0.00 4.26
2506 2932 1.152118 ATATACCCCGGCCTCTGCA 60.152 57.895 0.00 0.00 40.13 4.41
2507 2933 1.194781 ATATACCCCGGCCTCTGCAG 61.195 60.000 7.63 7.63 40.13 4.41
2511 2937 3.554342 CCCGGCCTCTGCAGCTAT 61.554 66.667 9.47 0.00 40.13 2.97
2512 2938 2.507944 CCGGCCTCTGCAGCTATT 59.492 61.111 9.47 0.00 40.13 1.73
2513 2939 1.153086 CCGGCCTCTGCAGCTATTT 60.153 57.895 9.47 0.00 40.13 1.40
2514 2940 0.749454 CCGGCCTCTGCAGCTATTTT 60.749 55.000 9.47 0.00 40.13 1.82
2515 2941 1.475034 CCGGCCTCTGCAGCTATTTTA 60.475 52.381 9.47 0.00 40.13 1.52
2516 2942 2.498167 CGGCCTCTGCAGCTATTTTAT 58.502 47.619 9.47 0.00 40.13 1.40
2517 2943 2.880890 CGGCCTCTGCAGCTATTTTATT 59.119 45.455 9.47 0.00 40.13 1.40
2518 2944 4.065088 CGGCCTCTGCAGCTATTTTATTA 58.935 43.478 9.47 0.00 40.13 0.98
2519 2945 4.515191 CGGCCTCTGCAGCTATTTTATTAA 59.485 41.667 9.47 0.00 40.13 1.40
2520 2946 5.182001 CGGCCTCTGCAGCTATTTTATTAAT 59.818 40.000 9.47 0.00 40.13 1.40
2521 2947 6.294176 CGGCCTCTGCAGCTATTTTATTAATT 60.294 38.462 9.47 0.00 40.13 1.40
2522 2948 7.436933 GGCCTCTGCAGCTATTTTATTAATTT 58.563 34.615 9.47 0.00 40.13 1.82
2523 2949 7.596621 GGCCTCTGCAGCTATTTTATTAATTTC 59.403 37.037 9.47 0.00 40.13 2.17
2524 2950 8.137437 GCCTCTGCAGCTATTTTATTAATTTCA 58.863 33.333 9.47 0.00 37.47 2.69
2525 2951 9.455847 CCTCTGCAGCTATTTTATTAATTTCAC 57.544 33.333 9.47 0.00 0.00 3.18
2567 2993 8.995027 ATACATCAATAAATCTAAAGCCACCA 57.005 30.769 0.00 0.00 0.00 4.17
2568 2994 7.902920 ACATCAATAAATCTAAAGCCACCAT 57.097 32.000 0.00 0.00 0.00 3.55
2569 2995 7.945134 ACATCAATAAATCTAAAGCCACCATC 58.055 34.615 0.00 0.00 0.00 3.51
2570 2996 7.781693 ACATCAATAAATCTAAAGCCACCATCT 59.218 33.333 0.00 0.00 0.00 2.90
2571 2997 9.288576 CATCAATAAATCTAAAGCCACCATCTA 57.711 33.333 0.00 0.00 0.00 1.98
2572 2998 9.866655 ATCAATAAATCTAAAGCCACCATCTAA 57.133 29.630 0.00 0.00 0.00 2.10
2573 2999 9.342308 TCAATAAATCTAAAGCCACCATCTAAG 57.658 33.333 0.00 0.00 0.00 2.18
2574 3000 7.751768 ATAAATCTAAAGCCACCATCTAAGC 57.248 36.000 0.00 0.00 0.00 3.09
2575 3001 4.778213 ATCTAAAGCCACCATCTAAGCA 57.222 40.909 0.00 0.00 0.00 3.91
2576 3002 4.568072 TCTAAAGCCACCATCTAAGCAA 57.432 40.909 0.00 0.00 0.00 3.91
2577 3003 4.261801 TCTAAAGCCACCATCTAAGCAAC 58.738 43.478 0.00 0.00 0.00 4.17
2578 3004 2.584835 AAGCCACCATCTAAGCAACA 57.415 45.000 0.00 0.00 0.00 3.33
2579 3005 2.814805 AGCCACCATCTAAGCAACAT 57.185 45.000 0.00 0.00 0.00 2.71
2580 3006 3.091633 AGCCACCATCTAAGCAACATT 57.908 42.857 0.00 0.00 0.00 2.71
2581 3007 3.434309 AGCCACCATCTAAGCAACATTT 58.566 40.909 0.00 0.00 0.00 2.32
2582 3008 3.194116 AGCCACCATCTAAGCAACATTTG 59.806 43.478 0.00 0.00 0.00 2.32
2583 3009 3.056607 GCCACCATCTAAGCAACATTTGT 60.057 43.478 0.00 0.00 0.00 2.83
2584 3010 4.561326 GCCACCATCTAAGCAACATTTGTT 60.561 41.667 0.00 0.00 39.12 2.83
2599 3025 7.617041 AACATTTGTTGCTACTCTTATCCTC 57.383 36.000 0.00 0.00 36.80 3.71
2600 3026 6.951971 ACATTTGTTGCTACTCTTATCCTCT 58.048 36.000 0.00 0.00 0.00 3.69
2601 3027 7.398024 ACATTTGTTGCTACTCTTATCCTCTT 58.602 34.615 0.00 0.00 0.00 2.85
2602 3028 7.335422 ACATTTGTTGCTACTCTTATCCTCTTG 59.665 37.037 0.00 0.00 0.00 3.02
2603 3029 6.605471 TTGTTGCTACTCTTATCCTCTTGA 57.395 37.500 0.00 0.00 0.00 3.02
2604 3030 6.798427 TGTTGCTACTCTTATCCTCTTGAT 57.202 37.500 0.00 0.00 37.49 2.57
2605 3031 6.577103 TGTTGCTACTCTTATCCTCTTGATG 58.423 40.000 0.00 0.00 34.76 3.07
2606 3032 6.155221 TGTTGCTACTCTTATCCTCTTGATGT 59.845 38.462 0.00 0.00 34.76 3.06
2607 3033 6.798427 TGCTACTCTTATCCTCTTGATGTT 57.202 37.500 0.00 0.00 34.76 2.71
2608 3034 6.577103 TGCTACTCTTATCCTCTTGATGTTG 58.423 40.000 0.00 0.00 34.76 3.33
2609 3035 5.988561 GCTACTCTTATCCTCTTGATGTTGG 59.011 44.000 0.00 0.00 34.76 3.77
2610 3036 6.407525 GCTACTCTTATCCTCTTGATGTTGGT 60.408 42.308 0.00 0.00 34.76 3.67
2611 3037 5.738909 ACTCTTATCCTCTTGATGTTGGTG 58.261 41.667 0.00 0.00 34.76 4.17
2612 3038 5.249393 ACTCTTATCCTCTTGATGTTGGTGT 59.751 40.000 0.00 0.00 34.76 4.16
2613 3039 5.491070 TCTTATCCTCTTGATGTTGGTGTG 58.509 41.667 0.00 0.00 34.76 3.82
2614 3040 1.896220 TCCTCTTGATGTTGGTGTGC 58.104 50.000 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.678970 GACACCATTGGACCAGCCC 60.679 63.158 10.37 0.00 34.97 5.19
1 2 2.040544 CGACACCATTGGACCAGCC 61.041 63.158 10.37 0.00 37.10 4.85
2 3 2.040544 CCGACACCATTGGACCAGC 61.041 63.158 10.37 0.00 32.66 4.85
3 4 0.250727 AACCGACACCATTGGACCAG 60.251 55.000 10.37 0.00 35.48 4.00
4 5 0.183971 AAACCGACACCATTGGACCA 59.816 50.000 10.37 0.00 35.48 4.02
5 6 1.268625 GAAAACCGACACCATTGGACC 59.731 52.381 10.37 0.00 35.48 4.46
6 7 2.227194 AGAAAACCGACACCATTGGAC 58.773 47.619 10.37 0.00 35.48 4.02
7 8 2.649531 AGAAAACCGACACCATTGGA 57.350 45.000 10.37 0.00 35.48 3.53
8 9 2.884639 AGAAGAAAACCGACACCATTGG 59.115 45.455 0.00 0.00 37.97 3.16
9 10 4.275936 AGAAGAAGAAAACCGACACCATTG 59.724 41.667 0.00 0.00 0.00 2.82
10 11 4.461198 AGAAGAAGAAAACCGACACCATT 58.539 39.130 0.00 0.00 0.00 3.16
11 12 4.086706 AGAAGAAGAAAACCGACACCAT 57.913 40.909 0.00 0.00 0.00 3.55
12 13 3.553828 AGAAGAAGAAAACCGACACCA 57.446 42.857 0.00 0.00 0.00 4.17
13 14 4.895224 AAAGAAGAAGAAAACCGACACC 57.105 40.909 0.00 0.00 0.00 4.16
14 15 5.637809 ACAAAAGAAGAAGAAAACCGACAC 58.362 37.500 0.00 0.00 0.00 3.67
15 16 5.163693 GGACAAAAGAAGAAGAAAACCGACA 60.164 40.000 0.00 0.00 0.00 4.35
16 17 5.271625 GGACAAAAGAAGAAGAAAACCGAC 58.728 41.667 0.00 0.00 0.00 4.79
17 18 4.337274 GGGACAAAAGAAGAAGAAAACCGA 59.663 41.667 0.00 0.00 0.00 4.69
18 19 4.338400 AGGGACAAAAGAAGAAGAAAACCG 59.662 41.667 0.00 0.00 0.00 4.44
19 20 5.854010 AGGGACAAAAGAAGAAGAAAACC 57.146 39.130 0.00 0.00 0.00 3.27
20 21 7.277981 GGAAAAGGGACAAAAGAAGAAGAAAAC 59.722 37.037 0.00 0.00 0.00 2.43
21 22 7.327975 GGAAAAGGGACAAAAGAAGAAGAAAA 58.672 34.615 0.00 0.00 0.00 2.29
22 23 6.127168 GGGAAAAGGGACAAAAGAAGAAGAAA 60.127 38.462 0.00 0.00 0.00 2.52
23 24 5.362717 GGGAAAAGGGACAAAAGAAGAAGAA 59.637 40.000 0.00 0.00 0.00 2.52
24 25 4.893524 GGGAAAAGGGACAAAAGAAGAAGA 59.106 41.667 0.00 0.00 0.00 2.87
25 26 4.649218 TGGGAAAAGGGACAAAAGAAGAAG 59.351 41.667 0.00 0.00 0.00 2.85
26 27 4.615513 TGGGAAAAGGGACAAAAGAAGAA 58.384 39.130 0.00 0.00 0.00 2.52
27 28 4.258457 TGGGAAAAGGGACAAAAGAAGA 57.742 40.909 0.00 0.00 0.00 2.87
28 29 4.835056 AGATGGGAAAAGGGACAAAAGAAG 59.165 41.667 0.00 0.00 0.00 2.85
29 30 4.814967 AGATGGGAAAAGGGACAAAAGAA 58.185 39.130 0.00 0.00 0.00 2.52
30 31 4.469469 AGATGGGAAAAGGGACAAAAGA 57.531 40.909 0.00 0.00 0.00 2.52
31 32 5.551305 AAAGATGGGAAAAGGGACAAAAG 57.449 39.130 0.00 0.00 0.00 2.27
32 33 5.966853 AAAAGATGGGAAAAGGGACAAAA 57.033 34.783 0.00 0.00 0.00 2.44
33 34 5.665360 AGAAAAAGATGGGAAAAGGGACAAA 59.335 36.000 0.00 0.00 0.00 2.83
34 35 5.215845 AGAAAAAGATGGGAAAAGGGACAA 58.784 37.500 0.00 0.00 0.00 3.18
35 36 4.814967 AGAAAAAGATGGGAAAAGGGACA 58.185 39.130 0.00 0.00 0.00 4.02
36 37 5.808366 AAGAAAAAGATGGGAAAAGGGAC 57.192 39.130 0.00 0.00 0.00 4.46
37 38 6.143206 AGAAAGAAAAAGATGGGAAAAGGGA 58.857 36.000 0.00 0.00 0.00 4.20
38 39 6.425210 AGAAAGAAAAAGATGGGAAAAGGG 57.575 37.500 0.00 0.00 0.00 3.95
39 40 6.931281 GGAAGAAAGAAAAAGATGGGAAAAGG 59.069 38.462 0.00 0.00 0.00 3.11
40 41 7.730084 AGGAAGAAAGAAAAAGATGGGAAAAG 58.270 34.615 0.00 0.00 0.00 2.27
41 42 7.675161 AGGAAGAAAGAAAAAGATGGGAAAA 57.325 32.000 0.00 0.00 0.00 2.29
42 43 7.344352 TGAAGGAAGAAAGAAAAAGATGGGAAA 59.656 33.333 0.00 0.00 0.00 3.13
43 44 6.838612 TGAAGGAAGAAAGAAAAAGATGGGAA 59.161 34.615 0.00 0.00 0.00 3.97
44 45 6.372931 TGAAGGAAGAAAGAAAAAGATGGGA 58.627 36.000 0.00 0.00 0.00 4.37
45 46 6.655078 TGAAGGAAGAAAGAAAAAGATGGG 57.345 37.500 0.00 0.00 0.00 4.00
46 47 9.551734 AAAATGAAGGAAGAAAGAAAAAGATGG 57.448 29.630 0.00 0.00 0.00 3.51
49 50 9.942850 ACAAAAATGAAGGAAGAAAGAAAAAGA 57.057 25.926 0.00 0.00 0.00 2.52
104 105 8.787852 GGGGCAAACAAACATAAAATAAAATGA 58.212 29.630 0.00 0.00 0.00 2.57
105 106 8.026026 GGGGGCAAACAAACATAAAATAAAATG 58.974 33.333 0.00 0.00 0.00 2.32
106 107 7.947332 AGGGGGCAAACAAACATAAAATAAAAT 59.053 29.630 0.00 0.00 0.00 1.82
107 108 7.290813 AGGGGGCAAACAAACATAAAATAAAA 58.709 30.769 0.00 0.00 0.00 1.52
108 109 6.842676 AGGGGGCAAACAAACATAAAATAAA 58.157 32.000 0.00 0.00 0.00 1.40
109 110 6.441088 AGGGGGCAAACAAACATAAAATAA 57.559 33.333 0.00 0.00 0.00 1.40
110 111 6.441088 AAGGGGGCAAACAAACATAAAATA 57.559 33.333 0.00 0.00 0.00 1.40
111 112 4.991789 AGGGGGCAAACAAACATAAAAT 57.008 36.364 0.00 0.00 0.00 1.82
112 113 4.779993 AAGGGGGCAAACAAACATAAAA 57.220 36.364 0.00 0.00 0.00 1.52
113 114 4.779993 AAAGGGGGCAAACAAACATAAA 57.220 36.364 0.00 0.00 0.00 1.40
114 115 5.308237 ACATAAAGGGGGCAAACAAACATAA 59.692 36.000 0.00 0.00 0.00 1.90
115 116 4.841246 ACATAAAGGGGGCAAACAAACATA 59.159 37.500 0.00 0.00 0.00 2.29
116 117 3.650461 ACATAAAGGGGGCAAACAAACAT 59.350 39.130 0.00 0.00 0.00 2.71
117 118 3.041946 ACATAAAGGGGGCAAACAAACA 58.958 40.909 0.00 0.00 0.00 2.83
118 119 3.762407 ACATAAAGGGGGCAAACAAAC 57.238 42.857 0.00 0.00 0.00 2.93
119 120 3.456277 ACAACATAAAGGGGGCAAACAAA 59.544 39.130 0.00 0.00 0.00 2.83
120 121 3.041946 ACAACATAAAGGGGGCAAACAA 58.958 40.909 0.00 0.00 0.00 2.83
121 122 2.683768 ACAACATAAAGGGGGCAAACA 58.316 42.857 0.00 0.00 0.00 2.83
122 123 3.762407 AACAACATAAAGGGGGCAAAC 57.238 42.857 0.00 0.00 0.00 2.93
123 124 4.410555 AGAAAACAACATAAAGGGGGCAAA 59.589 37.500 0.00 0.00 0.00 3.68
124 125 3.970640 AGAAAACAACATAAAGGGGGCAA 59.029 39.130 0.00 0.00 0.00 4.52
125 126 3.323403 CAGAAAACAACATAAAGGGGGCA 59.677 43.478 0.00 0.00 0.00 5.36
126 127 3.323691 ACAGAAAACAACATAAAGGGGGC 59.676 43.478 0.00 0.00 0.00 5.80
127 128 4.832823 AGACAGAAAACAACATAAAGGGGG 59.167 41.667 0.00 0.00 0.00 5.40
128 129 6.405278 AAGACAGAAAACAACATAAAGGGG 57.595 37.500 0.00 0.00 0.00 4.79
129 130 8.630037 AGTAAAGACAGAAAACAACATAAAGGG 58.370 33.333 0.00 0.00 0.00 3.95
180 181 8.208224 TGTGTTTTACTCAAGAGAATAGTGGAA 58.792 33.333 3.73 0.00 0.00 3.53
182 183 7.962964 TGTGTTTTACTCAAGAGAATAGTGG 57.037 36.000 3.73 0.00 0.00 4.00
259 262 8.576442 TCTTGCATAGACGATCATGTTCTATTA 58.424 33.333 2.44 0.00 0.00 0.98
362 378 7.760131 ATATGTTGCAATAAAATGAGCACAC 57.240 32.000 0.59 0.00 36.62 3.82
478 495 7.092354 TGTGCCCTAGACATACCCTATTAAAAA 60.092 37.037 0.00 0.00 0.00 1.94
480 497 5.906495 TGTGCCCTAGACATACCCTATTAAA 59.094 40.000 0.00 0.00 0.00 1.52
483 500 3.936461 TGTGCCCTAGACATACCCTATT 58.064 45.455 0.00 0.00 0.00 1.73
484 501 3.630625 TGTGCCCTAGACATACCCTAT 57.369 47.619 0.00 0.00 0.00 2.57
485 502 3.142217 AGATGTGCCCTAGACATACCCTA 59.858 47.826 0.00 0.00 34.10 3.53
486 503 2.090494 AGATGTGCCCTAGACATACCCT 60.090 50.000 0.00 0.00 34.10 4.34
487 504 2.330216 AGATGTGCCCTAGACATACCC 58.670 52.381 0.00 0.00 34.10 3.69
488 505 4.408276 TCTAGATGTGCCCTAGACATACC 58.592 47.826 0.00 0.00 38.08 2.73
489 506 5.960113 CATCTAGATGTGCCCTAGACATAC 58.040 45.833 22.42 0.00 43.57 2.39
503 520 5.641209 GCAATAAGTAGGGCACATCTAGATG 59.359 44.000 27.63 27.63 44.15 2.90
504 521 5.307976 TGCAATAAGTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 0.00 1.98
505 522 4.653801 TGCAATAAGTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 0.00 2.43
506 523 4.960938 TGCAATAAGTAGGGCACATCTAG 58.039 43.478 0.00 0.00 0.00 2.43
508 525 3.931907 TGCAATAAGTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
513 530 3.931907 AGATGTGCAATAAGTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
514 531 5.237344 CACTTAGATGTGCAATAAGTAGGGC 59.763 44.000 12.07 0.00 37.59 5.19
515 532 5.760253 CCACTTAGATGTGCAATAAGTAGGG 59.240 44.000 12.07 8.44 37.59 3.53
516 533 5.760253 CCCACTTAGATGTGCAATAAGTAGG 59.240 44.000 12.07 11.15 37.59 3.18
517 534 6.258727 CACCCACTTAGATGTGCAATAAGTAG 59.741 42.308 12.07 10.09 37.59 2.57
518 535 6.070481 TCACCCACTTAGATGTGCAATAAGTA 60.070 38.462 12.07 0.00 37.59 2.24
519 536 4.943705 CACCCACTTAGATGTGCAATAAGT 59.056 41.667 8.35 8.35 39.67 2.24
520 537 5.185454 TCACCCACTTAGATGTGCAATAAG 58.815 41.667 0.00 0.00 36.68 1.73
521 538 5.172687 TCACCCACTTAGATGTGCAATAA 57.827 39.130 0.00 0.00 36.68 1.40
522 539 4.835284 TCACCCACTTAGATGTGCAATA 57.165 40.909 0.00 0.00 36.68 1.90
523 540 3.719268 TCACCCACTTAGATGTGCAAT 57.281 42.857 0.00 0.00 36.68 3.56
524 541 3.500448 TTCACCCACTTAGATGTGCAA 57.500 42.857 0.00 0.00 36.68 4.08
525 542 3.008923 TGATTCACCCACTTAGATGTGCA 59.991 43.478 0.00 0.00 36.68 4.57
526 543 3.609853 TGATTCACCCACTTAGATGTGC 58.390 45.455 0.00 0.00 36.68 4.57
527 544 4.095483 GCTTGATTCACCCACTTAGATGTG 59.905 45.833 0.00 0.00 37.66 3.21
528 545 4.263462 TGCTTGATTCACCCACTTAGATGT 60.263 41.667 0.00 0.00 0.00 3.06
529 546 4.264253 TGCTTGATTCACCCACTTAGATG 58.736 43.478 0.00 0.00 0.00 2.90
530 547 4.574674 TGCTTGATTCACCCACTTAGAT 57.425 40.909 0.00 0.00 0.00 1.98
531 548 4.574674 ATGCTTGATTCACCCACTTAGA 57.425 40.909 0.00 0.00 0.00 2.10
532 549 6.599244 TCTTTATGCTTGATTCACCCACTTAG 59.401 38.462 0.00 0.00 0.00 2.18
533 550 6.480763 TCTTTATGCTTGATTCACCCACTTA 58.519 36.000 0.00 0.00 0.00 2.24
534 551 5.324409 TCTTTATGCTTGATTCACCCACTT 58.676 37.500 0.00 0.00 0.00 3.16
535 552 4.922206 TCTTTATGCTTGATTCACCCACT 58.078 39.130 0.00 0.00 0.00 4.00
536 553 4.096984 CCTCTTTATGCTTGATTCACCCAC 59.903 45.833 0.00 0.00 0.00 4.61
537 554 4.018506 TCCTCTTTATGCTTGATTCACCCA 60.019 41.667 0.00 0.00 0.00 4.51
538 555 4.526970 TCCTCTTTATGCTTGATTCACCC 58.473 43.478 0.00 0.00 0.00 4.61
539 556 6.515272 TTTCCTCTTTATGCTTGATTCACC 57.485 37.500 0.00 0.00 0.00 4.02
540 557 7.820648 TCTTTTCCTCTTTATGCTTGATTCAC 58.179 34.615 0.00 0.00 0.00 3.18
541 558 8.408043 TTCTTTTCCTCTTTATGCTTGATTCA 57.592 30.769 0.00 0.00 0.00 2.57
542 559 9.696917 TTTTCTTTTCCTCTTTATGCTTGATTC 57.303 29.630 0.00 0.00 0.00 2.52
567 584 7.708752 TCGTGTGCATATTTCCTTTTTCTTTTT 59.291 29.630 0.00 0.00 0.00 1.94
568 585 7.206687 TCGTGTGCATATTTCCTTTTTCTTTT 58.793 30.769 0.00 0.00 0.00 2.27
569 586 6.744112 TCGTGTGCATATTTCCTTTTTCTTT 58.256 32.000 0.00 0.00 0.00 2.52
570 587 6.325919 TCGTGTGCATATTTCCTTTTTCTT 57.674 33.333 0.00 0.00 0.00 2.52
571 588 5.957842 TCGTGTGCATATTTCCTTTTTCT 57.042 34.783 0.00 0.00 0.00 2.52
572 589 7.029563 AGATTCGTGTGCATATTTCCTTTTTC 58.970 34.615 0.00 0.00 0.00 2.29
573 590 6.924111 AGATTCGTGTGCATATTTCCTTTTT 58.076 32.000 0.00 0.00 0.00 1.94
574 591 6.515272 AGATTCGTGTGCATATTTCCTTTT 57.485 33.333 0.00 0.00 0.00 2.27
575 592 5.220662 CGAGATTCGTGTGCATATTTCCTTT 60.221 40.000 0.00 0.00 34.72 3.11
576 593 4.271049 CGAGATTCGTGTGCATATTTCCTT 59.729 41.667 0.00 0.00 34.72 3.36
577 594 3.804325 CGAGATTCGTGTGCATATTTCCT 59.196 43.478 0.00 0.00 34.72 3.36
578 595 3.802139 TCGAGATTCGTGTGCATATTTCC 59.198 43.478 0.00 0.00 41.35 3.13
579 596 4.604043 CGTCGAGATTCGTGTGCATATTTC 60.604 45.833 0.00 0.00 41.35 2.17
580 597 3.242944 CGTCGAGATTCGTGTGCATATTT 59.757 43.478 0.00 0.00 41.35 1.40
581 598 2.789339 CGTCGAGATTCGTGTGCATATT 59.211 45.455 0.00 0.00 41.35 1.28
582 599 2.223502 ACGTCGAGATTCGTGTGCATAT 60.224 45.455 0.00 0.00 41.35 1.78
583 600 1.131693 ACGTCGAGATTCGTGTGCATA 59.868 47.619 0.00 0.00 41.35 3.14
584 601 0.109272 ACGTCGAGATTCGTGTGCAT 60.109 50.000 0.00 0.00 41.35 3.96
585 602 0.518195 TACGTCGAGATTCGTGTGCA 59.482 50.000 8.84 0.00 41.35 4.57
586 603 1.578023 CTTACGTCGAGATTCGTGTGC 59.422 52.381 8.84 0.00 41.35 4.57
587 604 2.847901 ACTTACGTCGAGATTCGTGTG 58.152 47.619 8.84 4.50 41.35 3.82
588 605 3.058708 TGAACTTACGTCGAGATTCGTGT 60.059 43.478 8.84 0.00 41.35 4.49
589 606 3.485633 TGAACTTACGTCGAGATTCGTG 58.514 45.455 8.84 0.00 41.35 4.35
590 607 3.818961 TGAACTTACGTCGAGATTCGT 57.181 42.857 0.00 4.19 41.35 3.85
591 608 4.791676 TCATTGAACTTACGTCGAGATTCG 59.208 41.667 0.00 0.00 42.10 3.34
592 609 6.814076 ATCATTGAACTTACGTCGAGATTC 57.186 37.500 0.00 0.00 0.00 2.52
593 610 9.961265 TTATATCATTGAACTTACGTCGAGATT 57.039 29.630 0.00 0.00 0.00 2.40
594 611 9.613957 CTTATATCATTGAACTTACGTCGAGAT 57.386 33.333 0.00 0.00 0.00 2.75
595 612 8.833493 TCTTATATCATTGAACTTACGTCGAGA 58.167 33.333 0.00 0.00 0.00 4.04
596 613 8.893884 GTCTTATATCATTGAACTTACGTCGAG 58.106 37.037 0.00 0.00 0.00 4.04
597 614 8.618677 AGTCTTATATCATTGAACTTACGTCGA 58.381 33.333 0.00 0.00 0.00 4.20
598 615 8.783999 AGTCTTATATCATTGAACTTACGTCG 57.216 34.615 0.00 0.00 0.00 5.12
617 634 9.678941 CGATAAGTATTGCACATCTAAGTCTTA 57.321 33.333 0.00 0.00 0.00 2.10
618 635 7.169982 GCGATAAGTATTGCACATCTAAGTCTT 59.830 37.037 5.78 0.00 41.66 3.01
619 636 6.642950 GCGATAAGTATTGCACATCTAAGTCT 59.357 38.462 5.78 0.00 41.66 3.24
620 637 6.420903 TGCGATAAGTATTGCACATCTAAGTC 59.579 38.462 8.84 0.00 45.55 3.01
621 638 6.280643 TGCGATAAGTATTGCACATCTAAGT 58.719 36.000 8.84 0.00 45.55 2.24
622 639 6.769608 TGCGATAAGTATTGCACATCTAAG 57.230 37.500 8.84 0.00 45.55 2.18
631 648 6.145807 CACTAGATGTGCGATAAGTATTGC 57.854 41.667 0.00 3.89 42.24 3.56
724 741 8.798402 TCCGATAAAAACCTGTTCATGTATTTT 58.202 29.630 0.00 0.00 0.00 1.82
733 750 7.201617 CCATAGTCTTCCGATAAAAACCTGTTC 60.202 40.741 0.00 0.00 0.00 3.18
734 751 6.598064 CCATAGTCTTCCGATAAAAACCTGTT 59.402 38.462 0.00 0.00 0.00 3.16
743 760 5.455872 AGTTCCTCCATAGTCTTCCGATAA 58.544 41.667 0.00 0.00 0.00 1.75
838 864 5.279384 CGCGTCTAATTGTTATAGGAGTGT 58.721 41.667 0.00 0.00 0.00 3.55
846 872 4.353737 TCGTTAGCGCGTCTAATTGTTAT 58.646 39.130 20.40 0.00 39.29 1.89
847 873 3.757184 TCGTTAGCGCGTCTAATTGTTA 58.243 40.909 20.40 7.26 39.29 2.41
848 874 2.598589 TCGTTAGCGCGTCTAATTGTT 58.401 42.857 20.40 0.00 39.29 2.83
849 875 2.267188 TCGTTAGCGCGTCTAATTGT 57.733 45.000 20.40 0.00 39.29 2.71
850 876 2.594498 GCTTCGTTAGCGCGTCTAATTG 60.594 50.000 20.40 16.75 40.71 2.32
867 893 6.293004 AGATTATATACAGGCAGAGGCTTC 57.707 41.667 0.00 0.00 40.87 3.86
892 918 1.766143 GAATTAGCCAGCGCCGTCTG 61.766 60.000 2.29 0.00 34.57 3.51
893 919 1.521681 GAATTAGCCAGCGCCGTCT 60.522 57.895 2.29 0.14 34.57 4.18
894 920 2.871427 CGAATTAGCCAGCGCCGTC 61.871 63.158 2.29 0.00 34.57 4.79
895 921 2.890474 CGAATTAGCCAGCGCCGT 60.890 61.111 2.29 0.00 34.57 5.68
897 923 1.218230 CTCTCGAATTAGCCAGCGCC 61.218 60.000 2.29 0.00 34.57 6.53
898 924 1.826299 GCTCTCGAATTAGCCAGCGC 61.826 60.000 0.00 0.00 32.40 5.92
904 930 0.466124 ACCCTGGCTCTCGAATTAGC 59.534 55.000 5.70 5.70 38.03 3.09
931 957 1.882625 CGCGAGATTTGGCGGATGA 60.883 57.895 0.00 0.00 46.10 2.92
937 963 4.520846 CACGCCGCGAGATTTGGC 62.521 66.667 21.79 0.00 45.39 4.52
997 1023 1.750399 CTTCCTCACGGGCCATTGG 60.750 63.158 4.39 0.00 34.39 3.16
1020 1046 0.603707 ATATGCTTCCGGTGATGCGG 60.604 55.000 0.00 0.00 42.86 5.69
1038 1064 2.913060 GCCCTCTCGCCCGTAGAT 60.913 66.667 0.00 0.00 0.00 1.98
1172 1220 2.626780 GGCGGTTTCCTCTTGGTGC 61.627 63.158 0.00 0.00 34.23 5.01
1174 1222 2.032071 CGGCGGTTTCCTCTTGGT 59.968 61.111 0.00 0.00 34.23 3.67
1179 1227 4.832608 ATCGCCGGCGGTTTCCTC 62.833 66.667 44.95 8.46 40.25 3.71
1199 1247 2.251371 GCGCCGTGGAACAAGAAC 59.749 61.111 0.00 0.00 44.16 3.01
1221 1269 1.528586 GCATACTTCACATAGCCAGCG 59.471 52.381 0.00 0.00 0.00 5.18
1294 1342 0.461548 ACATCATCGATCACACGGCT 59.538 50.000 0.00 0.00 0.00 5.52
1313 1361 2.267642 CGGAAGGGGCGTCATTGA 59.732 61.111 0.00 0.00 0.00 2.57
1315 1363 1.838073 AAGTCGGAAGGGGCGTCATT 61.838 55.000 0.00 0.00 0.00 2.57
1317 1365 2.920912 AAGTCGGAAGGGGCGTCA 60.921 61.111 0.00 0.00 0.00 4.35
1362 1410 1.227380 CTCCGGCGAAGGAATCAGG 60.227 63.158 9.30 0.00 40.25 3.86
1366 1414 2.435693 CCTCCTCCGGCGAAGGAAT 61.436 63.158 17.69 0.00 42.31 3.01
1406 1454 1.132436 CGCACGCCGGCATAATATG 59.868 57.895 28.98 14.64 0.00 1.78
1479 1527 2.442188 GCCGTTCTTGGCGTACTCG 61.442 63.158 0.00 0.00 46.75 4.18
1527 1575 3.330720 CGGACCCTGGCCCTCTTT 61.331 66.667 0.00 0.00 0.00 2.52
1615 1664 5.292101 GGATTCAGTACCATCTTTGTTCTCG 59.708 44.000 0.00 0.00 0.00 4.04
1620 1669 4.553330 ACGGATTCAGTACCATCTTTGT 57.447 40.909 0.00 0.00 0.00 2.83
1621 1670 6.280643 TGATACGGATTCAGTACCATCTTTG 58.719 40.000 0.00 0.00 0.00 2.77
1622 1671 6.479972 TGATACGGATTCAGTACCATCTTT 57.520 37.500 0.00 0.00 0.00 2.52
1623 1672 6.672266 ATGATACGGATTCAGTACCATCTT 57.328 37.500 0.00 0.00 0.00 2.40
1720 1777 7.984617 TGACATGGATCAAAGTAATAACATCGA 59.015 33.333 0.00 0.00 0.00 3.59
1725 1782 8.607459 CAGTCTGACATGGATCAAAGTAATAAC 58.393 37.037 10.88 0.00 0.00 1.89
1728 1785 6.596888 CACAGTCTGACATGGATCAAAGTAAT 59.403 38.462 10.88 0.00 0.00 1.89
1729 1786 5.934043 CACAGTCTGACATGGATCAAAGTAA 59.066 40.000 10.88 0.00 0.00 2.24
1775 2145 9.863845 TCGATATAACACAGTGAATTACAAGAA 57.136 29.630 7.81 0.00 0.00 2.52
1778 2148 9.810545 TGATCGATATAACACAGTGAATTACAA 57.189 29.630 7.81 0.00 0.00 2.41
1779 2149 9.463443 CTGATCGATATAACACAGTGAATTACA 57.537 33.333 7.81 0.00 0.00 2.41
1780 2150 9.464714 ACTGATCGATATAACACAGTGAATTAC 57.535 33.333 7.81 0.00 37.24 1.89
1782 2152 8.948631 AACTGATCGATATAACACAGTGAATT 57.051 30.769 13.91 0.00 38.35 2.17
1785 2163 7.919091 GGTAAACTGATCGATATAACACAGTGA 59.081 37.037 13.91 5.19 38.35 3.41
1794 2172 8.470002 CATCCTCATGGTAAACTGATCGATATA 58.530 37.037 0.00 0.00 34.23 0.86
1835 2217 2.393764 CAGGCCTTAAAACTGCAAACG 58.606 47.619 0.00 0.00 0.00 3.60
1853 2235 4.424626 ACATCTACTGTATTGTCGTGCAG 58.575 43.478 0.00 0.00 35.91 4.41
1877 2261 3.434641 CCATGCTAGTGATAATTCGCAGG 59.565 47.826 0.00 0.00 34.70 4.85
1954 2338 7.036220 CCAATTAGTGTACTTCTCACTACCAG 58.964 42.308 5.46 0.26 44.57 4.00
1972 2356 3.376546 GGCTGAGCAGAGTTTCCAATTAG 59.623 47.826 6.82 0.00 0.00 1.73
2004 2395 9.137459 TGTTTTAGTTGATGGGTTCTGAATTTA 57.863 29.630 0.00 0.00 0.00 1.40
2066 2457 4.142004 CCGCTGTTTACCCAGATAACTACT 60.142 45.833 0.00 0.00 34.23 2.57
2075 2471 2.403252 ATTCTCCGCTGTTTACCCAG 57.597 50.000 0.00 0.00 35.49 4.45
2143 2539 3.557898 GGCTTCCTCTGAATCAGACAACA 60.558 47.826 9.18 0.00 35.39 3.33
2217 2618 0.542467 AAGGTGTGGCCATTGCATGA 60.542 50.000 9.72 0.00 40.61 3.07
2366 2792 9.411189 TCACCACGCATATATAGTTATATACCA 57.589 33.333 1.92 0.00 34.85 3.25
2367 2793 9.894783 CTCACCACGCATATATAGTTATATACC 57.105 37.037 1.92 0.00 34.85 2.73
2368 2794 9.894783 CCTCACCACGCATATATAGTTATATAC 57.105 37.037 1.92 0.00 34.85 1.47
2369 2795 9.074576 CCCTCACCACGCATATATAGTTATATA 57.925 37.037 2.30 2.30 36.05 0.86
2370 2796 7.015292 CCCCTCACCACGCATATATAGTTATAT 59.985 40.741 0.00 0.00 32.30 0.86
2371 2797 6.322969 CCCCTCACCACGCATATATAGTTATA 59.677 42.308 0.00 0.00 0.00 0.98
2372 2798 5.128827 CCCCTCACCACGCATATATAGTTAT 59.871 44.000 0.00 0.00 0.00 1.89
2373 2799 4.464951 CCCCTCACCACGCATATATAGTTA 59.535 45.833 0.00 0.00 0.00 2.24
2374 2800 3.260884 CCCCTCACCACGCATATATAGTT 59.739 47.826 0.00 0.00 0.00 2.24
2375 2801 2.832129 CCCCTCACCACGCATATATAGT 59.168 50.000 0.00 0.00 0.00 2.12
2376 2802 2.168521 CCCCCTCACCACGCATATATAG 59.831 54.545 0.00 0.00 0.00 1.31
2377 2803 2.184533 CCCCCTCACCACGCATATATA 58.815 52.381 0.00 0.00 0.00 0.86
2378 2804 0.984230 CCCCCTCACCACGCATATAT 59.016 55.000 0.00 0.00 0.00 0.86
2379 2805 2.447630 CCCCCTCACCACGCATATA 58.552 57.895 0.00 0.00 0.00 0.86
2380 2806 3.240491 CCCCCTCACCACGCATAT 58.760 61.111 0.00 0.00 0.00 1.78
2394 2820 0.034863 TAATGAAACGCCTCACCCCC 60.035 55.000 0.00 0.00 0.00 5.40
2395 2821 1.828979 TTAATGAAACGCCTCACCCC 58.171 50.000 0.00 0.00 0.00 4.95
2396 2822 4.272748 GTCTATTAATGAAACGCCTCACCC 59.727 45.833 0.00 0.00 0.00 4.61
2397 2823 4.873827 TGTCTATTAATGAAACGCCTCACC 59.126 41.667 0.00 0.00 0.00 4.02
2398 2824 6.417191 TTGTCTATTAATGAAACGCCTCAC 57.583 37.500 0.00 0.00 0.00 3.51
2399 2825 5.584649 CCTTGTCTATTAATGAAACGCCTCA 59.415 40.000 0.00 0.00 0.00 3.86
2400 2826 5.585047 ACCTTGTCTATTAATGAAACGCCTC 59.415 40.000 0.00 0.00 0.00 4.70
2401 2827 5.497474 ACCTTGTCTATTAATGAAACGCCT 58.503 37.500 0.00 0.00 0.00 5.52
2402 2828 5.813080 ACCTTGTCTATTAATGAAACGCC 57.187 39.130 0.00 0.00 0.00 5.68
2403 2829 9.434559 GAAATACCTTGTCTATTAATGAAACGC 57.565 33.333 0.00 0.00 0.00 4.84
2404 2830 9.632969 CGAAATACCTTGTCTATTAATGAAACG 57.367 33.333 0.00 0.00 0.00 3.60
2407 2833 9.321562 GGACGAAATACCTTGTCTATTAATGAA 57.678 33.333 0.00 0.00 0.00 2.57
2408 2834 8.701895 AGGACGAAATACCTTGTCTATTAATGA 58.298 33.333 0.00 0.00 31.95 2.57
2409 2835 8.765219 CAGGACGAAATACCTTGTCTATTAATG 58.235 37.037 0.00 0.00 33.91 1.90
2410 2836 8.701895 TCAGGACGAAATACCTTGTCTATTAAT 58.298 33.333 0.00 0.00 33.91 1.40
2411 2837 8.070034 TCAGGACGAAATACCTTGTCTATTAA 57.930 34.615 0.00 0.00 33.91 1.40
2412 2838 7.649533 TCAGGACGAAATACCTTGTCTATTA 57.350 36.000 0.00 0.00 33.91 0.98
2413 2839 6.540438 TCAGGACGAAATACCTTGTCTATT 57.460 37.500 0.00 0.00 33.91 1.73
2414 2840 6.540438 TTCAGGACGAAATACCTTGTCTAT 57.460 37.500 0.00 0.00 33.91 1.98
2415 2841 5.988310 TTCAGGACGAAATACCTTGTCTA 57.012 39.130 0.00 0.00 33.91 2.59
2416 2842 4.884668 TTCAGGACGAAATACCTTGTCT 57.115 40.909 0.00 0.00 33.91 3.41
2427 2853 3.395639 AGTGCGTAAATTTCAGGACGAA 58.604 40.909 13.86 1.99 37.50 3.85
2428 2854 3.034721 AGTGCGTAAATTTCAGGACGA 57.965 42.857 13.86 0.00 37.50 4.20
2429 2855 3.059188 ACAAGTGCGTAAATTTCAGGACG 60.059 43.478 6.82 6.82 38.32 4.79
2430 2856 4.219033 CACAAGTGCGTAAATTTCAGGAC 58.781 43.478 0.00 1.59 0.00 3.85
2431 2857 4.481930 CACAAGTGCGTAAATTTCAGGA 57.518 40.909 0.00 0.00 0.00 3.86
2445 2871 0.308684 AGACACAATGCGCACAAGTG 59.691 50.000 27.11 27.11 40.06 3.16
2446 2872 1.024271 AAGACACAATGCGCACAAGT 58.976 45.000 14.90 9.58 0.00 3.16
2447 2873 2.124011 AAAGACACAATGCGCACAAG 57.876 45.000 14.90 8.32 0.00 3.16
2448 2874 3.066064 ACTTAAAGACACAATGCGCACAA 59.934 39.130 14.90 0.00 0.00 3.33
2449 2875 2.616376 ACTTAAAGACACAATGCGCACA 59.384 40.909 14.90 0.00 0.00 4.57
2450 2876 3.268013 ACTTAAAGACACAATGCGCAC 57.732 42.857 14.90 0.00 0.00 5.34
2451 2877 3.980646 AACTTAAAGACACAATGCGCA 57.019 38.095 14.96 14.96 0.00 6.09
2452 2878 5.458779 AGAAAAACTTAAAGACACAATGCGC 59.541 36.000 0.00 0.00 0.00 6.09
2453 2879 7.449934 AAGAAAAACTTAAAGACACAATGCG 57.550 32.000 0.00 0.00 37.03 4.73
2479 2905 2.107726 GGCCGGGGTATATCCTCTTTTT 59.892 50.000 2.18 0.00 33.68 1.94
2480 2906 1.703513 GGCCGGGGTATATCCTCTTTT 59.296 52.381 2.18 0.00 33.68 2.27
2481 2907 1.132495 AGGCCGGGGTATATCCTCTTT 60.132 52.381 2.18 0.00 33.68 2.52
2482 2908 0.492276 AGGCCGGGGTATATCCTCTT 59.508 55.000 2.18 0.00 33.68 2.85
2483 2909 0.041386 GAGGCCGGGGTATATCCTCT 59.959 60.000 13.12 0.00 40.02 3.69
2484 2910 0.041386 AGAGGCCGGGGTATATCCTC 59.959 60.000 12.64 12.64 42.68 3.71
2485 2911 0.252284 CAGAGGCCGGGGTATATCCT 60.252 60.000 2.18 0.00 36.25 3.24
2486 2912 1.900545 GCAGAGGCCGGGGTATATCC 61.901 65.000 2.18 0.00 0.00 2.59
2487 2913 1.192146 TGCAGAGGCCGGGGTATATC 61.192 60.000 2.18 0.00 40.13 1.63
2488 2914 1.152118 TGCAGAGGCCGGGGTATAT 60.152 57.895 2.18 0.00 40.13 0.86
2489 2915 1.837051 CTGCAGAGGCCGGGGTATA 60.837 63.158 8.42 0.00 40.13 1.47
2490 2916 3.164269 CTGCAGAGGCCGGGGTAT 61.164 66.667 8.42 0.00 40.13 2.73
2494 2920 2.615227 AAATAGCTGCAGAGGCCGGG 62.615 60.000 20.43 0.00 40.13 5.73
2495 2921 0.749454 AAAATAGCTGCAGAGGCCGG 60.749 55.000 20.43 0.00 40.13 6.13
2496 2922 1.953559 TAAAATAGCTGCAGAGGCCG 58.046 50.000 20.43 0.00 40.13 6.13
2497 2923 6.581171 ATTAATAAAATAGCTGCAGAGGCC 57.419 37.500 20.43 0.00 40.13 5.19
2498 2924 8.137437 TGAAATTAATAAAATAGCTGCAGAGGC 58.863 33.333 20.43 2.30 41.68 4.70
2499 2925 9.455847 GTGAAATTAATAAAATAGCTGCAGAGG 57.544 33.333 20.43 0.00 0.00 3.69
2541 2967 9.420118 TGGTGGCTTTAGATTTATTGATGTATT 57.580 29.630 0.00 0.00 0.00 1.89
2542 2968 8.995027 TGGTGGCTTTAGATTTATTGATGTAT 57.005 30.769 0.00 0.00 0.00 2.29
2543 2969 8.995027 ATGGTGGCTTTAGATTTATTGATGTA 57.005 30.769 0.00 0.00 0.00 2.29
2544 2970 7.781693 AGATGGTGGCTTTAGATTTATTGATGT 59.218 33.333 0.00 0.00 0.00 3.06
2545 2971 8.174733 AGATGGTGGCTTTAGATTTATTGATG 57.825 34.615 0.00 0.00 0.00 3.07
2546 2972 9.866655 TTAGATGGTGGCTTTAGATTTATTGAT 57.133 29.630 0.00 0.00 0.00 2.57
2547 2973 9.342308 CTTAGATGGTGGCTTTAGATTTATTGA 57.658 33.333 0.00 0.00 0.00 2.57
2548 2974 8.078596 GCTTAGATGGTGGCTTTAGATTTATTG 58.921 37.037 0.00 0.00 0.00 1.90
2549 2975 7.779798 TGCTTAGATGGTGGCTTTAGATTTATT 59.220 33.333 0.00 0.00 0.00 1.40
2550 2976 7.290061 TGCTTAGATGGTGGCTTTAGATTTAT 58.710 34.615 0.00 0.00 0.00 1.40
2551 2977 6.658849 TGCTTAGATGGTGGCTTTAGATTTA 58.341 36.000 0.00 0.00 0.00 1.40
2552 2978 5.509498 TGCTTAGATGGTGGCTTTAGATTT 58.491 37.500 0.00 0.00 0.00 2.17
2553 2979 5.116084 TGCTTAGATGGTGGCTTTAGATT 57.884 39.130 0.00 0.00 0.00 2.40
2554 2980 4.778213 TGCTTAGATGGTGGCTTTAGAT 57.222 40.909 0.00 0.00 0.00 1.98
2555 2981 4.261801 GTTGCTTAGATGGTGGCTTTAGA 58.738 43.478 0.00 0.00 0.00 2.10
2556 2982 4.009675 TGTTGCTTAGATGGTGGCTTTAG 58.990 43.478 0.00 0.00 0.00 1.85
2557 2983 4.027674 TGTTGCTTAGATGGTGGCTTTA 57.972 40.909 0.00 0.00 0.00 1.85
2558 2984 2.875296 TGTTGCTTAGATGGTGGCTTT 58.125 42.857 0.00 0.00 0.00 3.51
2559 2985 2.584835 TGTTGCTTAGATGGTGGCTT 57.415 45.000 0.00 0.00 0.00 4.35
2560 2986 2.814805 ATGTTGCTTAGATGGTGGCT 57.185 45.000 0.00 0.00 0.00 4.75
2561 2987 3.056607 ACAAATGTTGCTTAGATGGTGGC 60.057 43.478 0.00 0.00 0.00 5.01
2562 2988 4.789012 ACAAATGTTGCTTAGATGGTGG 57.211 40.909 0.00 0.00 0.00 4.61
2575 3001 7.398024 AGAGGATAAGAGTAGCAACAAATGTT 58.602 34.615 0.00 0.00 39.12 2.71
2576 3002 6.951971 AGAGGATAAGAGTAGCAACAAATGT 58.048 36.000 0.00 0.00 0.00 2.71
2577 3003 7.550551 TCAAGAGGATAAGAGTAGCAACAAATG 59.449 37.037 0.00 0.00 0.00 2.32
2578 3004 7.624549 TCAAGAGGATAAGAGTAGCAACAAAT 58.375 34.615 0.00 0.00 0.00 2.32
2579 3005 7.004555 TCAAGAGGATAAGAGTAGCAACAAA 57.995 36.000 0.00 0.00 0.00 2.83
2580 3006 6.605471 TCAAGAGGATAAGAGTAGCAACAA 57.395 37.500 0.00 0.00 0.00 2.83
2581 3007 6.155221 ACATCAAGAGGATAAGAGTAGCAACA 59.845 38.462 0.00 0.00 33.95 3.33
2582 3008 6.578023 ACATCAAGAGGATAAGAGTAGCAAC 58.422 40.000 0.00 0.00 33.95 4.17
2583 3009 6.798427 ACATCAAGAGGATAAGAGTAGCAA 57.202 37.500 0.00 0.00 33.95 3.91
2584 3010 6.407412 CCAACATCAAGAGGATAAGAGTAGCA 60.407 42.308 0.00 0.00 33.95 3.49
2585 3011 5.988561 CCAACATCAAGAGGATAAGAGTAGC 59.011 44.000 0.00 0.00 33.95 3.58
2586 3012 6.983307 CACCAACATCAAGAGGATAAGAGTAG 59.017 42.308 0.00 0.00 33.95 2.57
2587 3013 6.440647 ACACCAACATCAAGAGGATAAGAGTA 59.559 38.462 0.00 0.00 33.95 2.59
2588 3014 5.249393 ACACCAACATCAAGAGGATAAGAGT 59.751 40.000 0.00 0.00 33.95 3.24
2589 3015 5.583854 CACACCAACATCAAGAGGATAAGAG 59.416 44.000 0.00 0.00 33.95 2.85
2590 3016 5.491070 CACACCAACATCAAGAGGATAAGA 58.509 41.667 0.00 0.00 33.95 2.10
2591 3017 4.095483 GCACACCAACATCAAGAGGATAAG 59.905 45.833 0.00 0.00 33.95 1.73
2592 3018 4.009675 GCACACCAACATCAAGAGGATAA 58.990 43.478 0.00 0.00 33.95 1.75
2593 3019 3.609853 GCACACCAACATCAAGAGGATA 58.390 45.455 0.00 0.00 33.95 2.59
2594 3020 2.440409 GCACACCAACATCAAGAGGAT 58.560 47.619 0.00 0.00 36.39 3.24
2595 3021 1.896220 GCACACCAACATCAAGAGGA 58.104 50.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.